Psyllid ID: psy8488

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
MSIGDTSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKDD
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEccccEEEEEcHHHHHHHHHHHcccccccHHHHHHHHHHHHccccEEEEcccEEEEEEcccHHHHHcccHHHHHHccccccccccc
ccccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHccHHHccccEEcccccEEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEccccccEEEEcccHHHHHcccHHHHHHHcccccccccc
msigdtsyyyssfsdskppyvqpasmlagysgsgpcftgsgpIQLWQFLLELLTDKTCQAFISwtgdgwefkltdpdevarrwgirknkpkmnyeKLSRGLRyyydkniihktagkRYVYRFVCDLqtllgyspeeLHAMvdlkpdkkdd
MSIGDTSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISwtgdgwefkltdpdevarrwgirknkpkmnyeklsrGLRYYYDKNIIhktagkryVYRFVCDLQTllgyspeelhamvdlkpdkkdd
MSIGDTsyyyssfsdsKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKDD
*************************MLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEEL*************
********************************************LWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSP****************
MSIGDTSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKDD
********************************SGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVD********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSIGDTSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query150 2.2.26 [Sep-21-2011]
P13474441 Transforming protein p54/ yes N/A 0.793 0.269 0.857 3e-60
P41156441 Protein C-ets-1 OS=Rattus yes N/A 0.793 0.269 0.857 4e-60
P14921441 Protein C-ets-1 OS=Homo s yes N/A 0.793 0.269 0.857 4e-60
P27577440 Protein C-ets-1 OS=Mus mu yes N/A 0.793 0.270 0.857 4e-60
P15062485 Transforming protein p68/ no N/A 0.813 0.251 0.837 6e-60
P18755438 Protein c-ets-1-A OS=Xeno N/A N/A 0.793 0.271 0.857 7e-60
P18756268 Protein c-ets-1-B (Fragme N/A N/A 0.793 0.444 0.857 9e-60
P10157479 Protein C-ets-2 OS=Gallus no N/A 0.813 0.254 0.813 7e-59
P19102472 Protein c-ets-2-A OS=Xeno N/A N/A 0.793 0.252 0.833 1e-58
P15036469 Protein C-ets-2 OS=Homo s no N/A 0.813 0.260 0.798 2e-58
>sp|P13474|ETS1A_CHICK Transforming protein p54/c-ets-1 OS=Gallus gallus GN=ETS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  229 bits (585), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 116/126 (92%), Gaps = 7/126 (5%)

Query: 21  VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 80
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 320 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 372

Query: 81  RRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAM 140
           RRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM
Sbjct: 373 RRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAM 432

Query: 141 VDLKPD 146
           +D+KPD
Sbjct: 433 LDVKPD 438
This protein is the normal cellular product of chicken ETS. In the E26 virus, ETS is responsible for erythroblast transformation.
Gallus gallus (taxid: 9031)
>sp|P41156|ETS1_RAT Protein C-ets-1 OS=Rattus norvegicus GN=Ets1 PE=2 SV=1 Back     alignment and function description
>sp|P14921|ETS1_HUMAN Protein C-ets-1 OS=Homo sapiens GN=ETS1 PE=1 SV=1 Back     alignment and function description
>sp|P27577|ETS1_MOUSE Protein C-ets-1 OS=Mus musculus GN=Ets1 PE=1 SV=2 Back     alignment and function description
>sp|P15062|ETS1B_CHICK Transforming protein p68/c-ets-1 OS=Gallus gallus GN=ETS1 PE=2 SV=1 Back     alignment and function description
>sp|P18755|ETS1A_XENLA Protein c-ets-1-A OS=Xenopus laevis GN=ets1-a PE=2 SV=1 Back     alignment and function description
>sp|P18756|ETS1B_XENLA Protein c-ets-1-B (Fragment) OS=Xenopus laevis GN=ets1-b PE=2 SV=1 Back     alignment and function description
>sp|P10157|ETS2_CHICK Protein C-ets-2 OS=Gallus gallus GN=ETS2 PE=2 SV=1 Back     alignment and function description
>sp|P19102|ETS2A_XENLA Protein c-ets-2-A OS=Xenopus laevis GN=ets2-a PE=2 SV=2 Back     alignment and function description
>sp|P15036|ETS2_HUMAN Protein C-ets-2 OS=Homo sapiens GN=ETS2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
242017233 262 protein C-ets-1-B, putative [Pediculus h 0.873 0.5 0.909 2e-67
307212300 441 Transforming protein p54/c-ets-1 [Harpeg 0.9 0.306 0.868 2e-67
328785918 687 PREDICTED: hypothetical protein LOC41291 0.873 0.190 0.893 6e-67
383862764 683 PREDICTED: uncharacterized protein LOC10 0.873 0.191 0.886 9e-67
380029786 593 PREDICTED: uncharacterized protein LOC10 0.873 0.220 0.893 2e-66
350400995 681 PREDICTED: hypothetical protein LOC10074 0.9 0.198 0.846 3e-66
340719636 680 PREDICTED: hypothetical protein LOC10064 0.9 0.198 0.846 4e-66
340719638 593 PREDICTED: hypothetical protein LOC10064 0.9 0.227 0.846 9e-66
332019181 454 Transforming protein p54/c-ets-1 [Acromy 0.9 0.297 0.855 5e-65
307178865 457 Transforming protein p54/c-ets-1 [Campon 0.893 0.293 0.854 6e-65
>gi|242017233|ref|XP_002429096.1| protein C-ets-1-B, putative [Pediculus humanus corporis] gi|212513960|gb|EEB16358.1| protein C-ets-1-B, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/132 (90%), Positives = 128/132 (96%), Gaps = 1/132 (0%)

