Psyllid ID: psy8464

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MNSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEccccccccccccHHHcccccEEEcccccccccccccccccccEEcccccccccccccccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHHHccHHcHccccccHHccEEEccccccccHHHHHHccccccEEEccccccccHHccccccccc
Coil and Loop (DISEMBL)
mnsnlpffepdtermgkiqikelnldncrstNIAALTSEFTNLKILSAINVGltslkgfpelpaltrlelsdnrisgglnvlqsspklAYLNLCGNRikdletleplfgst
Flexible Loop (DISEMBL)
mnsnlpffepdterMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIkdletleplfgst
Low Complexity Region (SEG)
MNSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST
Disordered region (IsUnstruct)
****************KIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETL*******
Disordered Region (DISOPRED)
***NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS*
Disordered Region (DISEMBL)
MNSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST
Disordered Region (DISPRO)
***NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDL*TLEP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q28XE2	263	Acidic leucine-rich nucle	yes	N/A	0.801	0.338	0.741	4e-31
Q9V895	261	Acidic leucine-rich nucle	yes	N/A	0.801	0.340	0.741	8e-31
Q5ZMN0	262	Acidic leucine-rich nucle	yes	N/A	0.801	0.339	0.586	1e-20
P51122	249	Acidic leucine-rich nucle	yes	N/A	0.792	0.353	0.615	6e-18
Q6NUW5	250	Acidic leucine-rich nucle	yes	N/A	0.801	0.356	0.543	7e-18
Q8HY67	249	Acidic leucine-rich nucle	yes	N/A	0.792	0.353	0.615	8e-18
Q7ZUP0	254	Acidic leucine-rich nucle	no	N/A	0.801	0.350	0.608	1e-17
Q7ZY40	263	Acidic leucine-rich nucle	N/A	N/A	0.801	0.338	0.532	2e-17
Q6P1U7	242	Acidic leucine-rich nucle	no	N/A	0.792	0.363	0.615	3e-17
Q86QS6	275	Acidic leucine-rich nucle	N/A	N/A	0.801	0.323	0.505	8e-17

>sp|Q28XE2|AN32A_DROPS Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Drosophila pseudoobscura pseudoobscura GN=Anp32a PE=3 SV=2

 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 76/89 (85%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           QI+ELNLDNCRST+I  LT E+T L+ LS INVGLT+LKGFP+LP L +LELSDNRIS G
Sbjct: 16  QIQELNLDNCRSTSIVGLTDEYTALESLSLINVGLTTLKGFPKLPNLKKLELSDNRISSG 75

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           LN L +SPKL YLNL GN+IKDLETL+PL
Sbjct: 76  LNYLTTSPKLQYLNLSGNKIKDLETLKPL 104

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9V895|AN32A_DROME Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Drosophila melanogaster GN=Anp32a PE=2 SV=1

 Score =  132 bits (331), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 75/89 (84%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           QI ELNLDNCRST+I  LT E+T L+ LS INVGLT+LKGFP+LP L +LELSDNRIS G
Sbjct: 16  QITELNLDNCRSTSIVGLTDEYTALESLSLINVGLTTLKGFPKLPNLKKLELSDNRISSG 75

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           LN L +SPKL YLNL GN+IKDLETL+PL
Sbjct: 76  LNYLTTSPKLQYLNLSGNKIKDLETLKPL 104

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q5ZMN0|AN32B_CHICK Acidic leucine-rich nuclear phosphoprotein 32 family member B OS=Gallus gallus GN=ANP32B PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 68/92 (73%), Gaps = 3/92 (3%)

Query: 19  QIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
           ++KEL LDNCRS +  I  L+S+F NL+ LS INV L S+   P+L  L +LELSDNRIS
Sbjct: 18  EVKELVLDNCRSDDGKIVGLSSDFENLEFLSMINVNLLSISNLPKLNKLRKLELSDNRIS 77

Query: 77  GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
           GGL VL + +P L +LNL GN+IKD+ TLEPL
Sbjct: 78  GGLEVLAERTPNLTHLNLSGNKIKDINTLEPL 109

Multifunctional protein working as a cell cycle progression factor as well as a cell survival factor. Required for the progression from the G1 to the S phase. Anti-apoptotic protein which functions as a caspase-3 inhibitor. Has no phosphatase 2A (PP2A) inhibitor activity. Exhibits histone chaperone properties, stimulating core histones to assemble into a nucleosome.

Gallus gallus (taxid: 9031)

>sp|P51122|AN32A_BOVIN Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Bos taurus GN=ANP32A PE=1 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 65/91 (71%), Gaps = 3/91 (3%)

Query: 20  IKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           +KEL LDNCRS    I  LT EF  L+ LS INVGLTS+   P+L  L +LELSDNRISG
Sbjct: 19  VKELVLDNCRSNEGKIEGLTDEFEELEFLSTINVGLTSVANLPKLNKLKKLELSDNRISG 78

Query: 78  GLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
           GL VL +  P L +LNL GN+IKDL T+EPL
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability in association with ELAVL1, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex. Plays a role in E4F1-mediated transcriptional repression.

Bos taurus (taxid: 9913)

>sp|Q6NUW5|AN32E_DANRE Acidic leucine-rich nuclear phosphoprotein 32 family member E OS=Danio rerio GN=anp32e PE=1 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 3/92 (3%)

Query: 19  QIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
           ++ EL +DNCRS++  I  LT +F  L+ LS +NVGLTSL   P LP L +LELSDN IS
Sbjct: 18  EVAELVVDNCRSSDGEIEGLTDDFKELEFLSMVNVGLTSLAKLPSLPKLRKLELSDNNIS 77

Query: 77  GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
           G L  L +    L YLNL GN+IK+L TLE L
Sbjct: 78  GTLETLAEKCANLTYLNLSGNKIKELSTLEAL 109

Inhibits activity of protein phosphatase 2A (PP2A). Does not inhibit protein phosphatase 1. May play a role in cerebellar development and synaptogenesis process by modulating PP2A activity.

Danio rerio (taxid: 7955)

>sp|Q8HY67|AN32A_CANFA Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Canis familiaris GN=ANP32A PE=2 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 65/91 (71%), Gaps = 3/91 (3%)

Query: 20  IKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           +KEL LDNCRS    I  LT EF  L+ LS INVGLTS+   P+L  L +LELSDNRISG
Sbjct: 19  VKELVLDNCRSIEGKIEGLTDEFEELEFLSTINVGLTSVANLPKLNKLKKLELSDNRISG 78

Query: 78  GLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
           GL VL +  P L +LNL GN+IKDL T+EPL
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability in association with ELAVL1, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex. Plays a role in E4F1-mediated transcriptional repression.

Canis familiaris (taxid: 9615)

>sp|Q7ZUP0|AN32A_DANRE Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Danio rerio GN=anp32a PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 64/92 (69%), Gaps = 3/92 (3%)

Query: 19  QIKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
            +KEL LDNCRS    I  LT EF  L+ LS INVGLTS+   P+L  L +LELSDNRIS
Sbjct: 18  DVKELVLDNCRSNEGKIEGLTDEFEELEFLSTINVGLTSVTNLPKLNKLKKLELSDNRIS 77

Query: 77  GGLNVLQSS-PKLAYLNLCGNRIKDLETLEPL 107
           GGL VL    P L +LNL GN+IKDL T+EPL
Sbjct: 78  GGLEVLAGKCPNLTHLNLSGNKIKDLSTIEPL 109

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex.

Danio rerio (taxid: 7955)

>sp|Q7ZY40|AN32E_XENLA Acidic leucine-rich nuclear phosphoprotein 32 family member E OS=Xenopus laevis GN=anp32e PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 61/92 (66%), Gaps = 3/92 (3%)

Query: 19  QIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
           ++ EL LDNCRS +  I  L   +  L+ LS  NV L SL   P+LP L +LELSDN IS
Sbjct: 18  EVAELVLDNCRSVDGEIEGLNDSYKELEFLSMANVELKSLSKLPKLPKLRKLELSDNSIS 77

Query: 77  GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
           GGL+VL +  P + YLNL GN+IKDL T+E L
Sbjct: 78  GGLDVLTERCPNITYLNLSGNKIKDLSTVEAL 109

Inhibits activity of protein phosphatase 2A (PP2A). Does not inhibit protein phosphatase 1. May play a role in cerebellar development and synaptogenesis process by modulating PP2A activity.

Xenopus laevis (taxid: 8355)

>sp|Q6P1U7|AN32B_XENTR Acidic leucine-rich nuclear phosphoprotein 32 family member B OS=Xenopus tropicalis GN=anp32b PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 68/91 (74%), Gaps = 3/91 (3%)

Query: 20  IKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           +KEL LDNCRS +  I  LTSEF NL+ LS INV L S+   P+LP L +LELSDNRISG
Sbjct: 19  VKELVLDNCRSDDGKIIGLTSEFENLEFLSMINVNLLSVANLPKLPKLKKLELSDNRISG 78

Query: 78  GLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
           GL VL + +P L +LNL GN+IK++ TLEPL
Sbjct: 79  GLEVLAERTPNLTHLNLSGNKIKEINTLEPL 109

Multifunctional protein working as a cell cycle progression factor as well as a cell survival factor. Required for the progression from the G1 to the S phase. Anti-apoptotic protein which functions as a caspase-3 inhibitor. Has no phosphatase 2A (PP2A) inhibitor activity. Exhibits histone chaperone properties, stimulating core histones to assemble into a nucleosome.

Xenopus tropicalis (taxid: 8364)

>sp|Q86QS6|AN32_SCHMA Acidic leucine-rich nuclear phosphoprotein 32-related protein OS=Schistosoma mansoni GN=SMV0119 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 61/89 (68%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           +I ELNLDN +S +I  LT E+++L++LS +NVGL SL G P L  L  LELS+N ISGG
Sbjct: 18  EITELNLDNSKSVDIEGLTDEYSSLEVLSMMNVGLQSLAGLPCLAGLKTLELSNNLISGG 77

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           L+ L   P +  LNL  N+I+ ++ L PL
Sbjct: 78  LDALLKCPNIEQLNLSSNKIESMDVLIPL 106

Schistosoma mansoni (taxid: 6183)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
332375691	249	unknown [Dendroctonus ponderosae]	0.855	0.381	0.721	4e-31
242004917	276	conserved hypothetical protein [Pediculu	0.810	0.326	0.755	2e-30
442749617	260	Putative leucine-rich acidic nuclear pro	0.855	0.365	0.731	8e-30
33518715	243	mapmodulin-like protein [Rhodnius prolix	0.801	0.366	0.764	8e-30
260820479	240	hypothetical protein BRAFLDRAFT_239771 [	0.801	0.370	0.764	9e-30
241042409	248	Mapmodulin, putative [Ixodes scapularis]	0.855	0.383	0.731	1e-29
325303822	262	TPA_exp: mapmodulin-like protein [Amblyo	0.855	0.362	0.721	1e-29
427781505	245	Putative microtubule binding protein [Rh	0.855	0.387	0.721	2e-29
195153333	263	GL17265 [Drosophila persimilis] gi|19846	0.801	0.338	0.741	2e-29
307202763	253	Acidic leucine-rich nuclear phosphoprote	0.810	0.355	0.744	2e-29

>gi|332375691|gb|AEE62986.1| unknown [Dendroctonus ponderosae]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 81/97 (83%), Gaps = 2/97 (2%)

Query: 13  ERMGK--IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLEL 70
           E+ GK    IKELNLDNCRSTNI  LT EF NL+ LS INVGLTSLKGFP+LP L +LEL
Sbjct: 8   EKRGKNPADIKELNLDNCRSTNIVGLTDEFENLETLSLINVGLTSLKGFPKLPNLKKLEL 67

Query: 71  SDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           SDNRISGG ++L++SPKLAYLNL GN+IKD+E+LE L
Sbjct: 68  SDNRISGGFDILETSPKLAYLNLSGNKIKDVESLESL 104

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004917|ref|XP_002423322.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506341|gb|EEB10584.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 77/90 (85%)

Query: 18  IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           I I+ELNLDNCRST+I  LT EF NL+ LS INVGLTSLKGFP+LP L RLELSDNRIS 
Sbjct: 57  INIRELNLDNCRSTSIIGLTDEFVNLECLSLINVGLTSLKGFPKLPNLKRLELSDNRISN 116

Query: 78  GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           GLN+L +SPK+ +LNL GN+IKDLETLEPL
Sbjct: 117 GLNLLHTSPKITHLNLSGNKIKDLETLEPL 146

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442749617|gb|JAA66968.1| Putative leucine-rich acidic nuclear protein [Ixodes ricinus]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 78/97 (80%), Gaps = 2/97 (2%)

Query: 13  ERMGK--IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLEL 70
           E+ GK   QI ELNLDNCRST I  LT EF NL+ LS INVGLTSLKGFP+LP L +LEL
Sbjct: 8   EKRGKNPEQIHELNLDNCRSTAIVGLTEEFVNLESLSLINVGLTSLKGFPKLPNLKKLEL 67

Query: 71  SDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           SDNRISGGLN+L  SPKL +LNL GN+IK LETLEPL
Sbjct: 68  SDNRISGGLNLLHGSPKLTHLNLSGNKIKGLETLEPL 104

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33518715|gb|AAQ20840.1| mapmodulin-like protein [Rhodnius prolixus]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 75/89 (84%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           QI ELNLDNCRST I  LT +FTNLK LS INVGLTSLKGFP+LP L +LELSDNRIS G
Sbjct: 16  QIYELNLDNCRSTTIEGLTDDFTNLKSLSLINVGLTSLKGFPKLPNLQKLELSDNRISNG 75

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           LN+L +SPKL  LNL GN+IKDL+TLEPL
Sbjct: 76  LNLLHTSPKLTNLNLSGNKIKDLDTLEPL 104

Source: Rhodnius prolixus

Species: Rhodnius prolixus

Genus: Rhodnius

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260820479|ref|XP_002605562.1| hypothetical protein BRAFLDRAFT_239771 [Branchiostoma floridae] gi|229290896|gb|EEN61572.1| hypothetical protein BRAFLDRAFT_239771 [Branchiostoma floridae]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 75/89 (84%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           QIKELNLDNCRS  I  LT EFTNL+ LS INVGLTSLKGFP+LP+L +LELSDNRI GG
Sbjct: 16  QIKELNLDNCRSMMIEGLTDEFTNLEALSLINVGLTSLKGFPKLPSLKKLELSDNRIQGG 75

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           LN+L  S KL +LNL GN+IKDLETLEPL
Sbjct: 76  LNLLSGSGKLTHLNLSGNKIKDLETLEPL 104

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|241042409|ref|XP_002407054.1| Mapmodulin, putative [Ixodes scapularis] gi|215492088|gb|EEC01729.1| Mapmodulin, putative [Ixodes scapularis]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 78/97 (80%), Gaps = 2/97 (2%)

Query: 13  ERMGK--IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLEL 70
           E+ GK   QI ELNLDNCRST I  LT EF NL+ LS INVGLTSLKGFP+LP L +LEL
Sbjct: 8   EKRGKNPEQIHELNLDNCRSTAIVGLTEEFVNLESLSLINVGLTSLKGFPKLPNLKKLEL 67

Query: 71  SDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           SDNRISGGLN+L  SPKL +LNL GN+IK LETLEPL
Sbjct: 68  SDNRISGGLNLLHGSPKLTHLNLSGNKIKGLETLEPL 104

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325303822|tpg|DAA34585.1| TPA_exp: mapmodulin-like protein [Amblyomma variegatum]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 78/97 (80%), Gaps = 2/97 (2%)

Query: 13  ERMGK--IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLEL 70
           E+ GK   QI ELNLDNCRST I  LT EF NL+ LS INVGLTSLKGFP+LP L +LEL
Sbjct: 8   EKRGKNPEQIHELNLDNCRSTAIVGLTEEFVNLETLSLINVGLTSLKGFPKLPNLKKLEL 67

Query: 71  SDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           SDNRISGGLN+L  SPKL +LNL GN+IK LETL+PL
Sbjct: 68  SDNRISGGLNLLHGSPKLTHLNLSGNKIKGLETLDPL 104

Source: Amblyomma variegatum

Species: Amblyomma variegatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427781505|gb|JAA56204.1| Putative microtubule binding protein [Rhipicephalus pulchellus]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 78/97 (80%), Gaps = 2/97 (2%)

Query: 13  ERMGK--IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLEL 70
           E+ GK   QI ELNLDNCRST I  LT EF NL+ LS INVGLTSLKGFP+LP L +LEL
Sbjct: 8   EKRGKNPEQIHELNLDNCRSTAIVGLTEEFVNLETLSLINVGLTSLKGFPKLPNLKKLEL 67

Query: 71  SDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           SDNRISGGLN+L  SPKL +LNL GN+IK LETL+PL
Sbjct: 68  SDNRISGGLNLLHGSPKLTHLNLSGNKIKGLETLDPL 104

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195153333|ref|XP_002017582.1| GL17265 [Drosophila persimilis] gi|198460703|ref|XP_001361795.2| GA19125 [Drosophila pseudoobscura pseudoobscura] gi|218511919|sp|Q28XE2.2|AN32A_DROPS RecName: Full=Acidic leucine-rich nuclear phosphoprotein 32 family member A gi|194113378|gb|EDW35421.1| GL17265 [Drosophila persimilis] gi|198137103|gb|EAL26374.2| GA19125 [Drosophila pseudoobscura pseudoobscura]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 76/89 (85%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           QI+ELNLDNCRST+I  LT E+T L+ LS INVGLT+LKGFP+LP L +LELSDNRIS G
Sbjct: 16  QIQELNLDNCRSTSIVGLTDEYTALESLSLINVGLTTLKGFPKLPNLKKLELSDNRISSG 75

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           LN L +SPKL YLNL GN+IKDLETL+PL
Sbjct: 76  LNYLTTSPKLQYLNLSGNKIKDLETLKPL 104

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202763|gb|EFN82054.1| Acidic leucine-rich nuclear phosphoprotein 32 family member A [Harpegnathos saltator]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 78/90 (86%)

Query: 18  IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           +QIKEL LDNCRST I  LTSEF +L+ LS INVGLTSLKGFP+L +L +LELSDNRISG
Sbjct: 22  LQIKELVLDNCRSTQIVGLTSEFVSLESLSLINVGLTSLKGFPKLSSLKKLELSDNRISG 81

Query: 78  GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           GLN+L SSPKL +LNL GN+IKDL+TL+PL
Sbjct: 82  GLNLLDSSPKLTHLNLSGNKIKDLDTLQPL 111

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
UNIPROTKB|Q28XE2	263	Anp32a "Acidic leucine-rich nu	0.801	0.338	0.741	6.2e-30
FB|FBgn0034282	261	Mapmodulin "Mapmodulin" [Droso	0.846	0.360	0.715	7.9e-30
UNIPROTKB|F1SIU2	263	LOC100155298 "Uncharacterized	0.801	0.338	0.619	1e-22
ZFIN|ZDB-GENE-030131-7850	263	anp32a "acidic (leucine-rich)	0.963	0.406	0.525	1e-22
UNIPROTKB|P51122	249	ANP32A "Acidic leucine-rich nu	0.792	0.353	0.615	2.6e-22
UNIPROTKB|F1PQ43	231	ANP32A "Acidic leucine-rich nu	0.792	0.380	0.615	3.4e-22
UNIPROTKB|Q8HY67	249	ANP32A "Acidic leucine-rich nu	0.792	0.353	0.615	3.4e-22
UNIPROTKB|Q5ZMN0	262	ANP32B "Acidic leucine-rich nu	0.801	0.339	0.586	7e-22
UNIPROTKB|Q3SZC6	261	ANP32B "Acidic leucine-rich nu	0.792	0.337	0.571	7e-22
UNIPROTKB|Q92688	251	ANP32B "Acidic leucine-rich nu	0.792	0.350	0.560	2.4e-21

UNIPROTKB|Q28XE2 Anp32a "Acidic leucine-rich nuclear phosphoprotein 32 family member A" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 66/89 (74%), Positives = 76/89 (85%)

Query:    19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
             QI+ELNLDNCRST+I  LT E+T L+ LS INVGLT+LKGFP+LP L +LELSDNRIS G
Sbjct:    16 QIQELNLDNCRSTSIVGLTDEYTALESLSLINVGLTTLKGFPKLPNLKKLELSDNRISSG 75

Query:    79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
             LN L +SPKL YLNL GN+IKDLETL+PL
Sbjct:    76 LNYLTTSPKLQYLNLSGNKIKDLETLKPL 104

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

FB|FBgn0034282 Mapmodulin "Mapmodulin" [Drosophila melanogaster (taxid:7227)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 68/95 (71%), Positives = 78/95 (82%)

Query:    14 RMGKI-QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSD 72
             R  K+ QI ELNLDNCRST+I  LT E+T L+ LS INVGLT+LKGFP+LP L +LELSD
Sbjct:    10 RARKVNQITELNLDNCRSTSIVGLTDEYTALESLSLINVGLTTLKGFPKLPNLKKLELSD 69

Query:    73 NRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
             NRIS GLN L +SPKL YLNL GN+IKDLETL+PL
Sbjct:    70 NRISSGLNYLTTSPKLQYLNLSGNKIKDLETLKPL 104

GO:0008017 "microtubule binding" evidence=ISS

GO:0007017 "microtubule-based process" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0019212 "phosphatase inhibitor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|F1SIU2 LOC100155298 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 57/92 (61%), Positives = 66/92 (71%)

Query:    19 QIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
             Q+KEL LDNCRS    I  LT EF  L+ LS INVGLTS+   P+L  L +LELSDNRIS
Sbjct:    18 QVKELVLDNCRSNEGKIEGLTDEFEELEFLSTINVGLTSVANLPKLNKLKKLELSDNRIS 77

Query:    77 GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
             GGL VL +  P L +LNL GN+IKDL T+EPL
Sbjct:    78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTVEPL 109

GO:0016363 "nuclear matrix" evidence=IEA

ZFIN|ZDB-GENE-030131-7850 anp32a "acidic (leucine-rich) nuclear phosphoprotein 32 family, member A" [Danio rerio (taxid:7955)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 62/118 (52%), Positives = 75/118 (63%)

Query:     1 MNSNLPFFEPDTERMGKIQ--------IKELNLDNCRSTN--IAALTSEFTNLKILSAIN 50
             M SN+ F E D ++   ++        +KEL LDNCRS    I  LT EF  L+ LS IN
Sbjct:     1 MTSNIEFTEMDMKKRIHLELRNRTPSDVKELVLDNCRSNEGKIEGLTDEFEELEFLSTIN 60

Query:    51 VGLTSLKGFPELPALTRLELSDNRISGGLNVLQSS-PKLAYLNLCGNRIKDLETLEPL 107
             VGLTS+   P+L  L +LELSDNRISGGL VL    P L +LNL GN+IKDL T+EPL
Sbjct:    61 VGLTSVTNLPKLNKLKKLELSDNRISGGLEVLAGKCPNLTHLNLSGNKIKDLSTIEPL 118

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P51122 ANP32A "Acidic leucine-rich nuclear phosphoprotein 32 family member A" [Bos taurus (taxid:9913)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 56/91 (61%), Positives = 65/91 (71%)

Query:    20 IKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
             +KEL LDNCRS    I  LT EF  L+ LS INVGLTS+   P+L  L +LELSDNRISG
Sbjct:    19 VKELVLDNCRSNEGKIEGLTDEFEELEFLSTINVGLTSVANLPKLNKLKKLELSDNRISG 78

Query:    78 GLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
             GL VL +  P L +LNL GN+IKDL T+EPL
Sbjct:    79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0016363 "nuclear matrix" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PQ43 ANP32A "Acidic leucine-rich nuclear phosphoprotein 32 family member A" [Canis lupus familiaris (taxid:9615)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 56/91 (61%), Positives = 65/91 (71%)

Query:    20 IKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
             +KEL LDNCRS    I  LT EF  L+ LS INVGLTS+   P+L  L +LELSDNRISG
Sbjct:     1 VKELVLDNCRSIEGKIEGLTDEFEELEFLSTINVGLTSVANLPKLNKLKKLELSDNRISG 60

Query:    78 GLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
             GL VL +  P L +LNL GN+IKDL T+EPL
Sbjct:    61 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 91

GO:0016363 "nuclear matrix" evidence=IEA

UNIPROTKB|Q8HY67 ANP32A "Acidic leucine-rich nuclear phosphoprotein 32 family member A" [Canis lupus familiaris (taxid:9615)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 56/91 (61%), Positives = 65/91 (71%)

Query:    20 IKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
             +KEL LDNCRS    I  LT EF  L+ LS INVGLTS+   P+L  L +LELSDNRISG
Sbjct:    19 VKELVLDNCRSIEGKIEGLTDEFEELEFLSTINVGLTSVANLPKLNKLKKLELSDNRISG 78

Query:    78 GLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
             GL VL +  P L +LNL GN+IKDL T+EPL
Sbjct:    79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5ZMN0 ANP32B "Acidic leucine-rich nuclear phosphoprotein 32 family member B" [Gallus gallus (taxid:9031)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 54/92 (58%), Positives = 68/92 (73%)

Query:    19 QIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
             ++KEL LDNCRS +  I  L+S+F NL+ LS INV L S+   P+L  L +LELSDNRIS
Sbjct:    18 EVKELVLDNCRSDDGKIVGLSSDFENLEFLSMINVNLLSISNLPKLNKLRKLELSDNRIS 77

Query:    77 GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
             GGL VL + +P L +LNL GN+IKD+ TLEPL
Sbjct:    78 GGLEVLAERTPNLTHLNLSGNKIKDINTLEPL 109

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q3SZC6 ANP32B "Acidic leucine-rich nuclear phosphoprotein 32 family member B" [Bos taurus (taxid:9913)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 52/91 (57%), Positives = 68/91 (74%)

Query:    20 IKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
             ++EL LDNC+S +  I  LT+EF NL+ LS INVGL S+   P+LP L +LELSDNRI G
Sbjct:    19 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSDNRICG 78

Query:    78 GLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
             GL++L +  P L +LNL GN++KD+ TLEPL
Sbjct:    79 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 109

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|Q92688 ANP32B "Acidic leucine-rich nuclear phosphoprotein 32 family member B" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 51/91 (56%), Positives = 68/91 (74%)

Query:    20 IKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
             ++EL LDNC+S +  I  LT+EF NL+ LS INVGL S+   P+LP L +LELS+NRI G
Sbjct:    19 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG 78

Query:    78 GLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
             GL++L +  P L +LNL GN++KD+ TLEPL
Sbjct:    79 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 109

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8HY67	AN32A_CANFA	No assigned EC number	0.6153	0.7927	0.3534	yes	N/A
P51122	AN32A_BOVIN	No assigned EC number	0.6153	0.7927	0.3534	yes	N/A
Q28XE2	AN32A_DROPS	No assigned EC number	0.7415	0.8018	0.3384	yes	N/A
O35381	AN32A_MOUSE	No assigned EC number	0.5824	0.7927	0.3562	yes	N/A
Q9V895	AN32A_DROME	No assigned EC number	0.7415	0.8018	0.3409	yes	N/A
P49911	AN32A_RAT	No assigned EC number	0.5934	0.7927	0.3562	yes	N/A
Q6NUW5	AN32E_DANRE	No assigned EC number	0.5434	0.8018	0.356	yes	N/A
Q5ZMN0	AN32B_CHICK	No assigned EC number	0.5869	0.8018	0.3396	yes	N/A
P39687	AN32A_HUMAN	No assigned EC number	0.5824	0.7927	0.3534	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 32.5 bits (75), Expect = 0.003
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 63  PALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLE 105
             L  L+LS+N+I+  L  L + P L  L+L GN+I DL  L 
Sbjct: 1   TNLETLDLSNNQITD-LPPLSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.43
KOG0617|consensus	264		99.28
KOG0617|consensus	264		99.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG0444|consensus	1255		99.04
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.03
KOG4194|consensus	873		98.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.95
KOG0444|consensus	1255		98.95
KOG4194|consensus	873		98.94
PLN03150	623	hypothetical protein; Provisional	98.93
KOG0472|consensus	565		98.91
KOG0472|consensus	565		98.89
KOG1259|consensus	490		98.83
PLN03150	623	hypothetical protein; Provisional	98.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.7
KOG1644|consensus	233		98.65
KOG0531|consensus	414		98.64
KOG0618|consensus	1081		98.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.59
KOG1259|consensus	490		98.59
KOG4237|consensus	498		98.57
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.57
KOG0618|consensus	1081		98.56
KOG4237|consensus	498		98.55
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.53
KOG0532|consensus	722		98.5
KOG0532|consensus	722		98.49
KOG1859|consensus	1096		98.46
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.37
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.34
KOG0531|consensus	414		98.32
KOG1859|consensus	1096		98.26
KOG4579|consensus	177		98.25
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.22
KOG2739|consensus	260		98.14
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.11
KOG4579|consensus	177		98.06
KOG4658|consensus	889		97.86
KOG1644|consensus	233		97.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.79
KOG3207|consensus	505		97.66
KOG3207|consensus	505		97.65
KOG4658|consensus	889		97.63
KOG2982|consensus	418		97.4
KOG2123|consensus	388		97.34
KOG3665|consensus	699		97.33
KOG3665|consensus	699		97.29
KOG2123|consensus	388		97.27
KOG2739|consensus	260		97.1
KOG1909|consensus	382		96.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.84
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.38
KOG1909|consensus	382		96.09
PRK15386	426	type III secretion protein GogB; Provisional	95.74
KOG2982|consensus	418		95.54
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.5
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.99
PRK15386	426	type III secretion protein GogB; Provisional	94.94
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	94.14
smart00370	26	LRR Leucine-rich repeats, outliers.	93.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.56
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	93.18
KOG0473|consensus	326		90.47
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.66
KOG3763|consensus	585		86.75
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.28
KOG3763|consensus	585		84.76
KOG2120|consensus	419		84.46
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	83.89

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.43  E-value=9e-14  Score=82.05  Aligned_cols=94  Identities=38%  Similarity=0.578  Sum_probs=33.2

Q ss_pred             cCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC-CCCCCcEEEc
Q psy8464          15 MGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ-SSPKLAYLNL   93 (111)
Q Consensus        15 ~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l   93 (111)
                      .++..+++|++++|.|+.+...-..+.+++.+++++|.++.+.++..+.+|+.|++++|.++.+.+.+. .++.|+.|++
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            333567888999999988765534677888999999999888888888889999999999887444443 5788999999


Q ss_pred             CCCCCCCCcCCCCCC
Q psy8464          94 CGNRIKDLETLEPLF  108 (111)
Q Consensus        94 ~~n~l~~~~~~~~l~  108 (111)
                      ++|.+.++..+..++
T Consensus        96 ~~N~I~~l~~l~~L~  110 (175)
T PF14580_consen   96 SNNKISDLNELEPLS  110 (175)
T ss_dssp             TTS---SCCCCGGGG
T ss_pred             cCCcCCChHHhHHHH
Confidence            999888776555443

>KOG0617|consensus

Probab=99.28  E-value=1.4e-13  Score=80.72  Aligned_cols=98  Identities=20%  Similarity=0.209  Sum_probs=64.5

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC--CC-CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS--LK-GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~--l~-~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      |+.++++|..+..+  +.++.+++.-|++..+|..|+.++.|+++|+..|.+..  +| .|..+..|+.|++++|.+..+
T Consensus        65 nnqie~lp~~issl--~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l  142 (264)
T KOG0617|consen   65 NNQIEELPTSISSL--PKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL  142 (264)
T ss_pred             cchhhhcChhhhhc--hhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC
Confidence            45556666666666  66666666666666666666667777777776666654  44 455555566666666666666


Q ss_pred             ccccCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LNVLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ++.++.+.+|+.+.+..|.+-++
T Consensus       143 p~dvg~lt~lqil~lrdndll~l  165 (264)
T KOG0617|consen  143 PPDVGKLTNLQILSLRDNDLLSL  165 (264)
T ss_pred             ChhhhhhcceeEEeeccCchhhC
Confidence            66677778888888877766444

>KOG0617|consensus

Probab=99.21  E-value=1.1e-12  Score=77.10  Aligned_cols=83  Identities=27%  Similarity=0.338  Sum_probs=69.9

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN   96 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n   96 (111)
                      +.++.+.++.|+++.+|..+..+.+|+++++.+|.+..+| +++.+++|+.|+++.|++..++..||.++.|+.+++++|
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence            7788888888888888888888888888888888888888 788888888888888888776666888888888888888


Q ss_pred             CCCC
Q psy8464          97 RIKD  100 (111)
Q Consensus        97 ~l~~  100 (111)
                      ++..
T Consensus       113 nl~e  116 (264)
T KOG0617|consen  113 NLNE  116 (264)
T ss_pred             cccc
Confidence            8764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=1.3e-10  Score=57.41  Aligned_cols=55  Identities=38%  Similarity=0.552  Sum_probs=25.8

Q ss_pred             CccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCC
Q psy8464          19 QIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDN   73 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n   73 (111)
                      +++++++++|+++.++. .|..+++|+.+++++|.++.++  .|.++++|+++++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            34555555555555332 3344444444444444444433  3444444444444444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.07  E-value=1.4e-10  Score=57.31  Aligned_cols=58  Identities=34%  Similarity=0.537  Sum_probs=51.6

Q ss_pred             CCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCCCC
Q psy8464          41 TNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGNRI   98 (111)
Q Consensus        41 ~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~l   98 (111)
                      ++++.+++++|.++.++  .|..+++|+++++++|.+..+.+. +..+++|+++++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999999988  688999999999999999986554 78999999999999975

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1.5e-10  Score=68.48  Aligned_cols=83  Identities=34%  Similarity=0.443  Sum_probs=42.1

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CC-CCCCCCCEEEcCCCcCCCcc--cccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GF-PELPALTRLELSDNRISGGL--NVLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~-~~l~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l   93 (111)
                      ..++.|++++|.|+.+++ +..+..|+.+++++|.++.++ .+ ..+++|+.|++++|++.++-  ..++.++.|+.|++
T Consensus        42 ~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L  120 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL  120 (175)
T ss_dssp             TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred             cCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence            678999999999999875 467899999999999999986 34 35789999999999998743  33668999999999


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      .+|.++..
T Consensus       121 ~~NPv~~~  128 (175)
T PF14580_consen  121 EGNPVCEK  128 (175)
T ss_dssp             TT-GGGGS
T ss_pred             cCCcccch
Confidence            99999754

>KOG0444|consensus

Probab=99.04  E-value=2.9e-11  Score=82.99  Aligned_cols=91  Identities=20%  Similarity=0.192  Sum_probs=81.4

Q ss_pred             CCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCC
Q psy8464           7 FFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNVLQS   84 (111)
Q Consensus         7 ~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~   84 (111)
                      -+|++++.+  ..++.||++.|++..+|.....-.+.-++++++|.+.++|  -|-.+..|-+|+++.|++..++|.+..
T Consensus        94 GiP~diF~l--~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR  171 (1255)
T KOG0444|consen   94 GIPTDIFRL--KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR  171 (1255)
T ss_pred             CCCchhccc--ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence            389999998  8999999999999999998888888999999999999999  356778888999999999998888888


Q ss_pred             CCCCcEEEcCCCCCC
Q psy8464          85 SPKLAYLNLCGNRIK   99 (111)
Q Consensus        85 ~~~L~~l~l~~n~l~   99 (111)
                      +..|++|.+++|.+.
T Consensus       172 L~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLN  186 (1255)
T ss_pred             HhhhhhhhcCCChhh
Confidence            899999999999875

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.03  E-value=1.1e-09  Score=79.05  Aligned_cols=81  Identities=21%  Similarity=0.282  Sum_probs=37.6

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCcc-cccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l   93 (111)
                      ++++.|++++|.+.. +|..+..+.+|+.+++++|.+.. +| .+..+.+|++|++++|.+.... ..++.+++|++|++
T Consensus       164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            445555555555443 44444445555555555554432 22 3344444555555554444222 22444445555555


Q ss_pred             CCCCC
Q psy8464          94 CGNRI   98 (111)
Q Consensus        94 ~~n~l   98 (111)
                      ++|.+
T Consensus       244 ~~n~l  248 (968)
T PLN00113        244 VYNNL  248 (968)
T ss_pred             cCcee
Confidence            55444

>KOG4194|consensus

Probab=98.96  E-value=6.5e-11  Score=80.39  Aligned_cols=83  Identities=24%  Similarity=0.304  Sum_probs=39.4

Q ss_pred             CccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC-----CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEE
Q psy8464          19 QIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK-----GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYL   91 (111)
Q Consensus        19 ~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~-----~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l   91 (111)
                      .+++|.++.|+++. ....|..+.+|+.|++..|.+++.-     .|.++++|+.|.+.+|++..++.. |.++..|++|
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L  421 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL  421 (873)
T ss_pred             HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence            33444444444444 2223344444555555555544421     244555555555555555553322 4455555555


Q ss_pred             EcCCCCCCCC
Q psy8464          92 NLCGNRIKDL  101 (111)
Q Consensus        92 ~l~~n~l~~~  101 (111)
                      ++.+|.+.++
T Consensus       422 dL~~NaiaSI  431 (873)
T KOG4194|consen  422 DLGDNAIASI  431 (873)
T ss_pred             cCCCCcceee
Confidence            5555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.95  E-value=2.5e-09  Score=77.32  Aligned_cols=82  Identities=26%  Similarity=0.419  Sum_probs=48.0

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.+.. +|..+..+.+|+.+++++|.++. +| .+..+++|+.|++++|.+....+ .+..+..|+.+++
T Consensus       499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l  578 (968)
T PLN00113        499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI  578 (968)
T ss_pred             hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence            455566666666655 55555556666666666666654 33 45556666666666666654333 3555666666666


Q ss_pred             CCCCCC
Q psy8464          94 CGNRIK   99 (111)
Q Consensus        94 ~~n~l~   99 (111)
                      ++|.+.
T Consensus       579 s~N~l~  584 (968)
T PLN00113        579 SHNHLH  584 (968)
T ss_pred             cCCcce
Confidence            666654

>KOG0444|consensus

Probab=98.95  E-value=1.9e-11  Score=83.90  Aligned_cols=71  Identities=27%  Similarity=0.388  Sum_probs=37.7

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcC
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRI   75 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~   75 (111)
                      ++|+.+|+++.++  .+++.|++++|.|+.+....+.+.+++.++++.|.++.+| .++++++|+.|+..+|++
T Consensus       232 N~Lp~vPecly~l--~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  232 NNLPIVPECLYKL--RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             cCCCcchHHHhhh--hhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence            3455555555555  5555555555555554444444455555555555555555 445555555555555543

>KOG4194|consensus

Probab=98.94  E-value=1.1e-09  Score=74.59  Aligned_cols=98  Identities=21%  Similarity=0.263  Sum_probs=68.3

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      ++.|+++|.-....  ..++.|++..|.|+.+.. ....++.++++|++.|.++.++  .|+.-..+++|++++|.++.+
T Consensus       111 ~N~Lt~IP~f~~~s--ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l  188 (873)
T KOG4194|consen  111 KNELTRIPRFGHES--GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL  188 (873)
T ss_pred             cchhhhcccccccc--cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc
Confidence            34567777644333  668888888888888433 4477788888888888888776  566666778888888887763


Q ss_pred             cc-ccCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LN-VLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~-~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      -. .|..+.+|.++.++.|.++.+
T Consensus       189 ~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  189 ETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             ccccccccchheeeecccCccccc
Confidence            22 255666777777777777655

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=5e-09  Score=72.84  Aligned_cols=80  Identities=26%  Similarity=0.365  Sum_probs=54.2

Q ss_pred             ccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCC-CCC-CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEcCC
Q psy8464          20 IKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLT-SLK-GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNLCG   95 (111)
Q Consensus        20 l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~-~l~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~   95 (111)
                      ++.|++++|.+.. +|..+..+.+|+.|++++|.+. .+| .+..+.+|+.|++++|.+...++ .++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            5566777777766 6666677777777777777775 355 56666777777777777764333 366777777777777


Q ss_pred             CCCC
Q psy8464          96 NRIK   99 (111)
Q Consensus        96 n~l~   99 (111)
                      |.++
T Consensus       500 N~l~  503 (623)
T PLN03150        500 NSLS  503 (623)
T ss_pred             Cccc
Confidence            7665

>KOG0472|consensus

Probab=98.91  E-value=5e-11  Score=77.81  Aligned_cols=38  Identities=11%  Similarity=0.115  Sum_probs=14.5

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS   55 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~   55 (111)
                      ..++.+|.-.|-+..+|...+.+..|..+++..|.+..
T Consensus       183 ~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~  220 (565)
T KOG0472|consen  183 KRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF  220 (565)
T ss_pred             HHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc
Confidence            33333333333333333333333333333333333333

>KOG0472|consensus

Probab=98.89  E-value=5.2e-10  Score=73.20  Aligned_cols=95  Identities=22%  Similarity=0.306  Sum_probs=77.0

Q ss_pred             CCCCCCCC-cccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC------------------------
Q psy8464           3 SNLPFFEP-DTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK------------------------   57 (111)
Q Consensus         3 ~~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~------------------------   57 (111)
                      +|...+++ .+..+  +.++.+++++|-+.++|..++.+..|+.++++.|++..+|                        
T Consensus       421 nn~isfv~~~l~~l--~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  421 NNKISFVPLELSQL--QKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             cCccccchHHHHhh--hcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh
Confidence            33444444 34445  7888899999999998888888888999999888875432                        


Q ss_pred             -CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCC
Q psy8464          58 -GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        58 -~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~   99 (111)
                       ++..+.+|..|++..|.+..+++.++.+.+++++.+.+|.++
T Consensus       499 ~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence             245678999999999999998888999999999999999997

>KOG1259|consensus

Probab=98.83  E-value=4.4e-10  Score=71.39  Aligned_cols=86  Identities=24%  Similarity=0.295  Sum_probs=66.5

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC-CCCCCcEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ-SSPKLAYLNLCGN   96 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~~n   96 (111)
                      ..++++|+++|.|+.+..+..-.+.++.++++.|++..+..+..+.+|+.|++++|.+..+ ..+. .+-+..+|.+++|
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhh
Confidence            6788999999999998888777889999999999998887778888999999999988762 2222 4445566666666


Q ss_pred             CCCCCcCC
Q psy8464          97 RIKDLETL  104 (111)
Q Consensus        97 ~l~~~~~~  104 (111)
                      .+.+++++
T Consensus       363 ~iE~LSGL  370 (490)
T KOG1259|consen  363 KIETLSGL  370 (490)
T ss_pred             hHhhhhhh
Confidence            66555443

>PLN03150 hypothetical protein; Provisional

Probab=98.83  E-value=2.2e-08  Score=69.71  Aligned_cols=89  Identities=21%  Similarity=0.332  Sum_probs=73.1

Q ss_pred             CCCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCcccc-c
Q psy8464           7 FFEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGLNV-L   82 (111)
Q Consensus         7 ~~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~~~-~   82 (111)
                      .+|+++..+  +.++.|++++|.+.. +|..++.+..|+.|++++|.++. +| .+..+.+|+.|++++|.+....|. +
T Consensus       433 ~ip~~i~~L--~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        433 FIPNDISKL--RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             cCCHHHhCC--CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence            466666666  899999999999997 99889999999999999999985 66 688899999999999998854443 5


Q ss_pred             CC-CCCCcEEEcCCCC
Q psy8464          83 QS-SPKLAYLNLCGNR   97 (111)
Q Consensus        83 ~~-~~~L~~l~l~~n~   97 (111)
                      +. ...+..+++.+|.
T Consensus       511 ~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        511 GGRLLHRASFNFTDNA  526 (623)
T ss_pred             hhccccCceEEecCCc
Confidence            43 3456678888775

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.80  E-value=1e-08  Score=47.33  Aligned_cols=42  Identities=38%  Similarity=0.519  Sum_probs=31.4

Q ss_pred             CCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCCCCcCCC
Q psy8464          64 ALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLE  105 (111)
Q Consensus        64 ~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  105 (111)
                      +|++|++++|+++++++.++.+++|+.+++++|.+++++.+.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l~   43 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPLS   43 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGGT
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCCC
Confidence            678888888888875555888888888888888888776543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.70  E-value=3e-08  Score=45.73  Aligned_cols=39  Identities=26%  Similarity=0.411  Sum_probs=25.5

Q ss_pred             CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC
Q psy8464          19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK   57 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~   57 (111)
                      ++++|++++|+|+.+|..+..+++|+.+++++|.++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            567777777777777766667777777777777666543

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.70  E-value=1.3e-07  Score=66.95  Aligned_cols=55  Identities=31%  Similarity=0.407  Sum_probs=26.7

Q ss_pred             ccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCCCC
Q psy8464          43 LKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        43 l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      |+.+++++|.+..+| .+.  ..|+.|+++.|++..+++.+.  ..|+.|++++|.++.+
T Consensus       243 L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~L  298 (754)
T PRK15370        243 IQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTL  298 (754)
T ss_pred             ccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccC
Confidence            444444444444433 111  245566666666554333222  3566666666666544

>KOG1644|consensus

Probab=98.65  E-value=5.6e-08  Score=58.45  Aligned_cols=91  Identities=30%  Similarity=0.423  Sum_probs=58.9

Q ss_pred             CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC-CCCCCcEEEcCCCC
Q psy8464          19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ-SSPKLAYLNLCGNR   97 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~   97 (111)
                      .-+.+++++.++..+...-........+|+.+|.+-.++.|+.+.+|.+|.+..|.++.+-+.+. -++.+..|.+.+|.
T Consensus        20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            34556777777766544333445566777777777766667777777777777777776555554 45567777777777


Q ss_pred             CCCCcCCCCCCC
Q psy8464          98 IKDLETLEPLFG  109 (111)
Q Consensus        98 l~~~~~~~~l~~  109 (111)
                      +..+.++..+..
T Consensus       100 i~~l~dl~pLa~  111 (233)
T KOG1644|consen  100 IQELGDLDPLAS  111 (233)
T ss_pred             hhhhhhcchhcc
Confidence            766655554443

>KOG0531|consensus

Probab=98.64  E-value=1.1e-08  Score=67.99  Aligned_cols=85  Identities=34%  Similarity=0.447  Sum_probs=70.1

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      ..++.+++.+|.|..+......+.+|+.+++++|.+..+.++..+..|+.|++.+|.+.. .+.+..+..|+.+++++|.
T Consensus        95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~-~~~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISD-ISGLESLKSLKLLDLSYNR  173 (414)
T ss_pred             cceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchh-ccCCccchhhhcccCCcch
Confidence            778888999999988777557788899999999999888877777788899999999887 5566667888888888888


Q ss_pred             CCCCcC
Q psy8464          98 IKDLET  103 (111)
Q Consensus        98 l~~~~~  103 (111)
                      +..+..
T Consensus       174 i~~ie~  179 (414)
T KOG0531|consen  174 IVDIEN  179 (414)
T ss_pred             hhhhhh
Confidence            877655

>KOG0618|consensus

Probab=98.63  E-value=9.9e-10  Score=77.62  Aligned_cols=81  Identities=28%  Similarity=0.395  Sum_probs=42.6

Q ss_pred             ccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc------------------
Q psy8464          20 IKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG------------------   78 (111)
Q Consensus        20 l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~------------------   78 (111)
                      ++.|.+.+|.+++ .-..+..+.+|++|++++|+++.+|  .+.++..|++|++++|+++.+                  
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC
Confidence            4444455555554 2222244555555555555555555  344444555555555554442                  


Q ss_pred             ----ccccCCCCCCcEEEcCCCCCCC
Q psy8464          79 ----LNVLQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        79 ----~~~~~~~~~L~~l~l~~n~l~~  100 (111)
                          .|++..++.|+.++++.|.++.
T Consensus       441 ~l~~fPe~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  441 QLLSFPELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             ceeechhhhhcCcceEEecccchhhh
Confidence                2355566777777777777764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.61  E-value=8.6e-08  Score=67.98  Aligned_cols=77  Identities=27%  Similarity=0.263  Sum_probs=48.3

Q ss_pred             CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCC
Q psy8464          19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRI   98 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l   98 (111)
                      .++.|++++|.++.+|..   ...++.+++++|.++.+|.+  ...|+.|++++|++..++..+..++.+..+++++|.+
T Consensus       383 ~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        383 GLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             ccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence            345555555555554432   23455666666666655532  2356667777777776555577788888889988888


Q ss_pred             CC
Q psy8464          99 KD  100 (111)
Q Consensus        99 ~~  100 (111)
                      ++
T Consensus       458 s~  459 (788)
T PRK15387        458 SE  459 (788)
T ss_pred             Cc
Confidence            74

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.59  E-value=3.5e-07  Score=64.91  Aligned_cols=90  Identities=31%  Similarity=0.297  Sum_probs=71.2

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNV   81 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~   81 (111)
                      ..+..+|..++    +.++.|++++|.++.+|..+.  .+|+.|++++|.++.+| .+.  ..|+.|++++|.+..++..
T Consensus       188 ~~LtsLP~~Ip----~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~  259 (754)
T PRK15370        188 LGLTTIPACIP----EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPER  259 (754)
T ss_pred             CCcCcCCcccc----cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChh
Confidence            35667776542    679999999999999887653  58999999999999888 343  4789999999999875544


Q ss_pred             cCCCCCCcEEEcCCCCCCCCc
Q psy8464          82 LQSSPKLAYLNLCGNRIKDLE  102 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~~~~  102 (111)
                      +.  ..|+.|++++|.++.++
T Consensus       260 l~--s~L~~L~Ls~N~L~~LP  278 (754)
T PRK15370        260 LP--SALQSLDLFHNKISCLP  278 (754)
T ss_pred             Hh--CCCCEEECcCCccCccc
Confidence            43  47999999999998764

>KOG1259|consensus

Probab=98.59  E-value=5.3e-09  Score=66.60  Aligned_cols=84  Identities=26%  Similarity=0.320  Sum_probs=51.3

Q ss_pred             CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc--cccCCCCCCcEEEcCCC
Q psy8464          19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL--NVLQSSPKLAYLNLCGN   96 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n   96 (111)
                      +++.||+++|.++.+.++-.++.+++.+.+++|.+.++.++.++=+|..|++++|++..+-  ..+|.+|.|+++.+.+|
T Consensus       330 ~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  330 QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence            4444444554444444444444455555555555554445555567778888888887632  23778888888888888


Q ss_pred             CCCCCc
Q psy8464          97 RIKDLE  102 (111)
Q Consensus        97 ~l~~~~  102 (111)
                      .++.+.
T Consensus       410 Pl~~~v  415 (490)
T KOG1259|consen  410 PLAGSV  415 (490)
T ss_pred             Cccccc
Confidence            887653

>KOG4237|consensus

Probab=98.57  E-value=1.8e-09  Score=70.44  Aligned_cols=91  Identities=20%  Similarity=0.218  Sum_probs=63.5

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcC-CCcCCC
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELS-DNRISG   77 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~-~n~~~~   77 (111)
                      ...|+++|.+++    ++.+.+.+.-|+|+.+|+ .|..+..|+.+++++|.++.+.  .|.++..+..|.+- +|+|++
T Consensus        55 ~~GL~eVP~~LP----~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   55 GKGLTEVPANLP----PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             CCCcccCcccCC----CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            457788887644    567888999999999665 4588889999999999998876  68888777655554 488877


Q ss_pred             cccc-cCCCCCCcEEEcCCC
Q psy8464          78 GLNV-LQSSPKLAYLNLCGN   96 (111)
Q Consensus        78 ~~~~-~~~~~~L~~l~l~~n   96 (111)
                      ++.. |+.+..++.|.+.-|
T Consensus       131 l~k~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChh
Confidence            5433 444444444444333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.57  E-value=2.6e-08  Score=65.68  Aligned_cols=92  Identities=26%  Similarity=0.311  Sum_probs=48.9

Q ss_pred             CCCCCCCCcccccCcC-CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCC-CCCCCCEEEcCCCcCCCccc
Q psy8464           3 SNLPFFEPDTERMGKI-QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFP-ELPALTRLELSDNRISGGLN   80 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~-~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~-~l~~L~~l~l~~n~~~~~~~   80 (111)
                      +++.++|+.....  . +++.+++++|.+..++...+.++.|+.++++.|.+..++... ....++.+++++|++..+++
T Consensus       126 n~i~~i~~~~~~~--~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~  203 (394)
T COG4886         126 NNITDIPPLIGLL--KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP  203 (394)
T ss_pred             cccccCccccccc--hhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch
Confidence            3444455443333  2 566666666666665544555666666666666666555322 45555666666666655333


Q ss_pred             ccCCCCCCcEEEcCCC
Q psy8464          81 VLQSSPKLAYLNLCGN   96 (111)
Q Consensus        81 ~~~~~~~L~~l~l~~n   96 (111)
                      .......|..+.+++|
T Consensus       204 ~~~~~~~L~~l~~~~N  219 (394)
T COG4886         204 EIELLSALEELDLSNN  219 (394)
T ss_pred             hhhhhhhhhhhhhcCC
Confidence            3333334555555555

>KOG0618|consensus

Probab=98.56  E-value=6.4e-09  Score=73.70  Aligned_cols=81  Identities=32%  Similarity=0.424  Sum_probs=55.4

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc-cccCCCCCCcEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNLCGN   96 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n   96 (111)
                      +.++.|+++||+++.+|+....+..|+++..-+|.+..+|.+..++.|+.+|++.|.++... +.....+.|++|++++|
T Consensus       407 e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  407 EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence            45555555555555555555555555555555555555666677889999999999987632 33334589999999999


Q ss_pred             CC
Q psy8464          97 RI   98 (111)
Q Consensus        97 ~l   98 (111)
                      .-
T Consensus       487 ~~  488 (1081)
T KOG0618|consen  487 TR  488 (1081)
T ss_pred             cc
Confidence            74

>KOG4237|consensus

Probab=98.55  E-value=2.6e-08  Score=65.18  Aligned_cols=82  Identities=27%  Similarity=0.249  Sum_probs=69.5

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      ++++.|++++|+|+. -++.|.+..+++.+.+..|.+..+.  .|.++..|+.|++.+|+++.+.+. |....+|.++++
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            789999999999999 5666788999999999999998876  688889999999999999875554 667888999999


Q ss_pred             CCCCCC
Q psy8464          94 CGNRIK   99 (111)
Q Consensus        94 ~~n~l~   99 (111)
                      -.|.+.
T Consensus       354 ~~Np~~  359 (498)
T KOG4237|consen  354 LSNPFN  359 (498)
T ss_pred             ccCccc
Confidence            888774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.53  E-value=4.9e-07  Score=64.26  Aligned_cols=48  Identities=27%  Similarity=0.246  Sum_probs=27.0

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK   57 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~   57 (111)
                      ++|..+|+.+.    ..++.|++.+|.++.+|..   .++|+.|++++|.++.+|
T Consensus       211 ~~LtsLP~~l~----~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP  258 (788)
T PRK15387        211 SGLTTLPDCLP----AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLP  258 (788)
T ss_pred             CCCCcCCcchh----cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCccc
Confidence            45666666543    3456666666666665532   345666666666655544

>KOG0532|consensus

Probab=98.50  E-value=1.9e-08  Score=68.37  Aligned_cols=96  Identities=20%  Similarity=0.206  Sum_probs=65.9

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCccc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLN   80 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~   80 (111)
                      |++++.+|+++...  ..+..+|.+.|.+..+|...+.+.+++.+.+..|.+..+| .+.. -.|..||++.|++..++-
T Consensus       152 NNkl~~lp~~ig~~--~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv  228 (722)
T KOG0532|consen  152 NNKLTSLPEEIGLL--PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPV  228 (722)
T ss_pred             cCccccCCcccccc--hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecch
Confidence            56677777777633  6667777777777777777777777777777777766666 4442 235667777777777554


Q ss_pred             ccCCCCCCcEEEcCCCCCCC
Q psy8464          81 VLQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        81 ~~~~~~~L~~l~l~~n~l~~  100 (111)
                      .|..+..|++|-+.+|.+++
T Consensus       229 ~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhhheeeeeccCCCCC
Confidence            57777777777777777764

>KOG0532|consensus

Probab=98.49  E-value=7.6e-09  Score=70.22  Aligned_cols=94  Identities=22%  Similarity=0.238  Sum_probs=63.8

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCccccc
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVL   82 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~   82 (111)
                      .+..+|+.++.++   ++.+.+++|+++.+|..++....+..++.+.|.+.++| .+..+.+|+.+.+..|.+..+++++
T Consensus       132 qlS~lp~~lC~lp---Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El  208 (722)
T KOG0532|consen  132 QLSHLPDGLCDLP---LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL  208 (722)
T ss_pred             hhhcCChhhhcCc---ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH
Confidence            3444555554443   66666677777766666666666666777777777766 5666777777777777777766666


Q ss_pred             CCCCCCcEEEcCCCCCCCC
Q psy8464          83 QSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        83 ~~~~~L~~l~l~~n~l~~~  101 (111)
                      ..++ |..|++++|++..+
T Consensus       209 ~~Lp-Li~lDfScNkis~i  226 (722)
T KOG0532|consen  209 CSLP-LIRLDFSCNKISYL  226 (722)
T ss_pred             hCCc-eeeeecccCceeec
Confidence            6544 77899999998876

>KOG1859|consensus

Probab=98.46  E-value=5.1e-09  Score=72.98  Aligned_cols=89  Identities=22%  Similarity=0.281  Sum_probs=54.4

Q ss_pred             CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC--CCCCCcEEEcCCC
Q psy8464          19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ--SSPKLAYLNLCGN   96 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~--~~~~L~~l~l~~n   96 (111)
                      .+...++++|.+..+.....-++.++.|++++|+++.+..+..+++|++||+++|.+.. .+.++  .|+ |..|++++|
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhcc-ccccchhhhh-heeeeeccc
Confidence            45556666676666666666666677777777776665555666667777777776665 33333  333 666666666


Q ss_pred             CCCCCcCCCCCCC
Q psy8464          97 RIKDLETLEPLFG  109 (111)
Q Consensus        97 ~l~~~~~~~~l~~  109 (111)
                      -++.+.++..+++
T Consensus       243 ~l~tL~gie~Lks  255 (1096)
T KOG1859|consen  243 ALTTLRGIENLKS  255 (1096)
T ss_pred             HHHhhhhHHhhhh
Confidence            6665555444443

>PLN03210 Resistant to P

Probab=98.37  E-value=4.9e-06  Score=61.82  Aligned_cols=79  Identities=16%  Similarity=0.174  Sum_probs=51.9

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEeccccc-CCCCCCCCCCCCCCEEEcCCCc-CCCcccccCCCCCCcEEEcCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVG-LTSLKGFPELPALTRLELSDNR-ISGGLNVLQSSPKLAYLNLCG   95 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~-~~~l~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~L~~l~l~~   95 (111)
                      .+++.|++.++.+..++..+..+.+|+.++++++. +..+|.+..+++|+.|+++++. +..++..++.+++|+.|++++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            56777777777777766666677777777777653 4556666666777777777654 333344466667777777766


Q ss_pred             C
Q psy8464          96 N   96 (111)
Q Consensus        96 n   96 (111)
                      |
T Consensus       691 c  691 (1153)
T PLN03210        691 C  691 (1153)
T ss_pred             C
Confidence            4

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.34  E-value=4.5e-07  Score=59.91  Aligned_cols=90  Identities=26%  Similarity=0.384  Sum_probs=43.9

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC------------------------CCCCCCCCCEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK------------------------GFPELPALTRLELSDN   73 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~------------------------~~~~l~~L~~l~l~~n   73 (111)
                      +.++.|+++.|.+..++...+....++.+++++|.+..+|                        .+..+..+..+.+..|
T Consensus       163 ~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n  242 (394)
T COG4886         163 PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN  242 (394)
T ss_pred             ccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc
Confidence            4455555555555554444334444444555555444443                        2233333334444444


Q ss_pred             cCCCcccccCCCCCCcEEEcCCCCCCCCcCCCCC
Q psy8464          74 RISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL  107 (111)
Q Consensus        74 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~l  107 (111)
                      ++...+..++.++.++++++++|.++.+..+..+
T Consensus       243 ~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~  276 (394)
T COG4886         243 KLEDLPESIGNLSNLETLDLSNNQISSISSLGSL  276 (394)
T ss_pred             eeeeccchhccccccceecccccccccccccccc
Confidence            4433222344555677777777777666544333

>KOG0531|consensus

Probab=98.32  E-value=1.9e-07  Score=62.23  Aligned_cols=92  Identities=32%  Similarity=0.376  Sum_probs=75.0

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCC-CCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG-FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN   96 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n   96 (111)
                      ..+..+.++.|.+.........+..++.+++.+|.+..+.. +..+.+|++|++++|.+.. ...+..++.|+.|++.+|
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-LEGLSTLTLLKELNLSGN  150 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc-ccchhhccchhhheeccC
Confidence            34455667777777755556788999999999999999886 8889999999999999988 555677777999999999


Q ss_pred             CCCCCcCCCCCCCC
Q psy8464          97 RIKDLETLEPLFGS  110 (111)
Q Consensus        97 ~l~~~~~~~~l~~l  110 (111)
                      .++.+..+..+..+
T Consensus       151 ~i~~~~~~~~l~~L  164 (414)
T KOG0531|consen  151 LISDISGLESLKSL  164 (414)
T ss_pred             cchhccCCccchhh
Confidence            99998877665544

>KOG1859|consensus

Probab=98.26  E-value=1.6e-08  Score=70.62  Aligned_cols=89  Identities=24%  Similarity=0.265  Sum_probs=72.5

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCC-CCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-LPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN   96 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~-l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n   96 (111)
                      +.++.|+++.|+++++. .+..+++|+.||++.|.+..+|.+.. -.+|+.|.+.+|.++. .-.+..+.+|..|++++|
T Consensus       187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             HHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHh
Confidence            67888999999999977 55889999999999999999984332 1349999999999887 445678889999999999


Q ss_pred             CCCCCcCCCCCC
Q psy8464          97 RIKDLETLEPLF  108 (111)
Q Consensus        97 ~l~~~~~~~~l~  108 (111)
                      .+.+.+.+..+.
T Consensus       265 ll~~hseL~pLw  276 (1096)
T KOG1859|consen  265 LLSEHSELEPLW  276 (1096)
T ss_pred             hhhcchhhhHHH
Confidence            998776665543

>KOG4579|consensus

Probab=98.25  E-value=6.9e-08  Score=55.03  Aligned_cols=59  Identities=31%  Similarity=0.386  Sum_probs=26.3

Q ss_pred             CCccEEecccccCCCCC-CC-CCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCC
Q psy8464          41 TNLKILSAINVGLTSLK-GF-PELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        41 ~~l~~l~l~~~~~~~l~-~~-~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~   99 (111)
                      .++..+++++|.++.+| .| ..++.++.+++..|.+.+++.++..++.|+.++++.|.+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc
Confidence            33444445555544444 21 1223444444555555444434444444555555544443

>PLN03210 Resistant to P

Probab=98.22  E-value=9.7e-06  Score=60.30  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=69.6

Q ss_pred             CCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCC
Q psy8464           8 FEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSP   86 (111)
Q Consensus         8 ~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~   86 (111)
                      +|.++..++ ..++.|.+.++.+..+|..+ ...+|+.+++.++.+..++ ++..+.+|+.++++++.....++.+..++
T Consensus       580 lp~~~~~lp-~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~  657 (1153)
T PLN03210        580 LPEGFDYLP-PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMAT  657 (1153)
T ss_pred             cCcchhhcC-cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCC
Confidence            455544443 67899999999998888876 4688999999999998887 67788999999998765333356677889


Q ss_pred             CCcEEEcCCCC
Q psy8464          87 KLAYLNLCGNR   97 (111)
Q Consensus        87 ~L~~l~l~~n~   97 (111)
                      .|+.|++.+|.
T Consensus       658 ~Le~L~L~~c~  668 (1153)
T PLN03210        658 NLETLKLSDCS  668 (1153)
T ss_pred             cccEEEecCCC
Confidence            99999998864

syringae 6; Provisional

>KOG2739|consensus

Probab=98.14  E-value=1.1e-06  Score=54.54  Aligned_cols=91  Identities=59%  Similarity=0.922  Sum_probs=61.7

Q ss_pred             CccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCC--cCCCcccc-cCCCCCCcEEEc
Q psy8464          19 QIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDN--RISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        19 ~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n--~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      .++.+.+..+.-..  +......+..++.+.+.+.+++++.+++.+++|+.|.++.|  .+....+. ...++.|+++++
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l   98 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL   98 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence            34444454433333  45555666778888888888888878888899999999988  44332333 335689999999


Q ss_pred             CCCCCCCCcCCCCCCC
Q psy8464          94 CGNRIKDLETLEPLFG  109 (111)
Q Consensus        94 ~~n~l~~~~~~~~l~~  109 (111)
                      +.|+++.+..+..++.
T Consensus        99 s~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   99 SGNKIKDLSTLRPLKE  114 (260)
T ss_pred             cCCccccccccchhhh
Confidence            9999887655554443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.11  E-value=4.2e-06  Score=53.57  Aligned_cols=82  Identities=27%  Similarity=0.308  Sum_probs=37.3

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCC-----CC-CCCCCCCCCEEEcCCCcCCCcc-----cc
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTS-----LK-GFPELPALTRLELSDNRISGGL-----NV   81 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~-----l~-~~~~l~~L~~l~l~~n~~~~~~-----~~   81 (111)
                      +.++.+++++|.++.     +...+..+.+++.+++++|.++.     ++ .+...++|+.+++++|.+....     ..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            345555555555552     22233344455555555555542     11 1223345555555555543210     11


Q ss_pred             cCCCCCCcEEEcCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~   99 (111)
                      +..+++|+++++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            234455555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4579|consensus

Probab=98.06  E-value=4.9e-07  Score=51.62  Aligned_cols=84  Identities=18%  Similarity=0.253  Sum_probs=71.5

Q ss_pred             CCccEEEcCCCCCCChhhhh-hcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCC
Q psy8464          18 IQIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCG   95 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~-~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~   95 (111)
                      .+++.+++++|.+...|..| ..++.++.+++++|.++.+| .+..++.|+.++++.|++...+..+..+.++-.|+..+
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence            46778999999999988877 66778999999999999999 78889999999999999987666666777888888888


Q ss_pred             CCCCCC
Q psy8464          96 NRIKDL  101 (111)
Q Consensus        96 n~l~~~  101 (111)
                      |.+..+
T Consensus       133 na~~ei  138 (177)
T KOG4579|consen  133 NARAEI  138 (177)
T ss_pred             CccccC
Confidence            877655

>KOG4658|consensus

Probab=97.86  E-value=7.1e-06  Score=59.40  Aligned_cols=79  Identities=20%  Similarity=0.272  Sum_probs=48.2

Q ss_pred             CCccEEEcCCCCC-CChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccC-CCCCCcEEEcC
Q psy8464          18 IQIKELNLDNCRS-TNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQ-SSPKLAYLNLC   94 (111)
Q Consensus        18 ~~l~~l~l~~n~i-~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~   94 (111)
                      +.++.||+++|.- ..+|..++.+.+|++|++.+..+..+| ++..+..|.+|++..+.....++.+. .+++|+++.+.
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            6667777775443 337777777777777777777777766 66666667777766554332233322 46666666664


Q ss_pred             CC
Q psy8464          95 GN   96 (111)
Q Consensus        95 ~n   96 (111)
                      ..
T Consensus       651 ~s  652 (889)
T KOG4658|consen  651 RS  652 (889)
T ss_pred             cc
Confidence            43

>KOG1644|consensus

Probab=97.85  E-value=3.4e-05  Score=46.77  Aligned_cols=79  Identities=29%  Similarity=0.420  Sum_probs=35.6

Q ss_pred             ccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCC-CCCCCCEEEcCCCcCCCcc--cccCCCCCCcEEEcCC
Q psy8464          20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFP-ELPALTRLELSDNRISGGL--NVLQSSPKLAYLNLCG   95 (111)
Q Consensus        20 l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~-~l~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~   95 (111)
                      ...+|+++|.+-.++.. ..+..|..|.+.+|+++.+. .+. .++.++.|.+.+|.+..+-  ..+..|++|+.|.+-+
T Consensus        44 ~d~iDLtdNdl~~l~~l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDNL-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             cceecccccchhhcccC-CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            33445555555443322 34445555555555555443 221 1234455555555544321  1233455555555555


Q ss_pred             CCCC
Q psy8464          96 NRIK   99 (111)
Q Consensus        96 n~l~   99 (111)
                      |.++
T Consensus       123 Npv~  126 (233)
T KOG1644|consen  123 NPVE  126 (233)
T ss_pred             Cchh
Confidence            5444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.79  E-value=1.8e-05  Score=50.69  Aligned_cols=59  Identities=24%  Similarity=0.262  Sum_probs=26.6

Q ss_pred             CCccEEecccccCCC-----CC-CCCCCCCCCEEEcCCCcCCCc-----ccccCCCCCCcEEEcCCCCCC
Q psy8464          41 TNLKILSAINVGLTS-----LK-GFPELPALTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        41 ~~l~~l~l~~~~~~~-----l~-~~~~l~~L~~l~l~~n~~~~~-----~~~~~~~~~L~~l~l~~n~l~   99 (111)
                      ++++.+++++|.++.     +. .+..+.+++.|++++|.+.+.     ...+...+.|+.+++++|.+.
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            445555555555442     11 233334555555555555421     111223345666666655553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207|consensus

Probab=97.66  E-value=2.2e-05  Score=52.39  Aligned_cols=90  Identities=30%  Similarity=0.464  Sum_probs=49.2

Q ss_pred             CCccEEEcCCCCCCC--hhhhhhcCCCccEEeccccc------------------------CCCCC---CCCCCCCCCEE
Q psy8464          18 IQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVG------------------------LTSLK---GFPELPALTRL   68 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~------------------------~~~l~---~~~~l~~L~~l   68 (111)
                      +.++.|.++.|.++.  +......+++++.+++..|.                        +-..+   ....++.|..|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            667778888887776  33344556666666666663                        22222   12233444445


Q ss_pred             EcCCCcCCCc--ccc-----cCCCCCCcEEEcCCCCCCCCcCCCCC
Q psy8464          69 ELSDNRISGG--LNV-----LQSSPKLAYLNLCGNRIKDLETLEPL  107 (111)
Q Consensus        69 ~l~~n~~~~~--~~~-----~~~~~~L~~l~l~~n~l~~~~~~~~l  107 (111)
                      .++.+.+.++  ++.     -..+++|++|++..|++.+++.+..+
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l  322 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL  322 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence            5555554432  111     12456677777777777666555444

>KOG3207|consensus

Probab=97.65  E-value=2.9e-05  Score=51.81  Aligned_cols=84  Identities=29%  Similarity=0.326  Sum_probs=56.6

Q ss_pred             CCccEEEcCCCCCCC-hhhhh-hcCCCccEEecccccCCC---------CCC------------------CCCCCCCCEE
Q psy8464          18 IQIKELNLDNCRSTN-IAALT-SEFTNLKILSAINVGLTS---------LKG------------------FPELPALTRL   68 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~-~~~~~l~~l~l~~~~~~~---------l~~------------------~~~l~~L~~l   68 (111)
                      ++++.|+++.|++.. ..... ..+.+++.|.++.+++++         +|.                  ..-++.|+.|
T Consensus       172 p~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L  251 (505)
T KOG3207|consen  172 PSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL  251 (505)
T ss_pred             ccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence            789999999999977 22222 467889999999999986         121                  0113456667


Q ss_pred             EcCCCcCCCcc--cccCCCCCCcEEEcCCCCCCCC
Q psy8464          69 ELSDNRISGGL--NVLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        69 ~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ++++|++-+..  ..++.++.|..++++.+.+.++
T Consensus       252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             cccCCcccccccccccccccchhhhhccccCcchh
Confidence            77766665533  2355677777777777776655

>KOG4658|consensus

Probab=97.63  E-value=3.1e-05  Score=56.26  Aligned_cols=80  Identities=29%  Similarity=0.291  Sum_probs=64.7

Q ss_pred             CCccEEEcCCCC--CCChhh-hhhcCCCccEEeccccc-CCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEE
Q psy8464          18 IQIKELNLDNCR--STNIAA-LTSEFTNLKILSAINVG-LTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLN   92 (111)
Q Consensus        18 ~~l~~l~l~~n~--i~~~~~-~~~~~~~l~~l~l~~~~-~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~   92 (111)
                      +.+++|-+.+|.  +..++. .|..++.|++||+++|. +..+| .+..+.+|++|++++..+..+|..++.+..|.+|+
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN  624 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence            468888888886  555444 46889999999999654 45688 67788999999999999998777789999999999


Q ss_pred             cCCCC
Q psy8464          93 LCGNR   97 (111)
Q Consensus        93 l~~n~   97 (111)
                      +..+.
T Consensus       625 l~~~~  629 (889)
T KOG4658|consen  625 LEVTG  629 (889)
T ss_pred             ccccc
Confidence            98764

>KOG2982|consensus

Probab=97.40  E-value=0.00012  Score=47.19  Aligned_cols=82  Identities=26%  Similarity=0.370  Sum_probs=54.5

Q ss_pred             CCccEEEcCCCCCCCh---hhhhhcCCCccEEecccccCCC-CCCCC-CCCCCCEEEcCCCcCCCcc--cccCCCCCCcE
Q psy8464          18 IQIKELNLDNCRSTNI---AALTSEFTNLKILSAINVGLTS-LKGFP-ELPALTRLELSDNRISGGL--NVLQSSPKLAY   90 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~---~~~~~~~~~l~~l~l~~~~~~~-l~~~~-~l~~L~~l~l~~n~~~~~~--~~~~~~~~L~~   90 (111)
                      +.++.+|+.+|.|++.   ......+++++.++++.|.+++ +...+ ...+++.+.+.+..+.+..  .....+|.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            5677889999999883   3344778889999999998875 22332 5567777777766654321  11335666666


Q ss_pred             EEcCCCCCC
Q psy8464          91 LNLCGNRIK   99 (111)
Q Consensus        91 l~l~~n~l~   99 (111)
                      +.++.|.+.
T Consensus       151 lHmS~N~~r  159 (418)
T KOG2982|consen  151 LHMSDNSLR  159 (418)
T ss_pred             hhhccchhh
Confidence            777666443

>KOG2123|consensus

Probab=97.34  E-value=6.5e-06  Score=52.25  Aligned_cols=80  Identities=26%  Similarity=0.258  Sum_probs=63.2

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc--cCCCCCCcEEEcCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV--LQSSPKLAYLNLCG   95 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~--~~~~~~L~~l~l~~   95 (111)
                      ..++.|++=||.++++.-. .+|+.+++|.++-|.++++..+..|.+|++|++..|.|.++.+-  +.++++|+.|-+..
T Consensus        19 ~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            4567788888888885543 67889999999999999888888888999999999998874332  55888888888877


Q ss_pred             CCC
Q psy8464          96 NRI   98 (111)
Q Consensus        96 n~l   98 (111)
                      |.=
T Consensus        98 NPC  100 (388)
T KOG2123|consen   98 NPC  100 (388)
T ss_pred             CCc
Confidence            654

>KOG3665|consensus

Probab=97.33  E-value=0.00033  Score=49.90  Aligned_cols=81  Identities=22%  Similarity=0.371  Sum_probs=42.8

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC---CCCCCCCCCEEEcCCCcCCCcc-------cccCCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK---GFPELPALTRLELSDNRISGGL-------NVLQSSPK   87 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~---~~~~l~~L~~l~l~~n~~~~~~-------~~~~~~~~   87 (111)
                      ++|..||++++.++.+ .++..+++|+.|.+.+-.+....   .+..+++|+.||+|..+.....       +....+|.
T Consensus       173 pNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe  251 (699)
T KOG3665|consen  173 PNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE  251 (699)
T ss_pred             CccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence            4555555555555554 22245555555555444444322   3455677777777755443211       12224677


Q ss_pred             CcEEEcCCCCCC
Q psy8464          88 LAYLNLCGNRIK   99 (111)
Q Consensus        88 L~~l~l~~n~l~   99 (111)
                      |+.|+.+++.+.
T Consensus       252 LrfLDcSgTdi~  263 (699)
T KOG3665|consen  252 LRFLDCSGTDIN  263 (699)
T ss_pred             ccEEecCCcchh
Confidence            777777766553

>KOG3665|consensus

Probab=97.29  E-value=0.00017  Score=51.35  Aligned_cols=82  Identities=20%  Similarity=0.286  Sum_probs=60.5

Q ss_pred             CCccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc--cccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL--NVLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l   93 (111)
                      |.++.|.+.+-.+..  .......+++|..||+++.+++.+.+.+.+++|+.|.+.+=.+....  ..+..++.|+.|++
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDI  227 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDI  227 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeec
Confidence            778888888876655  44455778888889999988888777778888888877766665421  23567888999999


Q ss_pred             CCCCCC
Q psy8464          94 CGNRIK   99 (111)
Q Consensus        94 ~~n~l~   99 (111)
                      +.....
T Consensus       228 S~~~~~  233 (699)
T KOG3665|consen  228 SRDKNN  233 (699)
T ss_pred             cccccc
Confidence            876543

>KOG2123|consensus

Probab=97.27  E-value=2.5e-06  Score=54.03  Aligned_cols=71  Identities=35%  Similarity=0.420  Sum_probs=58.7

Q ss_pred             cCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCCCCcCCCCCCCC
Q psy8464          39 EFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS  110 (111)
Q Consensus        39 ~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~l~~l  110 (111)
                      ++.+.++|++.+++++.+.-..+++.|+.|.++-|+++. ...+..|.+|+.+++..|.|.++..+..+++|
T Consensus        17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknl   87 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNL   87 (388)
T ss_pred             HHHHhhhhcccCCCccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence            466788899999999887656678899999999999998 55678899999999999999988665555443

>KOG2739|consensus

Probab=97.10  E-value=0.0003  Score=44.06  Aligned_cols=58  Identities=26%  Similarity=0.406  Sum_probs=25.7

Q ss_pred             CCccEEEcCCC--CCCC-hhhhhhcCCCccEEecccccCCCCC---CCCCCCCCCEEEcCCCcC
Q psy8464          18 IQIKELNLDNC--RSTN-IAALTSEFTNLKILSAINVGLTSLK---GFPELPALTRLELSDNRI   75 (111)
Q Consensus        18 ~~l~~l~l~~n--~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~---~~~~l~~L~~l~l~~n~~   75 (111)
                      ++|+.|.+++|  ++.. ++......++|+.+.+++|++..+.   .++.+.+|..|++..+..
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence            34555555555  3333 3333334455555555555544322   223333444444444443

>KOG1909|consensus

Probab=96.99  E-value=0.00097  Score=43.58  Aligned_cols=83  Identities=22%  Similarity=0.240  Sum_probs=55.8

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCcCCCcc-----cc
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNRISGGL-----NV   81 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~~~~~~-----~~   81 (111)
                      +.++.+.+..|++..     +...+...+.++.+.+..|.+..=.      .+..+++|+.|++.+|-++..-     ..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            567888888888766     3334555677777777777775411      4667788888888888776421     12


Q ss_pred             cCCCCCCcEEEcCCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~~  100 (111)
                      +..++.|+.+++++|.++.
T Consensus       237 L~s~~~L~El~l~dcll~~  255 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLEN  255 (382)
T ss_pred             hcccchheeeccccccccc
Confidence            4466777888888877753

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.84  E-value=0.00036  Score=27.05  Aligned_cols=18  Identities=22%  Similarity=0.248  Sum_probs=12.0

Q ss_pred             ccEEEcCCCCCCChhhhh
Q psy8464          20 IKELNLDNCRSTNIAALT   37 (111)
Q Consensus        20 l~~l~l~~n~i~~~~~~~   37 (111)
                      +++|++++|.++.+|..+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            567777777777666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.38  E-value=0.0029  Score=22.85  Aligned_cols=15  Identities=33%  Similarity=0.614  Sum_probs=6.6

Q ss_pred             CccEEEcCCCCCCCh
Q psy8464          19 QIKELNLDNCRSTNI   33 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~   33 (111)
                      +++.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455566666665543

...

>KOG1909|consensus

Probab=96.09  E-value=0.0056  Score=40.21  Aligned_cols=59  Identities=19%  Similarity=0.247  Sum_probs=28.1

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCcCC
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNRIS   76 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~~~   76 (111)
                      +.++.+.+..|.|..     +-..+..+++|++|++..|.++.-.      .++.+++|+.++++++.+.
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            344555555555543     2223344555666666665554411      2334445555555554444

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.74  E-value=0.066  Score=36.34  Aligned_cols=32  Identities=16%  Similarity=0.248  Sum_probs=15.0

Q ss_pred             CCccEEEcCC-CCCCChhhhhhcCCCccEEecccc
Q psy8464          18 IQIKELNLDN-CRSTNIAALTSEFTNLKILSAINV   51 (111)
Q Consensus        18 ~~l~~l~l~~-n~i~~~~~~~~~~~~l~~l~l~~~   51 (111)
                      +.++.|.+++ +.++.+|+.+  ..+|+.|.+.++
T Consensus        72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             CCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            4466666654 3333344332  134555555554

>KOG2982|consensus

Probab=95.54  E-value=0.0095  Score=38.75  Aligned_cols=59  Identities=29%  Similarity=0.451  Sum_probs=45.5

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC---CCCCCCCCCEEEcCCCcCC
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK---GFPELPALTRLELSDNRIS   76 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~---~~~~l~~L~~l~l~~n~~~   76 (111)
                      +.++.|+++.|.+.. +....-...+++++.+.+..+.+-.   .+..++.++.++++.|.+.
T Consensus        97 P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen   97 PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            789999999999988 4333246678999999999987743   4566788889999988543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.50  E-value=0.025  Score=36.48  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=57.1

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCC------------CCCCCCCCCCCEEEcCCCcCCCc-c
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTS------------LKGFPELPALTRLELSDNRISGG-L   79 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~------------l~~~~~l~~L~~l~l~~n~~~~~-~   79 (111)
                      ..++.++++||.|..     +...+..-.+|+..+++.-....            ++.+-+|++++..++++|.+..- +
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            678899999999987     22333444566666665544322            12356788999999999988632 2


Q ss_pred             cc----cCCCCCCcEEEcCCCCCCCC
Q psy8464          80 NV----LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        80 ~~----~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +.    +.+...+.+|.+.+|.+..+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~  135 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPI  135 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCcc
Confidence            22    44667899999999887654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.99  E-value=0.082  Score=29.28  Aligned_cols=51  Identities=24%  Similarity=0.340  Sum_probs=18.8

Q ss_pred             CccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcC
Q psy8464          19 QIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELS   71 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~   71 (111)
                      .++.+.+.. .+..++. .|..+..++.+.+..+ +..++  .|..+..++.+.+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            455555543 3333322 2344445555555443 44443  34444455555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.94  E-value=0.14  Score=34.86  Aligned_cols=51  Identities=20%  Similarity=0.287  Sum_probs=34.7

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEeccc-ccCCCCC-CCCCCCCCCEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAIN-VGLTSLK-GFPELPALTRLELSDN   73 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~-~~~~~l~-~~~~l~~L~~l~l~~n   73 (111)
                      ..++.|++++|.+..+|..   ..+|+.|.+.+ +.++.+| .+  ...|+.|.++++
T Consensus        52 ~~l~~L~Is~c~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIESLPVL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCcccCCC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            5688899999988888732   23688888876 4445555 22  246777777766

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=94.14  E-value=0.068  Score=21.54  Aligned_cols=20  Identities=40%  Similarity=0.655  Sum_probs=12.0

Q ss_pred             CCCcEEEcCCCCCCCCcCCC
Q psy8464          86 PKLAYLNLCGNRIKDLETLE  105 (111)
Q Consensus        86 ~~L~~l~l~~n~l~~~~~~~  105 (111)
                      ..|+.|+++.|.++.+..++
T Consensus         2 ~~L~~L~L~~NkI~~IEnL~   21 (26)
T smart00365        2 TNLEELDLSQNKIKKIENLD   21 (26)
T ss_pred             CccCEEECCCCccceecCcc
Confidence            35666666666666655543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.97  E-value=0.071  Score=21.09  Aligned_cols=17  Identities=41%  Similarity=0.600  Sum_probs=9.9

Q ss_pred             CCCCEEEcCCCcCCCcc
Q psy8464          63 PALTRLELSDNRISGGL   79 (111)
Q Consensus        63 ~~L~~l~l~~n~~~~~~   79 (111)
                      .+|+.|++++|.+..++
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            35566666666666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.97  E-value=0.071  Score=21.09  Aligned_cols=17  Identities=41%  Similarity=0.600  Sum_probs=9.9

Q ss_pred             CCCCEEEcCCCcCCCcc
Q psy8464          63 PALTRLELSDNRISGGL   79 (111)
Q Consensus        63 ~~L~~l~l~~n~~~~~~   79 (111)
                      .+|+.|++++|.+..++
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            35566666666666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.56  E-value=0.31  Score=26.92  Aligned_cols=84  Identities=19%  Similarity=0.235  Sum_probs=46.4

Q ss_pred             CCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-c
Q psy8464           7 FFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-L   82 (111)
Q Consensus         7 ~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~   82 (111)
                      .++...+... ..++.+.+.++ +..++. .+..+..++.+.+.. .+..++  .|..+..++.+.+..+ +..+... +
T Consensus        25 ~I~~~~F~~~-~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f  100 (129)
T PF13306_consen   25 KIGENAFSNC-TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSF  100 (129)
T ss_dssp             EE-TTTTTT--TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTT
T ss_pred             EeChhhcccc-ccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhh
Confidence            3444433332 47889998875 666554 456676899999866 555555  5777889999999765 4443332 5


Q ss_pred             CCCCCCcEEEcCC
Q psy8464          83 QSSPKLAYLNLCG   95 (111)
Q Consensus        83 ~~~~~L~~l~l~~   95 (111)
                      ..+ .++.+.+..
T Consensus       101 ~~~-~l~~i~~~~  112 (129)
T PF13306_consen  101 SNC-NLKEINIPS  112 (129)
T ss_dssp             TT--T--EEE-TT
T ss_pred             cCC-CceEEEECC
Confidence            566 788888765

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=93.18  E-value=0.064  Score=21.63  Aligned_cols=18  Identities=33%  Similarity=0.468  Sum_probs=11.0

Q ss_pred             CCccEEEcCCCCCCChhh
Q psy8464          18 IQIKELNLDNCRSTNIAA   35 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~   35 (111)
                      ..+++|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            445666666666666554

>KOG0473|consensus

Probab=90.47  E-value=0.0031  Score=39.56  Aligned_cols=40  Identities=23%  Similarity=0.180  Sum_probs=19.9

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK   57 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~   57 (111)
                      ...+.||++.|++..+...+..+..+..++++.|.+..+|
T Consensus        42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~   81 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLP   81 (326)
T ss_pred             ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhCh
Confidence            4555666666655554444444444444445444444333

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.66  E-value=0.15  Score=19.69  Aligned_cols=14  Identities=43%  Similarity=0.729  Sum_probs=7.0

Q ss_pred             CCCcEEEcCCCCCC
Q psy8464          86 PKLAYLNLCGNRIK   99 (111)
Q Consensus        86 ~~L~~l~l~~n~l~   99 (111)
                      ++|++|++++|.++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45666666666553

...