Query: 19  PYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDE 78
           P++Q A M+AGYSG GPCFTGSGPIQLWQFLLELLTDKTCQ FISWTGDGWEFKLTDPDE
Sbjct: 131 PFLQSA-MIAGYSGGGPCFTGSGPIQLWQFLLELLTDKTCQGFISWTGDGWEFKLTDPDE 189

Query: 79  VARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELH 138
           VARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYR+VCDLQ+LLG+SPEELH
Sbjct: 190 VARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRYVCDLQSLLGFSPEELH 249

Query: 139 AMVDLKPDKKDD 150
           AMVDLKP+KK+D
Sbjct: 250 AMVDLKPEKKED 261

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307212300|gb|EFN88108.1| Transforming protein p54/c-ets-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328785918|ref|XP_003250677.1| PREDICTED: hypothetical protein LOC412916 [Apis mellifera] Back     alignment and taxonomy information
>gi|383862764|ref|XP_003706853.1| PREDICTED: uncharacterized protein LOC100878829 [Megachile rotundata] Back     alignment and taxonomy information
>gi|380029786|ref|XP_003698546.1| PREDICTED: uncharacterized protein LOC100864450 [Apis florea] Back     alignment and taxonomy information
>gi|350400995|ref|XP_003486023.1| PREDICTED: hypothetical protein LOC100745810 isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340719636|ref|XP_003398254.1| PREDICTED: hypothetical protein LOC100644371 isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|340719638|ref|XP_003398255.1| PREDICTED: hypothetical protein LOC100644371 isoform 2 [Bombus terrestris] gi|350400992|ref|XP_003486022.1| PREDICTED: hypothetical protein LOC100745810 isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|332019181|gb|EGI59691.1| Transforming protein p54/c-ets-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307178865|gb|EFN67410.1| Transforming protein p54/c-ets-1 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
FB|FBgn0003118718 pnt "pointed" [Drosophila mela 0.826 0.172 0.857 2.2e-57
UNIPROTKB|F1P3R9485 TNIP1 "Uncharacterized protein 0.806 0.249 0.846 1.6e-56
UNIPROTKB|G9LQW2441 TNIP1 "ETS-1A" [Gallus gallus 0.806 0.274 0.846 1.6e-56
UNIPROTKB|P13474441 ETS1 "Transforming protein p54 0.806 0.274 0.846 1.6e-56
UNIPROTKB|P15062485 ETS1 "Transforming protein p68 0.806 0.249 0.846 1.6e-56
UNIPROTKB|A5PJG9441 ETS1 "Uncharacterized protein" 0.806 0.274 0.846 1.6e-56
UNIPROTKB|F1PRM7485 ETS1 "Uncharacterized protein" 0.806 0.249 0.846 1.6e-56
UNIPROTKB|J9NXR6441 ETS1 "Uncharacterized protein" 0.806 0.274 0.846 1.6e-56
UNIPROTKB|P14921441 ETS1 "Protein C-ets-1" [Homo s 0.806 0.274 0.846 1.6e-56
UNIPROTKB|F1S6G9415 ETS1 "Uncharacterized protein" 0.806 0.291 0.846 1.6e-56
FB|FBgn0003118 pnt "pointed" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 108/126 (85%), Positives = 115/126 (91%)