>KOG3763|consensus

Probab=86.75  E-value=0.58  Score=33.00  Aligned_cols=60  Identities=23%  Similarity=0.233  Sum_probs=40.7

Q ss_pred             CCccEEEcCCCCCCCh---hhhhhcCCCccEEecccc--cCCCCCCCC--CCCCCCEEEcCCCcCCC
Q psy8464          18 IQIKELNLDNCRSTNI---AALTSEFTNLKILSAINV--GLTSLKGFP--ELPALTRLELSDNRISG   77 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~---~~~~~~~~~l~~l~l~~~--~~~~l~~~~--~l~~L~~l~l~~n~~~~   77 (111)
                      +.+..+++++|++..+   .......+++..|+|++|  .++.-..+.  +...|++|.+.+|++..
T Consensus       218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence            6677788888888773   334466788888999888  444322222  22457888888888764

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.28  E-value=0.86  Score=18.41  Aligned_cols=15  Identities=27%  Similarity=0.470  Sum_probs=11.6

Q ss_pred             CCccEEEcCCCCCCC
Q psy8464          18 IQIKELNLDNCRSTN   32 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~   32 (111)
                      +.+++|++++|.+..
T Consensus         2 ~~L~~LdL~~N~i~~   16 (28)
T smart00368        2 PSLRELDLSNNKLGD   16 (28)
T ss_pred             CccCEEECCCCCCCH
Confidence            467888888888865

>KOG3763|consensus

Probab=84.76  E-value=0.45  Score=33.48  Aligned_cols=61  Identities=33%  Similarity=0.371  Sum_probs=42.9

Q ss_pred             hcCCCccEEecccccCCCCCCCC----CCCCCCEEEcCCC--cCCCccc--ccCCCCCCcEEEcCCCCCC
Q psy8464          38 SEFTNLKILSAINVGLTSLKGFP----ELPALTRLELSDN--RISGGLN--VLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        38 ~~~~~l~~l~l~~~~~~~l~~~~----~l~~L~~l~l~~n--~~~~~~~--~~~~~~~L~~l~l~~n~l~   99 (111)
                      .+++.+..+.+++|++..+..+.    ..+++..|+|++|  .+....+  .++. ..|+.+-+.+|.+.
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC  283 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence            56778888999999998876332    3478999999998  4443221  1333 34788888888875

>KOG2120|consensus

Probab=84.46  E-value=0.058  Score=35.30  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=25.9

Q ss_pred             CCccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCC
Q psy8464          18 IQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTS   55 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~   55 (111)
                      +.++.+|++...|+.  +-.....+..|+.+.+.++.+..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD  224 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD  224 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc
Confidence            347777777777776  55555666777777777777654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=83.89  E-value=0.71  Score=30.10  Aligned_cols=82  Identities=22%  Similarity=0.144  Sum_probs=44.0

Q ss_pred             CCccEEEcCCCCCCChh-----hhhhcCCCccEEecccccCCCC--C-----CCCCCCCCCEEEcCCCcCCCccc-----
Q psy8464          18 IQIKELNLDNCRSTNIA-----ALTSEFTNLKILSAINVGLTSL--K-----GFPELPALTRLELSDNRISGGLN-----   80 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~-----~~~~~~~~l~~l~l~~~~~~~l--~-----~~~~l~~L~~l~l~~n~~~~~~~-----   80 (111)
                      +.++.+.+..|++...+     ..+.....++.+.+..|++..=  .     ++..+.+|+.|++++|.++..-.     
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~  236 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD  236 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence            44555555555554411     1222224455555666655431  1     23455678888888887764211     


Q ss_pred             ccCCCCCCcEEEcCCCCCC
Q psy8464          81 VLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        81 ~~~~~~~L~~l~l~~n~l~   99 (111)
                      .+..++.|+.|.+..|.++
T Consensus       237 al~~W~~lrEL~lnDClls  255 (388)
T COG5238         237 ALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             Hhcccchhhhccccchhhc
Confidence            1235556677777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
2je0_A	149	Crystal Structure Of Pp32 Length = 149		3e-17
2jqd_A	169	Structure Of The Leucine-Rich Repeat Domain Of Lanp		3e-17
2ell_A	168	Solution Structure Of The Leucine Rich Repeat Of Hu		2e-16

>pdb|2JE0|A Chain A, Crystal Structure Of Pp32 Length = 149

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Query: 19  QIKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
            +KEL LDN RS    +  LT EF  L+ LS INVGLTS+   P+L  L +LELSDNR+S
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77
Query: 77  GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
           GGL VL +  P L +LNL GN+IKDL T+EPL
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109

>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Query: 19  QIKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
            +KEL LDNC+S    I  LT EF  L+ LS INVGLTS+   P+L  L +LELS+NRIS
Sbjct: 23  DVKELVLDNCKSIEGKIEGLTDEFEELEFLSTINVGLTSISNLPKLNKLKKLELSENRIS 82
Query: 77  GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
           G L VL +  P L +LNL GN+IKDL T+EPL
Sbjct: 83  GDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPL 114

>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family Member B Length = 168

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
Query: 20  IKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           ++EL LDNC+S +  I  LT+EF NL+ LS INVGL S+   P+LP L +LELS+NRI G
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG 85
Query: 78  GLNVLQSS-PKLAYLNLCGNRIKDLETLEPL 107
           GL++L    P L +LNL GN++KD+ TLEPL
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-20
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 78.2 bits (193), Expect = 6e-20
 Identities = 53/92 (57%), Positives = 62/92 (67%), Gaps = 3/92 (3%)

Query: 19  QIKELNLDNCRSTNIA--ALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
            +KEL LDN RS       LT EF  L+ LS INVGLTS+   P+L  L +LELSDNR+S
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77

Query: 77  GGLNVLQSS-PKLAYLNLCGNRIKDLETLEPL 107
           GGL VL    P L +LNL GN+IKDL T+EPL
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 77.9 bits (192), Expect = 1e-19
 Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 3/92 (3%)

Query: 19  QIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
            ++EL LDNC+S +  I  LT+EF NL+ LS INVGL S+   P+LP L +LELS+NRI 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIF 84

Query: 77  GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
           GGL++L +  P L +LNL GN++KD+ TLEPL
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 74.7 bits (184), Expect = 2e-18
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 18  IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           ++ +EL+L   +   I  L +       +   +  +  L GFP L  L  L +++NRI  
Sbjct: 19  VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR 78

Query: 78  GLNVLQSS-PKLAYLNLCGNRIKDLETLEPLFG 109
               L  + P L  L L  N + +L  L+PL  
Sbjct: 79  IGEGLDQALPDLTELILTNNSLVELGDLDPLAS 111

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            + +L L+  + T+I  L +   NL  L      +  L    +L  L  L L  N IS  
Sbjct: 66  NVTKLFLNGNKLTDIKPL-TNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS-D 123

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +N L   P+L  L L  N+I D+  L  L
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITVLSRL 152

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 7e-12
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           +  + NL     T+     +E  ++  + A N  + S++G   LP +T+L L+ N+++  
Sbjct: 22  ETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-D 79

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +  L +   L +L L  N+IKDL +L+ L
Sbjct: 80  IKPLTNLKNLGWLFLDENKIKDLSSLKDL 108

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           ++K L+L++   ++I  L      L+ L   N  +T +     L  L  L L DN+IS  
Sbjct: 110 KLKSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-D 167

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +  L    KL  L L  N I DL  L  L
Sbjct: 168 IVPLAGLTKLQNLYLSKNHISDLRALAGL 196

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 4e-09
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           Q++ L L N + T+I  L S  T L  LS  +  ++ +     L  L  L LS N IS  
Sbjct: 132 QLESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-D 189

Query: 79  LNVLQSSPKLAYLNLCGNRIKD 100
           L  L     L  L L      +
Sbjct: 190 LRALAGLKNLDVLELFSQECLN 211

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.9 bits (121), Expect = 6e-09
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 20  IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79
           + E    +     I      F      +     +T      EL ++ ++  +++ I   +
Sbjct: 1   MGETITVSTPIKQIFPD-DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SV 58

Query: 80  NVLQSSPKLAYLNLCGNRIKDLETLEPL 107
             +Q  P +  L L GN++ D++ L  L
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDIKPLTNL 86

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
            +  L+L + R   +    +    L++L A +  L ++ G   LP L  L L +NR+   
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 523

Query: 78  -GLNVLQSSPKLAYLNLCGNRIKDLETL 104
             +  L S P+L  LNL GN +   E +
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 1   MNSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGF 59
              +    E    +M    ++ L+L +   T +  L  +   +  L   +  L +L    
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHL-EQLLLVTHLDLSHNRLRALPPAL 482

Query: 60  PELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFG 109
             L  L  L+ SDN +   ++ + + P+L  L LC NR++    ++PL  
Sbjct: 483 AALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
              ++       T+     ++   +  LSA   G+T+++G   L  L  LEL DN+I+  
Sbjct: 20  NAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-D 77

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           L  L++  K+  L L GN +K++  +  L
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGL 106

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +  L L + + T++A L    T +  L      L ++     L ++  L+L+  +I+  
Sbjct: 64  NLIGLELKDNQITDLAPL-KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT-D 121

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +  L     L  L L  N+I ++  L  L
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGL 150

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            ++ L LD  + TNI+ L +  TNL+ LS  N  ++ L     L  LT L+  DN+IS  
Sbjct: 130 NLQVLYLDLNQITNISPL-AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS-D 187

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           ++ L S P L  ++L  N+I D+  L   
Sbjct: 188 ISPLASLPNLIEVHLKNNQISDVSPLANT 216

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            IK L+L + + T++  L +  +NL++L      +T++     L  L  L + + ++S  
Sbjct: 108 SIKTLDLTSTQITDVTPL-AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-D 165

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           L  L +  KL  L    N+I D+  L  L
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISPLASL 194

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            ++ L++ N + +++  L +  + L  L A +  ++ +     LP L  + L +N+IS  
Sbjct: 152 NLQYLSIGNAQVSDLTPL-ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS-D 209

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLE 105
           ++ L ++  L  + L    I +     
Sbjct: 210 VSPLANTSNLFIVTLTNQTITNQPVFY 236

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 9e-06
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 38  SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
               N   ++A    +T      +L  +T L      ++  +  +Q    L  L L  N+
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74

Query: 98  IKDLETLEPL 107
           I DL  L+ L
Sbjct: 75  ITDLAPLKNL 84

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            + +L L+  + T+I  L +   NL  L      +  L    +L  L  L L  N IS  
Sbjct: 69  NVTKLFLNGNKLTDIKPL-ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS-D 126

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +N L   P+L  L L  N+I D+  L  L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRL 155

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           +  + NL     T+     +E  ++  + A N  + S++G   LP +T+L L+ N+++  
Sbjct: 25  ETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-D 82

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +  L +   L +L L  N++KDL +L+ L
Sbjct: 83  IKPLANLKNLGWLFLDENKVKDLSSLKDL 111

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           ++K L+L++   ++I  L      L+ L   N  +T +     L  L  L L DN+IS  
Sbjct: 113 KLKSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-D 170

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +  L    KL  L L  N I DL  L  L
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLRALAGL 199

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 6e-06
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 38  SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
             F      +     +T      EL ++ ++  +++ I   +  +Q  P +  L L GN+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNK 79

Query: 98  IKDLETLEPL 107
           + D++ L  L
Sbjct: 80  LTDIKPLANL 89

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           ++  L+L++ + ++I  L +  T L+ L      ++ L+    L  L  LEL        
Sbjct: 157 KLDTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL-- 213

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
              +     L   N   N    L T E +
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 53.8 bits (129), Expect = 5e-10
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS-- 76
             + L+L   RS       +    L   S +   L  ++    +P L  L LS+NR+   
Sbjct: 128 SQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE--NIPELLSLNLSNNRLYRL 185

Query: 77  -GGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
               +++Q +P L  LNL GN +K    L+ +
Sbjct: 186 DDMSSIVQKAPNLKILNLSGNELKSERELDKI 217

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
              + NL     T++ +   E + ++  +  N  + SL G      L  L LS N+IS  
Sbjct: 20  NAVKQNLGKQSVTDLVSQ-KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-D 77

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           L+ L+   KL  L++  NR+K+L  +   
Sbjct: 78  LSPLKDLTKLEELSVNRNRLKNLNGIPSA 106

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 21  KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLN 80
           +EL+++  R  N+  +      L  L   N  L        L  L  L + +N++   + 
Sbjct: 88  EELSVNRNRLKNLNGI--PSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIV 144

Query: 81  VLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +L    KL  L+L GN I +   L  L
Sbjct: 145 MLGFLSKLEVLDLHGNEITNTGGLTRL 171

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +  L LDN    +  +L     NL+ILS  N  L S+     L  L  L+L  N I+  
Sbjct: 107 CLSRLFLDNNELRDTDSL-IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT-N 164

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLE 102
              L    K+ +++L G +  +  
Sbjct: 165 TGGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 18  IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
             +KEL+L + + ++++ L  + T L+ LS     L +L G      L+RL L +N +  
Sbjct: 63  TNLKELHLSHNQISDLSPL-KDLTKLEELSVNRNRLKNLNGI-PSACLSRLFLDNNELR- 119

Query: 78  GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
             + L     L  L++  N++K +  L  L
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVMLGFL 149

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 38  SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
               N    +     +T L    EL  +      ++ I   L  +Q    L  L+L  N+
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQ 74

Query: 98  IKDLETLEPL 107
           I DL  L+ L
Sbjct: 75  ISDLSPLKDL 84

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           ++  L +   + T+I+AL    TNL+ L      ++ +     L  +  L L  N     
Sbjct: 89  KLTNLYIGTNKITDISAL-QNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD 147

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           L+ L +   L YL +  +++KD+  +  L
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPIANL 176

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           +     L     T++     E  ++  L      + S++G   L  L  L L+ N+I+  
Sbjct: 23  EGIRAVLQKASVTDVVTQ-EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-D 80

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           ++ L +  KL  L +  N+I D+  L+ L
Sbjct: 81  ISPLSNLVKLTNLYIGTNKITDISALQNL 109

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 4e-09
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 18  IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
             +  L +   +  ++  + +  T+L  LS     +  +     L +L       N+I+ 
Sbjct: 155 TGLNYLTVTESKVKDVTPI-ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT- 212

Query: 78  GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
            +  + +  +L  L +  N+I DL  L  L
Sbjct: 213 DITPVANMTRLNSLKIGNNKITDLSPLANL 242

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +  L+L+  +  +I+ L +  T+L   +A    +T +     +  L  L++ +N+I+  
Sbjct: 178 DLYSLSLNYNQIEDISPL-ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT-D 235

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           L+ L +  +L +L +  N+I D+  ++ L
Sbjct: 236 LSPLANLSQLTWLEIGTNQISDINAVKDL 264

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
           Q+  L +   + ++I A+  + T LK+L+  +  ++ +     L  L  L L++N++   
Sbjct: 244 QLTWLEIGTNQISDINAV-KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNE 302

Query: 78  GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
            + V+     L  L L  N I D+  L  L
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRPLASL 332

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 7e-08
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            ++ LNL+  + T+I+ L S    L  L      +T +     L  L  L L+++ IS  
Sbjct: 67  NLEYLNLNGNQITDISPL-SNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS-D 124

Query: 79  LNVLQSSPKLAYLNLCGNR-IKDLETLEPL 107
           ++ L +  K+  LNL  N  + DL  L  +
Sbjct: 125 ISPLANLTKMYSLNLGANHNLSDLSPLSNM 154

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 8e-08
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           ++  LNL    + +  +  S  T L  L+     +  +     L  L  L L+ N+I   
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE-D 191

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           ++ L S   L Y     N+I D+  +  +
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITPVANM 220

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           ++  L + N + T+++ L +  + L  L      ++ +    +L  L  L +  N+IS  
Sbjct: 222 RLNSLKIGNNKITDLSPL-ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS-D 279

Query: 79  LNVLQSSPKLAYLNLCGNRIKDL 101
           ++VL +  +L  L L  N++ + 
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNE 302

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 21  KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLN 80
             L         I    ++             +T +    EL ++T+L ++  +++  + 
Sbjct: 3   ATLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SIQ 60

Query: 81  VLQSSPKLAYLNLCGNRIKDLETLEPL 107
            ++    L YLNL GN+I D+  L  L
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISPLSNL 87

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRIS 76
           ++K LN+ + + ++I+ L +  + L  L   N  L +   +    L  LT L LS N I+
Sbjct: 266 KLKMLNVGSNQISDISVL-NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 77  GGLNVLQSSPKLAYLNLCGNRIK 99
             +  L S  K+   +     IK
Sbjct: 325 D-IRPLASLSKMDSADFANQVIK 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           +  +  L     T+  +  ++   +  L A  +G+ S+ G   L  LT++  S+N+++  
Sbjct: 25  EKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-D 82

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +  L++  KL  + +  N+I D+  L  L
Sbjct: 83  ITPLKNLTKLVDILMNNNQIADITPLANL 111

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 9e-09
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           ++ EL L   + +NI+ L +  T L  L      L  +     L  LT L L  N IS  
Sbjct: 266 KLTELKLGANQISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS-D 323

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           ++ + S  KL  L    N++ D+ +L  L
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSDVSSLANL 352

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            ++ L++ + + ++I+ L ++ TNL+ L A N  ++ +     L  L  L L+ N++   
Sbjct: 178 TLERLDISSNKVSDISVL-AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-D 235

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +  L S   L  L+L  N+I +L  L  L
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPLSGL 264

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +  L L+  +  +I+ + S   NL  L+     ++ +     L  L RL   +N++S  
Sbjct: 288 ALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD- 345

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           ++ L +   + +L+   N+I DL  L  L
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTPLANL 374

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            + EL+L+  +  +I  L +  TNL  L   N  +++L     L  LT L+L  N+IS  
Sbjct: 222 NLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-N 279

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           ++ L     L  L L  N+++D+  +  L
Sbjct: 280 ISPLAGLTALTNLELNENQLEDISPISNL 308

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            + ++N  N + T+I  L    T L  +   N  +  +     L  LT L L +N+I+  
Sbjct: 69  NLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT-D 126

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           ++ L++   L  L L  N I D+  L  L
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGL 155

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +++L+  N  +       +  T L+ L   +  ++ +    +L  L  L  ++N+IS  
Sbjct: 157 SLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS-D 213

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +  L     L  L+L GN++KD+ TL  L
Sbjct: 214 ITPLGILTNLDELSLNGNQLKDIGTLASL 242

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +  L L     ++I+ + S  T L+ L   N  ++ +     L  +  L    N+IS  
Sbjct: 310 NLTYLTLYFNNISDISPV-SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS-D 367

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLE 102
           L  L +  ++  L L      +  
Sbjct: 368 LTPLANLTRITQLGLNDQAWTNAP 391

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           ++ ++ ++N +  +I  L +  TNL  L+  N  +T +     L  L RLELS N IS  
Sbjct: 91  KLVDILMNNNQIADITPL-ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-D 148

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           ++ L     L  L+  GN++ DL+ L  L
Sbjct: 149 ISALSGLTSLQQLSF-GNQVTDLKPLANL 176

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 38  SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
           +              +T      +L  +T L+     I   ++ ++    L  +N   N+
Sbjct: 21  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQ 79

Query: 98  IKDLETLEPL 107
           + D+  L+ L
Sbjct: 80  LTDITPLKNL 89

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
            +  + L N   T++  +     N+K L+  N+  T+      L  L RL +    ++  
Sbjct: 45  SLTYITLANINVTDLTGI-EYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD 103

Query: 78  GLNVLQSSPKLAYLNLCGNRIKDLE 102
            +  L     L  L++  +   D  
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSI 128

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 5e-07
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILS-AINVGLTSLKGFPELPALTRLELSDNRIS 76
            +  L++ +    +      +    +  +  + N  +T +     LP L  L +  + + 
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH 172

Query: 77  GGLNVLQSSPKLAYLNLCGNRIKDLE 102
                ++  PKL  L      I   +
Sbjct: 173 D-YRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS--LKGFPELPALTRLELSDNRIS 76
            IK+L ++N  +TN   + S  +NL+ L  +   +TS  +     L +LT L++S +   
Sbjct: 67  NIKDLTINNIHATNYNPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 77  G-GLNVLQSSPKLAYLNLCGN-RIKDLETLEPL 107
              L  + + PK+  ++L  N  I D+  L+ L
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTL 158

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 21  KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79
           K         ++ A +T ++  +L  ++  N+ +T L G      +  L +++   +   
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NY 81

Query: 80  NVLQSSPKLAYLNLCGNRIKDLE 102
           N +     L  L + G  +   +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDK 104

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLT--SLKGFPELPALTRLELSDNRI 75
            ++ L +     T+      S  T+L +L   +       L     LP +  ++LS N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 76  SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
              +  L++ P+L  LN+  + + D   +E  
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 19/86 (22%), Positives = 30/86 (34%)

Query: 22  ELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV 81
           EL+        + A  S     K L+     +  +     +  L  L L  N I    N+
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL 88

Query: 82  LQSSPKLAYLNLCGNRIKDLETLEPL 107
              +  L  L +  N+I  L  +E L
Sbjct: 89  DAVADTLEELWISYNQIASLSGIEKL 114

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS-- 76
            ++ L+L       I  L +    L+ L      + SL G  +L  L  L +S+N+I+  
Sbjct: 71  NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130

Query: 77  GGLNVLQSSPKLAYLNLCGNRIKDLETLE 105
           G ++ L +  KL  L L GN + +     
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 9e-07
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 21  KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPEL-PALTRLELSDNRISGGL 79
           K L L       I++L S   NL+ILS     +  ++    +   L  L +S N+I+  L
Sbjct: 51  KHLALSTNNIEKISSL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-L 108

Query: 80  NVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           + ++    L  L +  N+I +   ++ L
Sbjct: 109 SGIEKLVNLRVLYMSNNKITNWGEIDKL 136

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 62  LPALTRLELSDNRIS--GGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
           L A   L LS N I     L+ +     L  L+L  N IK +E L+ +  +
Sbjct: 47  LKACKHLALSTNNIEKISSLSGM---ENLRILSLGRNLIKKIENLDAVADT 94

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 21  KELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79
             L+L          A    +T L  L+     LT L+    LP L  L+LS N++    
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93

Query: 80  NVLQSSPKLAYLNLCGNRIKDLE 102
            + Q+ P L  L++  NR+  L 
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLP 116

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRIS 76
            +  L+L + +  ++  L      L +L      LTSL       L  L  L L  N + 
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 77  G-GLNVLQSSPKLAYLNLCGNRIKDL 101
                +L  +PKL  L+L  N + +L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTEL 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
           ++  L L       +A    S    LK L  I  G++S+          L  L L  N I
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 76  SG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
           S   L     + KL  L+   N I  L 
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLS 169

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
            ++EL+L     + + +     + LK L        +L        P+LT L +  N   
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 77  GGL--NVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
             L    L++   L  L+L  + I+  +       +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-----LPALTRLELSDN 73
           Q++ L+L   R     A  S F NL +L  +N+  + L    E     LPAL  L L  N
Sbjct: 401 QLELLDLAFTRLKVKDAQ-SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 74  RISGG----LNVLQSSPKLAYLNLCGNRIKDL 101
               G     N LQ+  +L  L L    +  +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSL--KGFPELPALTRLELSDN 73
            ++EL+L +           +  NL  L ++N+      SL  + F E P L  L+L+  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 74  RISG--GLNVLQSSPKLAYLNLCGNRIKDL 101
           R+      +  Q+   L  LNL  + +   
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
            +K LNL   +   IA        NL++L+     L  L    F  LP +  ++L  N I
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 76  SG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +       +   KL  L+L  N +  +  +  +
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 9e-06
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 16  GKIQIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSD 72
           G   ++ LNL       + +        +  +      +  ++   F  L  L  L+L D
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 73  NRISGGLNVLQSSPKLAYLNLCGNRIKDLETL 104
           N ++     +   P +  + L GN++  L  +
Sbjct: 372 NALT----TIHFIPSIPDIFLSGNKLVTLPKI 399

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 2/86 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            I ++ L   +   +  +      + +       L  L     +P L  L L+ NR S  
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 79  LN--VLQSSPKLAYLNLCGNRIKDLE 102
                   +P L  L L  N ++   
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAW 467

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 20  IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG------FPELPALTRLELSDN 73
            + L L       + A  S F  L+ L  + +G            F  LP L  L+L  +
Sbjct: 26  TERLLLSFNYIRTVTA--SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 74  RISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
           +I     +  Q    L  L L    + D    +  F +
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL----KGFPELPALTRLELSDN 73
            ++ L+L + +   +         +L  L     GL+        F  L ALTRL+LS N
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 74  RIS--GGLNVLQSSPKLAYLNLCGNRIKDL--ETLEPL 107
           +I              L  ++   N+I  +    LEPL
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 18  IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           I ++EL+  +     +         L IL   +  LT        P L  ++LS N +  
Sbjct: 205 IAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 262

Query: 78  -GLNVLQSSPKLAYLNLCGNRIKDLE 102
              +      +L  L +  NR+  L 
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLVALN 288

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
           ++  L L +   T+ A L + +  L  +      L  +    F ++  L RL +S+NR+ 
Sbjct: 227 ELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

Query: 77  GGLNVLQSSPKLAYLNLCGNRIKDLE 102
                 Q  P L  L+L  N +  +E
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLHVE 311

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
           Q++ LNL++ +   I     +    ++ L      +  L    F  +P LT L L  N +
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 76  SG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
           S     +  ++PKL  L++  N ++ +E
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIE 157

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 9/90 (10%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
            ++ L L + R T++     + + +  L   NV    L       A+  L+ S N I+  
Sbjct: 166 SLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220

Query: 78  GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
              V      L  L L  N + D   L   
Sbjct: 221 RGPVNVE---LTILKLQHNNLTDTAWLLNY 247

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 19  QIKELNLDNC-RSTNIAALTSEFTNLKILSAINVG---LTSLKGFPELPALTRLELSDNR 74
            +  L+L    +   I+     F  L  L  +N+G   +  +     L  L  LE+S N 
Sbjct: 172 SLMRLDLGELKKLEYISEGA--FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229

Query: 75  ISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
                         L  L +  +++  +E
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
            +K LNL  C   ++  LT     L+ L         ++   F  L +L +L + ++++S
Sbjct: 197 NLKYLNLGMCNIKDMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 77  G-GLNVLQSSPKLAYLNLCGNRIKDL--ETLEPL 107
               N       L  LNL  N +  L  +   PL
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 21  KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSD-NRIS 76
             L L +   T I +      + L+ L   N  + S+    F  +P+L RL+L +  ++ 
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 77  G-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
                  +    L YLNL    IKD+  L PL
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL 217

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 27  NCRSTNIAALTSE-FTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVL 82
            C    ++ +     +N + L+ +   +  ++   F  L  L  L+L  N I    +   
Sbjct: 60  VCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119

Query: 83  QSSPKLAYLNLCGNRIKDLE 102
                L  L L  N +  + 
Sbjct: 120 NGLASLNTLELFDNWLTVIP 139

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINV---GLTSL-KGFPELPALTRLELSDNR 74
            ++ L+L     +     +        L  +++   G+ ++   F  L  L  L+   + 
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 75  ISG--GLNVLQSSPKLAYLNLCGNRIKDLE 102
           +      +V  S   L YL++     +   
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 9e-05
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL---KGFPELPALTRLELSDNRI 75
            +K L+L       +++       L+ L   +  L  +     F  L  L  L++S    
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 76  SG-GLNVLQSSPKLAYLNLCGNRIKD 100
                 +      L  L + GN  ++
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQE 459

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
            +  L L      ++A    S  ++L+ L A+   L SL+      L  L  L ++ N I
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 76  S--GGLNVLQSSPKLAYLNLCGNRIKDLE 102
                     +   L +L+L  N+I+ + 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 7e-06
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 18  IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           I ++EL+  +     +         L IL   +  LT        P L  ++LS N +  
Sbjct: 211 IAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 268

Query: 78  -GLNVLQSSPKLAYLNLCGNRIKDLE 102
              +      +L  L +  NR+  L 
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLVALN 294

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRIS 76
           ++  L L +   T+ A L + +  L  +      L  +    F ++  L RL +S+NR+ 
Sbjct: 233 ELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 77  GGLNVLQSSPKLAYLNLCGNRIKDLE 102
                 Q  P L  L+L  N +  +E
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVE 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +KEL +   R   + +L    + LK L      LTSL        L  L +  N+++  
Sbjct: 222 GLKELIVSGNR---LTSLPVLPSELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQLTRL 276

Query: 79  LNVLQSSPKLAYLNLCGNRIKDL 101
              L        +NL GN + + 
Sbjct: 277 PESLIHLSSETTVNLEGNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           +++ L +   +   + +L      L  LS  +  LT L   P    L +L +  N+++  
Sbjct: 82  ELRTLEVSGNQ---LTSLPVLPPGLLELSIFSNPLTHLPALPS--GLCKLWIFGNQLT-- 134

Query: 79  LNVLQSSPKLAYLNLCGNRIKDL 101
            ++    P L  L++  N++  L
Sbjct: 135 -SLPVLPPGLQELSVSDNQLASL 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
               LN+     T +        ++  L   +  LTSL      P L  LE+S N+++  
Sbjct: 41  GNAVLNVGESGLTTLPD--CLPAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSL 96

Query: 79  LNVLQSSPKLAYLNLCGNRIKDL 101
             +     +L+  +     +  L
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPAL 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
           +++ L L   +   +         L+ L      +T ++   F  L  +  +EL  N + 
Sbjct: 101 KLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 77  GGL---NVLQSSPKLAYLNLCGNRIKDL 101
                    Q   KL+Y+ +    I  +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTI 186

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 21  KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG- 77
             + + +   T I        +L  L      +T +       L  L +L LS N IS  
Sbjct: 174 SYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 78  GLNVLQSSPKLAYLNLCGNRIKDLE 102
               L ++P L  L+L  N++  + 
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVP 256

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRIS 76
            + +L L     + +   + +   +L+ L   N  L  +  G  +   +  + L +N IS
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276

Query: 77  -------GGLNVLQSSPKLAYLNLCGNRIKDLE 102
                              + ++L  N ++  E
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSL-KGFPELPALTRLELSDNR 74
           Q+ +L+L +   +     +        L  +++    + ++   F  L  L  L+   + 
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112

Query: 75  IS--GGLNVLQSSPKLAYLNLCGNRIKDLE 102
           +      +V  S   L YL++     +   
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG---FPELPALTRLELSDNRI 75
            +K L+L       +++       L+ L   +  L  +     F  L  L  L++S    
Sbjct: 79  SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 76  SG-GLNVLQSSPKLAYLNLCGNRIKD 100
                 +      L  L + GN  ++
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQE 164

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 20  IKELNLDNCRSTNIAALT-SEFTNLKILS----AINVGLTSLKGFPELPALTRLELSDNR 74
              L L++ +  ++      + T L  LS     ++      +      +L  L+LS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 75  ISGGLNVLQSSPKLAYLNLCGNRIKDL 101
           +    +      +L +L+   + +K +
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQM 116

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 21  KELNLDNCRSTNIAALT-SEFTNLKILS-AINVGLTSLKG--FPELPALTRLELSDNRIS 76
             L++ +  +        +  ++L++L  A N    +     F EL  LT L+LS  ++ 
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 77  G-GLNVLQSSPKLAYLNLCGNRIKDLE 102
                   S   L  LN+  N    L+
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLD 215

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 19  QIKELNLDNC-RSTNIAALTSEFTNLKILSAINVG---LTSLKGFPELPALTRLELSDNR 74
            ++ L+L    R + I+     F  L  L  +N+    L  +     L  L  L+LS N 
Sbjct: 161 SLRRLDLGELKRLSYISEGA--FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218

Query: 75  ISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
           +S       Q    L  L +  ++I+ +E
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 21  KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSD-NRIS 76
             L L + R T I        + LK L   N  + S+    F  +P+L RL+L +  R+S
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 77  G-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
                  +    L YLNL    ++++  L PL
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPNLTPL 206

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
            ++ LNL  C    I  LT     L  L      L++++   F  L  L +L +  ++I 
Sbjct: 186 NLRYLNLAMCNLREIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 77  G-GLNVLQSSPKLAYLNLCGNRIKDL 101
               N   +   L  +NL  N +  L
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 27  NCRSTNIAALTSE-FTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVL 82
            C   N+  +     TN ++L+     +  +K   F  L  L  L+LS N I    +   
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108

Query: 83  QSSPKLAYLNLCGNRIKDLE 102
                L  L L  NR+  + 
Sbjct: 109 NGLANLNTLELFDNRLTTIP 128

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 27  NCRSTNIAALTS--EFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQS 84
           N +  ++    +  E  ++  + A N  + S++G   LP +  L L  N++   ++ L+ 
Sbjct: 25  NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DISALKE 83

Query: 85  SPKLAYLNLCGNRIKDLET 103
              L YL L GN+++ L  
Sbjct: 84  LTNLTYLILTGNQLQSLPN 102

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 27  NCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISGGL--NVL 82
            C +  +  +     ++  +      +  L    F  L  L  L++        +  N  
Sbjct: 16  ICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75

Query: 83  QSSPKLAYLNLCGNRIKDLE 102
           +    L  L L  N+   LE
Sbjct: 76  RGLSSLIILKLDYNQFLQLE 95

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 2   NSNLPFFEPDT-ERMGKIQIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKGF 59
             NL  FEP   E +  + I E  L      +   +      N+  +S   V +  L+  
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303

Query: 60  PELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           P+      L +   ++          P L  L L  N+         L
Sbjct: 304 PKHFKWQSLSIIRCQLKQ--FPTLDLPFLKSLTLTMNKGSISFKKVAL 349

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
            +  L L      + +  + S  T+L+ L A+   L SL+     +L  L +L ++ N I
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140

Query: 76  SGG--LNVLQSSPKLAYLNLCGNRIKDL--ETLEPLFGST 111
                     +   L +++L  N I+ +    L+ L  + 
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 13  ERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAIN---VGLTSLKGFPELPALTRLE 69
             +G   ++ L+L    +  ++A       L+ L   +     +T    F  L  L  L+
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 70  LSDNRISGGL-NVLQSSPKLAYLNLCGNRIKDL 101
           +S          +      L  L + GN  KD 
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 16/90 (17%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-----LPALTRLELSDN 73
           +++ L+  +     +    S F +L+ L  +++  T+ K   +     L +L  L+++ N
Sbjct: 400 ELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 74  RISGGL--NVLQSSPKLAYLNLCGNRIKDL 101
                   NV  ++  L +L+L   +++ +
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 19  QIKELNLDNCRSTNIAALTSEF----TNLKILSAINVGLTSLKGFPE----LPALTRLEL 70
            ++ L+L            S       +L+ L      L S++   E    L  LT L++
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 71  SDNRISGGLNVLQSSPKLAYLNLCGNRIKDL 101
           S N      +  Q   K+ +LNL    I+ +
Sbjct: 395 SRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 20  IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG-G 78
           ++ L++ N    N+ + +     L+ L      L +L      P L  +++S N++    
Sbjct: 433 LEVLDVSNN---NLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP 489

Query: 79  LNVLQSSPKLAYLNLCGNRI 98
             +      L  + L  N  
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           +++ LNL +     +         L++L   N  L S      LP L  L +S N++   
Sbjct: 411 KMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSF--SLFLPRLQELYISRNKLKT- 465

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLE 102
           L      P L  + +  N++K + 
Sbjct: 466 LPDASLFPVLLVMKISRNQLKSVP 489

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 2   NSNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLKG-- 58
           N +      +  ++  + I+ L++         + + S    +K ++  N  +  +    
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329

Query: 59  FPELPALTRLELSDNRIS----GGLNVLQSSPKLAYLNLCGNRIKDLETLEPLF 108
              L +L  L+LS+N +            + P L  L L  N ++ ++    + 
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 21  KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG 77
             L++ +C  T +  L       L+ L+     +++++G    EL  L  ++L   +++ 
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 78  -GLNVLQSSPKLAYLNLCGNRIKDLE 102
                 +    L  LN+ GN++  LE
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 19  QIKELNL-DNCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRI 75
           ++K L +        +        NL  LS  +  LT++       L  L  L LS N I
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 76  SG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
           S    ++L    +L  + L G ++  +E
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVE 288

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 27  NCRSTNIAALTSE-FTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG-GLNVL 82
            C      A+     T  ++L      + +L    F   P L  LEL++N +S       
Sbjct: 17  LCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76

Query: 83  QSSPKLAYLNLCGNRIKDLET 103
            +   L  L L  NR+K +  
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPL 97

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLKG--FPELPALTRLELSDN 73
            ++ L L + R   I      FT L  L+ +++    +  L    F +L  L  LE+ DN
Sbjct: 81  NLRTLGLRSNRLKLIPLGV--FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 74  RISG-GLNVLQSSPKLAYLNLCGNRIKDLET 103
            +             L  L L    +  + T
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 4   NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLKG-- 58
           NL     +        +  L L +     I++    F  +  L  +++    L +L    
Sbjct: 50  NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLSSNHLHTLDEFL 107

Query: 59  FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
           F +L AL  L L +N I     N  +   +L  L L  N+I    
Sbjct: 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
            ++ L+L +     +     S+   L++L   N  +  +    F ++  L +L LS N+I
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 76  S----GGLNVLQSSPKLAYLNLCGNRIKDL 101
           S      +      PKL  L+L  N++K L
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 20  IKELNLDNCRSTNIAALTSEF-----TNLKILSAINVGLTSL--KGFPELPALTRLELSD 72
              L+L +    N++ L +E+     TNL  L   +  L  +  + F  +P L  L+LS 
Sbjct: 41  TALLDLSH---NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 73  NRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
           N +      +      L  L L  N I  ++
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVD 128

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 11/88 (12%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPA-LTRLELSDNRIS- 76
            ++ +N DN +   +  L    T+L++LS  N  LT L   PELP  L  L++S N +  
Sbjct: 141 LLEYINADNNQ---LTMLPELPTSLEVLSVRNNQLTFL---PELPESLEALDVSTNLLES 194

Query: 77  ---GGLNVLQSSPKLAYLNLCGNRIKDL 101
                +    S     +     NRI  +
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHI 222

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPA-LTRLELSDNRISG 77
            ++ L+  + R   ++ L     +LK L   N  LT L   PELPA L  +   +N+++ 
Sbjct: 101 SLEYLDACDNR---LSTLPELPASLKHLDVDNNQLTML---PELPALLEYINADNNQLT- 153

Query: 78  GLNVLQSSPKLAYLNLCGNRIKDL 101
              + +    L  L++  N++  L
Sbjct: 154 --MLPELPTSLEVLSVRNNQLTFL 175

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 21  KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79
                          ++  +   L  L   N  +T + G  +L  LT+L  + N I+  L
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-TL 79

Query: 80  NVLQSSPKLAYLNLCGNRIKDL 101
           + L  +  L YL    N++ +L
Sbjct: 80  D-LSQNTNLTYLACDSNKLTNL 100

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRIS 76
           ++  L L + +   I   + S    L+ L   N  L+ +  G P+L  L  + L  N I+
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277

Query: 77  -------GGLNVLQSSPKLAYLNLCGNRIKDLE 102
                    +           ++L  N +   E
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 21  KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG- 77
             L +   + T I         L  L   +  + +++         L RL L  N+I   
Sbjct: 175 NYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 78  GLNVLQSSPKLAYLNLCGNRIKDL 101
               L   P L  L+L  N++  +
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRV 256

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 2   NSNLPFFEPDTERMGKIQIKELNLDNCR-STNIAALTSEFTNLKILSAINVGLTSLKG-- 58
           ++ L F    +  +    ++ L+L     S               L  + +    + G  
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194

Query: 59  -FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRI 98
                  L  L++S N  S G+  L     L +L++ GN++
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-----LPALTRLELSDN 73
            ++ L L      N+ +  S F  L+ L+ +++   ++    +     L  L  L+L  N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 74  RIS---------GGLNVLQSSPKLAYLNLCGNRIKDL 101
            ++         G +  L+    L  LNL  N   ++
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKI--LSAINVGLTSLKG-----FPELPALTRLELS 71
            +K L+L N  ++        F +L    L  +N+    +       F  L  L  L+L 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 72  DNRISGGLN--VLQSSPKLAYLNLCGNRIKDLE 102
            N I   L     +    +  + L  N+   L 
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 15  MGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG------FPELPALTRL 68
           +    +  LNL   + + I   +  F+ L  L  +++GL  +        +  L  +  +
Sbjct: 378 LAHSPLHILNLTKNKISKI--ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 69  ELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
            LS N+      N     P L  L L    +K++++    F  
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 19  QIKELNLDNCR-STNIAALTSEFTNLKILSAINVGLTSLKGFPE-------LPALTRLEL 70
           ++  L L+N +   ++            +  +++  + L               LT L+L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 71  SDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
           S N ++  G +     P+L Y  L  N I+ L 
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            ++ L        ++  L     +LK L   N  L +L   P  P L  L +S+N++   
Sbjct: 92  HLESLVASCN---SLTELPELPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLE-K 145

Query: 79  LNVLQSSPKLAYLNLCGNRIKDL 101
           L  LQ+S  L  +++  N +K L
Sbjct: 146 LPELQNSSFLKIIDVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +  +  DN     +  L     +L+ + A N  L  L     LP LT +   +N +   
Sbjct: 196 FLTAIYADNNS---LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-- 250

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETL 104
             +    P L  LN+  N + DL  L
Sbjct: 251 -TLPDLPPSLEALNVRDNYLTDLPEL 275

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +K +++DN     +  L     +L+ ++A N  L  L     LP LT +   +N +   
Sbjct: 154 FLKIIDVDNNS---LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-- 208

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
             +      L  +    N +++L  L+ L
Sbjct: 209 -KLPDLPLSLESIVAGNNILEELPELQNL 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 19  QIKELNL-DNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNR 74
            +++L+L DN +  ++   T      L  L     GL  L    F  L AL  L L DN 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 75  ISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
           +     +  +    L +L L GNRI  + 
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVP 169

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLKG--FPELPALTRLELSDN 73
            ++ L L +     +   T  F +L  L+ + +    ++S+    F  L +L RL L  N
Sbjct: 130 ALQYLYLQDNALQALPDDT--FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 74  RISG-GLNVLQSSPKLAYLNLCGNRIKDL 101
           R++    +  +   +L  L L  N +  L
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG---FPELPALTRLELSDNR 74
            +++L        ++          LK L+  +  + S K    F  L  L  L+LS N+
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 75  IS----GGLNVLQSSPKLAY-LNLCGNRIKDLE 102
           I       L VL   P L   L+L  N +  ++
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 19  QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
           +++ L+L  C    I        ++L  L      + SL    F  L +L +L   +  +
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 76  SG-GLNVLQSSPKLAYLNLCGNRIKDLET 103
           +      +     L  LN+  N I+  + 
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKL 141

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLKGFPELPALTRLELSDNRI 75
           +I+   +         A ++    +  L  ++     +  L+ F     LT L+L  N+I
Sbjct: 549 KIQIFYMGYNNLEEFPA-SASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI 607

Query: 76  SG-GLNVLQSSPKLAYLNLCGNRIKDL 101
                +    + ++  L    N++K +
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYI 634

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
            I+ L+  N   + ++         K +   N  +T L+         +  L+L  N I 
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 77  G--GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
                 +  SS  L +LNL  N I D++     
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 19  QIKELNLDNCRSTNI--AALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
           +++ L+L       +  A L +    L+ L+     +  +KG      L  L+LS N+++
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 77  GGLNVLQSSPKLAYLNLCGNRIKDLE 102
                 QS+  + +++L  N++  +E
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIE 230

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 19  QIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
           + K   + +       A+L     N+K L      L+ +          L  L LS N +
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 76  SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
                 L+S   L  L+L  N +++L     +
Sbjct: 71  Y-ETLDLESLSTLRTLDLNNNYVQELLVGPSI 101

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 19  QIKELNLDNCR-STNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
            +  L L      +      S  ++L+ L A+   L SL+      L  L  L ++ N I
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 76  SGGL--NVLQSSPKLAYLNLCGNRIKDLE 102
                     +   L +L+L  N+I+ + 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG---FPELPALTRLELSDNRI 75
            +K L+L       +++       L+ L   +  L  +     F  L  L  L++S    
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 76  SGGLN-VLQSSPKLAYLNLCGNRIKDL 101
               N +      L  L + GN  ++ 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQEN 460

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
             + L L NC+       T +  +LK L+  +    +     +LP+L  L+LS N +S  
Sbjct: 305 GWQHLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 78  --GLNVLQSSPKLAYLNLCGNRIKDLE 102
                    +  L YL+L  N +  + 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMS 389

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 41  TNLKILS-AINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGN 96
            NL  L       L  L+      L  L  L +  + +     +    +P+L+ LNL  N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 97  RIKDLE 102
            ++ L 
Sbjct: 91  ALESLS 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 53  LTSLKGFPELPALTRLELSDNRISGGL--NVLQSSPKLAYLNLCGNRIKDLE 102
           L SL   P    LT L + + +    L    L+   +L  L +  + ++ + 
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 20  IKELNLDNCRSTNIAALT-SEFTNLKILS-AINVGLTSLKG--FPELPALTRLELSDNRI 75
            + L L       I +   S   N+  +  +I+V L  L+   F  L  +T +E+ + R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 76  SGGL--NVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
              +  + L+  P L +L +    +K    L  ++ + 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 19  QIKELNLDNCR--STNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
           +++ L+L      + N A L +    L+ L+     +  +KG      L  L+LS N+++
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 77  GGLNVLQSSPKLAYLNLCGNRIKDLE 102
                 QS+  + +++L  N++  +E
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIE 230

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 36.3 bits (84), Expect = 8e-04
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 20  IKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
           +K L+L N R T I+        NL+ L   + G+ +++   F  L +L  L+LS N +S
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 77  G-GLNVLQSSPKLAYLNLCGNRIKDL 101
               +  +    L +LNL GN  K L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTL 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.56
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.56
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.56
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.53
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.52
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.51
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.5
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.49
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.49
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.49
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.48
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.46
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.45
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.45
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.44
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.43
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.42
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.42
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.41
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.4
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.4
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.39
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.38
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.37
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.31
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.3
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.3
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.23
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.2
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.2
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.19
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.14
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.98
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.78
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.64
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.57
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.45
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.41
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.29
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.29
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.17
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.89
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.76
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.42
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.2
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.42
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.23
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	80.62

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.9e-15  Score=89.79  Aligned_cols=97  Identities=25%  Similarity=0.309  Sum_probs=83.4

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      ++.+.++|..++    +.++.|++++|.++.+|..+..+.+|+.+++++|.++.++  .|..+.+|+.|++++|.+..++
T Consensus        19 ~~~l~~ip~~~~----~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~   94 (193)
T 2wfh_A           19 NKGLKVLPKGIP----RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP   94 (193)
T ss_dssp             TSCCSSCCSCCC----TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCCCCcCCCCCC----CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence            456788886543    6799999999999998888899999999999999999887  5888999999999999998866


Q ss_pred             cc-cCCCCCCcEEEcCCCCCCCCc
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIKDLE  102 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~~~~  102 (111)
                      +. +..+++|+.|++++|.++.+.
T Consensus        95 ~~~f~~l~~L~~L~L~~N~l~~~~  118 (193)
T 2wfh_A           95 PRTFDGLKSLRLLSLHGNDISVVP  118 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             HHHhCCCCCCCEEECCCCCCCeeC
Confidence            54 778899999999999998764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.63  E-value=2.8e-15  Score=101.36  Aligned_cols=97  Identities=18%  Similarity=0.200  Sum_probs=76.9

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      +.+|.++|+.++    +.++.|++++|.|+.++ ..|..+++|+.|++++|.++.++  .|..+++|++|++++|+++.+
T Consensus        40 ~~~l~~vP~~lp----~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           40 ELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TSCCSSCCSSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCcCccCCCCC----cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence            457888887643    66888999999998855 46788888999999998888876  578888888888888888876


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCCc
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDLE  102 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~~  102 (111)
                      ++. +..+++|++|++++|.++++.
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~  140 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLE  140 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCST
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCC
Confidence            544 678888888888888887764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=9.9e-15  Score=88.24  Aligned_cols=85  Identities=21%  Similarity=0.250  Sum_probs=61.4

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.++. .+..+..+.+|+.+++++|.++.++  .|..+.+|+.|++++|.+..+.+. +..++.|+.|++
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  135 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL  135 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence            567777777777777 3666677777777777777777776  366777778888887777765433 667777888888


Q ss_pred             CCCCCCCCc
Q psy8464          94 CGNRIKDLE  102 (111)
Q Consensus        94 ~~n~l~~~~  102 (111)
                      ++|.++.+.
T Consensus       136 ~~N~l~~~~  144 (220)
T 2v9t_B          136 YDNKLQTIA  144 (220)
T ss_dssp             CSSCCSCCC
T ss_pred             CCCcCCEEC
Confidence            888777653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.62  E-value=8.9e-15  Score=85.66  Aligned_cols=96  Identities=23%  Similarity=0.235  Sum_probs=83.9

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      ++.+.++|..+.    +.++.|++++|.++.+ |..+..+.+|+.+++++|.++.++  .|..+.+|+.|++++|.+..+
T Consensus        21 ~n~l~~iP~~~~----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l   96 (174)
T 2r9u_A           21 NIRLASVPAGIP----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI   96 (174)
T ss_dssp             SSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCccCCCcC----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence            456888887653    7799999999999995 667899999999999999999988  368899999999999999987


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ++. +..+++|+++++++|.+...
T Consensus        97 ~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           97 PRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CHHHhccccCCCEEEeCCCCcccc
Confidence            665 78899999999999998754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=1.2e-14  Score=84.72  Aligned_cols=96  Identities=23%  Similarity=0.206  Sum_probs=83.5

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      ++.+.++|..+.    +.++.|++++|.++.+ +..+..+.+|+.+++++|.++.++  .|..+++|++|++++|.+..+
T Consensus        18 ~n~l~~ip~~~~----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~   93 (170)
T 3g39_A           18 GKSLASVPTGIP----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI   93 (170)
T ss_dssp             TSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCccCccCC----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe
Confidence            466888887653    7799999999999995 667899999999999999999988  478899999999999999987


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ++. +..+++|+.+++++|.+...
T Consensus        94 ~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           94 PRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CHHHhcCCCCCCEEEeCCCCCCCC
Confidence            665 77899999999999998643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=1.8e-14  Score=85.45  Aligned_cols=96  Identities=24%  Similarity=0.289  Sum_probs=71.3

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh--hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA--LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG   77 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~--~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~   77 (111)
                      ++.+.++|..++    ..+++|++++|.++.++.  .+..+.+|+.+++++|.++.+.  .+..+.+|+.|++++|.+..
T Consensus        17 ~~~l~~ip~~~~----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~   92 (192)
T 1w8a_A           17 GRGLKEIPRDIP----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             TSCCSSCCSCCC----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             CCCcCcCccCCC----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc
Confidence            356777776543    467888888888888554  3677888888888888888763  57778888888888888877


Q ss_pred             cccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          78 GLNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        78 ~~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +++. ++.++.|++|++++|.++++
T Consensus        93 ~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           93 ISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             cCHHHhcCCCCCCEEECCCCcCCee
Confidence            5544 66778888888888887754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.60  E-value=3.5e-14  Score=86.26  Aligned_cols=84  Identities=25%  Similarity=0.286  Sum_probs=43.7

Q ss_pred             CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcC
Q psy8464          18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLC   94 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~   94 (111)
                      +.++.|++++|.++.++. .+..+++|+.+++++|.++.++  .+..+.+|+.|++++|.+..++..+..+++|++|+++
T Consensus        64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALD  143 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECC
T ss_pred             cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECC
Confidence            445555555555554332 2344555555555555555544  2445555555555555555443344555556666666


Q ss_pred             CCCCCCC
Q psy8464          95 GNRIKDL  101 (111)
Q Consensus        95 ~n~l~~~  101 (111)
                      +|.++.+
T Consensus       144 ~N~l~~~  150 (229)
T 3e6j_A          144 QNQLKSI  150 (229)
T ss_dssp             SSCCCCC
T ss_pred             CCcCCcc
Confidence            6655544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=7.3e-14  Score=84.87  Aligned_cols=96  Identities=22%  Similarity=0.253  Sum_probs=78.3

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      ++.+..+|..+.    +.++.|++++|.++.+ +..+..+.+|+.+++++|.++.++  .+..+++|+.|++++|.+..+
T Consensus        28 ~~~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           28 SKRHASVPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             TSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCccCCCCC----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence            345777776543    7789999999999984 666788899999999999998887  467888999999999998876


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ++. +..+++|+.|++++|.++.+
T Consensus       104 ~~~~~~~l~~L~~L~Ls~N~l~~l  127 (229)
T 3e6j_A          104 PSAVFDRLVHLKELFMCCNKLTEL  127 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             ChhHhCcchhhCeEeccCCccccc
Confidence            554 66888999999999988876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.57  E-value=5.1e-14  Score=85.13  Aligned_cols=84  Identities=23%  Similarity=0.278  Sum_probs=52.0

Q ss_pred             CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.++.++. .+..+.+|+.+++++|.++.++  .+..+++|++|++++|.+..+.+. +..+++|+.|++
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence            556666666666666333 4566666666666666666655  355666666666666666654333 556666777777


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.++++
T Consensus       137 ~~N~l~~~  144 (220)
T 2v70_A          137 YDNQITTV  144 (220)
T ss_dssp             TTSCCCCB
T ss_pred             CCCcCCEE
Confidence            77766655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=4.8e-14  Score=83.74  Aligned_cols=97  Identities=20%  Similarity=0.201  Sum_probs=84.7

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      ++.+..+|+.+..+  +.++.|++++|.++.++ ..+..+.+|+.+++++|.++.++  .|..+++|+.|++++|.+..+
T Consensus        40 ~n~i~~ip~~~~~l--~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~  117 (193)
T 2wfh_A           40 GNQFTLVPKELSNY--KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV  117 (193)
T ss_dssp             SSCCCSCCGGGGGC--TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CCcCchhHHHhhcc--cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee
Confidence            46678888777666  89999999999999954 56799999999999999999987  588999999999999999986


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~  100 (111)
                      ++. +..++.|+.+++++|.+..
T Consensus       118 ~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          118 PEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ChhhhhcCccccEEEeCCCCeec
Confidence            654 7789999999999998864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.57  E-value=1.6e-13  Score=82.00  Aligned_cols=84  Identities=23%  Similarity=0.291  Sum_probs=52.0

Q ss_pred             CCccEEEcCCCCCCChhhh-hhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIAAL-TSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~-~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.++.++.. +..+.+|+.+++++|.++.++  .+..+++|++|++++|.+..+++. +..++.|+++++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  131 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL  131 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence            5666666666666664432 355666666666666666655  255666666666666666654443 456666777777


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.++++
T Consensus       132 ~~N~l~~~  139 (208)
T 2o6s_A          132 YQNQLKSV  139 (208)
T ss_dssp             CSSCCSCC
T ss_pred             CCCcccee
Confidence            76666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=2.7e-14  Score=96.70  Aligned_cols=98  Identities=28%  Similarity=0.463  Sum_probs=87.9

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCc--c
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG--L   79 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~--~   79 (111)
                      ++.+..+|. +..+  +.++.|++++|.++.+|..++.+++|+.|++++|.++.+|.+..+++|+.|++++|.+...  +
T Consensus       450 ~n~l~~lp~-~~~l--~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p  526 (567)
T 1dce_A          450 HKDLTVLCH-LEQL--LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI  526 (567)
T ss_dssp             TSCCSSCCC-GGGG--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT
T ss_pred             CCCCCCCcC-cccc--ccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCc
Confidence            457778876 7777  8999999999999999999999999999999999999998888899999999999999987  4


Q ss_pred             cccCCCCCCcEEEcCCCCCCCCc
Q psy8464          80 NVLQSSPKLAYLNLCGNRIKDLE  102 (111)
Q Consensus        80 ~~~~~~~~L~~l~l~~n~l~~~~  102 (111)
                      ..++.++.|+.|++++|.++++.
T Consensus       527 ~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          527 QPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             GGGGGCTTCCEEECTTSGGGGSS
T ss_pred             HHHhcCCCCCEEEecCCcCCCCc
Confidence            55889999999999999998764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=1.6e-13  Score=80.21  Aligned_cols=96  Identities=23%  Similarity=0.259  Sum_probs=68.5

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      +.+..+|..+.    +.++.|++++|.++.++. .+..+.+|+.+++++|.++.++  .+..+.+|+.|++++|.+...+
T Consensus        17 ~~l~~~p~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   92 (177)
T 2o6r_A           17 KGLTSVPTGIP----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP   92 (177)
T ss_dssp             SCCSSCCTTCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCccCCCCCC----CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC
Confidence            45666665432    567888888888877544 3467778888888888887766  3667778888888888877655


Q ss_pred             cc-cCCCCCCcEEEcCCCCCCCCc
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIKDLE  102 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~~~~  102 (111)
                      +. ++.++.|+++++++|.++++.
T Consensus        93 ~~~~~~l~~L~~L~l~~N~l~~~~  116 (177)
T 2o6r_A           93 NGVFDKLTQLKELALDTNQLKSVP  116 (177)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             HHHhhCCcccCEEECcCCcceEeC
Confidence            44 567778888888888777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.56  E-value=1.1e-13  Score=85.64  Aligned_cols=98  Identities=26%  Similarity=0.394  Sum_probs=64.6

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccccc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVL   82 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~   82 (111)
                      +.+..+| .+..+  +.++.|++++|.++.++. +..+++|+.+++++|.++.++.+.. .+|+.|++++|.+.. .+.+
T Consensus        51 n~i~~l~-~l~~l--~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~-~~~l  124 (263)
T 1xeu_A           51 SNIQSLA-GMQFF--TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRD-TDSL  124 (263)
T ss_dssp             SCCCCCT-TGGGC--TTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSB-SGGG
T ss_pred             CCcccch-HHhhC--CCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCC-Chhh
Confidence            4455665 45555  778888888888888666 6778888888888888777664433 666666666666665 3445


Q ss_pred             CCCCCCcEEEcCCCCCCCCcCCCC
Q psy8464          83 QSSPKLAYLNLCGNRIKDLETLEP  106 (111)
Q Consensus        83 ~~~~~L~~l~l~~n~l~~~~~~~~  106 (111)
                      +.++.|+.|++++|.+++++.+..
T Consensus       125 ~~l~~L~~L~Ls~N~i~~~~~l~~  148 (263)
T 1xeu_A          125 IHLKNLEILSIRNNKLKSIVMLGF  148 (263)
T ss_dssp             TTCTTCCEEECTTSCCCBCGGGGG
T ss_pred             cCcccccEEECCCCcCCCChHHcc
Confidence            566666666666666665544333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.56  E-value=6.8e-14  Score=84.58  Aligned_cols=96  Identities=23%  Similarity=0.263  Sum_probs=83.2

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      ++.+.++|..++    +.++.|++++|.++.++. .+..+.+|+.+++++|.++.+.  .|..+.+|++|++++|.+..+
T Consensus        20 ~~~l~~iP~~l~----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l   95 (220)
T 2v9t_B           20 GKGLTEIPTNLP----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL   95 (220)
T ss_dssp             TSCCSSCCSSCC----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCCcCcCCCccC----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence            456788887543    679999999999999554 6788999999999999999874  788999999999999999986


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ++. +..++.|+.|++++|.++.+
T Consensus        96 ~~~~f~~l~~L~~L~L~~N~l~~~  119 (220)
T 2v9t_B           96 PKSLFEGLFSLQLLLLNANKINCL  119 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CHhHccCCCCCCEEECCCCCCCEe
Confidence            655 67899999999999999876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.56  E-value=1.7e-13  Score=84.13  Aligned_cols=63  Identities=25%  Similarity=0.287  Sum_probs=26.2

Q ss_pred             cCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          39 EFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        39 ~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      .+++|+.+++++|.++.++  .+..+.+|+.|++++|.+..+++. ++.++.|++|++++|.++++
T Consensus       105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A          105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            3334444444444443333  133344444444444444433321 33444444444444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.55  E-value=2.2e-13  Score=83.62  Aligned_cols=98  Identities=24%  Similarity=0.289  Sum_probs=72.9

Q ss_pred             CCCCCCCCc-ccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           3 SNLPFFEPD-TERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         3 ~~l~~~p~~-~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      +.+..+++. +..+  +.+++|++++|.++. .+..+..+.+|+.+++++|.++.++  .+..+++|++|++++|.+..+
T Consensus        45 n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  122 (251)
T 3m19_A           45 TGLATLSDATFRGL--TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL  122 (251)
T ss_dssp             SCCCCCCTTTTTTC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCccCHhHhcCc--ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCc
Confidence            455556554 3334  788888888888888 4444677888888888888888776  467788888888888888875


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCCc
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDLE  102 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~~  102 (111)
                      ++. +..++.|+.|++++|.++++.
T Consensus       123 ~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A          123 PSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ChhHhccCCcccEEECcCCcCCccC
Confidence            554 567888888888888887764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=5.7e-14  Score=83.29  Aligned_cols=98  Identities=21%  Similarity=0.208  Sum_probs=83.9

Q ss_pred             CCCCCCCCCc--ccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCC
Q psy8464           2 NSNLPFFEPD--TERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRIS   76 (111)
Q Consensus         2 ~~~l~~~p~~--~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~   76 (111)
                      ++.+..+++.  +..+  +.++.|++++|.++. .|..+..+.+|+.+++++|.++.++  .+..+++|++|++++|.+.
T Consensus        38 ~n~i~~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           38 DNELGRISSDGLFGRL--PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             SCCCCSBCCSCSGGGC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             CCcCCccCCccccccC--CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            4567777764  4455  899999999999999 4778899999999999999999877  4888999999999999998


Q ss_pred             Ccccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          77 GGLNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        77 ~~~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ...+. +..++.|+++++++|.+..-
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          116 CVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             eeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            76544 77899999999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.54  E-value=1.1e-13  Score=83.64  Aligned_cols=96  Identities=21%  Similarity=0.263  Sum_probs=82.7

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChh--hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIA--ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG   77 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~--~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~   77 (111)
                      ++.+..+|..+.    ..++.|++++|.++.++  ..+..+++|+.+++++|.++.++  .+..+.+|+.|++++|.+..
T Consensus        20 ~n~l~~iP~~~~----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~   95 (220)
T 2v70_A           20 NQKLNKIPEHIP----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN   95 (220)
T ss_dssp             SSCCSSCCSCCC----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCcccCccCCC----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc
Confidence            467788887553    55789999999999963  34689999999999999999877  58899999999999999998


Q ss_pred             cccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          78 GLNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        78 ~~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +++. +..++.|++|++++|.++++
T Consensus        96 ~~~~~~~~l~~L~~L~Ls~N~l~~~  120 (220)
T 2v70_A           96 VQHKMFKGLESLKTLMLRSNRITCV  120 (220)
T ss_dssp             CCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred             cCHhHhcCCcCCCEEECCCCcCCeE
Confidence            6655 78999999999999999876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=2.5e-14  Score=99.17  Aligned_cols=95  Identities=19%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCccccc
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVL   82 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~   82 (111)
                      .+..+|+.++.+  +.|+.|++++|.++.+|..+..+.+|+.|++++|.++.+| .+..+.+|++|++++|.+..++..+
T Consensus       235 ~l~~l~~~~~~l--~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~  312 (727)
T 4b8c_D          235 QIFNISANIFKY--DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF  312 (727)
T ss_dssp             CCSCCCGGGGGC--CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSST
T ss_pred             CCCCCChhhcCC--CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhh
Confidence            444555555544  5666666666666666655566666666666666666555 4555566666666666665544445


Q ss_pred             CCCCCCcEEEcCCCCCCC
Q psy8464          83 QSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        83 ~~~~~L~~l~l~~n~l~~  100 (111)
                      +.++.|+.|++++|.+++
T Consensus       313 ~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          313 GNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TSCTTCCCEECTTSCCCS
T ss_pred             hcCCCccEEeCCCCccCC
Confidence            566666666666666553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.53  E-value=2.9e-13  Score=84.86  Aligned_cols=97  Identities=19%  Similarity=0.178  Sum_probs=58.3

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      +.+..+|..+..+  +.+++|++++|+++.++ ..+..+.+|+.+++++|.++.++  .+..+++|+.|++++|++..++
T Consensus        87 N~l~~l~~~~~~l--~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G           87 NQLQSLPLLGQTL--PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             SCCSSCCCCTTTC--TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             CcCCcCchhhccC--CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence            3444555544444  56666666666666643 34566666666666666666655  3555666666666666666544


Q ss_pred             cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +. +..++.|+.|++++|.++.+
T Consensus       165 ~~~~~~l~~L~~L~L~~N~l~~i  187 (290)
T 1p9a_G          165 AGLLNGLENLDTLLLQENSLYTI  187 (290)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCC
T ss_pred             HHHhcCcCCCCEEECCCCcCCcc
Confidence            43 34566666666666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.53  E-value=1.4e-13  Score=86.24  Aligned_cols=85  Identities=26%  Similarity=0.316  Sum_probs=68.2

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLC   94 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~   94 (111)
                      +.+++|++++|.++.+|..+..+++|+.+++++|.++.++  .|..+.+|+.|++++|.+..+++. +..+++|+.|+++
T Consensus        77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            6777888888888877777777888888888888888876  577888888888888888876554 5678888888988


Q ss_pred             CCCCCCCc
Q psy8464          95 GNRIKDLE  102 (111)
Q Consensus        95 ~n~l~~~~  102 (111)
                      +|.++.++
T Consensus       157 ~N~l~~l~  164 (290)
T 1p9a_G          157 NNNLTELP  164 (290)
T ss_dssp             TSCCSCCC
T ss_pred             CCcCCccC
Confidence            88888764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.52  E-value=4.9e-13  Score=82.95  Aligned_cols=96  Identities=26%  Similarity=0.339  Sum_probs=56.2

Q ss_pred             CCCCCCCcc-cccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           4 NLPFFEPDT-ERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         4 ~l~~~p~~~-~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      .+..+++.. ..+  +.+++|++++|.++.++. .+..+++|+.+++++|.++.++  .+..+++|+.|++++|.+...+
T Consensus        96 ~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           96 QLQSLPNGVFDKL--TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             CCCCCCTTTTTTC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccCccChhHhcCC--cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            444444433 222  566666666666666333 3456666666666666666655  2456666666666666666544


Q ss_pred             cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +. ++.+++|++|++++|.++++
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          174 EGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCC
T ss_pred             HHHhcCCccCCEEECCCCcCCcc
Confidence            33 45666666666666666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.52  E-value=4.9e-13  Score=79.89  Aligned_cols=96  Identities=25%  Similarity=0.244  Sum_probs=81.2

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      +.+.++|..+.    +.+++|++++|.++.++. .+..+.+|+.+++++|.++.++  .+..+.+|++|++++|.+..++
T Consensus        17 ~~l~~~p~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   92 (208)
T 2o6s_A           17 QGRTSVPTGIP----AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP   92 (208)
T ss_dssp             SCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCCCCCCC----CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence            45667775432    689999999999999655 4688999999999999999887  4788999999999999999866


Q ss_pred             cc-cCCCCCCcEEEcCCCCCCCCc
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIKDLE  102 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~~~~  102 (111)
                      +. ++.++.|+++++++|.++++.
T Consensus        93 ~~~~~~l~~L~~L~L~~N~l~~~~  116 (208)
T 2o6s_A           93 NGVFDKLTQLKELALNTNQLQSLP  116 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             HhHhcCccCCCEEEcCCCcCcccC
Confidence            55 678999999999999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.51  E-value=2e-13  Score=84.55  Aligned_cols=103  Identities=23%  Similarity=0.302  Sum_probs=81.3

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV   81 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~   81 (111)
                      ++.+..+|+ +..+  +.++.|++++|.++.++....  ..|+.+++++|.++.++.+..+++|+.|++++|.+..+ +.
T Consensus        72 ~N~i~~~~~-l~~l--~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~~  145 (263)
T 1xeu_A           72 HNQISDLSP-LKDL--TKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-VM  145 (263)
T ss_dssp             SSCCCCCGG-GTTC--SSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-GG
T ss_pred             CCccCCChh-hccC--CCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-hH
Confidence            345666766 5555  889999999999998776533  88999999999998887778888999999999998874 56


Q ss_pred             cCCCCCCcEEEcCCCCCCCCcCCCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIKDLETLEPLFGS  110 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~~~~~~~~l~~l  110 (111)
                      ++.++.|+.|++++|.++++..+..+++|
T Consensus       146 l~~l~~L~~L~L~~N~i~~~~~l~~l~~L  174 (263)
T 1xeu_A          146 LGFLSKLEVLDLHGNEITNTGGLTRLKKV  174 (263)
T ss_dssp             GGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred             HccCCCCCEEECCCCcCcchHHhccCCCC
Confidence            77888999999999988877555555444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.51  E-value=3.9e-13  Score=84.83  Aligned_cols=96  Identities=20%  Similarity=0.289  Sum_probs=61.2

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ   83 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~   83 (111)
                      .+..+| .+..+  +.++.|++++|.+..++. +..+++|+.+++++|.++.++.+..+++|+.|++++|.+..+ +.+.
T Consensus        52 ~i~~l~-~~~~l--~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~  126 (308)
T 1h6u_A           52 GVTTIE-GVQYL--NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-TPLA  126 (308)
T ss_dssp             CCCCCT-TGGGC--TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-GGGT
T ss_pred             CccCch-hhhcc--CCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc-hhhc
Confidence            445554 34444  677777777777777655 667777777777777777666566666677777776666652 3355


Q ss_pred             CCCCCcEEEcCCCCCCCCcCC
Q psy8464          84 SSPKLAYLNLCGNRIKDLETL  104 (111)
Q Consensus        84 ~~~~L~~l~l~~n~l~~~~~~  104 (111)
                      .++.|+.|++++|.++++..+
T Consensus       127 ~l~~L~~L~l~~n~l~~~~~l  147 (308)
T 1h6u_A          127 GLSNLQVLYLDLNQITNISPL  147 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGGG
T ss_pred             CCCCCCEEECCCCccCcCccc
Confidence            566666666666666554433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.8e-14  Score=82.04  Aligned_cols=93  Identities=26%  Similarity=0.266  Sum_probs=60.4

Q ss_pred             CCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCcc--ccc
Q psy8464           7 FFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGL--NVL   82 (111)
Q Consensus         7 ~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~--~~~   82 (111)
                      .+|+.+..+  +.++.|++++|.++.+ ..+..+++|+.+++++|.++. +| .+..+++|++|++++|.+...+  ..+
T Consensus        33 ~~~~~~~~l--~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~  109 (149)
T 2je0_A           33 KLEGLTDEF--EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL  109 (149)
T ss_dssp             BCCSCCTTC--TTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred             HHHHHHhhc--CCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHH
Confidence            455444444  6677777777777766 445666777777777777766 44 3334667777777777776632  346


Q ss_pred             CCCCCCcEEEcCCCCCCCCc
Q psy8464          83 QSSPKLAYLNLCGNRIKDLE  102 (111)
Q Consensus        83 ~~~~~L~~l~l~~n~l~~~~  102 (111)
                      +.++.|+++++++|.++++.
T Consensus       110 ~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A          110 KKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             GGCTTCCEEECTTCGGGGST
T ss_pred             hhCCCCCEEeCcCCcccchH
Confidence            66777777777777776554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=4.1e-14  Score=82.04  Aligned_cols=92  Identities=24%  Similarity=0.253  Sum_probs=50.4

Q ss_pred             CCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCcc--ccc
Q psy8464           7 FFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGL--NVL   82 (111)
Q Consensus         7 ~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~--~~~   82 (111)
                      .+|..+..+  +.++.|++++|.++.+ ..+..+++|+.+++++|.++. ++ .+..+++|++|++++|.+..++  +.+
T Consensus        40 ~i~~~~~~l--~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l  116 (168)
T 2ell_A           40 KIEGLTAEF--VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL  116 (168)
T ss_dssp             BCSSCCGGG--GGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGG
T ss_pred             hHHHHHHhC--CCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHH
Confidence            444443333  5566666666665555 444555566666666666555 33 2223556666666666665533  335


Q ss_pred             CCCCCCcEEEcCCCCCCCC
Q psy8464          83 QSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        83 ~~~~~L~~l~l~~n~l~~~  101 (111)
                      ..++.|+++++++|.++++
T Consensus       117 ~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A          117 KKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             SSCSCCCEEECCSSGGGTS
T ss_pred             hcCCCCCEEEeeCCcCcch
Confidence            5566666666666665554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.51  E-value=9e-14  Score=94.04  Aligned_cols=97  Identities=20%  Similarity=0.281  Sum_probs=76.1

Q ss_pred             CCCCCCCCccc-ccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           3 SNLPFFEPDTE-RMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         3 ~~l~~~p~~~~-~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      ++++.+|+..+ .+  +++++|++++|.|+.++ +.|..+.+|+.|++++|.++.++  .|.++.+|++|++++|.+..+
T Consensus        62 N~i~~l~~~~f~~l--~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l  139 (635)
T 4g8a_A           62 NPLRHLGSYSFFSF--PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL  139 (635)
T ss_dssp             SCCCEECTTTTTTC--TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS
T ss_pred             CCCCCCCHHHHhCC--CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC
Confidence            55667776433 34  78899999999998854 45688889999999999888877  478888899999998888876


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ++. ++.+++|++|++++|.++.+
T Consensus       140 ~~~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A          140 ENFPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             TTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             ChhhhhcCcccCeeccccCccccC
Confidence            544 77888888888888887654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.51  E-value=9e-13  Score=81.66  Aligned_cols=84  Identities=26%  Similarity=0.332  Sum_probs=39.3

Q ss_pred             CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.++.++ ..+..+++|+.+++++|.++.++  .+..+++|+.|++++|.+..+++. +..++.|+++++
T Consensus       109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  188 (270)
T 2o6q_A          109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL  188 (270)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence            34444444444444422 22344444444444444444444  244455555555555555443332 444555555555


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.++.+
T Consensus       189 ~~N~l~~~  196 (270)
T 2o6q_A          189 DNNQLKRV  196 (270)
T ss_dssp             CSSCCSCC
T ss_pred             CCCcCCcC
Confidence            55555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.50  E-value=9.4e-13  Score=81.57  Aligned_cols=84  Identities=23%  Similarity=0.242  Sum_probs=43.2

Q ss_pred             CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.+++|++++|.++.++. .+..+.+|+.+++++|.++.++  .+..+++|++|++++|.+..+++. ++.++.|+.|++
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence            444555555555544322 2344455555555555555444  244555555666665555553333 445566666666


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.++.+
T Consensus       165 ~~n~l~~~  172 (270)
T 2o6q_A          165 YNNQLKRV  172 (270)
T ss_dssp             CSSCCSCC
T ss_pred             cCCcCcEe
Confidence            66665544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=6.9e-13  Score=77.49  Aligned_cols=97  Identities=21%  Similarity=0.240  Sum_probs=81.9

Q ss_pred             CCCCCCCCCcc-cccCcCCccEEEcCCCCCCChhhh-hhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464           2 NSNLPFFEPDT-ERMGKIQIKELNLDNCRSTNIAAL-TSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG   77 (111)
Q Consensus         2 ~~~l~~~p~~~-~~~~~~~l~~l~l~~n~i~~~~~~-~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~   77 (111)
                      ++.+..+|+.. ..+  +.+++|++++|.++.++.. +..+.+|+.+++++|.++.++  .+..+++|+++++++|.+..
T Consensus        37 ~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  114 (177)
T 2o6r_A           37 SNKLQSLPHGVFDKL--TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS  114 (177)
T ss_dssp             SSCCCCCCTTTTTTC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcccEeCHHHhcCc--ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE
Confidence            35577777764 344  8999999999999996654 588999999999999999987  47889999999999999998


Q ss_pred             cccc-cCCCCCCcEEEcCCCCCCC
Q psy8464          78 GLNV-LQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        78 ~~~~-~~~~~~L~~l~l~~n~l~~  100 (111)
                      +++. +..++.|+++++++|.+..
T Consensus       115 ~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          115 VPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             eCHHHhcCCcccCEEEecCCCeec
Confidence            6655 5688999999999999875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.50  E-value=4.4e-13  Score=84.03  Aligned_cols=82  Identities=29%  Similarity=0.377  Sum_probs=47.0

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      +.++.|++++|.++.++. +..+++|+.+++++|.++.++.+..+++|+.|++++|.+.. .+.+..++.|+.|++++|.
T Consensus        68 ~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~  145 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK  145 (291)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC
T ss_pred             CCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCc
Confidence            566666666666666544 55666666666666666655555555555556655555554 2334445555555555555


Q ss_pred             CCCC
Q psy8464          98 IKDL  101 (111)
Q Consensus        98 l~~~  101 (111)
                      ++++
T Consensus       146 l~~~  149 (291)
T 1h6t_A          146 ITDI  149 (291)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            5444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.49  E-value=3.5e-13  Score=86.26  Aligned_cols=98  Identities=29%  Similarity=0.375  Sum_probs=77.4

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      +++++++|..+.    +.++.|++++|.++.++. .+..+++|+.+++++|.++.++  .+..+++|++|++++|.+..+
T Consensus        40 ~~~l~~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           40 SGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL  115 (353)
T ss_dssp             STTCSSCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred             CCCccccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence            456777876543    578899999999888555 6688888999999999888765  577888899999999888876


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCCcC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDLET  103 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~~~  103 (111)
                      ++. ++.+++|+++++++|.++.++.
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~l~~  141 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNPYKTLGE  141 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCCCSSSCS
T ss_pred             CHhHhCCCccCCEEECCCCCCcccCc
Confidence            555 7788888999998888877644

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.49  E-value=1.2e-12  Score=81.28  Aligned_cols=84  Identities=26%  Similarity=0.320  Sum_probs=50.2

Q ss_pred             CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.+++|++++|.++.++. .+..+++|+.+++++|.++.++  .+..+++|++|++++|.+...++. ++.++.|+.|++
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            556666666666666333 2355666666666666666555  255566666666666666654433 456666666666


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.++++
T Consensus       165 ~~n~l~~~  172 (272)
T 3rfs_A          165 SYNQLQSL  172 (272)
T ss_dssp             CSSCCCCC
T ss_pred             CCCCcCcc
Confidence            66666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.49  E-value=4.5e-13  Score=83.98  Aligned_cols=90  Identities=30%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      +.++.|++++|.++.++ .+..+++|+.+++++|.++.++.+..+++|+.|++++|.+....+ +..++.|+.|++++|.
T Consensus       112 ~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             TTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc
Confidence            34444444444444432 223444455555555554444444445555566666665555332 5555666666666666


Q ss_pred             CCCCcCCCCCCC
Q psy8464          98 IKDLETLEPLFG  109 (111)
Q Consensus        98 l~~~~~~~~l~~  109 (111)
                      +++++.+..+++
T Consensus       190 i~~l~~l~~l~~  201 (291)
T 1h6t_A          190 ISDLRALAGLKN  201 (291)
T ss_dssp             CCBCGGGTTCTT
T ss_pred             CCCChhhccCCC
Confidence            665544444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.48  E-value=7.2e-13  Score=78.68  Aligned_cols=95  Identities=27%  Similarity=0.384  Sum_probs=49.2

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC--CCCCCCCCCCCEEEcCCCcCCCc-cc
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS--LKGFPELPALTRLELSDNRISGG-LN   80 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~--l~~~~~l~~L~~l~l~~n~~~~~-~~   80 (111)
                      .+..+| .+..+  ++++.|++++|.++.++ .+..+++|+.+++++|.++.  ...+..+++|++|++++|.+... +.
T Consensus        55 ~i~~l~-~l~~l--~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  130 (197)
T 4ezg_A           55 NVTDLT-GIEYA--HNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT  130 (197)
T ss_dssp             CCSCCT-TGGGC--TTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH
T ss_pred             CccChH-HHhcC--CCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH
Confidence            344444 34444  55666666666555544 33455666666666666554  22455555555555555555532 22


Q ss_pred             ccCCCCCCcEEEcCCCC-CCCCc
Q psy8464          81 VLQSSPKLAYLNLCGNR-IKDLE  102 (111)
Q Consensus        81 ~~~~~~~L~~l~l~~n~-l~~~~  102 (111)
                      .++.++.|++|++++|. +..++
T Consensus       131 ~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A          131 KINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             HHTTCSSCCEEECCSCTBCCCCG
T ss_pred             HHhhCCCCCEEEccCCCCccccH
Confidence            24455555555555554 44443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.47  E-value=2.4e-13  Score=86.52  Aligned_cols=84  Identities=18%  Similarity=0.151  Sum_probs=36.0

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCC-CCC-CCC---------CCCCCCEEEcCCCcCCCcccccCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLT-SLK-GFP---------ELPALTRLELSDNRISGGLNVLQSSP   86 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~-~l~-~~~---------~l~~L~~l~l~~n~~~~~~~~~~~~~   86 (111)
                      +.+++|++++|.++.+|..+..+.+|+.+++++|... .+| .+.         .+++|++|++++|.+..++..++.++
T Consensus       127 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~  206 (328)
T 4fcg_A          127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ  206 (328)
T ss_dssp             TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCT
T ss_pred             CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCC
Confidence            4444444444444444444444444444444443221 122 111         13444444444444443333344445


Q ss_pred             CCcEEEcCCCCCCCC
Q psy8464          87 KLAYLNLCGNRIKDL  101 (111)
Q Consensus        87 ~L~~l~l~~n~l~~~  101 (111)
                      .|++|++++|.++++
T Consensus       207 ~L~~L~L~~N~l~~l  221 (328)
T 4fcg_A          207 NLKSLKIRNSPLSAL  221 (328)
T ss_dssp             TCCEEEEESSCCCCC
T ss_pred             CCCEEEccCCCCCcC
Confidence            555555555554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.46  E-value=4.4e-13  Score=86.23  Aligned_cols=84  Identities=25%  Similarity=0.251  Sum_probs=44.4