Query:    26 MLAGYSGSG--PCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRW 83
             +L GY+  G  PCFTGSGPIQLWQFLLELL DKTCQ+FISWTGDGWEFKLTDPDEVARRW
Sbjct:   591 LLGGYTTQGGVPCFTGSGPIQLWQFLLELLLDKTCQSFISWTGDGWEFKLTDPDEVARRW 650

Query:    84 GIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDL 143
             GIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ L+G++PEEL A  DL
Sbjct:   651 GIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQNLVGHTPEELVAKYDL 710

Query:   144 KPDKKD 149
             K +KKD
Sbjct:   711 KIEKKD 716
GO:0008293 "torso signaling pathway" evidence=IGI
GO:0007362 "terminal region determination" evidence=IGI
GO:0005634 "nucleus" evidence=ISS;NAS;IDA
GO:0007422 "peripheral nervous system development" evidence=TAS
GO:0061331 "epithelial cell proliferation involved in Malpighian tubule morphogenesis" evidence=IMP
GO:0043066 "negative regulation of apoptotic process" evidence=IGI
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0007424 "open tracheal system development" evidence=NAS
GO:0030707 "ovarian follicle cell development" evidence=TAS
GO:0007265 "Ras protein signal transduction" evidence=TAS
GO:0045467 "R7 cell development" evidence=TAS
GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA;IMP
GO:0007429 "secondary branching, open tracheal system" evidence=IMP;TAS
GO:0007507 "heart development" evidence=NAS;TAS
GO:0007157 "heterophilic cell-cell adhesion" evidence=NAS
GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA
GO:0061320 "pericardial nephrocyte differentiation" evidence=IMP
GO:0009997 "negative regulation of cardioblast cell fate specification" evidence=IMP
GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA
GO:0070491 "repressing transcription factor binding" evidence=IPI
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0045610 "regulation of hemocyte differentiation" evidence=IMP
GO:0035225 "determination of genital disc primordium" evidence=IMP
GO:0007428 "primary branching, open tracheal system" evidence=IMP
GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP
GO:0048747 "muscle fiber development" evidence=IMP
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0007455 "eye-antennal disc morphogenesis" evidence=IMP
GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP
GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI
GO:0007464 "R3/R4 cell fate commitment" evidence=IMP
GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP
GO:0008284 "positive regulation of cell proliferation" evidence=IMP
GO:0060439 "trachea morphogenesis" evidence=IMP
GO:0050767 "regulation of neurogenesis" evidence=IMP
UNIPROTKB|F1P3R9 TNIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G9LQW2 TNIP1 "ETS-1A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P13474 ETS1 "Transforming protein p54/c-ets-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P15062 ETS1 "Transforming protein p68/c-ets-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A5PJG9 ETS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRM7 ETS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NXR6 ETS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P14921 ETS1 "Protein C-ets-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S6G9 ETS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P41156ETS1_RATNo assigned EC number0.85710.79330.2698yesN/A
P29773ETS2_LYTVANo assigned EC number0.89090.73331.0N/AN/A
P14921ETS1_HUMANNo assigned EC number0.85710.79330.2698yesN/A
P51022PNT1_DROMENo assigned EC number0.88980.78660.1894yesN/A
P27577ETS1_MOUSENo assigned EC number0.85710.79330.2704yesN/A
P13474ETS1A_CHICKNo assigned EC number0.85710.79330.2698yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
pfam0017885 pfam00178, Ets, Ets-domain 2e-52
smart0041387 smart00413, ETS, erythroblast transformation speci 3e-49
>gnl|CDD|143944 pfam00178, Ets, Ets-domain Back     alignment and domain information 
 Score =  160 bits (407), Expect = 2e-52
 Identities = 61/85 (71%), Positives = 66/85 (77%), Gaps = 1/85 (1%)

Query: 42  PIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 100
            IQLWQFLLELLTD+  + FI WTG D  EFKL DP+EVAR WGIRKNKP MNY+KLSR 
Sbjct: 1   QIQLWQFLLELLTDQDNRDFIRWTGRDKGEFKLVDPEEVARLWGIRKNKPNMNYDKLSRA 60

Query: 101 LRYYYDKNIIHKTAGKRYVYRFVCD 125
           LRYYY K II K  GKR VY+FV D
Sbjct: 61  LRYYYKKGIIRKVKGKRLVYKFVSD 85

Length = 85
>gnl|CDD|197710 smart00413, ETS, erythroblast transformation specific domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 150
KOG3806|consensus177 100.0
smart0041387 ETS erythroblast transformation specific domain. v 100.0
PF0017885 Ets: Ets-domain; InterPro: IPR000418 Transcription 100.0
KOG3805|consensus361 99.97
KOG3804|consensus390 99.95
KOG3804|consensus 390 98.85
PF00447103 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0 97.16
smart00415105 HSF heat shock factor. 96.88
COG5169 282 HSF1 Heat shock transcription factor [Transcriptio 94.67
KOG0627|consensus 304 87.87
cd04777107 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding dom 80.97
>KOG3806|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.6e-42  Score=272.68  Aligned_cols=104  Identities=63%  Similarity=1.107  Sum_probs=95.3

Q ss_pred             CCcCCCCceehHHHHHHhhCCCCCCCceEEecC-CceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEec
Q psy8488          35 PCFTGSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKT  113 (150)
Q Consensus        35 ~~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv  113 (150)
                      ....++|+++|||||++||+|+++++||+||++ ++||+++||++|||+||.+||||+||||||||||||||+++||+||
T Consensus        61 ~s~~~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyyY~kni~~Kv  140 (177)
T KOG3806|consen   61 ESTSGSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYYYDKNILKKV  140 (177)
T ss_pred             ccCCCCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCceeec
Confidence            345788999999999999999999999999996 6799999999999999999999999999999999999999999999


Q ss_pred             ccceeEEEeccchhhhhcCCHHHHHH
Q psy8488         114 AGKRYVYRFVCDLQTLLGYSPEELHA  139 (150)
Q Consensus       114 ~g~rl~Y~F~~ep~~~~~mt~eel~~  139 (150)
                      +|+|++|+|++++.+. .+.++....
T Consensus       141 ~Gkr~~YkF~~~~~~~-~~~~~~~~~  165 (177)
T KOG3806|consen  141 PGKRFVYKFVFDPLNL-ALYPHTLKN  165 (177)
T ss_pred             CCceEEEEEecCHHHh-ccCcccccc
Confidence            9999999999999988 555544433

>smart00413 ETS erythroblast transformation specific domain Back     alignment and domain information
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription [] Back     alignment and domain information
>KOG3805|consensus Back     alignment and domain information
>KOG3804|consensus Back     alignment and domain information
>KOG3804|consensus Back     alignment and domain information
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs [] Back     alignment and domain information
>smart00415 HSF heat shock factor Back     alignment and domain information
>COG5169 HSF1 Heat shock transcription factor [Transcription] Back     alignment and domain information
>KOG0627|consensus Back     alignment and domain information
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
3mfk_A162 Ets1 Complex With Stromelysin-1 Promoter Dna Length 2e-60
1gvj_A146 Ets-1 Dna Binding And Autoinhibitory Domains Length 3e-60
3ri4_A163 Ets1 Cooperative Binding To Widely Separated Sites 3e-60
1mdm_B161 Inhibited Fragment Of Ets-1 And Paired Domain Of Pa 3e-60
1md0_A141 Crystal Structure Of An Inhibited Fragment Of Ets-1 3e-60
1r36_A140 Nmr-Based Structure Of Autoinhibited Murine Ets-1 D 2e-59
2nny_A171 Crystal Structure Of The Ets1 Dimer Dna Complex. Le 8e-59
1k78_B110 Pax5(1-149)+ets-1(331-440)+dna Length = 110 2e-57
2stt_A96 Solution Nmr Structure Of The Human Ets1DNA COMPLEX 6e-47
1awc_A110 Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1 1e-34
4avp_A106 Crystal Structure Of The Dna-Binding Domain Of Huma 2e-32
2ypr_A102 Crystal Structure Of The Dna Binding Ets Domain Of 6e-31
1fli_A98 Dna-Binding Domain Of Fli-1 Length = 98 3e-30
1dux_C94 Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM 3e-25
1hbx_G157 Ternary Complex Of Sap-1 And Srf With Specific Sre 6e-19
1bc7_C93 Serum Response Factor Accessory Protein 1a (Sap-1)D 9e-19
1yo5_C97 Analysis Of The 2.0a Crystal Structure Of The Prote 6e-17
2dao_A118 Solution Structure Of Ets Domain Transcriptional Fa 1e-15
2lf7_A106 Intramolecular Regulation Of The Ets Domain Within 3e-15
2lf8_A128 Intramolecular Regulation Of The Ets Domain Within 4e-15
3jtg_A103 Crystal Structure Of Mouse Elf3 C-Terminal Dna-Bind 8e-10
1wwx_A107 Solution Structure Of The Ets-Domain Of The Ets Dom 4e-08
1pue_E89 Pu.1 Ets Domain-Dna Complex Length = 89 1e-06
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna Length = 162 Back     alignment and structure 
Iteration: 1