Q ss_pred             CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.++.++ ..+..+.+|+.|++++|.++.++  .|..+.+|+.|++++|.+..+.+ .+..++.|+.|++
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  143 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL  143 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence            44555555555555532 23455555555555555555544  34555555555555555554322 2455566666666


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.++.+
T Consensus       144 ~~N~l~~l  151 (361)
T 2xot_A          144 SQNQISRF  151 (361)
T ss_dssp             CSSCCCSC
T ss_pred             CCCcCCee
Confidence            66665554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=2.3e-13  Score=94.38  Aligned_cols=93  Identities=27%  Similarity=0.264  Sum_probs=82.4

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN   96 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n   96 (111)
                      ..++.|++++|.+..+|..+..+.+|+.|++++|.++.+| .+..+.+|++|++++|.+..++..++.++.|++|++++|
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N  303 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN  303 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS
T ss_pred             CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC
Confidence            7899999999999998888889999999999999999988 688899999999999999987666889999999999999


Q ss_pred             CCCCCc-CCCCCCCC
Q psy8464          97 RIKDLE-TLEPLFGS  110 (111)
Q Consensus        97 ~l~~~~-~~~~l~~l  110 (111)
                      .++.++ .+..+++|
T Consensus       304 ~l~~lp~~~~~l~~L  318 (727)
T 4b8c_D          304 MVTTLPWEFGNLCNL  318 (727)
T ss_dssp             CCCCCCSSTTSCTTC
T ss_pred             CCCccChhhhcCCCc
Confidence            998774 35555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.46  E-value=4.4e-13  Score=85.56  Aligned_cols=94  Identities=23%  Similarity=0.241  Sum_probs=80.7

Q ss_pred             CCCCCCCcccccCcCCccEEEcCC-CCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDN-CRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~-n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      +|..+|+ +...  ++++.|++++ |.++.++ ..+..+.+|+.|++++|.++.++  .|..+++|+.|++++|.+..++
T Consensus        20 ~l~~ip~-l~~~--~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           20 ALDSLHH-LPGA--ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             CCTTTTT-SCSC--SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             CCCccCC-CCCC--CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence            6889998 7766  8899999996 9999955 56799999999999999999876  5788999999999999999876


Q ss_pred             cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +. +..++ |+.|++.+|.+...
T Consensus        97 ~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           97 WKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             STTTCSCC-CCEEECCSSCCCCC
T ss_pred             HHHcccCC-ceEEEeeCCCccCC
Confidence            65 44444 99999999998754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.46  E-value=1.2e-12  Score=82.67  Aligned_cols=93  Identities=23%  Similarity=0.352  Sum_probs=48.0

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ   83 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~   83 (111)
                      .+..+++ +..+  +.++.|++++|.++.++ .+..+.+|+.+++++|.++.++.+..+++|+.|++++|.+... +.++
T Consensus        74 ~i~~~~~-~~~l--~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~  148 (308)
T 1h6u_A           74 QITDLAP-LKNL--TKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLA  148 (308)
T ss_dssp             CCCCCGG-GTTC--CSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGG
T ss_pred             cCCCChh-HccC--CCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcC-cccc
Confidence            3444444 3333  55666666666666554 2455556666666666655554444555555555555555442 2244


Q ss_pred             CCCCCcEEEcCCCCCCCC
Q psy8464          84 SSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        84 ~~~~L~~l~l~~n~l~~~  101 (111)
                      .++.|+.|++++|.++++
T Consensus       149 ~l~~L~~L~l~~n~l~~~  166 (308)
T 1h6u_A          149 GLTNLQYLSIGNAQVSDL  166 (308)
T ss_dssp             GCTTCCEEECCSSCCCCC
T ss_pred             CCCCccEEEccCCcCCCC
Confidence            444455555555444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.46  E-value=1.5e-12  Score=88.77  Aligned_cols=102  Identities=26%  Similarity=0.346  Sum_probs=73.0

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccccc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVL   82 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~   82 (111)
                      +.+..+| .+..+  +.|+.|++++|.+..++. +..+++|+.|++++|.+..++.+..+++|+.|++++|.+.. ++.+
T Consensus        53 n~i~~l~-~l~~l--~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~l  127 (605)
T 1m9s_A           53 SDIKSVQ-GIQYL--PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-INGL  127 (605)
T ss_dssp             CCCCCCT-TGGGC--TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-CGGG
T ss_pred             CCCCCCh-HHccC--CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-Cccc
Confidence            3455554 35555  788888888888888665 67888888888888888877777777788888888887776 4456


Q ss_pred             CCCCCCcEEEcCCCCCCCCcCCCCCCC
Q psy8464          83 QSSPKLAYLNLCGNRIKDLETLEPLFG  109 (111)
Q Consensus        83 ~~~~~L~~l~l~~n~l~~~~~~~~l~~  109 (111)
                      ..++.|+.|++++|.++++..+..+.+
T Consensus       128 ~~l~~L~~L~Ls~N~l~~l~~l~~l~~  154 (605)
T 1m9s_A          128 VHLPQLESLYLGNNKITDITVLSRLTK  154 (605)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGGSCTT
T ss_pred             cCCCccCEEECCCCccCCchhhcccCC
Confidence            667777777777777766544444333

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.3e-13  Score=80.56  Aligned_cols=82  Identities=23%  Similarity=0.274  Sum_probs=45.3

Q ss_pred             CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-C-CCCCCCCCEEEcCCCcCCCccc--ccCCCCCCcEEEcC
Q psy8464          19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-G-FPELPALTRLELSDNRISGGLN--VLQSSPKLAYLNLC   94 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~-~~~l~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~   94 (111)
                      .++.|++++|.++.+ ..+..+++|+.+++++|.++.++ . +..+++|++|++++|.+..+++  .++.++.|+.++++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence            556666666665555 33455555666666666655554 2 2445566666666666554333  34455566666666


Q ss_pred             CCCCCCC
Q psy8464          95 GNRIKDL  101 (111)
Q Consensus        95 ~n~l~~~  101 (111)
                      +|.+..+
T Consensus       122 ~N~i~~~  128 (176)
T 1a9n_A          122 RNPVTNK  128 (176)
T ss_dssp             SSGGGGS
T ss_pred             CCCCCCc
Confidence            6655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.45  E-value=1e-12  Score=86.61  Aligned_cols=95  Identities=22%  Similarity=0.193  Sum_probs=74.1

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      ..+.++|..++    +.++.|++++|.++. .+..+..+.+|+.+++++|.++.++  .+..+.+|++|++++|.+..++
T Consensus        64 ~~l~~iP~~~~----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  139 (452)
T 3zyi_A           64 RGLSEVPQGIP----SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP  139 (452)
T ss_dssp             SCCSSCCSCCC----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred             CCcCccCCCCC----CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC
Confidence            45677776543    678888999988888 4666788888888888888888765  5777888888888888888755


Q ss_pred             cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +. ++.+++|++|++++|.+..+
T Consensus       140 ~~~~~~l~~L~~L~L~~N~l~~~  162 (452)
T 3zyi_A          140 SGAFEYLSKLRELWLRNNPIESI  162 (452)
T ss_dssp             TTTSSSCTTCCEEECCSCCCCEE
T ss_pred             hhhhcccCCCCEEECCCCCccee
Confidence            54 66788888888888887755

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.45  E-value=1.6e-12  Score=80.68  Aligned_cols=94  Identities=16%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      .++.++|..++    +.+++|++++|.++.++. .+..+++|+.+++++|.++.++  .+..+++|++|++++|.+....
T Consensus        17 ~~l~~ip~~l~----~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (276)
T 2z62_A           17 LNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA   92 (276)
T ss_dssp             SCCSSCCSSSC----TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCccccCCCCC----CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence            34555655432    345666666666665333 4455566666666666555544  3455555555555555554433


Q ss_pred             cc-cCCCCCCcEEEcCCCCCCC
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~~  100 (111)
                      +. +..++.|+++++++|.+.+
T Consensus        93 ~~~~~~l~~L~~L~l~~n~l~~  114 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVETNLAS  114 (276)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCC
T ss_pred             hhhhcCCccccEEECCCCCccc
Confidence            22 4444455555555544443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.45  E-value=1.5e-12  Score=82.90  Aligned_cols=93  Identities=17%  Similarity=0.141  Sum_probs=55.2

Q ss_pred             CCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCccc-c
Q psy8464           5 LPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGLN-V   81 (111)
Q Consensus         5 l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~~-~   81 (111)
                      +..+|+.+..+  +.++.|++++|.++.+|..+..+++|+.+++++|.+.. +| .+..+++|+.|++++|.+....+ .
T Consensus       195 l~~lp~~l~~l--~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~  272 (328)
T 4fcg_A          195 IRSLPASIANL--QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD  272 (328)
T ss_dssp             CCCCCGGGGGC--TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred             cCcchHhhcCC--CCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence            44555554444  56666666666666655556666666666666655443 33 45566666667666665543333 3


Q ss_pred             cCCCCCCcEEEcCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~   99 (111)
                      ++.++.|+.|++++|.+.
T Consensus       273 ~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          273 IHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             GGGCTTCCEEECTTCTTC
T ss_pred             hhcCCCCCEEeCCCCCch
Confidence            556666777777766543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=2.8e-13  Score=77.08  Aligned_cols=86  Identities=56%  Similarity=0.854  Sum_probs=75.8

Q ss_pred             CcCCccEEEcCCCCCC--ChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEE
Q psy8464          16 GKIQIKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLN   92 (111)
Q Consensus        16 ~~~~l~~l~l~~n~i~--~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~   92 (111)
                      .++.++.+++++|.++  .+|..+..+++++.+++++|.++.++.+..+++|+.|++++|.+....+. ++.++.|++++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            3378999999999999  58888889999999999999999887788899999999999999874444 55789999999


Q ss_pred             cCCCCCCCC
Q psy8464          93 LCGNRIKDL  101 (111)
Q Consensus        93 l~~n~l~~~  101 (111)
                      +++|.++++
T Consensus        95 ls~N~i~~~  103 (149)
T 2je0_A           95 LSGNKIKDL  103 (149)
T ss_dssp             CTTSCCCSH
T ss_pred             CCCCcCCCh
Confidence            999999875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=2.7e-13  Score=78.60  Aligned_cols=87  Identities=52%  Similarity=0.866  Sum_probs=76.6

Q ss_pred             CcCCccEEEcCCCCCC--ChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEE
Q psy8464          16 GKIQIKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLN   92 (111)
Q Consensus        16 ~~~~l~~l~l~~n~i~--~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~   92 (111)
                      .++.++.|++++|.++  .+|..+..+++|+.+++++|.++.+..+..+++|+.|++++|.+...++. +..++.|++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            3378999999999999  58888889999999999999999887788899999999999999874444 55699999999


Q ss_pred             cCCCCCCCCc
Q psy8464          93 LCGNRIKDLE  102 (111)
Q Consensus        93 l~~n~l~~~~  102 (111)
                      +++|.+++++
T Consensus       102 Ls~N~l~~~~  111 (168)
T 2ell_A          102 LSGNKLKDIS  111 (168)
T ss_dssp             CBSSSCCSSG
T ss_pred             ccCCccCcch
Confidence            9999998864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=3.8e-13  Score=78.63  Aligned_cols=88  Identities=25%  Similarity=0.334  Sum_probs=75.7

Q ss_pred             CcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcC
Q psy8464          16 GKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLC   94 (111)
Q Consensus        16 ~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~   94 (111)
                      .+..++.|++++|.++.++......++|+.+++++|.++.++.+..+++|+.|++++|.+..+++. ++.++.|++++++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            347899999999999998665444459999999999999888888999999999999999986655 4789999999999


Q ss_pred             CCCCCCCcC
Q psy8464          95 GNRIKDLET  103 (111)
Q Consensus        95 ~n~l~~~~~  103 (111)
                      +|.+..++.
T Consensus        97 ~N~i~~~~~  105 (176)
T 1a9n_A           97 NNSLVELGD  105 (176)
T ss_dssp             SCCCCCGGG
T ss_pred             CCcCCcchh
Confidence            999987754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.44  E-value=1.8e-12  Score=87.84  Aligned_cols=93  Identities=17%  Similarity=0.189  Sum_probs=44.1

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      .++.++|..++    +.++.|++++|.++.+ +..+..+.+|+.+++++|.++.++  .|..+.+|++|++++|.+....
T Consensus        21 ~~l~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~   96 (606)
T 3vq2_A           21 QKLSKVPDDIP----SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS   96 (606)
T ss_dssp             SCCSSCCTTSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred             CCcccCCCCCC----CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC
Confidence            34556665432    3455555555555552 223445555555555555554432  3444455555555555544432


Q ss_pred             c-ccCCCCCCcEEEcCCCCCC
Q psy8464          80 N-VLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        80 ~-~~~~~~~L~~l~l~~n~l~   99 (111)
                      + .++.+++|++|++++|.+.
T Consensus        97 p~~~~~l~~L~~L~L~~n~l~  117 (606)
T 3vq2_A           97 PGSFSGLTSLENLVAVETKLA  117 (606)
T ss_dssp             TTSSTTCTTCCEEECTTSCCC
T ss_pred             hhhcCCcccCCEEEccCCccc
Confidence            2 2444444444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.43  E-value=6.1e-13  Score=79.02  Aligned_cols=97  Identities=20%  Similarity=0.235  Sum_probs=75.9

Q ss_pred             cccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCC-C-CCCCCCCCCEEEcCCCc-CCCcccccCCCC
Q psy8464          11 DTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSL-K-GFPELPALTRLELSDNR-ISGGLNVLQSSP   86 (111)
Q Consensus        11 ~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l-~-~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~   86 (111)
                      .+..+  +.+++|++++|.++. .+..+..+++|+.+++++|.++.. + .+..+++|++|++++|. +.. .+.+..++
T Consensus        83 ~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~  159 (197)
T 4ezg_A           83 PISGL--SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLP  159 (197)
T ss_dssp             GGTTC--TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCS
T ss_pred             hhhcC--CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCC
Confidence            44445  788999999999987 666778888999999999988862 2 57778889999999987 766 44677888


Q ss_pred             CCcEEEcCCCCCCCCcCCCCCCCC
Q psy8464          87 KLAYLNLCGNRIKDLETLEPLFGS  110 (111)
Q Consensus        87 ~L~~l~l~~n~l~~~~~~~~l~~l  110 (111)
                      +|+.+++++|.++++..+..+++|
T Consensus       160 ~L~~L~l~~n~i~~~~~l~~l~~L  183 (197)
T 4ezg_A          160 ELKSLNIQFDGVHDYRGIEDFPKL  183 (197)
T ss_dssp             SCCEEECTTBCCCCCTTGGGCSSC
T ss_pred             CCCEEECCCCCCcChHHhccCCCC
Confidence            899999999988877655555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.43  E-value=7e-13  Score=85.29  Aligned_cols=96  Identities=24%  Similarity=0.245  Sum_probs=64.6

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhh-hh-cCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAAL-TS-EFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG   77 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~-~~-~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~   77 (111)
                      +++++.+|..++    ..++.|++++|.++.++.. +. .+.+|+.|++++|.++.++  .|..+++|++|++++|.+..
T Consensus        27 ~~~l~~iP~~~~----~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~  102 (361)
T 2xot_A           27 KQQLPNVPQSLP----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT  102 (361)
T ss_dssp             SSCCSSCCSSCC----TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCcCccCccCC----CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence            345666665432    4467777777777774443 34 6777777777777777765  46677777777777777776


Q ss_pred             cccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          78 GLNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        78 ~~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +++. +..++.|+.|++++|.+..+
T Consensus       103 ~~~~~~~~l~~L~~L~L~~N~i~~~  127 (361)
T 2xot_A          103 LDEFLFSDLQALEVLLLYNNHIVVV  127 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCHHHhCCCcCCCEEECCCCcccEE
Confidence            5443 56777777777777777654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.43  E-value=1.4e-12  Score=87.39  Aligned_cols=96  Identities=25%  Similarity=0.319  Sum_probs=78.7

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      ++.++++|+.++    +.++.|++++|.++. .+..+..+++|+.+++++|.++.++  .+..+.+|++|++++|.+...
T Consensus        14 ~~~l~~ip~~~~----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           14 SRSFTSIPSGLT----AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             TSCCSSCCSCCC----TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred             CCccccccccCC----CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence            356788887643    678999999999988 4567788899999999999988765  588888999999999998876


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ++. ++.+++|++|++++|.++++
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~l~~~  113 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNPYQTL  113 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCCCSSS
T ss_pred             CHHHhccCCCCcEEECCCCccccc
Confidence            655 78888999999999988754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.43  E-value=2.2e-12  Score=87.99  Aligned_cols=91  Identities=30%  Similarity=0.341  Sum_probs=58.1

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      +.|+.|++++|.+..++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.+....+ +..++.|+.|++++|.
T Consensus       109 ~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          109 KKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence            556666666666666543 45666666666666666666555666677777777777766434 6667777777777777


Q ss_pred             CCCCcCCCCCCCC
Q psy8464          98 IKDLETLEPLFGS  110 (111)
Q Consensus        98 l~~~~~~~~l~~l  110 (111)
                      +++++.+..+++|
T Consensus       187 i~~l~~l~~l~~L  199 (605)
T 1m9s_A          187 ISDLRALAGLKNL  199 (605)
T ss_dssp             CCBCGGGTTCTTC
T ss_pred             CCCChHHccCCCC
Confidence            7666555444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=2.5e-12  Score=74.91  Aligned_cols=89  Identities=20%  Similarity=0.241  Sum_probs=75.3

Q ss_pred             ccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCC
Q psy8464          20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGN   96 (111)
Q Consensus        20 l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n   96 (111)
                      .+.+++++|.++.+|..+  ...++.+++++|.++.++  .+..+.+|++|++++|++..+++. +..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            568999999999988765  378999999999999985  588999999999999999987665 678999999999999


Q ss_pred             CCCCCcC--CCCCCCC
Q psy8464          97 RIKDLET--LEPLFGS  110 (111)
Q Consensus        97 ~l~~~~~--~~~l~~l  110 (111)
                      .++++..  +..+++|
T Consensus        89 ~l~~~~~~~~~~l~~L  104 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSL  104 (170)
T ss_dssp             CCCCCCTTTTTTCTTC
T ss_pred             ccCEeCHHHhcCCCCC
Confidence            9988743  4444444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.42  E-value=3.9e-12  Score=79.20  Aligned_cols=82  Identities=23%  Similarity=0.197  Sum_probs=34.7

Q ss_pred             CCccEEEcCCCCCCCh-hhhhhcCCCccEEeccccc-CCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEE
Q psy8464          18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVG-LTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLN   92 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~-~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~   92 (111)
                      +.+++|++++|.++.+ +..+..+++|+.+++++|. +..++  .+..+++|++|++++|.+....+. +..++.|++++
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            3444444444444442 3333444444444444443 33332  233444444444444444432221 33344444444


Q ss_pred             cCCCCCC
Q psy8464          93 LCGNRIK   99 (111)
Q Consensus        93 l~~n~l~   99 (111)
                      +++|.++
T Consensus       136 l~~n~l~  142 (285)
T 1ozn_A          136 LQDNALQ  142 (285)
T ss_dssp             CCSSCCC
T ss_pred             CCCCccc
Confidence            4444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.42  E-value=1.9e-12  Score=87.23  Aligned_cols=93  Identities=24%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      +++..+|..++    +.++.|++++|.++.++ ..+..+++|+.+++++|.++.++  .+..+++|++|++++|.+..++
T Consensus        41 ~~L~~ip~~~~----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp  116 (562)
T 3a79_B           41 RNLTHVPKDLP----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS  116 (562)
T ss_dssp             SCCCSCCTTSC----TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             CCCccCCCCCC----CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccC
Confidence            45666766432    56777777777777743 45677777777777777777653  4666777777777777776543


Q ss_pred             cccCCCCCCcEEEcCCCCCCCC
Q psy8464          80 NVLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        80 ~~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ..  .+++|++|++++|.++++
T Consensus       117 ~~--~l~~L~~L~Ls~N~l~~l  136 (562)
T 3a79_B          117 CC--PMASLRHLDLSFNDFDVL  136 (562)
T ss_dssp             SC--CCTTCSEEECCSSCCSBC
T ss_pred             cc--ccccCCEEECCCCCcccc
Confidence            33  566677777777766554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.42  E-value=1.7e-12  Score=85.29  Aligned_cols=95  Identities=26%  Similarity=0.267  Sum_probs=58.2

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      .++.++|..++    +.++.|++++|.++.+ +..+..+.+|+.+++++|.++.++  .|..+.+|++|++++|.+..++
T Consensus        53 ~~l~~iP~~~~----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~  128 (440)
T 3zyj_A           53 KNLREVPDGIS----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP  128 (440)
T ss_dssp             CCCSSCCSCCC----TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred             CCcCcCCCCCC----CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC
Confidence            45666776443    4566677777776663 345566666666666666666554  4556666666666666666544


Q ss_pred             cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +. +..+++|++|++++|.+..+
T Consensus       129 ~~~~~~l~~L~~L~L~~N~i~~~  151 (440)
T 3zyj_A          129 NGAFVYLSKLKELWLRNNPIESI  151 (440)
T ss_dssp             TTTSCSCSSCCEEECCSCCCCEE
T ss_pred             HhHhhccccCceeeCCCCccccc
Confidence            32 55666666666666665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.41  E-value=1.6e-12  Score=84.10  Aligned_cols=84  Identities=24%  Similarity=0.279  Sum_probs=43.3

Q ss_pred             CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.+++|++++|.++.++ ..+..+.+|+.+++++|.++.++  .+..+++|++|++++|.+..+++. ++.+++|++|++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            45555555555555532 24455555555555555555543  244555555555555555543333 344555555555


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.+.++
T Consensus       149 ~~n~l~~~  156 (390)
T 3o6n_A          149 SNNNLERI  156 (390)
T ss_dssp             CSSCCCBC
T ss_pred             CCCccCcc
Confidence            55555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=3.5e-12  Score=74.58  Aligned_cols=89  Identities=22%  Similarity=0.245  Sum_probs=75.0

Q ss_pred             ccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCC
Q psy8464          20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGN   96 (111)
Q Consensus        20 l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n   96 (111)
                      -+.++++++.+..+|..+.  ..++.+++++|.++.++  .+..+.+|+.|++++|++..+++. +..+++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3689999999999887653  78999999999999985  688999999999999999987665 578999999999999


Q ss_pred             CCCCCcC--CCCCCCC
Q psy8464          97 RIKDLET--LEPLFGS  110 (111)
Q Consensus        97 ~l~~~~~--~~~l~~l  110 (111)
                      .++.+..  +..+++|
T Consensus        92 ~l~~l~~~~~~~l~~L  107 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSL  107 (174)
T ss_dssp             CCCCCCTTTTTTCTTC
T ss_pred             ccceeCHHHhccccCC
Confidence            9988743  4444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.41  E-value=1.6e-12  Score=86.73  Aligned_cols=93  Identities=19%  Similarity=0.145  Sum_probs=62.4

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCC-C-CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSL-K-GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l-~-~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      ++++.++|+.++    +.++.|++++|.++. .+..+..+.+|+.+++++|.++.+ | .+..+++|++|++++|.+..+
T Consensus         9 ~n~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l   84 (520)
T 2z7x_B            9 KNGLIHVPKDLS----QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI   84 (520)
T ss_dssp             TSCCSSCCCSCC----TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE
T ss_pred             CCCccccccccc----ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec
Confidence            356667776543    567777777777777 345667777777777777777765 2 566677777777777777653


Q ss_pred             ccccCCCCCCcEEEcCCCCCCC
Q psy8464          79 LNVLQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        79 ~~~~~~~~~L~~l~l~~n~l~~  100 (111)
                      +..  .++.|++|++++|.+++
T Consensus        85 p~~--~l~~L~~L~L~~N~l~~  104 (520)
T 2z7x_B           85 SCH--PTVNLKHLDLSFNAFDA  104 (520)
T ss_dssp             ECC--CCCCCSEEECCSSCCSS
T ss_pred             Ccc--ccCCccEEeccCCcccc
Confidence            333  56677777777777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.40  E-value=5.1e-12  Score=78.69  Aligned_cols=83  Identities=29%  Similarity=0.361  Sum_probs=43.3

Q ss_pred             CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.+++|++++|.+..+ +..+..+++|+.+++++|.++.++  .+..+++|+.|++++|.+..+++. +..++.|+.+++
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence            4555555555555552 333445555555555555555544  244555555555555555543332 445555566666


Q ss_pred             CCCCCCC
Q psy8464          94 CGNRIKD  100 (111)
Q Consensus        94 ~~n~l~~  100 (111)
                      ++|.+++
T Consensus       185 ~~n~l~~  191 (285)
T 1ozn_A          185 HQNRVAH  191 (285)
T ss_dssp             CSSCCCE
T ss_pred             CCCcccc
Confidence            6555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.40  E-value=3.4e-12  Score=85.77  Aligned_cols=95  Identities=17%  Similarity=0.203  Sum_probs=51.2

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      .++.++|..+.    +.++.|++++|.++.+ +..+..+++|+.+++++|.++.++  .+..+++|++|++++|.+...+
T Consensus        17 ~~l~~ip~~l~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~   92 (570)
T 2z63_A           17 LNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA   92 (570)
T ss_dssp             SCCSSCCSSSC----SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCccccCCCcc----ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC
Confidence            35666665432    4466666666666663 334455666666666666655543  3555555666666655555433


Q ss_pred             c-ccCCCCCCcEEEcCCCCCCCC
Q psy8464          80 N-VLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        80 ~-~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      + .++.++.|++|++++|.++.+
T Consensus        93 ~~~~~~l~~L~~L~L~~n~l~~l  115 (570)
T 2z63_A           93 LGAFSGLSSLQKLVAVETNLASL  115 (570)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCS
T ss_pred             HhhhcCccccccccccccccccC
Confidence            2 244555555555555554443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.40  E-value=3.5e-12  Score=79.07  Aligned_cols=83  Identities=22%  Similarity=0.309  Sum_probs=49.7

Q ss_pred             CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l   93 (111)
                      +.+++|++++|.++.++ ..+..+.+|+.+++++|.++.++  .+..+.+|++|++++|.+....+ .++.++.|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            56677777777666633 34566666777777766666544  35556666666666666555333 2455556666666


Q ss_pred             CCCCCCC
Q psy8464          94 CGNRIKD  100 (111)
Q Consensus        94 ~~n~l~~  100 (111)
                      ++|.+++
T Consensus       132 ~~n~l~~  138 (276)
T 2z62_A          132 AHNLIQS  138 (276)
T ss_dssp             CSSCCCC
T ss_pred             cCCccce
Confidence            6665544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.40  E-value=3.2e-12  Score=86.60  Aligned_cols=94  Identities=17%  Similarity=0.088  Sum_probs=47.4

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      ..+.++|..++    ..++.|++++|.++.+ +..+..+.+|+.+++++|.++.+.  .|..+.+|++|++++|.+....
T Consensus        22 ~~l~~iP~~l~----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   97 (606)
T 3t6q_A           22 LGLNEIPGTLP----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA   97 (606)
T ss_dssp             SCCSSCCTTSC----TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC
T ss_pred             CCcccCcCCCC----CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccC
Confidence            34555665432    3455566666665553 444555555555555555555432  3455555555555555554432


Q ss_pred             c-ccCCCCCCcEEEcCCCCCCC
Q psy8464          80 N-VLQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        80 ~-~~~~~~~L~~l~l~~n~l~~  100 (111)
                      + .++.++.|++|++++|.+++
T Consensus        98 ~~~~~~l~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A           98 ETALSGPKALKHLFFIQTGISS  119 (606)
T ss_dssp             TTTTSSCTTCCEEECTTSCCSC
T ss_pred             hhhhcccccccEeeccccCccc
Confidence            2 24444455555555544443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.39  E-value=1e-11  Score=85.14  Aligned_cols=84  Identities=24%  Similarity=0.251  Sum_probs=59.6

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.++. .|..+..+.+|+.+++++|.++.++  .+..+.+|++|++++|.+..+++. ++.+++|++|++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            566777777777766 4555667777777777777777766  377777888888888877765433 667777888888


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.+++.
T Consensus       129 s~n~l~~~  136 (680)
T 1ziw_A          129 SHNGLSST  136 (680)
T ss_dssp             CSSCCSCC
T ss_pred             CCCccccc
Confidence            87777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.39  E-value=2.4e-12  Score=84.56  Aligned_cols=84  Identities=25%  Similarity=0.220  Sum_probs=50.2

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.+.. .+..+..+++|+.+++++|.++.++  .+..+++|+.|++++|.+....+ .+..++.|+++++
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  378 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL  378 (455)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence            556666666666666 3445556666666666666665543  35556666666666666655433 2556666666666


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.++++
T Consensus       379 ~~N~l~~~  386 (455)
T 3v47_A          379 DTNQLKSV  386 (455)
T ss_dssp             CSSCCSCC
T ss_pred             CCCccccC
Confidence            66666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.39  E-value=2.3e-12  Score=87.59  Aligned_cols=84  Identities=24%  Similarity=0.283  Sum_probs=42.4

Q ss_pred             CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.++.+ +..+..+.+|+.|++++|.++.++  .+..+++|++|++++|.+..+++. ++.++.|++|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            4555555555555552 224455555555555555555544  244555555555555555543333 344555555555


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.+.++
T Consensus       155 s~N~l~~~  162 (597)
T 3oja_B          155 SNNNLERI  162 (597)
T ss_dssp             CSSCCCBC
T ss_pred             eCCcCCCC
Confidence            55554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.39  E-value=4.8e-12  Score=83.39  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=40.2

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG   77 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~   77 (111)
                      +.++.|++++|.++. .+..+..+.+|+.+++++|.++.++  .+..+++|++|++++|.+..
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            667777777777777 3355566777777777777776665  35566667777776666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.39  E-value=4.7e-12  Score=83.77  Aligned_cols=93  Identities=18%  Similarity=0.196  Sum_probs=50.7

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      .++..+|..++    +.++.|++++|.++.+ +..+..+++|+.+++++|.++.+.  .+..+++|++|++++|.+..++
T Consensus        21 ~~l~~ip~~~~----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~   96 (477)
T 2id5_A           21 KRFVAVPEGIP----TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP   96 (477)
T ss_dssp             CCCSSCCSCCC----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             CCcCcCCCCCC----CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC
Confidence            45666665432    4456666666666663 344555666666666666555542  4555555555555555555433


Q ss_pred             cc-cCCCCCCcEEEcCCCCCC
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~   99 (111)
                      +. ++.++.|++|++++|.+.
T Consensus        97 ~~~~~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           97 LGVFTGLSNLTKLDISENKIV  117 (477)
T ss_dssp             TTSSTTCTTCCEEECTTSCCC
T ss_pred             cccccCCCCCCEEECCCCccc
Confidence            32 445555555555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.38  E-value=4.2e-12  Score=84.01  Aligned_cols=97  Identities=22%  Similarity=0.274  Sum_probs=73.8

Q ss_pred             CCCCCCCCc-ccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           3 SNLPFFEPD-TERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         3 ~~l~~~p~~-~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      +++..+++. +..+  +.+++|++++|.++. .|..+..+.+|+.+++++|.++.++  .+..+++|++|++++|.+...
T Consensus        42 n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~  119 (477)
T 2id5_A           42 NRIKTLNQDEFASF--PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL  119 (477)
T ss_dssp             SCCCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred             CccceECHhHccCC--CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC
Confidence            445555443 3334  789999999999988 4777788899999999999988877  467888888899888888765


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      .+. +..+++|+.|++++|.+..+
T Consensus       120 ~~~~~~~l~~L~~L~l~~n~l~~~  143 (477)
T 2id5_A          120 LDYMFQDLYNLKSLEVGDNDLVYI  143 (477)
T ss_dssp             CTTTTTTCTTCCEEEECCTTCCEE
T ss_pred             ChhHccccccCCEEECCCCcccee
Confidence            443 66777888888888777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.38  E-value=2.1e-12  Score=87.54  Aligned_cols=82  Identities=23%  Similarity=0.325  Sum_probs=76.0

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN   96 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n   96 (111)
                      ..++.|++++|.++.+|. ++.+.+|+.|++++|.++.+| .+..+++|+.|++++|.++.+ +.++.+++|+.|++++|
T Consensus       441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNN  518 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSS
T ss_pred             cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC-cccCCCCCCcEEECCCC
Confidence            468899999999999987 899999999999999999998 788999999999999999984 58889999999999999


Q ss_pred             CCCCC
Q psy8464          97 RIKDL  101 (111)
Q Consensus        97 ~l~~~  101 (111)
                      .++++
T Consensus       519 ~l~~~  523 (567)
T 1dce_A          519 RLQQS  523 (567)
T ss_dssp             CCCSS
T ss_pred             CCCCC
Confidence            99877

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.38  E-value=8.3e-12  Score=82.03  Aligned_cols=60  Identities=25%  Similarity=0.312  Sum_probs=39.2

Q ss_pred             CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464          18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG   77 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~   77 (111)
                      +.++.|++++|.++.+ +..+..+.+|+.|++++|.++.++  .+..+++|+.|++++|.+..
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence            6677777777777763 345566677777777777766655  35566666666666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.37  E-value=9.4e-12  Score=80.52  Aligned_cols=97  Identities=21%  Similarity=0.232  Sum_probs=78.7

Q ss_pred             CCCCCCCCc-ccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           3 SNLPFFEPD-TERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         3 ~~l~~~p~~-~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      +.+..+++. +..+  +.+++|++++|.+..+ +..+..+++|+.+++++|.++.++  .+..+++|++|++++|.+...
T Consensus        79 n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~  156 (390)
T 3o6n_A           79 LQIEEIDTYAFAYA--HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI  156 (390)
T ss_dssp             SCCCEECTTTTTTC--TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CcccccChhhccCC--CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence            345555543 3334  7899999999999995 555788999999999999999988  368899999999999999876


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      .+. ++.+++|+.|++++|.++.+
T Consensus       157 ~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          157 EDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             ChhhccCCCCCCEEECCCCcCCcc
Confidence            554 77889999999999998765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.37  E-value=6.2e-12  Score=85.21  Aligned_cols=97  Identities=22%  Similarity=0.195  Sum_probs=71.0

Q ss_pred             CCCCCCCC-cccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           3 SNLPFFEP-DTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         3 ~~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      +.+..+++ .+..+  +.+++|++++|.+.. .|..+..+.+|+.+++++|.++.++  .+..+.+|++|++++|.+..+
T Consensus        43 n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l  120 (606)
T 3t6q_A           43 NVLPTIQNTTFSRL--INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI  120 (606)
T ss_dssp             CCCSEECTTTSTTC--TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred             CccCcCChhHhccC--ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence            44555544 33444  788888888888888 5667788888888888888887753  577788888888888888764


Q ss_pred             c-cccCCCCCCcEEEcCCCCCCCC
Q psy8464          79 L-NVLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~-~~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      . ..++.++.|++|++++|.+.++
T Consensus       121 ~~~~~~~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A          121 DFIPLHNQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             GGSCCTTCTTCCEEECCSSCCCCC
T ss_pred             CcchhccCCcccEEECCCCccccc
Confidence            3 3366777888888888877664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.37  E-value=9.8e-13  Score=80.11  Aligned_cols=89  Identities=19%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             CCccEEEcCCCCCCChhh-hhhcCCCccEEeccccc-CCCCC--CCCCCCCCCEEEcCC-CcCCCcccc-cCCCCCCcEE
Q psy8464          18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVG-LTSLK--GFPELPALTRLELSD-NRISGGLNV-LQSSPKLAYL   91 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~-~~~l~--~~~~l~~L~~l~l~~-n~~~~~~~~-~~~~~~L~~l   91 (111)
                      +.++.|++++|.++.++. .+..+++|+.+++++|. ++.++  .|..+++|+.|++++ |.+..+++. +..+++|+++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            467777777777777444 45667777777777775 66655  456667777777776 676654432 5566677777


Q ss_pred             EcCCCCCCCCcCCCC
Q psy8464          92 NLCGNRIKDLETLEP  106 (111)
Q Consensus        92 ~l~~n~l~~~~~~~~  106 (111)
                      ++++|.+++++.+..
T Consensus       111 ~l~~n~l~~lp~~~~  125 (239)
T 2xwt_C          111 GIFNTGLKMFPDLTK  125 (239)
T ss_dssp             EEEEECCCSCCCCTT
T ss_pred             eCCCCCCcccccccc
Confidence            777776666544333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.37  E-value=1.8e-11  Score=77.98  Aligned_cols=88  Identities=25%  Similarity=0.304  Sum_probs=56.6

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ   83 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~   83 (111)
                      .+..+|. +..+  +.+++|++++|.++.++. +..+++|+.+++++|.++.++.+..+++|++|++++|.+... +.+.
T Consensus        55 ~i~~~~~-~~~~--~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~  129 (347)
T 4fmz_A           55 KVASIQG-IEYL--TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SPLA  129 (347)
T ss_dssp             CCCCCTT-GGGC--TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-GGGT
T ss_pred             ccccchh-hhhc--CCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-hhhc
Confidence            3444432 4444  677777777777777655 567777777777777777666666667777777777776653 2255


Q ss_pred             CCCCCcEEEcCCC
Q psy8464          84 SSPKLAYLNLCGN   96 (111)
Q Consensus        84 ~~~~L~~l~l~~n   96 (111)
                      .++.|+.+++++|
T Consensus       130 ~l~~L~~L~l~~n  142 (347)
T 4fmz_A          130 NLTKMYSLNLGAN  142 (347)
T ss_dssp             TCTTCCEEECTTC
T ss_pred             cCCceeEEECCCC
Confidence            5566666666665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.36  E-value=8.6e-12  Score=84.52  Aligned_cols=95  Identities=18%  Similarity=0.233  Sum_probs=62.2

Q ss_pred             CCCCCCC-cccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCC-C-CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           4 NLPFFEP-DTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSL-K-GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         4 ~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l-~-~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      .+..+++ .+..+  +.++.|++++|.++.+ |..+..+.+|+.+++++|.++.+ | .+..+.+|++|++++|.+...+
T Consensus        43 ~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  120 (606)
T 3vq2_A           43 PLKILKSYSFSNF--SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE  120 (606)
T ss_dssp             CCCEECTTTTTTC--TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred             CcCEeChhhccCC--ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence            3444444 23333  6777777777777773 55567777777777777777765 3 5667777777777777776544


Q ss_pred             c-ccCCCCCCcEEEcCCCCCCC
Q psy8464          80 N-VLQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        80 ~-~~~~~~~L~~l~l~~n~l~~  100 (111)
                      + .++.++.|++|++++|.+.+
T Consensus       121 ~~~~~~l~~L~~L~L~~n~l~~  142 (606)
T 3vq2_A          121 SFPIGQLITLKKLNVAHNFIHS  142 (606)
T ss_dssp             SSCCTTCTTCCEEECCSSCCCC
T ss_pred             ccccCCCCCCCEEeCCCCcccc
Confidence            2 36667777777777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.36  E-value=1e-11  Score=84.39  Aligned_cols=97  Identities=21%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             CCCCCCCC-cccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           3 SNLPFFEP-DTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         3 ~~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      +.+..+++ .+..+  +.++.|++++|.+..+ +..++.+++|+.|++++|.++.+|  .|..+++|++|++++|.+...
T Consensus        85 n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  162 (597)
T 3oja_B           85 LQIEEIDTYAFAYA--HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI  162 (597)
T ss_dssp             SCCCEECTTTTTTC--TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCCCChHHhcCC--CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence            34555555 33334  7899999999999995 445689999999999999999988  368899999999999999876


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ++. ++.++.|++|++++|.++++
T Consensus       163 ~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          163 EDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             ChhhhhcCCcCcEEECcCCCCCCc
Confidence            654 78899999999999998765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.36  E-value=7.4e-12  Score=79.40  Aligned_cols=84  Identities=23%  Similarity=0.281  Sum_probs=59.3

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcC
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLC   94 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~   94 (111)
                      +.++.|++++|.++. .+..+..+++|+.+++++|.++.++  .+..+++|+.|++++|.+..++..+..++.|++++++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence            567777777777777 3556677777777777777777654  4666677777777777777655556677777777777


Q ss_pred             CCCCCCC
Q psy8464          95 GNRIKDL  101 (111)
Q Consensus        95 ~n~l~~~  101 (111)
                      +|.++++
T Consensus       272 ~N~i~~~  278 (330)
T 1xku_A          272 NNNISAI  278 (330)
T ss_dssp             SSCCCCC
T ss_pred             CCcCCcc
Confidence            7777665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.35  E-value=5.7e-12  Score=80.25  Aligned_cols=90  Identities=22%  Similarity=0.297  Sum_probs=51.9

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGN   96 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n   96 (111)
                      +.++++++++|.++.++ .+..+++|+.+++++|.++.++.+..+++|+.|++++|.+....+. ++.++.|+.+++++|
T Consensus       243 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          243 SQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             TTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             CCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            45555555555555543 2345555666666666555555455556666666666666543322 556677777777777


Q ss_pred             CCCCCcCCCCCC
Q psy8464          97 RIKDLETLEPLF  108 (111)
Q Consensus        97 ~l~~~~~~~~l~  108 (111)
                      .++++..+..++
T Consensus       322 ~l~~~~~~~~l~  333 (347)
T 4fmz_A          322 HITDIRPLASLS  333 (347)
T ss_dssp             SCCCCGGGGGCT
T ss_pred             ccccccChhhhh
Confidence            776654443333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.35  E-value=4.3e-12  Score=84.59  Aligned_cols=98  Identities=18%  Similarity=0.181  Sum_probs=74.4

Q ss_pred             CCCCCCCC-cccccCcCCccEEEcCCCCCCC-hhhhhh-cCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEP-DTERMGKIQIKELNLDNCRSTN-IAALTS-EFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~-~~~~~~-~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      +.+..+++ .+..+  +.++.|++++|.++. .|..+. .++.|+.+++++|.++.++....+++|+.|++++|.+..++
T Consensus       130 N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          130 NKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             SCCCSGGGBCGGGG--SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC
T ss_pred             CCCCCCCchhhcCC--CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCC
Confidence            34444433 33334  788888888888888 555553 68888888888888887775556888999999999988866