 Score =  227 bits (578), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 116/126 (92%), Gaps = 7/126 (5%)
Query: 21  VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 80
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 41  VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 93
Query: 81  RRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAM 140
           RRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM
Sbjct: 94  RRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAM 153
Query: 141 VDLKPD 146
           +D+KPD
Sbjct: 154 LDVKPD 159
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains Length = 146 Back     alignment and structure
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On Promoter Dna Length = 163 Back     alignment and structure
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5 Bound To Dna Length = 161 Back     alignment and structure
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1 Length = 141 Back     alignment and structure
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1 Deltan301 Length = 140 Back     alignment and structure
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex. Length = 171 Back     alignment and structure
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna Length = 110 Back     alignment and structure
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25 Structures Length = 96 Back     alignment and structure
>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 110 Back     alignment and structure
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1. Length = 106 Back     alignment and structure
>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human Protein Fev Length = 102 Back     alignment and structure
>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1 Length = 98 Back     alignment and structure
>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA- Binding Surface Affect Dna-Recognition Length = 94 Back     alignment and structure
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna Length = 157 Back     alignment and structure
>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA Complex Length = 93 Back     alignment and structure
>pdb|1YO5|C Chain C, Analysis Of The 2.0a Crystal Structure Of The Protein-Dna Complex Of Human Pdef Ets Domain Bound To The Prostate Specific Antigen Regulatory Site Length = 97 Back     alignment and structure
>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor Etv6 Protein Length = 118 Back     alignment and structure
>pdb|2LF7|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6 Sequence R335 To Q436 Length = 106 Back     alignment and structure
>pdb|2LF8|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6 Sequence R335 To R458 Length = 128 Back     alignment and structure
>pdb|3JTG|A Chain A, Crystal Structure Of Mouse Elf3 C-Terminal Dna-Binding Domai Complex With Type Ii Tgf-Beta Receptor Promoter Dna Length = 103 Back     alignment and structure
>pdb|1WWX|A Chain A, Solution Structure Of The Ets-Domain Of The Ets Domain Transcription Factor Length = 107 Back     alignment and structure
>pdb|1PUE|E Chain E, Pu.1 Ets Domain-Dna Complex Length = 89 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
1gvj_A146 C-ETS-1 protein, P54; transcription, autoinhibitio 1e-51
2nny_A171 C-ETS-1 protein, P54; protein-DNA complex, transcr 3e-51
1awc_A110 Protein (GA binding protein alpha); complex (trans 6e-48
2lf8_A128 Transcription factor ETV6; auto-inhibition; NMR {M 1e-44
2dao_A118 Transcription factor ETV6; ETS domain, structural 4e-44
4avp_A106 ETS translocation variant 1; transcription, transc 5e-43
1hbx_G157 ETS-domain protein ELK-4; gene regulation, transcr 2e-42
1bc8_C93 SAP-1, protein (SAP-1 ETS domain); DNA-binding dom 2e-41
1fli_A98 FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: 3e-41
1yo5_C97 SAM pointed domain containing ETS transcription fa 5e-39
3jtg_A103 ETS-related transcription factor ELF-3; ELF3, prot 2e-38
1wwx_A107 E74-like factor 5 ESE-2B; DNA binding, transcripti 2e-38
1pue_E89 Protein (transcription factor PU.1 (TF PU.1)); com 2e-34
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A* Length = 146 Back     alignment and structure
 Score =  160 bits (405), Expect = 1e-51
 Identities = 104/139 (74%), Positives = 117/139 (84%), Gaps = 5/139 (3%)