Q ss_pred             cccCCCCCCcEEEcCCCCCCCCc
Q psy8464          80 NVLQSSPKLAYLNLCGNRIKDLE  102 (111)
Q Consensus        80 ~~~~~~~~L~~l~l~~n~l~~~~  102 (111)
                      +.++.++.|+.|++++|.+++++
T Consensus       208 ~~~~~l~~L~~L~Ls~N~l~~lp  230 (487)
T 3oja_A          208 PEFQSAAGVTWISLRNNKLVLIE  230 (487)
T ss_dssp             GGGGGGTTCSEEECTTSCCCEEC
T ss_pred             HhHcCCCCccEEEecCCcCcccc
Confidence            67778888999999999888763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.35  E-value=6.2e-12  Score=79.53  Aligned_cols=84  Identities=19%  Similarity=0.165  Sum_probs=66.9

Q ss_pred             CCccEEEcCCCCCCC-hhhhh-hcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCC
Q psy8464          18 IQIKELNLDNCRSTN-IAALT-SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCG   95 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~-~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~   95 (111)
                      +.++.|++++|.++. .+..+ ..++.|+.+++++|.++.++....+++|+.|++++|.+..+++.+..++.|+.+++++
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~  223 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN  223 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred             CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcC
Confidence            778888888888888 34444 4678888888888888877755567888999999998887666677888899999999


Q ss_pred             CCCCCC
Q psy8464          96 NRIKDL  101 (111)
Q Consensus        96 n~l~~~  101 (111)
                      |.++.+
T Consensus       224 N~l~~l  229 (317)
T 3o53_A          224 NKLVLI  229 (317)
T ss_dssp             SCCCEE
T ss_pred             Ccccch
Confidence            888765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.34  E-value=1.7e-11  Score=77.87  Aligned_cols=60  Identities=20%  Similarity=0.280  Sum_probs=28.5

Q ss_pred             CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464          18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG   77 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~   77 (111)
                      +.++.|++++|.+..+ +..+..+.+|+.+++++|.++.++  .+..+++|++|++++|.+..
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  116 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE  116 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc
Confidence            3455555555555552 233445555555555555554432  34444444444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.33  E-value=1.1e-11  Score=82.00  Aligned_cols=101  Identities=24%  Similarity=0.322  Sum_probs=75.3

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccccc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVL   82 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~   82 (111)
                      +.+..+|. +..+  +.+++|++++|.++.++. +..+.+|+.+++++|.+..++.+..+++|++|++++|.+... +.+
T Consensus        56 ~~i~~l~~-~~~l--~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~~~  130 (466)
T 1o6v_A           56 LGIKSIDG-VEYL--NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DPL  130 (466)
T ss_dssp             SCCCCCTT-GGGC--TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGG
T ss_pred             CCCccCcc-hhhh--cCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC-hHH
Confidence            34455553 4444  788888888888888666 778888888888888888776677788888888888888774 347


Q ss_pred             CCCCCCcEEEcCCCCCCCCcCCCCCC
Q psy8464          83 QSSPKLAYLNLCGNRIKDLETLEPLF  108 (111)
Q Consensus        83 ~~~~~L~~l~l~~n~l~~~~~~~~l~  108 (111)
                      +.++.|++|++++|.+.+++.+..++
T Consensus       131 ~~l~~L~~L~l~~n~l~~~~~~~~l~  156 (466)
T 1o6v_A          131 KNLTNLNRLELSSNTISDISALSGLT  156 (466)
T ss_dssp             TTCTTCSEEEEEEEEECCCGGGTTCT
T ss_pred             cCCCCCCEEECCCCccCCChhhccCC
Confidence            78888888888888877665444433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.33  E-value=3.3e-12  Score=88.95  Aligned_cols=83  Identities=18%  Similarity=0.261  Sum_probs=75.1

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.+++ +|..++.+..|+.+++++|.++. +| .+..++.|+.|++++|++...+| .++.++.|+++++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            789999999999998 99999999999999999999984 67 78889999999999999985444 4889999999999


Q ss_pred             CCCCCCC
Q psy8464          94 CGNRIKD  100 (111)
Q Consensus        94 ~~n~l~~  100 (111)
                      ++|.+++
T Consensus       712 s~N~l~g  718 (768)
T 3rgz_A          712 SNNNLSG  718 (768)
T ss_dssp             CSSEEEE
T ss_pred             cCCcccc
Confidence            9999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.33  E-value=1.2e-11  Score=83.37  Aligned_cols=96  Identities=16%  Similarity=0.201  Sum_probs=81.7

Q ss_pred             CCCCCCCCCc-ccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc
Q psy8464           2 NSNLPFFEPD-TERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         2 ~~~l~~~p~~-~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      ++.+..+++. +..+  +.+++|++++|.++.+ |+.+..+.+|+.+++++|.++.+|.. .+.+|++|++++|.+..+.
T Consensus        61 ~N~i~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~  137 (562)
T 3a79_B           61 QNSISELRMPDISFL--SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLP  137 (562)
T ss_dssp             SSCCCCCCGGGTTTC--TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCC
T ss_pred             CCCccccChhhhccC--CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccC
Confidence            4567777753 4445  8999999999999994 77789999999999999999998844 7899999999999998743


Q ss_pred             --cccCCCCCCcEEEcCCCCCCC
Q psy8464          80 --NVLQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        80 --~~~~~~~~L~~l~l~~n~l~~  100 (111)
                        ..++.+++|++|++++|.++.
T Consensus       138 ~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          138 VCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CCGGGGGCTTCCEEEEECSBCCT
T ss_pred             chHhhcccCcccEEecCCCcccc
Confidence              458899999999999999875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.33  E-value=4.3e-11  Score=79.24  Aligned_cols=90  Identities=24%  Similarity=0.348  Sum_probs=51.9

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ   83 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~   83 (111)
                      .+..+| ++..+  +.++.|++++|.++.++  ++.+++|+.+++++|.++.++ +..+++|++|++++|.+..+ + ++
T Consensus        53 ~l~~~~-~l~~l--~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l-~-~~  124 (457)
T 3bz5_A           53 SITDMT-GIEKL--TGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL-D-VS  124 (457)
T ss_dssp             CCCCCT-TGGGC--TTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC-C-CT
T ss_pred             CcccCh-hhccc--CCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee-c-CC
Confidence            344443 34444  56666666666666654  455566666666666666553 45556666666666666552 2 55


Q ss_pred             CCCCCcEEEcCCCCCCCC
Q psy8464          84 SSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        84 ~~~~L~~l~l~~n~l~~~  101 (111)
                      .+++|+++++++|.++++
T Consensus       125 ~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A          125 QNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             TCTTCCEEECTTSCCSCC
T ss_pred             CCCcCCEEECCCCcccee
Confidence            566666666666666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.32  E-value=1.3e-11  Score=84.60  Aligned_cols=105  Identities=21%  Similarity=0.221  Sum_probs=86.3

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      +.++.++|.+++    +.++.|++++|.++.++. .+..+.+|+.+++++|.++.++  .+..+++|++|++++|.+..+
T Consensus        13 ~~~L~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l   88 (680)
T 1ziw_A           13 HLKLTQVPDDLP----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL   88 (680)
T ss_dssp             SSCCSSCCSCSC----TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred             CCCccccccccC----CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc
Confidence            456888887543    689999999999999554 5799999999999999998875  467789999999999999986


Q ss_pred             ccc-cCCCCCCcEEEcCCCCCCCCc--CCCCCCCC
Q psy8464          79 LNV-LQSSPKLAYLNLCGNRIKDLE--TLEPLFGS  110 (111)
Q Consensus        79 ~~~-~~~~~~L~~l~l~~n~l~~~~--~~~~l~~l  110 (111)
                      ++. ++.++.|++|++++|.+.++.  .+..+++|
T Consensus        89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             ChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence            654 889999999999999998764  34444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.32  E-value=7.5e-12  Score=83.50  Aligned_cols=96  Identities=14%  Similarity=0.125  Sum_probs=81.0

Q ss_pred             CCCCCCCCCc-ccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCc-
Q psy8464           2 NSNLPFFEPD-TERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG-   78 (111)
Q Consensus         2 ~~~l~~~p~~-~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~-   78 (111)
                      ++.+..+++. +..+  +.+++|++++|.++. .|..+..+.+|+.+++++|.++.+|.. .+.+|++|++++|.+..+ 
T Consensus        30 ~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~  106 (520)
T 2z7x_B           30 QNYISELWTSDILSL--SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALP  106 (520)
T ss_dssp             SSCCCCCCHHHHTTC--TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCC
T ss_pred             CCcccccChhhcccc--ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCcccccc
Confidence            3456667653 4444  899999999999999 477889999999999999999988854 889999999999999863 


Q ss_pred             -ccccCCCCCCcEEEcCCCCCCC
Q psy8464          79 -LNVLQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        79 -~~~~~~~~~L~~l~l~~n~l~~  100 (111)
                       +..++.+++|++|++++|.+++
T Consensus       107 ~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B          107 ICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CCGGGGGCTTCCEEEEEESSCCG
T ss_pred             chhhhccCCcceEEEecCcccch
Confidence             3458899999999999999865

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.31  E-value=1e-11  Score=78.00  Aligned_cols=83  Identities=20%  Similarity=0.246  Sum_probs=40.2

Q ss_pred             CCccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEE
Q psy8464          18 IQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLN   92 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~   92 (111)
                      +.++.|++++|.+..  .|..+..+++|+.+++++|.++.++  .+..+++|+.|++++|.+....+ .+..++.|+.++
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  229 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  229 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred             cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence            344444444444443  3444444445555555555544432  34445555555555555554332 244455555555


Q ss_pred             cCCCCCCC
Q psy8464          93 LCGNRIKD  100 (111)
Q Consensus        93 l~~n~l~~  100 (111)
                      +++|.+.+
T Consensus       230 L~~N~l~~  237 (306)
T 2z66_A          230 YSLNHIMT  237 (306)
T ss_dssp             CTTSCCCB
T ss_pred             CCCCCCcc
Confidence            55555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.31  E-value=5.4e-12  Score=80.73  Aligned_cols=96  Identities=21%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             CCCCCCCC-cccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464           3 SNLPFFEP-DTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus         3 ~~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      +.+..+|+ .+...  +.++.|++++|.++.+ +..+..+.+|+.+++++|.++.++  .+..+++|++|++++|.+..+
T Consensus        62 n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l  139 (353)
T 2z80_A           62 NRITYISNSDLQRC--VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL  139 (353)
T ss_dssp             SCCCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS
T ss_pred             CcCcccCHHHhccC--CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCccc
Confidence            34555555 23334  6778888888888774 455677778888888888877776  266777788888888877765


Q ss_pred             cc--ccCCCCCCcEEEcCCCC-CCC
Q psy8464          79 LN--VLQSSPKLAYLNLCGNR-IKD  100 (111)
Q Consensus        79 ~~--~~~~~~~L~~l~l~~n~-l~~  100 (111)
                      +.  .+..+++|+++++++|. +..
T Consensus       140 ~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A          140 GETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             CSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             CchhhhccCCCCcEEECCCCccccc
Confidence            44  35677777777777773 443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.31  E-value=2.1e-11  Score=81.96  Aligned_cols=83  Identities=22%  Similarity=0.308  Sum_probs=53.4

Q ss_pred             CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.++.+ ++.+..+.+|+.+++++|.++.++  .+..+.+|++|++++|.+..+.+ .++.++.|++|++
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  131 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence            6677777777777764 344566777777777777766654  46666666667766666665433 2556666666666


Q ss_pred             CCCCCCC
Q psy8464          94 CGNRIKD  100 (111)
Q Consensus        94 ~~n~l~~  100 (111)
                      ++|.+.+
T Consensus       132 ~~n~l~~  138 (570)
T 2z63_A          132 AHNLIQS  138 (570)
T ss_dssp             CSSCCCC
T ss_pred             CCCccce
Confidence            6666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.30  E-value=2.9e-12  Score=80.98  Aligned_cols=91  Identities=20%  Similarity=0.282  Sum_probs=60.1

Q ss_pred             CCCCcccccCcCCccEEEcCC-CCCCC-hhhhhhcCCCccEEecccccCC-CCC-CCCCCCCCCEEEcCCCcCCCc-ccc
Q psy8464           7 FFEPDTERMGKIQIKELNLDN-CRSTN-IAALTSEFTNLKILSAINVGLT-SLK-GFPELPALTRLELSDNRISGG-LNV   81 (111)
Q Consensus         7 ~~p~~~~~~~~~~l~~l~l~~-n~i~~-~~~~~~~~~~l~~l~l~~~~~~-~l~-~~~~l~~L~~l~l~~n~~~~~-~~~   81 (111)
                      .+|+.+..+  +.+++|++++ |.+.. +|..+..+++|+.+++++|.++ .+| .+..+++|++|++++|.+... +..
T Consensus        67 ~~~~~l~~l--~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A           67 PIPSSLANL--PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             ECCGGGGGC--TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             ccChhHhCC--CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence            356666555  6777777774 66665 6666677777777777777776 344 466667777777777776632 334


Q ss_pred             cCCCCCCcEEEcCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~   99 (111)
                      ++.+++|++|++++|.++
T Consensus       145 ~~~l~~L~~L~L~~N~l~  162 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             GGGCTTCCEEECCSSCCE
T ss_pred             HhcCCCCCeEECcCCccc
Confidence            666677777777777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.30  E-value=2.2e-11  Score=80.00  Aligned_cols=96  Identities=17%  Similarity=0.170  Sum_probs=79.8

Q ss_pred             CCCCCCC-cccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           4 NLPFFEP-DTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         4 ~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      .+..+++ .+..+  +.++.|++++|.+.. .+..+..+++|+.+++++|.++.++  .+..+++|++|++++|++..++
T Consensus       310 ~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          310 EINKIDDNAFWGL--THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             CCCEECTTTTTTC--TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccChhHhcCc--ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence            3444433 33334  899999999999998 4677799999999999999998874  6888999999999999999866


Q ss_pred             cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          80 NV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +. +..++.|+.+++++|.++.-
T Consensus       388 ~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          388 DGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCC
T ss_pred             HhHhccCCcccEEEccCCCcccC
Confidence            54 67899999999999999754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.29  E-value=2.8e-12  Score=78.06  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=42.7

Q ss_pred             CCccEEEcCCCC-CCChhh-hhhcCCCccEEeccc-ccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCCCCCCc---
Q psy8464          18 IQIKELNLDNCR-STNIAA-LTSEFTNLKILSAIN-VGLTSLK--GFPELPALTRLELSDNRISGGLNVLQSSPKLA---   89 (111)
Q Consensus        18 ~~l~~l~l~~n~-i~~~~~-~~~~~~~l~~l~l~~-~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~---   89 (111)
                      +.++.|++++|. ++.++. .+..+++|+.+++++ |.++.++  .|..+++|+.|++++|.+..++ .++.++.|+   
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~  133 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFF  133 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc-cccccccccccc
Confidence            556666666664 555433 345556666666665 5555544  3445555555555555555422 244444444   


Q ss_pred             EEEcCCC-CCCC
Q psy8464          90 YLNLCGN-RIKD  100 (111)
Q Consensus        90 ~l~l~~n-~l~~  100 (111)
                      .+++++| .++.
T Consensus       134 ~L~l~~N~~l~~  145 (239)
T 2xwt_C          134 ILEITDNPYMTS  145 (239)
T ss_dssp             EEEEESCTTCCE
T ss_pred             EEECCCCcchhh
Confidence            5555554 4433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.29  E-value=1.8e-12  Score=88.72  Aligned_cols=98  Identities=18%  Similarity=0.255  Sum_probs=66.7

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCC------------------hhhhhh--cCCCccEEecccccCCC-CC-CCCC
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTN------------------IAALTS--EFTNLKILSAINVGLTS-LK-GFPE   61 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~------------------~~~~~~--~~~~l~~l~l~~~~~~~-l~-~~~~   61 (111)
                      ++..+|+.+..+  +.+++|++++|.++.                  +|..++  .+.+|+.+++++|.+.. +| .+..
T Consensus       194 ~l~~ip~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          194 NITFVSKAVMRL--TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             EEEEECGGGGGC--TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CCccCCHHHhcc--cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            344466666666  778888888888887                  777766  78888888888877554 45 5667


Q ss_pred             CCCCCEEEcCCCc-CCC--cccccCCC------CCCcEEEcCCCCCCCCcC
Q psy8464          62 LPALTRLELSDNR-ISG--GLNVLQSS------PKLAYLNLCGNRIKDLET  103 (111)
Q Consensus        62 l~~L~~l~l~~n~-~~~--~~~~~~~~------~~L~~l~l~~n~l~~~~~  103 (111)
                      +++|++|++++|. +..  ++..++.+      +.|++|++++|.++.++.
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~  322 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV  322 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence            7777777777776 653  23334433      667777777777665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.29  E-value=4.7e-11  Score=78.97  Aligned_cols=82  Identities=23%  Similarity=0.385  Sum_probs=35.5

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      +.++.|++++|.+..++. +..+++|+.+++++|.++..+.+..+++|+.|++++|.+.. .+.++.++.|+.+++++|.
T Consensus       287 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          287 TALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC
T ss_pred             CccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCC-chhhccCCCCCEEeCCCCc
Confidence            334444444444444322 23344444444444444433323334444444444444443 2334444555555555555


Q ss_pred             CCCC
Q psy8464          98 IKDL  101 (111)
Q Consensus        98 l~~~  101 (111)
                      ++++
T Consensus       365 l~~~  368 (466)
T 1o6v_A          365 ISDL  368 (466)
T ss_dssp             CCBC
T ss_pred             cCcc
Confidence            4443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.28  E-value=8.1e-12  Score=79.31  Aligned_cols=82  Identities=23%  Similarity=0.276  Sum_probs=37.3

Q ss_pred             CccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCC
Q psy8464          19 QIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCG   95 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~   95 (111)
                      .++.|++++|.++.++ ..+..+++|+.+++++|.++.++  .+..+++|+.|++++|.+..++..+..++.|+.+++++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC
Confidence            4444455555444422 33344444555555555444433  23444444455555444444333344444444444444


Q ss_pred             CCCCC
Q psy8464          96 NRIKD  100 (111)
Q Consensus        96 n~l~~  100 (111)
                      |.++.
T Consensus       274 N~l~~  278 (332)
T 2ft3_A          274 NNITK  278 (332)
T ss_dssp             SCCCB
T ss_pred             CCCCc
Confidence            44443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.28  E-value=7.4e-11  Score=74.81  Aligned_cols=60  Identities=30%  Similarity=0.363  Sum_probs=37.7

Q ss_pred             CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCC-C-CCCCCCCCCEEEcCCCcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSL-K-GFPELPALTRLELSDNRISG   77 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l-~-~~~~l~~L~~l~l~~n~~~~   77 (111)
                      +.++.|++++|.++.++. .+..+++|+.+++++|.++.+ + .+..+++|++|++++|.+..
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  114 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE  114 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc
Confidence            456666777776666433 456666677777766666665 3 45566666666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.27  E-value=1.5e-11  Score=77.16  Aligned_cols=81  Identities=21%  Similarity=0.257  Sum_probs=35.9

Q ss_pred             CCccEEEcCCCCCCCh---hhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCccc--ccCCCCCCcEE
Q psy8464          18 IQIKELNLDNCRSTNI---AALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLN--VLQSSPKLAYL   91 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~---~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l   91 (111)
                      +.++.|++++|.++..   +..+..+.+|+.+++++|.+..++ .+..+++|++|++++|.+....+  .+..++.|+++
T Consensus        52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  131 (306)
T 2z66_A           52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  131 (306)
T ss_dssp             TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred             ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence            4455555555555432   233333444444444444443333 23344445555555554443222  23344444444


Q ss_pred             EcCCCCC
Q psy8464          92 NLCGNRI   98 (111)
Q Consensus        92 ~l~~n~l   98 (111)
                      ++++|.+
T Consensus       132 ~l~~n~l  138 (306)
T 2z66_A          132 DISHTHT  138 (306)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCcC
Confidence            4444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.27  E-value=2.9e-11  Score=85.04  Aligned_cols=93  Identities=20%  Similarity=0.103  Sum_probs=49.0

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccC-CCC-C-CCCCCCCCCEEEcCCCcCCC
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGL-TSL-K-GFPELPALTRLELSDNRISG   77 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~-~~l-~-~~~~l~~L~~l~l~~n~~~~   77 (111)
                      ..++..+|.    . ++.++.|++++|.++. .+..+..+.+|+.|++++|.. ..+ + .+..+++|++|++++|.+..
T Consensus        13 ~~~L~~vP~----l-p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           13 FCNLTQVPQ----V-LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             CCCSSCCCS----S-CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             CCCCCCCCC----C-CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence            456677765    2 2566777777777766 344455556666666655532 222 2 34455555555555555544


Q ss_pred             ccc-ccCCCCCCcEEEcCCCCCC
Q psy8464          78 GLN-VLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        78 ~~~-~~~~~~~L~~l~l~~n~l~   99 (111)
                      ..+ .++.++.|++|++++|.+.
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~  110 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLS  110 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCS
T ss_pred             cCHhHccCCcccCEeeCcCCCCC
Confidence            322 2444555555555555444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=4.3e-12  Score=89.61  Aligned_cols=92  Identities=17%  Similarity=0.269  Sum_probs=42.8

Q ss_pred             CCCccc--ccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEeccccc-CCC--CC--------CCCCCCCCCEEEcCCC
Q psy8464           8 FEPDTE--RMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVG-LTS--LK--------GFPELPALTRLELSDN   73 (111)
Q Consensus         8 ~p~~~~--~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~-~~~--l~--------~~~~l~~L~~l~l~~n   73 (111)
                      +|+.+.  .+  +.++.|++++|.+.. +|..+..+++|+.+++++|. ++.  +|        .+..+++|+.|++++|
T Consensus       481 iP~~l~f~~L--~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          481 ENEELSWSNL--KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             TTSCCCGGGC--TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             CChhhhhccC--CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            454443  33  455555555555444 55555555555555555554 432  22        1222334455555555


Q ss_pred             cCCCccc--ccCCCCCCcEEEcCCCCCCCC
Q psy8464          74 RISGGLN--VLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        74 ~~~~~~~--~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      .+..++.  .++.++.|+.|++++|.++.+
T Consensus       559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l  588 (876)
T 4ecn_A          559 NLEEFPASASLQKMVKLGLLDCVHNKVRHL  588 (876)
T ss_dssp             CCCBCCCHHHHTTCTTCCEEECTTSCCCBC
T ss_pred             cCCccCChhhhhcCCCCCEEECCCCCcccc
Confidence            4443333  244444444455544444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.25  E-value=8e-11  Score=77.98  Aligned_cols=88  Identities=22%  Similarity=0.281  Sum_probs=76.5

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      +.++.|++++|.++.+| .+..+++|+.+++++|.++.++ +..+++|++|++++|.+... + ++.++.|++|++++|.
T Consensus        42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~  117 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNK  117 (457)
T ss_dssp             TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSC
T ss_pred             CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCc
Confidence            78999999999999987 5789999999999999999886 77889999999999999884 3 7889999999999999


Q ss_pred             CCCCcCCCCCCCC
Q psy8464          98 IKDLETLEPLFGS  110 (111)
Q Consensus        98 l~~~~~~~~l~~l  110 (111)
                      +++++ +..+++|
T Consensus       118 l~~l~-~~~l~~L  129 (457)
T 3bz5_A          118 LTKLD-VSQNPLL  129 (457)
T ss_dssp             CSCCC-CTTCTTC
T ss_pred             CCeec-CCCCCcC
Confidence            98864 4444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.24  E-value=6.5e-11  Score=79.37  Aligned_cols=40  Identities=25%  Similarity=0.321  Sum_probs=26.3

Q ss_pred             CCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCCCC
Q psy8464          61 ELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        61 ~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      .++.|+.|++++|++..+ +..+.++.|+.+++++|.++++
T Consensus       449 ~l~~L~~L~Ls~N~l~~i-p~~~~l~~L~~L~Ls~N~l~~~  488 (549)
T 2z81_A          449 FLPRLQELYISRNKLKTL-PDASLFPVLLVMKISRNQLKSV  488 (549)
T ss_dssp             CCTTCCEEECCSSCCSSC-CCGGGCTTCCEEECCSSCCCCC
T ss_pred             cCChhcEEECCCCccCcC-CCcccCccCCEEecCCCccCCc
Confidence            456677777777777653 3344566777777777777655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.24  E-value=5.3e-11  Score=81.54  Aligned_cols=83  Identities=13%  Similarity=0.152  Sum_probs=42.5

Q ss_pred             CccEEEcCCCCCCChhhhhh--cCCCccEEecccccCCCCC-CCCCCCCCCEEEcC------CCcCCCcc-cccCCCCCC
Q psy8464          19 QIKELNLDNCRSTNIAALTS--EFTNLKILSAINVGLTSLK-GFPELPALTRLELS------DNRISGGL-NVLQSSPKL   88 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~~~~--~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~------~n~~~~~~-~~~~~~~~L   88 (111)
                      .++.|++++|.++.+|..+.  .+++|+.+++++|.++.+| .+..+++|+.|+++      +|.+.... ..++.++.|
T Consensus       489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L  568 (636)
T 4eco_A          489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL  568 (636)
T ss_dssp             GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence            45555555555555555443  5555555555555555554 34445555555553      23333222 234455555


Q ss_pred             cEEEcCCCCCCCC
Q psy8464          89 AYLNLCGNRIKDL  101 (111)
Q Consensus        89 ~~l~l~~n~l~~~  101 (111)
                      +.|++++|.+..+
T Consensus       569 ~~L~Ls~N~l~~i  581 (636)
T 4eco_A          569 TQLQIGSNDIRKV  581 (636)
T ss_dssp             CEEECCSSCCCBC
T ss_pred             CEEECCCCcCCcc
Confidence            5555555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.23  E-value=2.1e-11  Score=77.02  Aligned_cols=40  Identities=25%  Similarity=0.240  Sum_probs=17.0

Q ss_pred             CCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCC
Q psy8464          60 PELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        60 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~   99 (111)
                      ..+++|+.|++++|.+...++.+..++.|++|++++|.++
T Consensus       218 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE
T ss_pred             hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc
Confidence            3344444444444444432333333444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.23  E-value=2.4e-11  Score=77.80  Aligned_cols=98  Identities=21%  Similarity=0.207  Sum_probs=78.7

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCC-CC--CCCCCCCCCE-EEcCCCcCC
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTS-LK--GFPELPALTR-LELSDNRIS   76 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~-l~--~~~~l~~L~~-l~l~~n~~~   76 (111)
                      +++++++|..++    +++++|++++|+|+.+|. .|..+++|+.|++++|.+.+ ++  .|..+.++.. +.+..|++.
T Consensus        18 ~~~Lt~iP~~l~----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           18 ESKVTEIPSDLP----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             STTCCSCCTTCC----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred             CCCCCccCcCcC----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence            467889997652    679999999999999776 46899999999999999755 55  5777877664 556678888


Q ss_pred             Ccccc-cCCCCCCcEEEcCCCCCCCCcC
Q psy8464          77 GGLNV-LQSSPKLAYLNLCGNRIKDLET  103 (111)
Q Consensus        77 ~~~~~-~~~~~~L~~l~l~~n~l~~~~~  103 (111)
                      .+++. +..+++|+++++++|.++.+..
T Consensus        94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           94 YINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             EECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             ccCchhhhhccccccccccccccccCCc
Confidence            76554 7789999999999999887644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.23  E-value=7.7e-11  Score=74.26  Aligned_cols=90  Identities=22%  Similarity=0.195  Sum_probs=57.9

Q ss_pred             CCccEEEcCCCCCCChhhh----hhcCCCccEEecccccCCCC-C-CCCCC---CCCCEEEcCCCcCCCcccccCCCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAAL----TSEFTNLKILSAINVGLTSL-K-GFPEL---PALTRLELSDNRISGGLNVLQSSPKL   88 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~----~~~~~~l~~l~l~~~~~~~l-~-~~~~l---~~L~~l~l~~n~~~~~~~~~~~~~~L   88 (111)
                      +.+++|++++|.++.++..    +..+.+|+.+++++|.++.. | .+..+   ++|++|++++|.+..++..+.  +.|
T Consensus       197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L  274 (310)
T 4glp_A          197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKL  274 (310)
T ss_dssp             CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCC
T ss_pred             CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCC
Confidence            4566666666666654442    35667777777777777765 3 33333   578888888888876544442  678


Q ss_pred             cEEEcCCCCCCCCcCCCCCCC
Q psy8464          89 AYLNLCGNRIKDLETLEPLFG  109 (111)
Q Consensus        89 ~~l~l~~n~l~~~~~~~~l~~  109 (111)
                      +.|++++|.+++++.+..+.+
T Consensus       275 ~~L~Ls~N~l~~~~~~~~l~~  295 (310)
T 4glp_A          275 RVLDLSSNRLNRAPQPDELPE  295 (310)
T ss_dssp             SCEECCSCCCCSCCCTTSCCC
T ss_pred             CEEECCCCcCCCCchhhhCCC
Confidence            888888888877644444433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.22  E-value=7.5e-11  Score=83.38  Aligned_cols=94  Identities=16%  Similarity=0.200  Sum_probs=58.3

Q ss_pred             CCCCCCcccccCcCCccEEEcCCCC-CCC--hhhhhhcCC-------CccEEecccccCCCCCC---CCCCCCCCEEEcC
Q psy8464           5 LPFFEPDTERMGKIQIKELNLDNCR-STN--IAALTSEFT-------NLKILSAINVGLTSLKG---FPELPALTRLELS   71 (111)
Q Consensus         5 l~~~p~~~~~~~~~~l~~l~l~~n~-i~~--~~~~~~~~~-------~l~~l~l~~~~~~~l~~---~~~l~~L~~l~l~   71 (111)
                      ...+|+.+..+  +.++.|++++|. ++.  +|..++.+.       +|+.+++++|.++.+|.   +..+++|+.|+++
T Consensus       504 ~~~iP~~l~~L--~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls  581 (876)
T 4ecn_A          504 MTQLPDFLYDL--PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV  581 (876)
T ss_dssp             CCSCCGGGGGC--SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECT
T ss_pred             CccChHHHhCC--CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECC
Confidence            44566666655  677777777776 664  666555444       66777777776666554   5566666666666


Q ss_pred             CCcCCCcccccCCCCCCcEEEcCCCCCCCC
Q psy8464          72 DNRISGGLNVLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        72 ~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +|.+..+ +.++.++.|+.|++++|.+..+
T Consensus       582 ~N~l~~l-p~~~~L~~L~~L~Ls~N~l~~l  610 (876)
T 4ecn_A          582 HNKVRHL-EAFGTNVKLTDLKLDYNQIEEI  610 (876)
T ss_dssp             TSCCCBC-CCCCTTSEESEEECCSSCCSCC
T ss_pred             CCCcccc-hhhcCCCcceEEECcCCccccc
Confidence            6666642 3555566666666666665544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=4.6e-11  Score=76.22  Aligned_cols=80  Identities=21%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             EEEcCCC-CCCChhhhhhcCCCccEEeccc-ccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCC
Q psy8464          22 ELNLDNC-RSTNIAALTSEFTNLKILSAIN-VGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGN   96 (111)
Q Consensus        22 ~l~l~~n-~i~~~~~~~~~~~~l~~l~l~~-~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n   96 (111)
                      .++++++ .++.+|. +..+.+|+.|++++ |.++.++  .|..+.+|+.|++++|.+..+++. |+.++.|+.|++++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            5689998 9999999 88999999999996 9999987  588999999999999999986664 789999999999999


Q ss_pred             CCCCCc
Q psy8464          97 RIKDLE  102 (111)
Q Consensus        97 ~l~~~~  102 (111)
                      .++.++
T Consensus        91 ~l~~~~   96 (347)
T 2ifg_A           91 ALESLS   96 (347)
T ss_dssp             CCSCCC
T ss_pred             ccceeC
Confidence            998874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.21  E-value=2.6e-10  Score=75.50  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=18.7

Q ss_pred             CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC
Q psy8464          19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK   57 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~   57 (111)
                      .+++|++++|.++.+| .++.+.+|+.+++++|.++.+|
T Consensus       132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp  169 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLP  169 (454)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccC
Confidence            4555555555555544 2444555555555555444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.20  E-value=8.5e-11  Score=74.18  Aligned_cols=86  Identities=21%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             CCccEEEcCCCCCCChhh----hhhcCCCccEEecccccCCCCC---CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcE
Q psy8464          18 IQIKELNLDNCRSTNIAA----LTSEFTNLKILSAINVGLTSLK---GFPELPALTRLELSDNRISGGLNVLQSSPKLAY   90 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~----~~~~~~~l~~l~l~~~~~~~l~---~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~   90 (111)
                      +.+++|++++|.++.++.    .+..+++|+.+++++|.++..+   .+..+++|+.|++++|.++.++..+.  +.|++
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~  278 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV  278 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence            455555555555553221    1234456666666666655522   23345566666666666665433333  56666


Q ss_pred             EEcCCCCCCCCcCCC
Q psy8464          91 LNLCGNRIKDLETLE  105 (111)
Q Consensus        91 l~l~~n~l~~~~~~~  105 (111)
                      |++++|.+++++.+.
T Consensus       279 L~Ls~N~l~~~p~~~  293 (312)
T 1wwl_A          279 LDLSYNRLDRNPSPD  293 (312)
T ss_dssp             EECCSSCCCSCCCTT
T ss_pred             EECCCCCCCCChhHh
Confidence            666666666654433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.20  E-value=1.1e-10  Score=82.15  Aligned_cols=86  Identities=23%  Similarity=0.246  Sum_probs=64.8

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.+.. .+..+..+++|+.+++++|.++.+.  .+..+++|+.|++++|.+..+.+. +..+++|++|++
T Consensus       290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  369 (844)
T 3j0a_A          290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL  369 (844)
T ss_dssp             CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred             CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence            677888888888877 4556677888888888888887763  577778888888888888765443 667788888888


Q ss_pred             CCCCCCCCcC
Q psy8464          94 CGNRIKDLET  103 (111)
Q Consensus        94 ~~n~l~~~~~  103 (111)
                      ++|.++.+..
T Consensus       370 s~N~l~~i~~  379 (844)
T 3j0a_A          370 RDNALTTIHF  379 (844)
T ss_dssp             ETCCSCCCSS
T ss_pred             CCCCCCcccC
Confidence            8888776544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.19  E-value=3.7e-11  Score=75.83  Aligned_cols=82  Identities=29%  Similarity=0.360  Sum_probs=48.0

Q ss_pred             CCccEEEcCCCCCCChhhhhhcC-----CCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc---cccc--CCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEF-----TNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG---LNVL--QSS   85 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~-----~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~---~~~~--~~~   85 (111)
                      +.+++|++++|.++..|..+..+     ++|+.+++++|.+..++  .+..+++|++|++++|.+...   ++.+  +.+
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            66777777777776665555554     66777777777666654  455666666666666664321   1122  344


Q ss_pred             CCCcEEEcCCCCCC
Q psy8464          86 PKLAYLNLCGNRIK   99 (111)
Q Consensus        86 ~~L~~l~l~~n~l~   99 (111)
                      +.|++|++++|.++
T Consensus       201 ~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          201 PTLQVLALRNAGME  214 (312)
T ss_dssp             TTCCEEECTTSCCC
T ss_pred             CCCCEEECCCCcCc
Confidence            55555555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.19  E-value=4.3e-10  Score=76.41  Aligned_cols=87  Identities=22%  Similarity=0.289  Sum_probs=47.3

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccccc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVL   82 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~   82 (111)
                      +++..+|+.++    +.++.|++++|.++.+|   ..+++|+.+++++|.++.+|.+..  +|+.|++++|.+..+++  
T Consensus        69 n~L~~lp~~l~----~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--  137 (571)
T 3cvr_A           69 LNLSSLPDNLP----PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--  137 (571)
T ss_dssp             SCCSCCCSCCC----TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--
T ss_pred             CCCCccCHhHc----CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--
Confidence            34555665432    45666666666666666   335566666666666665554222  55555555555554222  


Q ss_pred             CCCCCCcEEEcCCCCCCCC
Q psy8464          83 QSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        83 ~~~~~L~~l~l~~n~l~~~  101 (111)
                       .++.|+.|++++|.++++
T Consensus       138 -~l~~L~~L~Ls~N~l~~l  155 (571)
T 3cvr_A          138 -LPALLEYINADNNQLTML  155 (571)
T ss_dssp             -CCTTCCEEECCSSCCSCC
T ss_pred             -cCccccEEeCCCCccCcC
Confidence             344455555555554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.19  E-value=2.9e-14  Score=84.81  Aligned_cols=91  Identities=22%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             CCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCC-CCCCCCCCEEEcCCCcCCCcccccCC
Q psy8464           6 PFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG-FPELPALTRLELSDNRISGGLNVLQS   84 (111)
Q Consensus         6 ~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~l~~L~~l~l~~n~~~~~~~~~~~   84 (111)
                      +++|..+..+  +.+++|++++|.++.+| .+..+.+|+.+++++|.++.+|. +..+++|+.|++++|.+.. .+.++.
T Consensus        38 ~~l~~~~~~l--~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~  113 (198)
T 1ds9_A           38 EKMDATLSTL--KACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LSGIEK  113 (198)
T ss_dssp             CCCHHHHHHT--TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HHHHHH
T ss_pred             hhhhHHHhcC--CCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CCcccc
Confidence            3344444445  67777777777777766 55667777777777777766552 2233456666666665554 223444


Q ss_pred             CCCCcEEEcCCCCCCC
Q psy8464          85 SPKLAYLNLCGNRIKD  100 (111)
Q Consensus        85 ~~~L~~l~l~~n~l~~  100 (111)
                      ++.|+.+++++|.+++
T Consensus       114 l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHSSEEEESEEECCC
T ss_pred             CCCCCEEECCCCcCCc
Confidence            4555555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.18  E-value=3.1e-11  Score=76.35  Aligned_cols=81  Identities=22%  Similarity=0.253  Sum_probs=72.3

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN   96 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n   96 (111)
                      +.++.|++++|.++.++.. ..+++|+.+++++|.++.++ .+..+++|+.|++++|.+..+++.+..++.|+.+++++|
T Consensus       169 ~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             TTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred             CcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence            7899999999999997655 35899999999999999887 677889999999999999986666888999999999999


Q ss_pred             CCC
Q psy8464          97 RIK   99 (111)
Q Consensus        97 ~l~   99 (111)
                      .+.
T Consensus       248 ~~~  250 (317)
T 3o53_A          248 GFH  250 (317)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            987

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.17  E-value=1.9e-10  Score=80.24  Aligned_cols=82  Identities=23%  Similarity=0.268  Sum_probs=36.0

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.+.. +|..+..++.|+.+++++|.++. +| .+..+++|+.|++++|.+....+ .++.++.|+.+++
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  521 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL  521 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence            344444444444443 44444444444444444444442 22 33444444455555444442222 2444444444444


Q ss_pred             CCCCCC
Q psy8464          94 CGNRIK   99 (111)
Q Consensus        94 ~~n~l~   99 (111)
                      ++|.+.
T Consensus       522 ~~N~l~  527 (768)
T 3rgz_A          522 SNNSFS  527 (768)
T ss_dssp             CSSCCE
T ss_pred             CCCccc
Confidence            444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.14  E-value=7.1e-10  Score=75.36  Aligned_cols=76  Identities=20%  Similarity=0.179  Sum_probs=38.0

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      +.++.|++++|.++.+|. +..  +|+.+++++|.++.+|.  .+++|+.|++++|.+..++.   .++.|+.|++++|.
T Consensus       100 ~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          100 ASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ  171 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred             CCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC
Confidence            556666666666666555 322  55555555555555443  34445555555555444221   23344444444444


Q ss_pred             CCCC
Q psy8464          98 IKDL  101 (111)
Q Consensus        98 l~~~  101 (111)
                      ++++
T Consensus       172 L~~l  175 (571)
T 3cvr_A          172 LTFL  175 (571)
T ss_dssp             CSCC
T ss_pred             CCCc
Confidence            4433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.14  E-value=9.5e-10  Score=72.79  Aligned_cols=83  Identities=20%  Similarity=0.313  Sum_probs=45.2

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      +.++.+++++|.++.++..   ..+++.+++++|.++.+|.+..+.+|++|++++|.+..++..   ...|+++++++|.
T Consensus       111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~  184 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ  184 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC
T ss_pred             CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCc
Confidence            3445555555555443321   145666677777666666666666677777777666653221   2345555555555


Q ss_pred             CCCCcCCCC
Q psy8464          98 IKDLETLEP  106 (111)
Q Consensus        98 l~~~~~~~~  106 (111)
                      +++++.+..
T Consensus       185 l~~l~~~~~  193 (454)
T 1jl5_A          185 LEELPELQN  193 (454)
T ss_dssp             CSSCCCCTT
T ss_pred             CCcCccccC
Confidence            555444333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.13  E-value=1e-10  Score=73.68  Aligned_cols=80  Identities=25%  Similarity=0.340  Sum_probs=69.0

Q ss_pred             CCccEEEcCCCCCCCh-hhhhhcC---CCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEE
Q psy8464          18 IQIKELNLDNCRSTNI-AALTSEF---TNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLN   92 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~-~~~~~~~---~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~   92 (111)
                      +.++.|++++|.+... |..+..+   ++|+.+++++|.++.+| .+.  ++|+.|++++|++..+ +.+..++.|+.++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~  300 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLT  300 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEE
Confidence            7899999999999994 7666565   69999999999999988 443  7999999999999974 4467889999999


Q ss_pred             cCCCCCCC
Q psy8464          93 LCGNRIKD  100 (111)
Q Consensus        93 l~~n~l~~  100 (111)
                      +++|.+++
T Consensus       301 L~~N~l~~  308 (310)
T 4glp_A          301 LDGNPFLV  308 (310)
T ss_dssp             CSSTTTSC
T ss_pred             CcCCCCCC
Confidence            99999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.11  E-value=8e-10  Score=75.77  Aligned_cols=66  Identities=24%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCC
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG   77 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~   77 (111)
                      +++..+|..++    +.++.|++++|.++.+|.   .+++|+.|++++|.++.+|.  .+++|++|++++|.+..
T Consensus        50 n~L~~lp~~l~----~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           50 SGLTTLPDCLP----AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             SCCSCCCSCCC----TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC
T ss_pred             CCcCccChhhC----CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC
Confidence            45666665433    456666666666666554   35566666666666665553  33445555555554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.09  E-value=3.1e-13  Score=80.33  Aligned_cols=94  Identities=26%  Similarity=0.253  Sum_probs=76.6

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccc--c
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLN--V   81 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~--~   81 (111)
                      .+..+| .+..+  +.+++|++++|.++.+|..+..+++|+.+++++|.++.++.+..+++|+.|++++|.+..+..  .
T Consensus        59 ~l~~l~-~~~~l--~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~  135 (198)
T 1ds9_A           59 NIEKIS-SLSGM--ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK  135 (198)
T ss_dssp             EESCCC-CHHHH--TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHH
T ss_pred             CCcccc-ccccC--CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHH
Confidence            345566 56666  889999999999999888777788999999999999887766667889999999999987443  4


Q ss_pred             cCCCCCCcEEEcCCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~~  100 (111)
                      +..++.|+++++++|.+.+
T Consensus       136 l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          136 LAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HTTTTTCSEEEECSCHHHH
T ss_pred             HhcCCCCCEEEecCCcccc
Confidence            7788999999999998744

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.08  E-value=1e-09  Score=75.25  Aligned_cols=78  Identities=26%  Similarity=0.198  Sum_probs=55.0

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      ++++.|++++|.++.+|   ..+.+|+.+++++|.++.+|.  .+++|+.|++++|.+..+++.+..++.|+.+++++|.
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence            45667777777777665   345667777777777776664  4567778888888877655557777788888888887


Q ss_pred             CCC
Q psy8464          98 IKD  100 (111)
Q Consensus        98 l~~  100 (111)
                      +++
T Consensus       296 l~~  298 (622)
T 3g06_A          296 LSE  298 (622)
T ss_dssp             CCH
T ss_pred             CCC
Confidence            764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.08  E-value=1.6e-10  Score=77.05  Aligned_cols=81  Identities=22%  Similarity=0.253  Sum_probs=72.5

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN   96 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n   96 (111)
                      +.++.|++++|.++.++.. ..+++|+.+++++|.++.++ .+..+++|+.|++++|.+..+++.++.++.|+.+++++|
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             TTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred             CcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence            8999999999999997654 35899999999999999987 777889999999999999986666888899999999999


Q ss_pred             CCC
Q psy8464          97 RIK   99 (111)
Q Consensus        97 ~l~   99 (111)
                      .+.
T Consensus       248 ~l~  250 (487)
T 3oja_A          248 GFH  250 (487)
T ss_dssp             CBC
T ss_pred             CCc
Confidence            987

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.98  E-value=3.2e-09  Score=67.97  Aligned_cols=105  Identities=23%  Similarity=0.132  Sum_probs=65.3

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecc-cccCCCCC--CCCCCCCCCEEEcCCCcCCCccc
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAI-NVGLTSLK--GFPELPALTRLELSDNRISGGLN   80 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~-~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~   80 (111)
                      ++..+|+..+......++.|++++|.++.++..+....+++.+++. +|.++.+|  .|..+.+|+.|++++|+++.+++
T Consensus       140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            3444444333322245677888888888876665555677777776 46777777  46778888888888888877544


Q ss_pred             ccCCCCCCcEEEcCC-CCCCCCcCCCCCCCC
Q psy8464          81 VLQSSPKLAYLNLCG-NRIKDLETLEPLFGS  110 (111)
Q Consensus        81 ~~~~~~~L~~l~l~~-n~l~~~~~~~~l~~l  110 (111)
                      .  .+..|+.|.+.+ +.++.++.+..+++|
T Consensus       220 ~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L  248 (350)
T 4ay9_X          220 Y--GLENLKKLRARSTYNLKKLPTLEKLVAL  248 (350)
T ss_dssp             S--SCTTCCEEECTTCTTCCCCCCTTTCCSC
T ss_pred             h--hhccchHhhhccCCCcCcCCCchhCcCh
Confidence            3  244455555443 345556555555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.78  E-value=2.6e-09  Score=67.63  Aligned_cols=92  Identities=21%  Similarity=0.207  Sum_probs=61.6

Q ss_pred             CCCCCcccccCcCCccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCC-cCCC--c
Q psy8464           6 PFFEPDTERMGKIQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDN-RISG--G   78 (111)
Q Consensus         6 ~~~p~~~~~~~~~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n-~~~~--~   78 (111)
                      ...++.....  +.++.|++++|.++.  ++..+..+++|+.+++++|.++. .+ .+..+++|++|++++| .+.+  +
T Consensus        83 ~~~~~~~~~~--~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l  160 (336)
T 2ast_B           83 DQPLAEHFSP--FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL  160 (336)
T ss_dssp             CSCCCSCCCC--BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHH
T ss_pred             cccchhhccC--CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHH
Confidence            3344444444  778888888888775  66677778888888888887664 22 4556777888888877 4553  1


Q ss_pred             ccccCCCCCCcEEEcCCC-CCC
Q psy8464          79 LNVLQSSPKLAYLNLCGN-RIK   99 (111)
Q Consensus        79 ~~~~~~~~~L~~l~l~~n-~l~   99 (111)
                      ...+..++.|++|++++| .++
T Consensus       161 ~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          161 QTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             HHHHHHCTTCCEEECCCCTTCC
T ss_pred             HHHHhcCCCCCEEcCCCCCCcC
Confidence            222556777777777777 665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.72  E-value=5.2e-09  Score=67.23  Aligned_cols=82  Identities=18%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             CCccEEEcCCCCCCChh-----hhhhcCC-CccEEecccccCCCCC--CCCCC-----CCCCEEEcCCCcCCCcccc---
Q psy8464          18 IQIKELNLDNCRSTNIA-----ALTSEFT-NLKILSAINVGLTSLK--GFPEL-----PALTRLELSDNRISGGLNV---   81 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~-----~~~~~~~-~l~~l~l~~~~~~~l~--~~~~l-----~~L~~l~l~~n~~~~~~~~---   81 (111)
                      ..++.|++++|.++..+     ..+..++ +|+.+++++|.++...  .+..+     +.|++|++++|.+......   
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            34666666666665522     3334454 5666666666555432  11111     4555555555555432211   


Q ss_pred             --cCCC-CCCcEEEcCCCCCC
Q psy8464          82 --LQSS-PKLAYLNLCGNRIK   99 (111)
Q Consensus        82 --~~~~-~~L~~l~l~~n~l~   99 (111)
                        +..+ +.|++|++++|.++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHhCCCCccEEECcCCcCC
Confidence              2222 44555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.64  E-value=2.7e-08  Score=64.26  Aligned_cols=81  Identities=21%  Similarity=0.257  Sum_probs=36.0

Q ss_pred             CccEEEcCCCCCCC--hh---hhhhcCCCccEEecccccCCC------CC-CCCCCCCCCEEEcCCCcCC-----Ccccc
Q psy8464          19 QIKELNLDNCRSTN--IA---ALTSEFTNLKILSAINVGLTS------LK-GFPELPALTRLELSDNRIS-----GGLNV   81 (111)
Q Consensus        19 ~l~~l~l~~n~i~~--~~---~~~~~~~~l~~l~l~~~~~~~------l~-~~~~l~~L~~l~l~~n~~~-----~~~~~   81 (111)
                      .++.|++++|.++.  ++   ..+..++.|+.+++++|.+..      ++ .+..+++|+.|++++|.+.     .++..
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence            44555555555542  33   233344455555555555441      12 3334445555555555542     11122


Q ss_pred             cCCCCCCcEEEcCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~   99 (111)
                      +..++.|+.|++++|.++
T Consensus       240 l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             GGGCTTCCEEECTTCCCC
T ss_pred             HccCCCcCEEECCCCCCc
Confidence            334444555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=1.3e-07  Score=60.05  Aligned_cols=83  Identities=18%  Similarity=0.235  Sum_probs=70.3

Q ss_pred             CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCC-EEEcCCCcCCCccc-ccCCCCCCcEEE
Q psy8464          18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALT-RLELSDNRISGGLN-VLQSSPKLAYLN   92 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~-~l~l~~n~~~~~~~-~~~~~~~L~~l~   92 (111)
                      +.++.+++++|.++.++. .|..+.+|+.+++..| ++.++  .|.++.+|+ .+.+.. .+..+.+ .|..|+.|+.++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            789999999999999666 4688999999999998 77777  689999999 999988 6665443 488999999999


Q ss_pred             cCCCCCCCCc
Q psy8464          93 LCGNRIKDLE  102 (111)
Q Consensus        93 l~~n~l~~~~  102 (111)
                      +..|.++.+.
T Consensus       304 l~~n~i~~I~  313 (329)
T 3sb4_A          304 ATGDKITTLG  313 (329)
T ss_dssp             ECSSCCCEEC
T ss_pred             eCCCccCccc
Confidence            9999888763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.61  E-value=1.6e-08  Score=65.30  Aligned_cols=83  Identities=29%  Similarity=0.359  Sum_probs=40.6

Q ss_pred             CCccEEEcCCCCCC-----ChhhhhhcCCCccEEecccccCCCC-----C-CC--CCCCCCCEEEcCCCcCCC-----cc
Q psy8464          18 IQIKELNLDNCRST-----NIAALTSEFTNLKILSAINVGLTSL-----K-GF--PELPALTRLELSDNRISG-----GL   79 (111)
Q Consensus        18 ~~l~~l~l~~n~i~-----~~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~--~~l~~L~~l~l~~n~~~~-----~~   79 (111)
                      +.++.|++++|.++     .++..+..+++|+.+++++|.++..     + .+  ..+++|+.|++++|.+..     ++
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence            44555555555553     1444445555555555555555432     1 12  224555555555555554     22


Q ss_pred             ccc-CCCCCCcEEEcCCCCCCC
Q psy8464          80 NVL-QSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        80 ~~~-~~~~~L~~l~l~~n~l~~  100 (111)
                      ..+ ..++.|++|++++|.+++
T Consensus       296 ~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          296 TVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhcCCCceEEEccCCcCCc
Confidence            223 235556666666655543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.57  E-value=8.3e-08  Score=59.65  Aligned_cols=60  Identities=30%  Similarity=0.323  Sum_probs=29.7

Q ss_pred             cCCCccEEecccccCCCCCCCC----CCCCCCEEEcCCCcCCCcccccCCCC--CCcEEEcCCCCCC
Q psy8464          39 EFTNLKILSAINVGLTSLKGFP----ELPALTRLELSDNRISGGLNVLQSSP--KLAYLNLCGNRIK   99 (111)
Q Consensus        39 ~~~~l~~l~l~~~~~~~l~~~~----~l~~L~~l~l~~n~~~~~~~~~~~~~--~L~~l~l~~n~l~   99 (111)
                      .++.|+.|++++|.++.++.+.    .+++|+.|++++|.+.++ +.+..+.  .|+.|++++|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence            3455555555555555543222    345555555555555542 2222222  5555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.45  E-value=1.2e-07  Score=60.04  Aligned_cols=79  Identities=23%  Similarity=0.292  Sum_probs=35.8

Q ss_pred             CCccEEEcCCC-CCCC--hhhhhhcCC-CccEEeccccc--CC--CCC-CCCCCCCCCEEEcCCCc-CCC-cccccCCCC
Q psy8464          18 IQIKELNLDNC-RSTN--IAALTSEFT-NLKILSAINVG--LT--SLK-GFPELPALTRLELSDNR-ISG-GLNVLQSSP   86 (111)
Q Consensus        18 ~~l~~l~l~~n-~i~~--~~~~~~~~~-~l~~l~l~~~~--~~--~l~-~~~~l~~L~~l~l~~n~-~~~-~~~~~~~~~   86 (111)
                      +.++.|++++| .++.  ++..+..++ +|+.+++++|.  ++  .++ .+..+++|+.|++++|. +.+ .++.++.++
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~  247 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  247 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence            44455555555 4443  344444444 55555555542  21  111 12234455555555555 322 122344555


Q ss_pred             CCcEEEcCCC
Q psy8464          87 KLAYLNLCGN   96 (111)
Q Consensus        87 ~L~~l~l~~n   96 (111)
                      .|++|++++|
T Consensus       248 ~L~~L~l~~~  257 (336)
T 2ast_B          248 YLQHLSLSRC  257 (336)
T ss_dssp             TCCEEECTTC
T ss_pred             CCCEeeCCCC
Confidence            5555555555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.44  E-value=1.2e-07  Score=60.86  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=17.1

Q ss_pred             CccEEEcCCCCCCC-hhh----hhhcC-CCccEEecccccCCC
Q psy8464          19 QIKELNLDNCRSTN-IAA----LTSEF-TNLKILSAINVGLTS   55 (111)
Q Consensus        19 ~l~~l~l~~n~i~~-~~~----~~~~~-~~l~~l~l~~~~~~~   55 (111)
                      .++.|++++|.++. .+.    .+... ..|+.+++++|.++.
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            45555555555544 221    11222 355555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.41  E-value=2.9e-07  Score=57.23  Aligned_cols=74  Identities=28%  Similarity=0.352  Sum_probs=59.0

Q ss_pred             CCccEEEcCCCCCCChh---hhhhcCCCccEEecccccCCCCCC---CCCCCCCCEEEcCCCcCCCccc--------ccC
Q psy8464          18 IQIKELNLDNCRSTNIA---ALTSEFTNLKILSAINVGLTSLKG---FPELPALTRLELSDNRISGGLN--------VLQ   83 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~---~~~~~~~~l~~l~l~~~~~~~l~~---~~~l~~L~~l~l~~n~~~~~~~--------~~~   83 (111)
                      +.++.|++++|.++.++   ..+..+++|+.|++++|.++.+..   +..+ +|+.|++.+|.+..-.+        .+.
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence            68999999999999844   566789999999999999998753   4444 89999999999874221        245


Q ss_pred             CCCCCcEEE
Q psy8464          84 SSPKLAYLN   92 (111)
Q Consensus        84 ~~~~L~~l~   92 (111)
                      .+++|+.|+
T Consensus       249 ~~P~L~~LD  257 (267)
T 3rw6_A          249 RFPKLLRLD  257 (267)
T ss_dssp             HCTTCCEES
T ss_pred             HCcccCeEC
Confidence            788888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=1.1e-06  Score=55.78  Aligned_cols=87  Identities=13%  Similarity=0.054  Sum_probs=70.8

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCcc-EEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLK-ILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~-~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      ++..+|+..+.-. ..++.+++.+| +..++. .|..+.+|+ .+.+.. .++.++  .|.++.+|+.+++..|.+..+.
T Consensus       237 ~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~  313 (329)
T 3sb4_A          237 NATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG  313 (329)
T ss_dssp             CCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred             CcceecHhhhhCC-CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence            4777887766654 78999999998 777544 568899999 999988 777776  7999999999999999998765


Q ss_pred             cc-cCCCCCCcEEEc
Q psy8464          80 NV-LQSSPKLAYLNL   93 (111)
Q Consensus        80 ~~-~~~~~~L~~l~l   93 (111)
                      +. |..+++|+.++.
T Consensus       314 ~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          314 DELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTTCTTCCCCEEEC
T ss_pred             hhhhcCCcchhhhcc
Confidence            43 778999988763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.29  E-value=2.1e-07  Score=60.27  Aligned_cols=82  Identities=23%  Similarity=0.235  Sum_probs=47.8

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCC-----C-CCCCCCCCCEEEcCCCcCCCcc-----cc
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSL-----K-GFPELPALTRLELSDNRISGGL-----NV   81 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~l~~L~~l~l~~n~~~~~~-----~~   81 (111)
                      +.++.|++++|.++.     +...+...+.|+.+++++|.++..     . .+.....|+.|++++|.+.+..     ..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            456667777776655     222334556677777777766541     1 2344456777777777765411     11


Q ss_pred             cCCCCCCcEEEcCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~   99 (111)
                      +...+.|++|++++|.++
T Consensus       235 L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          235 AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHCSSCCEEECTTSSCC
T ss_pred             HHhCCCCCEEeccCCCCC
Confidence            334566777777777765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.29  E-value=4.9e-07  Score=59.42  Aligned_cols=80  Identities=23%  Similarity=0.310  Sum_probs=35.6

Q ss_pred             CccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCC------C-CCCCCCCCCEEEcCCCcCCC-----cccc
Q psy8464          19 QIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSL------K-GFPELPALTRLELSDNRISG-----GLNV   81 (111)
Q Consensus        19 ~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l------~-~~~~l~~L~~l~l~~n~~~~-----~~~~   81 (111)
                      .++.|++++|.++.     ++..+..+++|+.+++++|.+...      + .+..+++|+.|++++|.+..     +...
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            45555555555544     233334445555555555544331      0 11124455555555555443     1112


Q ss_pred             cCCCCCCcEEEcCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRI   98 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l   98 (111)
                      +..++.|+++++++|.+
T Consensus       280 l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          280 LRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHHCTTCCEEECTTCCC
T ss_pred             HhhCCCcceEECCCCCC
Confidence            22344455555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.26  E-value=4.5e-07  Score=59.57  Aligned_cols=34  Identities=41%  Similarity=0.537  Sum_probs=15.3

Q ss_pred             ccEEecccccCCC-----CC-CCCCCCCCCEEEcCCCcCC
Q psy8464          43 LKILSAINVGLTS-----LK-GFPELPALTRLELSDNRIS   76 (111)
Q Consensus        43 l~~l~l~~~~~~~-----l~-~~~~l~~L~~l~l~~n~~~   76 (111)
                      |+.+++++|.++.     ++ .+..+++|++|++++|.+.
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence            4445555444442     11 2344445555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.17  E-value=1.2e-06  Score=51.48  Aligned_cols=82  Identities=23%  Similarity=0.231  Sum_probs=51.3

Q ss_pred             CCccEEEcCCC-CCCC-----hhhhhhcCCCccEEecccccCCCC-----C-CCCCCCCCCEEEcCCCcCCCc-----cc
Q psy8464          18 IQIKELNLDNC-RSTN-----IAALTSEFTNLKILSAINVGLTSL-----K-GFPELPALTRLELSDNRISGG-----LN   80 (111)
Q Consensus        18 ~~l~~l~l~~n-~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~l~~L~~l~l~~n~~~~~-----~~   80 (111)
                      +.++.|++++| .+..     +...+.....++.|++++|.+..-     . .+.....|++|++++|.+.+.     ..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            56778888887 7765     233334556788888888877541     1 233345677777777777641     12


Q ss_pred             ccCCCCCCcEEEc--CCCCCC
Q psy8464          81 VLQSSPKLAYLNL--CGNRIK   99 (111)
Q Consensus        81 ~~~~~~~L~~l~l--~~n~l~   99 (111)
                      .+...+.|++|++  ++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHhCCCceEEEecCCCCCCC
Confidence            3445566777777  667665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.15  E-value=1.1e-06  Score=51.65  Aligned_cols=82  Identities=15%  Similarity=0.186  Sum_probs=63.6

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCC-----C-CCCCCCCCCEEEc--CCCcCCCc-----c
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSL-----K-GFPELPALTRLEL--SDNRISGG-----L   79 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~l~~L~~l~l--~~n~~~~~-----~   79 (111)
                      +.+++|++++|.+..     +...+.....|+.|++++|.+..-     . .+.....|+.|++  ++|.+...     .
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            679999999999987     333445668899999999998862     2 4566678999999  88998752     1


Q ss_pred             cccCCCCCCcEEEcCCCCCC
Q psy8464          80 NVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        80 ~~~~~~~~L~~l~l~~n~l~   99 (111)
                      ..+...+.|++|++++|.+.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            22445688999999999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.12  E-value=6.3e-07  Score=58.04  Aligned_cols=38  Identities=21%  Similarity=0.203  Sum_probs=17.1

Q ss_pred             CCCCCEEEcCCCcCCCc-----ccccCCCCCCcEEEcCCCCCC
Q psy8464          62 LPALTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        62 l~~L~~l~l~~n~~~~~-----~~~~~~~~~L~~l~l~~n~l~   99 (111)
                      .+.|++|++++|.+.+.     ...+...+.|+.|++++|.++
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            34455555555554321     011233345555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.89  E-value=5e-06  Score=56.20  Aligned_cols=84  Identities=19%  Similarity=0.173  Sum_probs=57.0

Q ss_pred             CCccEEEcCCCC--CCC-hhhhh-hcCCCccEEecccccCCC--CC-CCCCCCCCCEEEcCCCcCCCc-ccc-cCCCCCC
Q psy8464          18 IQIKELNLDNCR--STN-IAALT-SEFTNLKILSAINVGLTS--LK-GFPELPALTRLELSDNRISGG-LNV-LQSSPKL   88 (111)
Q Consensus        18 ~~l~~l~l~~n~--i~~-~~~~~-~~~~~l~~l~l~~~~~~~--l~-~~~~l~~L~~l~l~~n~~~~~-~~~-~~~~~~L   88 (111)
                      +.++.|+++.|.  ++. ....+ ..+++|+.+++++|.++.  ++ .+..+++|+.|++++|.+... .+. +..++.|
T Consensus       436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L  515 (592)
T 3ogk_B          436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL  515 (592)
T ss_dssp             TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSC
T ss_pred             CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCcc
Confidence            678888886543  555 23333 447788888888888764  22 245678899999998887532 222 3467889


Q ss_pred             cEEEcCCCCCCCC
Q psy8464          89 AYLNLCGNRIKDL  101 (111)
Q Consensus        89 ~~l~l~~n~l~~~  101 (111)
                      +.|++++|.+++.
T Consensus       516 ~~L~ls~n~it~~  528 (592)
T 3ogk_B          516 RYLWVQGYRASMT  528 (592)
T ss_dssp             CEEEEESCBCCTT
T ss_pred             CeeECcCCcCCHH
Confidence            9999999987643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.78  E-value=0.00012  Score=47.98  Aligned_cols=81  Identities=9%  Similarity=0.026  Sum_probs=47.2

Q ss_pred             CCccEEEcCCCCCC-----C-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCC
Q psy8464          18 IQIKELNLDNCRST-----N-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKL   88 (111)
Q Consensus        18 ~~l~~l~l~~n~i~-----~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L   88 (111)
                      ..|+.+.+.++.+.     . -+..|..+.+|+.+.+. +.++.++  .|.++.+|+.+.+..+ +..+.. .|..+ .|
T Consensus       271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L  347 (401)
T 4fdw_A          271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI  347 (401)
T ss_dssp             TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred             CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence            45666666655554     2 23344556666666666 3355555  5666777777777544 443222 36666 77


Q ss_pred             cEEEcCCCCCCCC
Q psy8464          89 AYLNLCGNRIKDL  101 (111)
Q Consensus        89 ~~l~l~~n~l~~~  101 (111)
                      +.+.+.+|....+
T Consensus       348 ~~l~l~~n~~~~l  360 (401)
T 4fdw_A          348 KEVKVEGTTPPQV  360 (401)
T ss_dssp             CEEEECCSSCCBC
T ss_pred             CEEEEcCCCCccc
Confidence            7787777766544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.76  E-value=0.00015  Score=40.26  Aligned_cols=54  Identities=20%  Similarity=0.142  Sum_probs=39.6

Q ss_pred             cEEEcCCCCCC--ChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCC
Q psy8464          21 KELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRIS   76 (111)
Q Consensus        21 ~~l~l~~n~i~--~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~   76 (111)
                      ..++.+++.++  .+|..+  ...++.|++++|.++.++  .|..+.+|+.+++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36788888887  677542  235788888888888877  4667778888888888764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.75  E-value=6.4e-06  Score=48.16  Aligned_cols=83  Identities=11%  Similarity=0.153  Sum_probs=60.5

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEeccccc-CCCCC--CCCCC----CCCCEEEcCCCc-CCCc-ccccCCCCC
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVG-LTSLK--GFPEL----PALTRLELSDNR-ISGG-LNVLQSSPK   87 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~-~~~l~--~~~~l----~~L~~l~l~~n~-~~~~-~~~~~~~~~   87 (111)
                      -.++.||++++.|+. --..+..+++|+.|+++++. ++.-.  .+..+    ++|++|+++++. +++. ...+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468999999999988 22334789999999999985 55422  23332    479999999874 6641 233668899


Q ss_pred             CcEEEcCCCC-CCC
Q psy8464          88 LAYLNLCGNR-IKD  100 (111)
Q Consensus        88 L~~l~l~~n~-l~~  100 (111)
                      |++|+++++. +++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            9999999875 553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.60  E-value=0.00017  Score=39.97  Aligned_cols=49  Identities=12%  Similarity=0.045  Sum_probs=39.2

Q ss_pred             CCCCC--CCCCcccccCcCCccEEEcCCCCCCChhhh-hhcCCCccEEecccccCC
Q psy8464           2 NSNLP--FFEPDTERMGKIQIKELNLDNCRSTNIAAL-TSEFTNLKILSAINVGLT   54 (111)
Q Consensus         2 ~~~l~--~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~-~~~~~~l~~l~l~~~~~~   54 (111)
                      ++.|+  .+|..++    ++++.|++++|.|+.++.. |..+..|+.+++.+|.+.
T Consensus        17 ~~~L~~~~vP~~lp----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           17 RRGLTWASLPTAFP----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             SSCCCTTTSCSCCC----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCCccccCCCCCC----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            34566  7876532    6799999999999996654 588999999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.54  E-value=0.00043  Score=46.84  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=44.3

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCCC----------------------------CCCCCCC
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSLK----------------------------GFPELPA   64 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~----------------------------~~~~l~~   64 (111)
                      +.++.|++++|.++.     ++..+..+++|+.+++.++.+..++                            .+..+.+
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            566666666666651     4444455666666666665543321                            2334445


Q ss_pred             CCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCC
Q psy8464          65 LTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        65 L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~   99 (111)
                      |+.+.+++.....++..+..+++|++|++++|.++
T Consensus       272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred             ccccCccccchhHHHHHHhhcCCCcEEecCCCcCC
Confidence            55555554433332222445667777777777653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.42  E-value=0.0013  Score=43.00  Aligned_cols=57  Identities=14%  Similarity=0.093  Sum_probs=27.8

Q ss_pred             hhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEcCC
Q psy8464          37 TSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNLCG   95 (111)
Q Consensus        37 ~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~   95 (111)
                      |..+.+|+.+++..|.++.++  .|. +..|+.+.+..+ +..+.. .|..+..|+.+.+..
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            344555555555555555544  232 345555555432 333222 244566666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.31  E-value=8.7e-05  Score=50.17  Aligned_cols=80  Identities=20%  Similarity=0.279  Sum_probs=40.5

Q ss_pred             CCccEEEcCCCCCCC-hhhhh-hcCCCccEEecccc-cCCC--CCC-CCCCCCCCEEEcCCCcCCCcc----cc-cCCCC
Q psy8464          18 IQIKELNLDNCRSTN-IAALT-SEFTNLKILSAINV-GLTS--LKG-FPELPALTRLELSDNRISGGL----NV-LQSSP   86 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~-~~~~~l~~l~l~~~-~~~~--l~~-~~~l~~L~~l~l~~n~~~~~~----~~-~~~~~   86 (111)
                      +.++.|++++|.++. .+..+ ..+++|+.+++.++ .++.  ++. ...+++|++|++++|.+.+..    +. ...++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            466777777776665 33333 24666677666665 3322  111 123456666666665543311    11 11444


Q ss_pred             CCcEEEcCCCC
Q psy8464          87 KLAYLNLCGNR   97 (111)
Q Consensus        87 ~L~~l~l~~n~   97 (111)
                      .|+.|++++|.
T Consensus       185 ~L~~L~l~~~~  195 (594)
T 2p1m_B          185 SLVSLNISCLA  195 (594)
T ss_dssp             CCCEEECTTCC
T ss_pred             cCcEEEecccC
Confidence            55555555553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.28  E-value=4.3e-05  Score=51.68  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=41.2

Q ss_pred             CCccEEEcCCCCCCC-hhhhh-hcCCCccEEecccccCCCCC--CC-CCCCCCCEEEcCCCcCCCcc-cc-cCCCCCCcE
Q psy8464          18 IQIKELNLDNCRSTN-IAALT-SEFTNLKILSAINVGLTSLK--GF-PELPALTRLELSDNRISGGL-NV-LQSSPKLAY   90 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~-~~~~~l~~l~l~~~~~~~l~--~~-~~l~~L~~l~l~~n~~~~~~-~~-~~~~~~L~~   90 (111)
                      +.++.|++++ .++. ....+ ..+++|+.+++++|.++...  .+ ..+++|+.|++++|.+.+.. .. ...+++|+.
T Consensus       432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  510 (594)
T 2p1m_B          432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS  510 (594)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred             CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence            4555666654 4443 22222 23556666666666654311  11 33566677777776664211 11 224566777


Q ss_pred             EEcCCCCC
Q psy8464          91 LNLCGNRI   98 (111)
Q Consensus        91 l~l~~n~l   98 (111)
                      |++++|.+
T Consensus       511 L~l~~~~~  518 (594)
T 2p1m_B          511 LWMSSCSV  518 (594)
T ss_dssp             EEEESSCC
T ss_pred             EeeeCCCC
Confidence            77776665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.65  E-value=0.0054  Score=39.41  Aligned_cols=57  Identities=16%  Similarity=0.174  Sum_probs=31.6

Q ss_pred             hhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc-cccCCCCCCcEEEcC
Q psy8464          37 TSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNLC   94 (111)
Q Consensus        37 ~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~   94 (111)
                      |..+.+|+.+.+.++.++.++  .|.++.+|+.+.+..+ ++.+. ..|..|.+|+.+.+.
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            355566666666666665555  4666666666666543 33322 225556666655554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.62  E-value=0.0015  Score=38.79  Aligned_cols=79  Identities=15%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             CCccEEEcCCC-CCCC-----hhhhhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCcCCCc-----cc
Q psy8464          18 IQIKELNLDNC-RSTN-----IAALTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNRISGG-----LN   80 (111)
Q Consensus        18 ~~l~~l~l~~n-~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~~~~~-----~~   80 (111)
                      +.++.|+++++ .|..     +-..+..-..|+.|++++|.+..-.      .+..=..|+.|++++|.+...     .+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            67888999885 7765     2333455677899999999887522      122335788899999888741     12


Q ss_pred             ccCCCCCCcEEEcCCC
Q psy8464          81 VLQSSPKLAYLNLCGN   96 (111)
Q Consensus        81 ~~~~~~~L~~l~l~~n   96 (111)
                      .+..-..|+.|+++++
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            3444456888888754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.60  E-value=0.022  Score=36.52  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=51.1

Q ss_pred             CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l   93 (111)
                      ..++.+.+..+ ++.+ ...+..+..++.+.+..+ +..++  .|..+.+|+.+.+..+.++.+.+ .|..|.+|+.+.+
T Consensus       240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            44555555544 3443 233455667777776543 55555  57888999999998888776443 3778999999998


Q ss_pred             CCC
Q psy8464          94 CGN   96 (111)
Q Consensus        94 ~~n   96 (111)
                      ..+
T Consensus       318 p~~  320 (379)
T 4h09_A          318 PTA  320 (379)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.55  E-value=0.018  Score=37.24  Aligned_cols=77  Identities=14%  Similarity=0.296  Sum_probs=44.1

Q ss_pred             CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc-cccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l   93 (111)
                      ..++.+.+. +.+..++. .|..+.+|+.+.+..+ ++.++  .|.++.+|+.+.+..+ ++.+. ..|..|.+|+.+.+
T Consensus       288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence            344444443 23344333 3455667777776543 55554  5777777777777543 44432 23667777887777


Q ss_pred             CCCC
Q psy8464          94 CGNR   97 (111)
Q Consensus        94 ~~n~   97 (111)
                      .++.
T Consensus       365 ~~~~  368 (394)
T 4gt6_A          365 SGSR  368 (394)
T ss_dssp             SSCH
T ss_pred             CCce
Confidence            7653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.45  E-value=0.019  Score=37.19  Aligned_cols=81  Identities=10%  Similarity=0.165  Sum_probs=53.6

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc-cccCCCCCCcEEEcC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNLC   94 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~   94 (111)
                      ..++.+.+..+...--...|..+..|+.+.+. +.+..++  .|.++.+|+.+.+..+ ++.+. ..|..|.+|+.+.+.
T Consensus       265 ~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          265 AYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             SSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             ccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            45666666554333233445667788888775 4466666  6888999999999764 44433 347789999999996


Q ss_pred             CCCCCCC
Q psy8464          95 GNRIKDL  101 (111)
Q Consensus        95 ~n~l~~~  101 (111)
                      .+ ++.+
T Consensus       343 ~s-v~~I  348 (394)
T 4gt6_A          343 SS-VTKI  348 (394)
T ss_dssp             TT-CCBC
T ss_pred             cc-cCEE
Confidence            54 5544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.20  E-value=0.00049  Score=40.21  Aligned_cols=61  Identities=15%  Similarity=0.255  Sum_probs=45.0

Q ss_pred             CCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCc-CCCc-ccccCCC----CCCcEEEcCCCC-CCC
Q psy8464          40 FTNLKILSAINVGLTSLK--GFPELPALTRLELSDNR-ISGG-LNVLQSS----PKLAYLNLCGNR-IKD  100 (111)
Q Consensus        40 ~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~-~~~~-~~~~~~~----~~L~~l~l~~n~-l~~  100 (111)
                      -..|+.++++++.++...  .+..+++|+.|+++++. +++. ...+...    +.|++|++++|. +++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            346999999999987643  56789999999999985 5541 2224443    479999999985 764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.13  E-value=0.013  Score=38.00  Aligned_cols=76  Identities=13%  Similarity=0.126  Sum_probs=49.1

Q ss_pred             CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l   93 (111)
                      ..++.+.+.++ ++.++ ..|..+.+|+.+.+..+ ++.++  .|.++.+|+.+.+..+ +..+.+ .|..|.+|+.+.+
T Consensus       297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            45666666543 44433 34566777888877543 66665  5778888888888765 544332 3778888888887


Q ss_pred             CCC
Q psy8464          94 CGN   96 (111)
Q Consensus        94 ~~n   96 (111)
                      ..+
T Consensus       374 p~~  376 (394)
T 4fs7_A          374 PKR  376 (394)
T ss_dssp             EGG
T ss_pred             CCC
Confidence            654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.95  E-value=0.0075  Score=39.00  Aligned_cols=83  Identities=17%  Similarity=0.268  Sum_probs=44.7

Q ss_pred             CCccEEEcCCCCCCC-hhhhh--hcCCCccEEeccc--cc------CCCCC-CC--CCCCCCCEEEcCCCcCCCcc-cc-
Q psy8464          18 IQIKELNLDNCRSTN-IAALT--SEFTNLKILSAIN--VG------LTSLK-GF--PELPALTRLELSDNRISGGL-NV-   81 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~--~~~~~l~~l~l~~--~~------~~~l~-~~--~~l~~L~~l~l~~n~~~~~~-~~-   81 (111)
                      ++|+.|++..+.++. ....+  ..+++|+.|++..  +.      +..+. .+  ..+++|+.|.+.+|.+.+.. .. 
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l  272 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF  272 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence            566666666666655 11222  2577888887642  11      11111 11  23567777777776664311 11 


Q ss_pred             --cCCCCCCcEEEcCCCCCCC
Q psy8464          82 --LQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        82 --~~~~~~L~~l~l~~n~l~~  100 (111)
                        ...++.|++|+++.|.+.+
T Consensus       273 a~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          273 LESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHCSSGGGCSEEECCSSCCBH
T ss_pred             HhCccCCCCCEEECCCCCCCh
Confidence              1245677777777777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.60  E-value=0.0031  Score=40.79  Aligned_cols=82  Identities=20%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             CCccEEEcCC--CC------CCChhhhh--hcCCCccEEecccccCCC-----CCCCCCCCCCCEEEcCCCcCCCc----
Q psy8464          18 IQIKELNLDN--CR------STNIAALT--SEFTNLKILSAINVGLTS-----LKGFPELPALTRLELSDNRISGG----   78 (111)
Q Consensus        18 ~~l~~l~l~~--n~------i~~~~~~~--~~~~~l~~l~l~~~~~~~-----l~~~~~l~~L~~l~l~~n~~~~~----   78 (111)
                      +.++.|+++.  +.      +..+...+  ..+++|+.|++.+|.+..     +.....+++|+.|+++.|.+.+.    
T Consensus       219 p~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~  298 (362)
T 2ra8_A          219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL  298 (362)
T ss_dssp             TTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHH
T ss_pred             CCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHH
Confidence            7788887742  11      21222222  246788999888877653     11123467889999988887652    


Q ss_pred             -ccccCCCCCCcEEEcCCCCCC
Q psy8464          79 -LNVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        79 -~~~~~~~~~L~~l~l~~n~l~   99 (111)
                       ...+..++.|+.|+++.|.++
T Consensus       299 L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          299 LLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHhhcccCCcceEEECCCCcCC
Confidence             111235678888999888775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.42  E-value=0.018  Score=37.33  Aligned_cols=83  Identities=13%  Similarity=0.166  Sum_probs=55.2

Q ss_pred             CCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc
Q psy8464           5 LPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV   81 (111)
Q Consensus         5 l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~   81 (111)
                      +..+++..+.-. ..|+.+++..+ ++.+ ...|..+.+|+.+.+..+ ++.++  .|.++.+|+.+.+..+ +......
T Consensus       308 i~~I~~~aF~~c-~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~  383 (394)
T 4fs7_A          308 VKFIGEEAFESC-TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYD  383 (394)
T ss_dssp             CCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGG
T ss_pred             cceechhhhcCC-CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhhe
Confidence            334444433333 67888888654 6665 445688899999999766 77776  6889999999998754 3322234


Q ss_pred             cCCCCCCcEE
Q psy8464          82 LQSSPKLAYL   91 (111)
Q Consensus        82 ~~~~~~L~~l   91 (111)
                      +..+.+|+.+
T Consensus       384 F~~c~~L~~I  393 (394)
T 4fs7_A          384 FEDTTKFKWI  393 (394)
T ss_dssp             BCTTCEEEEE
T ss_pred             ecCCCCCcEE
Confidence            6677766643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.23  E-value=0.017  Score=34.30  Aligned_cols=81  Identities=12%  Similarity=0.192  Sum_probs=56.5

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCc---CCCc-----
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNR---ISGG-----   78 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~---~~~~-----   78 (111)
                      ..++.|++++|.|.+     +-..+..-..|+.|++++|.+..-.      .+..=..|+.|+++++.   +...     
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            679999999999987     3334456678999999999997622      34444679999998653   3321     


Q ss_pred             ccccCCCCCCcEEEcCCCCC
Q psy8464          79 LNVLQSSPKLAYLNLCGNRI   98 (111)
Q Consensus        79 ~~~~~~~~~L~~l~l~~n~l   98 (111)
                      ...+..-+.|+.++++.+.+
T Consensus       150 a~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCcCeEeccCCCc
Confidence            11233456788898876653

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=80.62  E-value=4.4  Score=21.03  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=18.1

Q ss_pred             hhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCC
Q psy8464          37 TSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSD   72 (111)
Q Consensus        37 ~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~   72 (111)
                      |..+..|+.+.+..+ ++.+.  .|..+.+|+.+.+..
T Consensus        16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A           16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            344555555555443 34444  455566666555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 8e-07
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +  L L     ++I+ + S  T L+ L   N  ++ +     L  +  L    N+IS  
Sbjct: 308 NLTYLTLYFNNISDISPV-SSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS-D 365

Query: 79  LNVLQSSPKLAYLNLCGN 96
           L  L +  ++  L L   
Sbjct: 366 LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 1e-05
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 40  FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
             NL  L+     ++ +     L  L RL  ++N++S  ++ L +   + +L+   N+I 
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS-DVSSLANLTNINWLSAGHNQIS 364

Query: 100 DLETLEPL 107
           DL  L  L
Sbjct: 365 DLTPLANL 372

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 4e-05
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLN 92
          ++   +  L A  +G+ S+ G   L  LT++  S+N+++  +  L++  KL  + 
Sbjct: 41 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITPLKNLTKLVDIL 94

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.2 bits (77), Expect = 0.001
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
           ++ EL L   + +NI+ L    T L  L      L  +     L  LT L L  N IS  
Sbjct: 264 KLTELKLGANQISNISPLAG-LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS-D 321

Query: 79  LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           ++ + S  KL  L    N++ D+ +L  L
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSDVSSLANL 350

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 53  LTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
           +T      +L  +T L+     I   ++ ++    L  +N   N++ D+  L+ L
Sbjct: 34  VTDTVSQTDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITPLKNL 87

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 4e-05
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 27  NCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSP 86
           N  S  I +L     +L+ L+  N  L  L      P L RL  S N ++    V +   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLA---EVPELPQ 324

Query: 87  KLAYLNLCGNRIKDLETL 104
            L  L++  N +++   +
Sbjct: 325 NLKQLHVEYNPLREFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 9e-05
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            ++ELN+ N     +  L +    L+ L A    L  +        L +L +  N +   
Sbjct: 285 SLEELNVSNN---KLIELPALPPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREF 339

Query: 79  LNVLQSSPKLAYLN 92
            ++ +S   L  +N
Sbjct: 340 PDIPESVEDL-RMN 352

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 6e-05
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 59  FPELPALTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIKD 100
            P L     + L D  ++        + L+ +P LA LNL  N + D
Sbjct: 23  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 69

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 38  SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNL 93
           +  + L  L A +  ++ +     LP L  + L +N+IS  ++ L ++  L  + L
Sbjct: 170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.001
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 23 LNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRI 75
          +       T+     ++   +  LSA   G+T+++G   L  L  LEL DN+I
Sbjct: 24 IAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 4e-04
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 19  QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
            +  L+L + R   +    +    L++L A +  L ++ G   LP L  L L +NR+   
Sbjct: 21  LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 80

Query: 79  --LNVLQSSPKLAYLNLCGNRIKDLETLEP 106
             +  L S P+L  LNL GN +   E ++ 
Sbjct: 81  AAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 5e-04
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 23 LNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           NL     T+     +E  ++  + A N  + S++G   LP +T+L L+ N+++ 
Sbjct: 29 DNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 82

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 8e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 59  FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLE 105
           F        L++S  RI       L++  KL   +     +K L TLE
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 18  IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
           ++ +EL+L   +   I  L +       +   +  +  L GFP L  L  L +++NRI  
Sbjct: 18  VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR 77

Query: 78  GL-NVLQSSPKLAYLNLCGNRIKDLETLEP 106
               + Q+ P L  L L  N + +L  L+P
Sbjct: 78  IGEGLDQALPDLTELILTNNSLVELGDLDP 107

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 33.3 bits (74), Expect = 0.003
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 44  KILSAINVGLTSLKGFPELPALTRLELSDNRISG-GLNVLQSS-----PKLAYLNLCGNR 97
            + +     +       E   L  L L  N I    +  L++      P L +L L GNR
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313