Query: 16  SKPPYVQPASMLAGYS-----GSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWE 70
           +   YV+  + L          +   +TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWE
Sbjct: 8   TFKDYVRDRADLNKDKPVIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWE 67

Query: 71  FKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLL 130
           FKL+DPDEVARRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LL
Sbjct: 68  FKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127

Query: 131 GYSPEELHAMVDLKPDKKD 149
           GY+PEELHAM+D+KPD  +
Sbjct: 128 GYTPEELHAMLDVKPDADE 146
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B Length = 171 Back     alignment and structure
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21 Length = 110 Back     alignment and structure
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus} Length = 128 Back     alignment and structure
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118 Back     alignment and structure
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} Length = 106 Back     alignment and structure
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21 Length = 157 Back     alignment and structure
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C* Length = 93 Back     alignment and structure
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21 Length = 98 Back     alignment and structure
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 Length = 97 Back     alignment and structure
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} Length = 103 Back     alignment and structure
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21 Length = 107 Back     alignment and structure
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21 Length = 89 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
1gvj_A146 C-ETS-1 protein, P54; transcription, autoinhibitio 100.0
2nny_A171 C-ETS-1 protein, P54; protein-DNA complex, transcr 100.0
4avp_A106 ETS translocation variant 1; transcription, transc 100.0
1awc_A110 Protein (GA binding protein alpha); complex (trans 100.0
1bc8_C93 SAP-1, protein (SAP-1 ETS domain); DNA-binding dom 100.0
2dao_A118 Transcription factor ETV6; ETS domain, structural 100.0
2lf8_A128 Transcription factor ETV6; auto-inhibition; NMR {M 100.0
1fli_A98 FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: 100.0
2ypr_A102 Protein FEV; transcription; 2.64A {Homo sapiens} P 100.0
1hbx_G157 ETS-domain protein ELK-4; gene regulation, transcr 100.0
1yo5_C97 SAM pointed domain containing ETS transcription fa 100.0
1wwx_A107 E74-like factor 5 ESE-2B; DNA binding, transcripti 100.0
3jtg_A103 ETS-related transcription factor ELF-3; ELF3, prot 100.0
1pue_E89 Protein (transcription factor PU.1 (TF PU.1)); com 100.0
2ldu_A125 Heat shock factor protein 1; structural genomics, 96.5
1hks_A106 Heat-shock transcription factor; transcription reg 96.48
3hts_B102 Heat shock transcription factor; transcription reg 95.93
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A* Back     alignment and structure
Probab=100.00  E-value=6.8e-49  Score=303.34  Aligned_cols=126  Identities=87%  Similarity=1.482  Sum_probs=116.3

Q ss_pred             CCCCCCchhhhcCCCCCCCCcCCCCceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHH
Q psy8488          17 KPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEK   96 (150)
Q Consensus        17 ~~~p~~p~~~~~~~~~~~~~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~Ydk   96 (150)
                      ...|.+|.+.+++.       .++|+++||+||++||.|+++++||+|||+++||+++||++||+|||.+||+++|||||
T Consensus        21 ~~~p~~p~~~~~~~-------~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeK   93 (146)
T 1gvj_A           21 KDKPVIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEK   93 (146)
T ss_dssp             CSCCSSCHHHHHHH-------HTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHH
T ss_pred             CCCCCCCcccccCC-------CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHH
Confidence            46788999888775       56789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcceeEecccceeEEEeccchhhhhcCCHHHHHHhcccCCCCCC
Q psy8488          97 LSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKD  149 (150)
Q Consensus        97 lsRsLR~yY~kgIl~Kv~g~rl~Y~F~~ep~~~~~mt~eel~~~i~~~~~~~~  149 (150)
                      |||||||||++|||.||+|+|++|+|++++..++||++|||+.+++++|+.+|
T Consensus        94 LSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~~~l~g~~~~e~~~~~~~~p~~~~  146 (146)
T 1gvj_A           94 LSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPDADE  146 (146)
T ss_dssp             HHHHHHHHHHTTSEEECTTSSSEEEECSCHHHHHSCCHHHHHHHTTCC-----
T ss_pred             HHHHHHHHHhcCcEEecCCCeEEEEeccchHhhcCCCHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999865
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B Back     alignment and structure
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A Back     alignment and structure
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C* Back     alignment and structure
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus} Back     alignment and structure
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A Back     alignment and structure
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 150
d1gvja_142 a.4.5.21 (A:) ETS-1 transcription factor, residues 2e-61
d1awca_110 a.4.5.21 (A:) GA binding protein (GABP) alpha {Mou 7e-55
d1flia_98 a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 4e-46
d1duxc_86 a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 4e-45
d1hbxg_155 a.4.5.21 (G:) Serum response factor accessory prot 1e-44
d1wwxa194 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human 2e-41
d1yo5c188 a.4.5.21 (C:247-334) Sam pointed domain containing 3e-41
d1puee_88 a.4.5.21 (E:) Transcription factor PU.1, residues 3e-39
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]} Length = 142 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  183 bits (466), Expect = 2e-61
 Identities = 108/135 (80%), Positives = 118/135 (87%), Gaps = 9/135 (6%)