Query: 98  IKDLETL 104
             + + +
Sbjct: 314 FSEEDDV 320

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 38 SEFTNLKILSAINVGLTSLKGFPELPA-LTRLELSDNRISG-GLNVLQSSPKLAYLNLCG 95
          S+  +   ++     LT+L   P+LP   T L LS+N +    L  L    +L  LNL  
Sbjct: 7  SKVASHLEVNCDKRNLTALP--PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 96 NR 97
            
Sbjct: 65 AE 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.52
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.34
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.29
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.28
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.27
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.23
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.16
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.05
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.03
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.99
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.84
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.09
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.17
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.15
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.66

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1.5e-16  Score=87.25  Aligned_cols=99  Identities=27%  Similarity=0.441  Sum_probs=86.4

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc--
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL--   79 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~--   79 (111)
                      +++++.++. +..+  +.+++|++++|.++.+|..+..+++|+.+++++|.++.++.+..+++|+.+++++|++..+.  
T Consensus         7 ~n~l~~l~~-l~~l--~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~   83 (124)
T d1dcea3           7 HKDLTVLCH-LEQL--LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI   83 (124)
T ss_dssp             TSCCSSCCC-GGGG--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT
T ss_pred             CCCCCCCcc-cccC--CCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCCCCc
Confidence            467777764 6777  89999999999999998888999999999999999999998889999999999999998754  


Q ss_pred             cccCCCCCCcEEEcCCCCCCCCcC
Q psy8464          80 NVLQSSPKLAYLNLCGNRIKDLET  103 (111)
Q Consensus        80 ~~~~~~~~L~~l~l~~n~l~~~~~  103 (111)
                      ..++.++.|+.+++++|.+++.+.
T Consensus        84 ~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          84 QPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             GGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             hhhcCCCCCCEEECCCCcCCcCcc
Confidence            246788999999999999976643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=8.5e-16  Score=89.78  Aligned_cols=96  Identities=23%  Similarity=0.262  Sum_probs=81.5

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCC-h-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTN-I-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG   77 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~-~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~   77 (111)
                      +++|..+|++++    +.+++|++++|.|+. + +..|..+.+|+.|++++|.+..++  .+..+..|++|++++|++..
T Consensus        17 ~~~L~~iP~~lp----~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          17 GRGLKEIPRDIP----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             TSCCSSCCSCCC----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             CCCcCccCCCCC----CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccc
Confidence            567888998653    679999999999976 4 455688999999999999998876  67788999999999999988


Q ss_pred             cccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          78 GLNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        78 ~~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +++. |..++.|++|++++|.++.+
T Consensus        93 l~~~~F~~l~~L~~L~L~~N~l~~i  117 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             cCHHHHhCCCcccccccCCcccccc
Confidence            6655 77899999999999999876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.2e-16  Score=88.67  Aligned_cols=88  Identities=26%  Similarity=0.348  Sum_probs=69.3

Q ss_pred             cCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCC
Q psy8464          17 KIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCG   95 (111)
Q Consensus        17 ~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~   95 (111)
                      +..+++|++++|+|+.+++.+..+.+|+.+++++|.++.++.+..+++|++|++++|++..+++. +..++.|+++++++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            36778888888888888776677888888888888888877777888888888888888775554 34678888888888


Q ss_pred             CCCCCCcCC
Q psy8464          96 NRIKDLETL  104 (111)
Q Consensus        96 n~l~~~~~~  104 (111)
                      |.+++++.+
T Consensus        97 N~i~~~~~l  105 (162)
T d1a9na_          97 NSLVELGDL  105 (162)
T ss_dssp             CCCCCGGGG
T ss_pred             ccccccccc
Confidence            888766543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.2e-15  Score=82.53  Aligned_cols=83  Identities=23%  Similarity=0.350  Sum_probs=74.3

Q ss_pred             cEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCC
Q psy8464          21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        21 ~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~   99 (111)
                      ++|++++|.++.++. +..+..++.+++++|.++.+| .+..+++|+.+++++|.++. .+.++.++.|+++++++|.++
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cCccccccccCeEECCCCccC
Confidence            579999999999875 688999999999999999998 68889999999999999998 466889999999999999998


Q ss_pred             CCcCCC
Q psy8464         100 DLETLE  105 (111)
Q Consensus       100 ~~~~~~  105 (111)
                      +++.+.
T Consensus        79 ~~~~~~   84 (124)
T d1dcea3          79 QSAAIQ   84 (124)
T ss_dssp             SSSTTG
T ss_pred             CCCCch
Confidence            776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.4e-13  Score=83.83  Aligned_cols=96  Identities=28%  Similarity=0.296  Sum_probs=80.9

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLN   80 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~   80 (111)
                      +++|+++|+.++    +.++.|++++|.++.++ +.|..+++|+.|++++|.++.++.+..+++|+.|++++|++...++
T Consensus        19 ~~~L~~iP~~lp----~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~   94 (266)
T d1p9ag_          19 KRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL   94 (266)
T ss_dssp             TSCCSSCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCeeCcCcC----cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            467888987653    67999999999999965 5678899999999999999988877788999999999999987555


Q ss_pred             ccCCCCCCcEEEcCCCCCCCC
Q psy8464          81 VLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        81 ~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      .+..++.|+.+++++|.+..+
T Consensus        95 ~~~~l~~L~~L~l~~~~~~~~  115 (266)
T d1p9ag_          95 LGQTLPALTVLDVSFNRLTSL  115 (266)
T ss_dssp             CTTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccccccccccccccee
Confidence            577888899999988877654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=9.1e-14  Score=81.01  Aligned_cols=99  Identities=19%  Similarity=0.117  Sum_probs=81.7

Q ss_pred             CCCCCC-CCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464           2 NSNLPF-FEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG   77 (111)
Q Consensus         2 ~~~l~~-~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~   77 (111)
                      ++.+.+ +++..+... +.++.|++++|.+.. .++.+..+..|+.+++++|.++.++  .|.++++|++|++++|.++.
T Consensus        38 ~N~i~~~~~~~~f~~l-~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~  116 (192)
T d1w8aa_          38 DNELGRISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             SCCCCSBCCSCSGGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcccccccccCCC-ceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccc
Confidence            345554 444433322 899999999999999 5667788999999999999999987  68999999999999999998


Q ss_pred             cccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          78 GLNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        78 ~~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      +++. +..++.|+++++++|.+...
T Consensus       117 i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         117 VMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cCHHHhcCCcccccccccccccccc
Confidence            7655 77899999999999998643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.4e-13  Score=77.00  Aligned_cols=96  Identities=21%  Similarity=0.178  Sum_probs=79.8

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCC-CCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNC-RSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG   77 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n-~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~   77 (111)
                      ++++..+|..+...  ++++.|+++++ .++.++ +.|..+++|+.+++++|+++.++  .|..+++|+.|++++|+++.
T Consensus        17 ~~~~~~~p~~l~~l--~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~   94 (156)
T d2ifga3          17 RDGALDSLHHLPGA--ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES   94 (156)
T ss_dssp             SSCCCTTTTTSCSC--SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred             CCCCccCcccccCc--cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcc
Confidence            45667778877777  89999999876 588855 45788999999999999999986  58889999999999999998


Q ss_pred             cccccCCCCCCcEEEcCCCCCC
Q psy8464          78 GLNVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        78 ~~~~~~~~~~L~~l~l~~n~l~   99 (111)
                      +++.......++++++++|.+.
T Consensus        95 l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          95 LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSTTTCSCCCCEEECCSSCCC
T ss_pred             cChhhhccccccccccCCCccc
Confidence            7666444457999999999885

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.5e-14  Score=80.12  Aligned_cols=98  Identities=21%  Similarity=0.274  Sum_probs=80.4

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-C-CCCCCCCCEEEcCCCcCCCcc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-G-FPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~-~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      ++.++.+|.....+  +.++.|++++|.++.+++ +..+++|+.+++++|.++.++ . +..+++++.|++++|.+..+.
T Consensus        27 ~n~I~~i~~~~~~l--~~L~~L~Ls~N~i~~l~~-~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~  103 (162)
T d1a9na_          27 GYKIPVIENLGATL--DQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG  103 (162)
T ss_dssp             TSCCCSCCCGGGGT--TCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGG
T ss_pred             CCCCCccCcccccc--ccCCEEECCCCCCCccCC-cccCcchhhhhcccccccCCCccccccccccccceeccccccccc
Confidence            35677776533334  889999999999999854 678999999999999999887 3 456889999999999998754


Q ss_pred             c--ccCCCCCCcEEEcCCCCCCCCc
Q psy8464          80 N--VLQSSPKLAYLNLCGNRIKDLE  102 (111)
Q Consensus        80 ~--~~~~~~~L~~l~l~~n~l~~~~  102 (111)
                      +  .+..++.|+++++++|.++..+
T Consensus       104 ~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_         104 DLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             GGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cccccccccccchhhcCCCcccccc
Confidence            3  4678999999999999987654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=2e-12  Score=75.56  Aligned_cols=91  Identities=24%  Similarity=0.383  Sum_probs=61.1

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      +.++.++++++.+...+. +..+++++.+++++|.+..++.+..+.+++.+++.+|.+.+ .+.++.+++|++|++++|+
T Consensus       106 ~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~-l~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         106 TNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-LKPLANLTTLERLDISSNK  183 (199)
T ss_dssp             TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccc-cchhhhhHHhhhhhhhhcccccccccccccccccccccccC-CccccCCCCCCEEECCCCC
Confidence            445555555555544332 34566666677777666666556667777888888887776 4457788888888888888


Q ss_pred             CCCCcCCCCCCCC
Q psy8464          98 IKDLETLEPLFGS  110 (111)
Q Consensus        98 l~~~~~~~~l~~l  110 (111)
                      +++++.+..+++|
T Consensus       184 i~~i~~l~~L~~L  196 (199)
T d2omxa2         184 VSDISVLAKLTNL  196 (199)
T ss_dssp             CCCCGGGGGCTTC
T ss_pred             CCCCccccCCCCC
Confidence            8887666666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=4e-12  Score=74.29  Aligned_cols=93  Identities=29%  Similarity=0.418  Sum_probs=52.7

Q ss_pred             ccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCC----------------------CCCCEEE
Q psy8464          12 TERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPEL----------------------PALTRLE   69 (111)
Q Consensus        12 ~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l----------------------~~L~~l~   69 (111)
                      +..+  +++++|++++|+++.+++ +..+++|+.+++++|.+..++.+..+                      ++|+.++
T Consensus        58 l~~l--~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  134 (199)
T d2omxa2          58 VEYL--NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE  134 (199)
T ss_dssp             GGGC--TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccC--CCcCcCccccccccCccc-ccCCcccccccccccccccccccccccccccccccccccccccccchhhhhHHhh
Confidence            4445  677777777777777554 56677777777777766654433333                      4444555


Q ss_pred             cCCCcCCCcccccCCCCCCcEEEcCCCCCCCCcCCCCCC
Q psy8464          70 LSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLF  108 (111)
Q Consensus        70 l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~l~  108 (111)
                      +++|.+.. ++.+..++.++.+++.+|.+++++.+..++
T Consensus       135 l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~  172 (199)
T d2omxa2         135 LSSNTISD-ISALSGLTSLQQLNFSSNQVTDLKPLANLT  172 (199)
T ss_dssp             CCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             hhhhhhcc-cccccccccccccccccccccCCccccCCC
Confidence            55444443 233444555555555555555544443333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=8.4e-12  Score=73.48  Aligned_cols=103  Identities=28%  Similarity=0.377  Sum_probs=74.1

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC----------------------CCC
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK----------------------GFP   60 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~----------------------~~~   60 (111)
                      +.+..+++ +..+  +++++|++++|+++.++. +..++.|+.+++.++.+..++                      .+.
T Consensus        78 n~i~~l~~-~~~l--~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~  153 (210)
T d1h6ta2          78 NKLTDIKP-LANL--KNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLS  153 (210)
T ss_dssp             SCCCCCGG-GTTC--TTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGG
T ss_pred             ccccCccc-cccC--cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34555553 3444  788888888888888774 567788888888877765432                      123


Q ss_pred             CCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCCCCcCCCCCCCC
Q psy8464          61 ELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS  110 (111)
Q Consensus        61 ~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~l~~l  110 (111)
                      .+++|+.+++++|.+.+ .+.+..+++|+.|++++|.+++++.+..+++|
T Consensus       154 ~l~~L~~l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L  202 (210)
T d1h6ta2         154 RLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHISDLRALAGLKNL  202 (210)
T ss_dssp             GCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred             ccccccccccccccccc-cccccCCCCCCEEECCCCCCCCChhhcCCCCC
Confidence            45678888888888876 44577888999999999998887766666655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=1.2e-11  Score=72.83  Aligned_cols=63  Identities=24%  Similarity=0.302  Sum_probs=45.8

Q ss_pred             ccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCC
Q psy8464          12 TERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG   77 (111)
Q Consensus        12 ~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~   77 (111)
                      +..+  ++++.|++++|.++.++. +..+++|+.+++++|.++.++.+..+++|+.++++++.+..
T Consensus        64 l~~l--~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~  126 (210)
T d1h6ta2          64 IQYL--PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD  126 (210)
T ss_dssp             GGGC--TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC
T ss_pred             HhhC--CCCCEEeCCCccccCccc-cccCccccccccccccccccccccccccccccccccccccc
Confidence            4444  778888888888877664 36677888888888888777766667777777777766554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.2e-11  Score=73.87  Aligned_cols=41  Identities=24%  Similarity=0.285  Sum_probs=22.2

Q ss_pred             CCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464          61 ELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        61 ~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~l~~~  101 (111)
                      .+..++.+++++|+++.+++. ++.++.|++|++++|.++.+
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l  187 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI  187 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ccccchhcccccccccccCccccccccccceeecccCCCccc
Confidence            344555555555555543333 44555566666666655554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=1.5e-11  Score=75.75  Aligned_cols=84  Identities=23%  Similarity=0.281  Sum_probs=49.1

Q ss_pred             CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcC
Q psy8464          18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLC   94 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~   94 (111)
                      ++++.+++++|.+.. .+..+..+..++.+++++|.++.++  .+..+++|++|++++|+++.+++.+..++.|+.|+++
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECC
Confidence            456666666666555 4444555566666666666665544  3445556666666666666544445556666666666


Q ss_pred             CCCCCCC
Q psy8464          95 GNRIKDL  101 (111)
Q Consensus        95 ~n~l~~~  101 (111)
                      +|+++.+
T Consensus       251 ~N~i~~i  257 (305)
T d1xkua_         251 NNNISAI  257 (305)
T ss_dssp             SSCCCCC
T ss_pred             CCccCcc
Confidence            6666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-11  Score=75.39  Aligned_cols=84  Identities=23%  Similarity=0.262  Sum_probs=41.8

Q ss_pred             CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      ..++.+++++|.++.++ ..+..+..++.+++++|.++.++  .+.+++.|+.+++++|++..+.+. ++.+++++++++
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence            44555555555555532 23344555555555555555443  344555555555555555443222 444555555555


Q ss_pred             CCCCCCCC
Q psy8464          94 CGNRIKDL  101 (111)
Q Consensus        94 ~~n~l~~~  101 (111)
                      ++|.+.++
T Consensus       209 ~~N~i~~~  216 (284)
T d1ozna_         209 FANNLSAL  216 (284)
T ss_dssp             CSSCCSCC
T ss_pred             cccccccc
Confidence            55555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.6e-11  Score=74.11  Aligned_cols=82  Identities=22%  Similarity=0.199  Sum_probs=38.7

Q ss_pred             CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464          18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL   93 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l   93 (111)
                      +.++.|++++|.++.+ +..+..++.|+.+++.+|.++.+.  .|..+++++++++++|.+...++. ++.++.|+++++
T Consensus       153 ~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             cchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEe
Confidence            3445555555555442 223344455555555555544432  344444555555555555443322 444445555555


Q ss_pred             CCCCCC
Q psy8464          94 CGNRIK   99 (111)
Q Consensus        94 ~~n~l~   99 (111)
                      ++|.+.
T Consensus       233 ~~N~l~  238 (284)
T d1ozna_         233 NDNPWV  238 (284)
T ss_dssp             CSSCEE
T ss_pred             cCCCCC
Confidence            555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=5.9e-11  Score=74.62  Aligned_cols=88  Identities=24%  Similarity=0.370  Sum_probs=62.7

Q ss_pred             cEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCCC
Q psy8464          21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        21 ~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~  100 (111)
                      +.+.+..|.++.++. +..+..++.+++++|.++.++.+..+++|+.|++++|+++. ++.++.+++|+++++++|.+++
T Consensus       288 ~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         288 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             SEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCB
T ss_pred             ccccccccccccccc-cchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCcCCC
Confidence            334444444444322 45667778888888888777666778889999999998887 4567888899999999999888


Q ss_pred             CcCCCCCCCC
Q psy8464         101 LETLEPLFGS  110 (111)
Q Consensus       101 ~~~~~~l~~l  110 (111)
                      +..+..+++|
T Consensus       366 l~~l~~l~~L  375 (384)
T d2omza2         366 LTPLANLTRI  375 (384)
T ss_dssp             CGGGTTCTTC
T ss_pred             ChhhccCCCC
Confidence            7656555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=2e-10  Score=68.05  Aligned_cols=91  Identities=33%  Similarity=0.403  Sum_probs=71.1

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      +.+..+.++++.+..... +..+..++.+++.++.+...+.+..+++|+.|++++|++.+ ++.++.+++|++|++++|+
T Consensus       129 ~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             TTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSC
T ss_pred             cchhhhhchhhhhchhhh-hccccccccccccccccccchhhcccccceecccCCCccCC-ChhhcCCCCCCEEECcCCc
Confidence            455556666666655333 35677889999999988877777888999999999999987 4557888999999999999


Q ss_pred             CCCCcCCCCCCCC
Q psy8464          98 IKDLETLEPLFGS  110 (111)
Q Consensus        98 l~~~~~~~~l~~l  110 (111)
                      ++++..+..+++|
T Consensus       207 lt~i~~l~~l~~L  219 (227)
T d1h6ua2         207 ISDVSPLANTSNL  219 (227)
T ss_dssp             CCBCGGGTTCTTC
T ss_pred             CCCCcccccCCCC
Confidence            9988777766665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=1.3e-14  Score=85.27  Aligned_cols=88  Identities=23%  Similarity=0.272  Sum_probs=51.4

Q ss_pred             CcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCC-CCCCCCCEEEcCCCcCCCcccccCCCCCC
Q psy8464          10 PDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGF-PELPALTRLELSDNRISGGLNVLQSSPKL   88 (111)
Q Consensus        10 ~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~~l~~L~~l~l~~n~~~~~~~~~~~~~~L   88 (111)
                      ..+..+  +++++|++++|.|+.++. +..+.+|+.+++++|.++.++.+ ..+..|+.|++++|.+.. ++.+..++.|
T Consensus        42 ~sl~~L--~~L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~-l~~~~~l~~L  117 (198)
T d1m9la_          42 ATLSTL--KACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LSGIEKLVNL  117 (198)
T ss_dssp             HHHHHT--TTCCEEECSEEEESCCCC-HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC-HHHHHHHHHS
T ss_pred             hHHhcc--cccceeECcccCCCCccc-ccCCccccChhhcccccccccccccccccccccccccccccc-cccccccccc
Confidence            334444  677777777777777653 56677777777777777765522 122345556665555554 2334444555


Q ss_pred             cEEEcCCCCCCCC
Q psy8464          89 AYLNLCGNRIKDL  101 (111)
Q Consensus        89 ~~l~l~~n~l~~~  101 (111)
                      +.+++++|.++++
T Consensus       118 ~~L~L~~N~i~~~  130 (198)
T d1m9la_         118 RVLYMSNNKITNW  130 (198)
T ss_dssp             SEEEESEEECCCH
T ss_pred             cccccccchhccc
Confidence            5555555555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=2.4e-10  Score=70.27  Aligned_cols=93  Identities=26%  Similarity=0.263  Sum_probs=76.1

Q ss_pred             CCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464           3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL   79 (111)
Q Consensus         3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~   79 (111)
                      .+|+++|+.++    +.+++|++++|+|+.+++ .+..+.+|+.+++.++.+..++  .|..+..|+.+++++|+++.++
T Consensus        20 ~~L~~lP~~l~----~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~   95 (305)
T d1xkua_          20 LGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP   95 (305)
T ss_dssp             SCCCSCCCSCC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred             CCCCccCCCCC----CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCc
Confidence            46888987643    679999999999999775 5788999999999999999875  5888999999999999998754


Q ss_pred             cccCCCCCCcEEEcCCCCCCCC
Q psy8464          80 NVLQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        80 ~~~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ..  ....+..+....|.+..+
T Consensus        96 ~~--~~~~l~~L~~~~n~l~~l  115 (305)
T d1xkua_          96 EK--MPKTLQELRVHENEITKV  115 (305)
T ss_dssp             SS--CCTTCCEEECCSSCCCBB
T ss_pred             cc--hhhhhhhhhccccchhhh
Confidence            43  334677788888877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1e-10  Score=65.94  Aligned_cols=84  Identities=20%  Similarity=0.151  Sum_probs=72.6

Q ss_pred             CccEEEcCCCCCCChhhhhhcCCCccEEecccc-cCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcC
Q psy8464          19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINV-GLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLC   94 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~-~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~   94 (111)
                      ....++++++.+...|..+..+.+++.+++.++ .++.++  .|..+++|+.|++++|+++.+.+. |..++.|++++++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345689999999988888888999999999766 588877  689999999999999999986554 7799999999999


Q ss_pred             CCCCCCCc
Q psy8464          95 GNRIKDLE  102 (111)
Q Consensus        95 ~n~l~~~~  102 (111)
                      +|.++.++
T Consensus        89 ~N~l~~l~   96 (156)
T d2ifga3          89 FNALESLS   96 (156)
T ss_dssp             SSCCSCCC
T ss_pred             CCCCcccC
Confidence            99998773

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=2.1e-10  Score=72.06  Aligned_cols=84  Identities=24%  Similarity=0.321  Sum_probs=73.6

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      ..+++|+++++.|+.++ ++..+++|+.|++++|.++.++.+..+++|++|++++|.+.. .+.++.++.|+.++++++.
T Consensus        44 ~~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~-i~~l~~l~~L~~L~~~~~~  121 (384)
T d2omza2          44 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQ  121 (384)
T ss_dssp             TTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCCCCCcc-ccccCCCCCEEeCcCCcCCCCccccCCccccccccccccccc-ccccccccccccccccccc
Confidence            57999999999999875 457899999999999999998888889999999999999987 4458889999999999998


Q ss_pred             CCCCcC
Q psy8464          98 IKDLET  103 (111)
Q Consensus        98 l~~~~~  103 (111)
                      ++++..
T Consensus       122 ~~~~~~  127 (384)
T d2omza2         122 ITDIDP  127 (384)
T ss_dssp             CCCCGG
T ss_pred             cccccc
Confidence            877643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.13  E-value=2.3e-11  Score=75.13  Aligned_cols=91  Identities=21%  Similarity=0.282  Sum_probs=69.5

Q ss_pred             CCCCcccccCcCCccEEEcCC-CCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc-cc
Q psy8464           7 FFEPDTERMGKIQIKELNLDN-CRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL-NV   81 (111)
Q Consensus         7 ~~p~~~~~~~~~~l~~l~l~~-n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~-~~   81 (111)
                      .+|+++..+  +.+++|++++ |.+.+ +|..++.+.+|+.+++++|.+..++  .+..+..|+.+++++|.+.... +.
T Consensus        67 ~lp~~l~~L--~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~  144 (313)
T d1ogqa_          67 PIPSSLANL--PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             ECCGGGGGC--TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             CCChHHhcC--ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchh
Confidence            477777777  8888888876 77775 8888888888888888888887654  4566777888888887766543 34


Q ss_pred             cCCCCCCcEEEcCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~   99 (111)
                      ++.++.++.+++++|.+.
T Consensus       145 l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             GGGCTTCCEEECCSSCCE
T ss_pred             hccCcccceeeccccccc
Confidence            777888888888888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.05  E-value=3.5e-13  Score=78.97  Aligned_cols=94  Identities=26%  Similarity=0.257  Sum_probs=76.6

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc--cc
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL--NV   81 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~--~~   81 (111)
                      +++.++ .+..+  ++++.|++++|.++.+++....+..|+.+++.+|.++.++.+..+++|+.|++++|.+..+.  ..
T Consensus        59 ~I~~i~-~l~~l--~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~  135 (198)
T d1m9la_          59 NIEKIS-SLSGM--ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK  135 (198)
T ss_dssp             EESCCC-CHHHH--TTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHH
T ss_pred             CCCCcc-cccCC--ccccChhhcccccccccccccccccccccccccccccccccccccccccccccccchhcccccccc
Confidence            345554 35566  89999999999999988776667789999999999998776667789999999999998743  24


Q ss_pred             cCCCCCCcEEEcCCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~~  100 (111)
                      +..++.|+.+++++|.+..
T Consensus       136 l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         136 LAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HTTTTTCSEEEECSSHHHH
T ss_pred             ccCCCccceeecCCCcccc
Confidence            7789999999999998743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.1e-10  Score=66.63  Aligned_cols=99  Identities=21%  Similarity=0.257  Sum_probs=77.1

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCC-CC--CCCCCCCCCEEEcC-CCcCC
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTS-LK--GFPELPALTRLELS-DNRIS   76 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~-l~--~~~~l~~L~~l~l~-~n~~~   76 (111)
                      +.++.++|+.++    +++++|++++|.++.++. .|.++++|+.+++++|.+.. ++  .|..+..++.+.+. .|.+.
T Consensus        17 ~~~l~~iP~~l~----~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~   92 (242)
T d1xwdc1          17 ESKVTEIPSDLP----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   92 (242)
T ss_dssp             SCSCSSCCSCSC----SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC
T ss_pred             CCCCCCcCCCCC----CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc
Confidence            356888887653    579999999999999766 46889999999999998876 33  56778888888775 45665


Q ss_pred             Ccccc-cCCCCCCcEEEcCCCCCCCCcCC
Q psy8464          77 GGLNV-LQSSPKLAYLNLCGNRIKDLETL  104 (111)
Q Consensus        77 ~~~~~-~~~~~~L~~l~l~~n~l~~~~~~  104 (111)
                      ...+. +..++.|+++++++|.+......
T Consensus        93 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~~  121 (242)
T d1xwdc1          93 YINPEAFQNLPNLQYLLISNTGIKHLPDV  121 (242)
T ss_dssp             EECTTSEECCTTCCEEEEESCCCCSCCCC
T ss_pred             ccccccccccccccccccchhhhcccccc
Confidence            54444 67889999999999988766443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=7.7e-09  Score=61.03  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=34.7

Q ss_pred             CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcC
Q psy8464           4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRI   75 (111)
Q Consensus         4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~   75 (111)
                      +++.++ ++..+  ++++.+++++|.+..++. +..++.++.+++.++.++.++.+..++.|+.+.++++..
T Consensus        52 ~i~~l~-~l~~l--~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~  119 (227)
T d1h6ua2          52 GVTTIE-GVQYL--NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI  119 (227)
T ss_dssp             CCCCCT-TGGGC--TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCC
T ss_pred             CCCcch-hHhcC--CCCcEeecCCceeecccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            344442 34444  555555555555555432 345555555555555555544444555555555554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.99  E-value=4.9e-09  Score=64.79  Aligned_cols=89  Identities=27%  Similarity=0.280  Sum_probs=66.8

Q ss_pred             CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc
Q psy8464           2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV   81 (111)
Q Consensus         2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~   81 (111)
                      ++.++.+|+.   .  +.+++|++++|+++.+|+.   ..+|+.|++.+|.++.++.++  ..|++|++++|.+..+ +.
T Consensus        47 ~~~L~~lp~~---~--~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~~l-p~  115 (353)
T d1jl5a_          47 NLGLSSLPEL---P--PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKL-PE  115 (353)
T ss_dssp             TSCCSCCCSC---C--TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSC-CC
T ss_pred             CCCCCCCCCC---C--CCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhhc--cccccccccccccccc-cc
Confidence            3456777742   2  6788899999999888754   457888888888888776432  4688999999998874 45


Q ss_pred             cCCCCCCcEEEcCCCCCCCC
Q psy8464          82 LQSSPKLAYLNLCGNRIKDL  101 (111)
Q Consensus        82 ~~~~~~L~~l~l~~n~l~~~  101 (111)
                      ++.++.|++++++++.+...
T Consensus       116 ~~~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         116 LQNSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSCC
T ss_pred             hhhhccceeecccccccccc
Confidence            67788899999988877644

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.96  E-value=3.2e-10  Score=69.95  Aligned_cols=86  Identities=19%  Similarity=0.052  Sum_probs=50.6

Q ss_pred             EEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCC-CcccccCCCCCCcEEEcCCCCCC
Q psy8464          23 LNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRIS-GGLNVLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        23 l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~   99 (111)
                      +++..+.... +|..+..+..++.+++.++.+...+ .+..++.++.|++++|++. .+++.++.++.|++|++++|.++
T Consensus       202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            3444433333 3444445556666666666665433 5556677777777777776 33444777777777777777776


Q ss_pred             C-CcCCCCCC
Q psy8464         100 D-LETLEPLF  108 (111)
Q Consensus       100 ~-~~~~~~l~  108 (111)
                      + ++.+..++
T Consensus       282 g~iP~~~~L~  291 (313)
T d1ogqa_         282 GEIPQGGNLQ  291 (313)
T ss_dssp             EECCCSTTGG
T ss_pred             ccCCCcccCC
Confidence            3 44443333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.84  E-value=2.6e-08  Score=61.43  Aligned_cols=85  Identities=27%  Similarity=0.312  Sum_probs=68.0

Q ss_pred             CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464          18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~   97 (111)
                      ..++.|+++++.++.+|+.   .++++.|++++|.++.+|..  +.+|+.|++++|.+..+ +.+  .+.|++|++++|.
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l-~~l--p~~L~~L~L~~n~  109 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKAL-SDL--PPLLEYLGVSNNQ  109 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCC-CSC--CTTCCEEECCSSC
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchh-hhh--ccccccccccccc
Confidence            4688999999999998864   56899999999999998842  45899999999998863 332  2469999999999


Q ss_pred             CCCCcCCCCCCCC
Q psy8464          98 IKDLETLEPLFGS  110 (111)
Q Consensus        98 l~~~~~~~~l~~l  110 (111)
                      +..++.+..+++|
T Consensus       110 l~~lp~~~~l~~L  122 (353)
T d1jl5a_         110 LEKLPELQNSSFL  122 (353)
T ss_dssp             CSSCCCCTTCTTC
T ss_pred             cccccchhhhccc
Confidence            9888766555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.3e-08  Score=60.42  Aligned_cols=60  Identities=23%  Similarity=0.119  Sum_probs=30.0

Q ss_pred             CccEEEcCCCCCCChhhhhhcCCCccEE-ecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464          19 QIKELNLDNCRSTNIAALTSEFTNLKIL-SAINVGLTSLK--GFPELPALTRLELSDNRISGG   78 (111)
Q Consensus        19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l-~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~   78 (111)
                      .++.+++++|.++.++........++.+ .+.+|.++.++  .|.++++|+.|++++|+++.+
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             cceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCcc
Confidence            4455555555555544433233333322 34555555554  255555666666666655543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.7e-08  Score=56.90  Aligned_cols=62  Identities=27%  Similarity=0.284  Sum_probs=27.5

Q ss_pred             hcCCCccEEecccccCCCCCC----CCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCCCCC
Q psy8464          38 SEFTNLKILSAINVGLTSLKG----FPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        38 ~~~~~l~~l~l~~~~~~~l~~----~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~l~   99 (111)
                      ..++.|+.+++++|.++.++.    +..+++|+.|++++|.+.++.+. ......++.+++++|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            344555555555555554431    22344555555555555542221 112223455555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.8e-07  Score=52.61  Aligned_cols=75  Identities=28%  Similarity=0.296  Sum_probs=58.4

Q ss_pred             CCccEEEcCCCCCCCh---hhhhhcCCCccEEecccccCCCCCC--CCCCCCCCEEEcCCCcCCCccc--------ccCC
Q psy8464          18 IQIKELNLDNCRSTNI---AALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISGGLN--------VLQS   84 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~~---~~~~~~~~~l~~l~l~~~~~~~l~~--~~~l~~L~~l~l~~n~~~~~~~--------~~~~   84 (111)
                      +.+++|++++|+|+.+   +..+..+++|+.+++++|.++.++.  +-....++.+++.+|++.....        .+..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            7899999999999984   4456789999999999999998772  2233468999999999975322        1447


Q ss_pred             CCCCcEEE
Q psy8464          85 SPKLAYLN   92 (111)
Q Consensus        85 ~~~L~~l~   92 (111)
                      +|+|+.|+
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            88888664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.2e-07  Score=57.57  Aligned_cols=82  Identities=23%  Similarity=0.313  Sum_probs=52.3

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCC-----CC-CCC-CCCCCCEEEcCCCcCCCc-----cc
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTS-----LK-GFP-ELPALTRLELSDNRISGG-----LN   80 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~-----l~-~~~-~l~~L~~l~l~~n~~~~~-----~~   80 (111)
                      +.++++++++|.++.     +...+..+++|+.|++++|.++.     +. .+. ....|+.|++++|.+++.     ..
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            567777888887764     23344667778888888777643     11 222 224677888888777642     12


Q ss_pred             ccCCCCCCcEEEcCCCCCC
Q psy8464          81 VLQSSPKLAYLNLCGNRIK   99 (111)
Q Consensus        81 ~~~~~~~L~~l~l~~n~l~   99 (111)
                      .+..++.|+++++++|.+.
T Consensus       107 ~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HTTSCTTCCEEECCSSBCH
T ss_pred             hhhccccccccccccccch
Confidence            2456777888888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.6e-06  Score=51.95  Aligned_cols=83  Identities=24%  Similarity=0.309  Sum_probs=63.2

Q ss_pred             CCccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCCC-----C-CCCCCCCCCEEEcCCCcCCCc-----ccccC-
Q psy8464          18 IQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSL-----K-GFPELPALTRLELSDNRISGG-----LNVLQ-   83 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~l~~L~~l~l~~n~~~~~-----~~~~~-   83 (111)
                      .+++.||++++++++  +...+..+++++++++.+|.++..     . .+..+++|+.|++++|.+.+.     ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            468899999999998  566678889999999999988742     2 345678899999999988531     11222 


Q ss_pred             CCCCCcEEEcCCCCCCC
Q psy8464          84 SSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        84 ~~~~L~~l~l~~n~l~~  100 (111)
                      ....|++|++++|.+++
T Consensus        82 ~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TTCCCCEEECTTSCCBG
T ss_pred             CCCCCCEEECCCCCccc
Confidence            33579999999998864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.2e-06  Score=51.25  Aligned_cols=79  Identities=25%  Similarity=0.285  Sum_probs=57.4

Q ss_pred             CCccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCC-cCCCc-ccc-cCCCCCCcE
Q psy8464          18 IQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDN-RISGG-LNV-LQSSPKLAY   90 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n-~~~~~-~~~-~~~~~~L~~   90 (111)
                      ..++.++++++.++.  +...+..+++|+.+.+.++.++...  .+..+++|++|+++++ .+++. ... ...++.|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            678899999988876  6666788889999999988875421  4556778899998874 45431 122 236788888


Q ss_pred             EEcCCC
Q psy8464          91 LNLCGN   96 (111)
Q Consensus        91 l~l~~n   96 (111)
                      ++++++
T Consensus       126 L~ls~c  131 (284)
T d2astb2         126 LNLSWC  131 (284)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            888875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=2.5e-05  Score=43.76  Aligned_cols=83  Identities=17%  Similarity=0.242  Sum_probs=53.0

Q ss_pred             CCccEEEcCCC-CCCC--hhh---hhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCcCCCc-----cc
Q psy8464          18 IQIKELNLDNC-RSTN--IAA---LTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNRISGG-----LN   80 (111)
Q Consensus        18 ~~l~~l~l~~n-~i~~--~~~---~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~~~~~-----~~   80 (111)
                      +.++.|+++++ .++.  +..   .+.....++.+++++|.+..-.      .+...+.++.|++++|.+...     ..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            67888888864 4655  222   2345567888888888776411      233446788888888877641     12


Q ss_pred             ccCCCCCCcEEEcCCCCCCC
Q psy8464          81 VLQSSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        81 ~~~~~~~L~~l~l~~n~l~~  100 (111)
                      .+...+.|++|++++|.+..
T Consensus        95 aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCC
T ss_pred             HHHhCCcCCEEECCCCcCCC
Confidence            35566778888888776543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.57  E-value=4.5e-05  Score=47.01  Aligned_cols=82  Identities=20%  Similarity=0.216  Sum_probs=42.7

Q ss_pred             CCccEEEcCCCCCCC------hhhhhhcCCCccEEecccccCCC-----CC-CCCCCCCCCEEEcCCCcCCCc-----cc
Q psy8464          18 IQIKELNLDNCRSTN------IAALTSEFTNLKILSAINVGLTS-----LK-GFPELPALTRLELSDNRISGG-----LN   80 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~------~~~~~~~~~~l~~l~l~~~~~~~-----l~-~~~~l~~L~~l~l~~n~~~~~-----~~   80 (111)
                      ..++.+++++|.+..      +...+...+.++.+++++|.++.     +. .+..++.|+.|++++|.+.+.     ..
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            456666666666654      11123445566666666666543     11 234455666666666666531     01


Q ss_pred             ccC--CCCCCcEEEcCCCCCC
Q psy8464          81 VLQ--SSPKLAYLNLCGNRIK   99 (111)
Q Consensus        81 ~~~--~~~~L~~l~l~~n~l~   99 (111)
                      .+.  ..+.+++|++++|.+.
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCB
T ss_pred             HhhhccCCCCCEEECCCCcCC
Confidence            111  2345666666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00013  Score=43.93  Aligned_cols=37  Identities=32%  Similarity=0.277  Sum_probs=15.5

Q ss_pred             CCCCCCCEEEcCCC-cCCCc-ccccCCCCCCcEEEcCCC
Q psy8464          60 PELPALTRLELSDN-RISGG-LNVLQSSPKLAYLNLCGN   96 (111)
Q Consensus        60 ~~l~~L~~l~l~~n-~~~~~-~~~~~~~~~L~~l~l~~n   96 (111)
                      ..+++|++|+++++ .+.+. +..++.++.|+.+++.++
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            33445555555542 23221 112334455555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.53  E-value=4.3e-05  Score=47.09  Aligned_cols=83  Identities=29%  Similarity=0.382  Sum_probs=61.9

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCCC------CC--CCCCCCCEEEcCCCcCCCc-----c
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSLK------GF--PELPALTRLELSDNRISGG-----L   79 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~------~~--~~l~~L~~l~l~~n~~~~~-----~   79 (111)
                      +.++.|++++|.+..     +...+..+++|+.+++++|.++...      .+  .....++.|++++|.+...     .
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~  294 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  294 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHH
Confidence            679999999999876     3344577889999999999987521      12  2336799999999998641     1


Q ss_pred             cccC-CCCCCcEEEcCCCCCCC
Q psy8464          80 NVLQ-SSPKLAYLNLCGNRIKD  100 (111)
Q Consensus        80 ~~~~-~~~~L~~l~l~~n~l~~  100 (111)
                      ..+. ..+.|+++++++|.+..
T Consensus       295 ~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         295 TVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHccCCCCCEEECCCCcCCC
Confidence            2232 46789999999999864

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.17  E-value=0.00026  Score=39.38  Aligned_cols=80  Identities=14%  Similarity=0.113  Sum_probs=59.1

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCcCCCcc-------
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNRISGGL-------   79 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~~~~~~-------   79 (111)
                      +.++.|++++|.+..     +...+...+.++.+++++|.+..-.      .+..-..|++|++.+|.+..+-       
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            679999999999986     3334456788999999999987621      4666788999999988765421       


Q ss_pred             -cccCCCCCCcEEEcCCCC
Q psy8464          80 -NVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        80 -~~~~~~~~L~~l~l~~n~   97 (111)
                       ..+...+.|+.++++.+.
T Consensus       124 ~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         124 MMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCCccEeeCcCCC
Confidence             123346788888886653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.15  E-value=0.0019  Score=35.56  Aligned_cols=76  Identities=25%  Similarity=0.263  Sum_probs=40.7

Q ss_pred             CCccEEEcCC-CCCCC--h---hhhhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCcCCCc-----cc
Q psy8464          18 IQIKELNLDN-CRSTN--I---AALTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNRISGG-----LN   80 (111)
Q Consensus        18 ~~l~~l~l~~-n~i~~--~---~~~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~~~~~-----~~   80 (111)
                      +.++.+++++ +.++.  +   -..+...++++.+++++|.++.-.      .+.....++.++++++.+...     ..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            5677777776 45654  2   222245566777777777665411      233345666677766665431     12


Q ss_pred             ccCCCCCCcEEEc
Q psy8464          81 VLQSSPKLAYLNL   93 (111)
Q Consensus        81 ~~~~~~~L~~l~l   93 (111)
                      .+...+.++.+++
T Consensus        97 ~l~~~~~L~~l~L  109 (166)
T d1io0a_          97 ALQSNTSLIELRI  109 (166)
T ss_dssp             GGGGCSSCCEEEC
T ss_pred             HHHhCccccEEee
Confidence            2334555655444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.66  E-value=0.0027  Score=34.96  Aligned_cols=80  Identities=15%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCC-----C-CCCCCCCCCEEEc--CCCcCCCc-----c
Q psy8464          18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSL-----K-GFPELPALTRLEL--SDNRISGG-----L   79 (111)
Q Consensus        18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~l~~L~~l~l--~~n~~~~~-----~   79 (111)
                      +.++.|++++|.++.     +-..+.....++.+++.++.+..-     . .+...+.++.+++  ++|.+.+.     .
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La  125 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  125 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHH
Confidence            789999999999987     333446678899999999887651     1 4555677887666  45666531     1


Q ss_pred             cccCCCCCCcEEEcCCCC
Q psy8464          80 NVLQSSPKLAYLNLCGNR   97 (111)
Q Consensus        80 ~~~~~~~~L~~l~l~~n~   97 (111)
                      +.+...+.|+++++..+.
T Consensus       126 ~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCCCcCEEeCcCCC
Confidence            224467889999987654