Query: 11  SSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWE 70
           +  +  KP    PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWE
Sbjct: 17  ADLNKDKPVI--PAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWE 67

Query: 71  FKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLL 130
           FKL+DPDEVARRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LL
Sbjct: 68  FKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127

Query: 131 GYSPEELHAMVDLKP 145
           GY+PEELHAM+D+KP
Sbjct: 128 GYTPEELHAMLDVKP 142
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 Back     information, alignment and structure
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 86 Back     information, alignment and structure
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
d1gvja_142 ETS-1 transcription factor, residues 331-440 {Huma 100.0
d1awca_110 GA binding protein (GABP) alpha {Mouse (Mus muscul 100.0
d1duxc_86 Elk-1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1flia_98 Fli-1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1hbxg_155 Serum response factor accessory protein 1a, SAP-1 100.0
d1yo5c188 Sam pointed domain containing ets transcription SP 100.0
d1wwxa194 E74-like factor 5 ese-2b {Human (Homo sapiens) [Ta 100.0
d1puee_88 Transcription factor PU.1, residues 171-259 {Mouse 100.0
d2htsa_92 Heat-shock transcription factor {Milk yeast (Kluyv 97.03
d1hksa_106 Heat-shock transcription factor {Drosophila melano 96.99
d2irfg_109 Interferon regulatory factor-2, IRF-2 {Mouse (Mus 83.75
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-48  Score=293.88  Aligned_cols=122  Identities=89%  Similarity=1.510  Sum_probs=113.7

Q ss_pred             CCCCCCchhhhcCCCCCCCCcCCCCceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHH
Q psy8488          17 KPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEK   96 (150)
Q Consensus        17 ~~~p~~p~~~~~~~~~~~~~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~Ydk   96 (150)
                      ...|..|.....|.       .|+|+++||+||++||.|+++.+||+|||+++||+++|+++||+|||.+||+++|||||
T Consensus        21 ~~~p~~p~~~~~~~-------~~~g~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeK   93 (142)
T d1gvja_          21 KDKPVIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEK   93 (142)
T ss_dssp             CSCCSSCHHHHHHH-------HTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHH
T ss_pred             CCCCCCCcccccCC-------CCCCeeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHH
Confidence            44556677666665       57799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcceeEecccceeEEEeccchhhhhcCCHHHHHHhcccCC
Q psy8488          97 LSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKP  145 (150)
Q Consensus        97 lsRsLR~yY~kgIl~Kv~g~rl~Y~F~~ep~~~~~mt~eel~~~i~~~~  145 (150)
                      |||||||||++|||+||.|+|++|+|++++..+++++++|++.+++++|
T Consensus        94 mSRALRyYY~k~il~Kv~g~rl~YkF~~~~~~l~~~~p~~~~~~~~~~P  142 (142)
T d1gvja_          94 LSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKP  142 (142)
T ss_dssp             HHHHHHHHHHTTSEEECTTSSSEEEECSCHHHHHSCCHHHHHHHTTCC-
T ss_pred             HhHHHHHHhhcceEEecCCcEEEEecCCCHHHHhccChhhhhhhcCCCC
Confidence            9999999999999999999999999999999999999999999999987
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2irfg_ a.4.5.23 (G:) Interferon regulatory factor-2, IRF-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure