Psyllid ID: psy8497
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2355 | 2.2.26 [Sep-21-2011] | |||||||
| P0C218 | 761 | Probable ATP-dependent RN | yes | N/A | 0.154 | 0.478 | 0.434 | 1e-82 | |
| Q9JJY4 | 825 | Probable ATP-dependent RN | yes | N/A | 0.153 | 0.438 | 0.458 | 3e-82 | |
| Q9UHI6 | 824 | Probable ATP-dependent RN | yes | N/A | 0.150 | 0.429 | 0.467 | 3e-81 | |
| Q54ZI9 | 849 | Probable ATP-dependent RN | yes | N/A | 0.154 | 0.427 | 0.346 | 6e-63 | |
| Q7ZVA6 | 406 | Eukaryotic initiation fac | no | N/A | 0.146 | 0.849 | 0.345 | 5e-56 | |
| P0CQ72 | 396 | ATP-dependent RNA helicas | yes | N/A | 0.142 | 0.845 | 0.361 | 1e-55 | |
| P0CQ73 | 396 | ATP-dependent RNA helicas | N/A | N/A | 0.142 | 0.845 | 0.361 | 1e-55 | |
| B5DG42 | 406 | Eukaryotic initiation fac | N/A | N/A | 0.146 | 0.849 | 0.345 | 1e-55 | |
| Q5U526 | 415 | Eukaryotic initiation fac | N/A | N/A | 0.146 | 0.831 | 0.345 | 1e-55 | |
| A6QSQ0 | 450 | ATP-dependent RNA helicas | N/A | N/A | 0.170 | 0.891 | 0.325 | 1e-55 |
| >sp|P0C218|DDX20_DANRE Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio GN=ddx20 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/373 (43%), Positives = 237/373 (63%), Gaps = 9/373 (2%)
Query: 2 AHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDA 61
AH++Q RT DVL + V F + +L+ KP+ +GL +GF + SPIQ+ A P G D
Sbjct: 8 AHELQSRTRTDDVLISGGVEF-SSLLLSKPVLEGLSASGFQRPSPIQLKAIPLGRCGLDL 66
Query: 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121
IVQ+KSGTGK+ VF AL+ LI L Q ++LAPTREIAVQI VV ++G+ ++ L
Sbjct: 67 IVQAKSGTGKTCVFTTIALDSLI-LENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLE 125
Query: 122 VDYFIGGTQVERPKRPVQ---IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI---- 174
FIGG + + K+ ++ I +GSPGRIKQ+I++ L + S+RLF++DEADKL+
Sbjct: 126 CHVFIGGRPISQDKQHLKKCHIAIGSPGRIKQLIEMGALMVSSIRLFVLDEADKLLEDDS 185
Query: 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQ 234
++ F E I WIYS LP KQML +SATY L +YM +P +R LLG+KQ
Sbjct: 186 SSSFQEQINWIYSSLPANKQMLALSATYPESLAQQLSRYMREPTFVRLNPTDPGLLGLKQ 245
Query: 235 LVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++P P + ++ + L++L S+ PFNQ ++FSN R + + + L++ A
Sbjct: 246 YYKIVPSHSLPHKVFEEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVC 305
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG Q RL ++ K+ + R+L++TDL +RGIDA V+LVINL++P D TY+HR+G
Sbjct: 306 ISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIG 365
Query: 355 RAGRYGTRGLVIT 367
RAGR+GT G+ +T
Sbjct: 366 RAGRFGTLGVAVT 378
|
The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. It may also play a role in the metabolism of snoRNPs. Danio rerio (taxid: 7955) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q9JJY4|DDX20_MOUSE Probable ATP-dependent RNA helicase DDX20 OS=Mus musculus GN=Ddx20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 171/373 (45%), Positives = 233/373 (62%), Gaps = 11/373 (2%)
Query: 2 AHDIQKC-ARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHDI RT DV+ FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 44 AHDIGGPRTRTGDVVLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLD 102
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ LI L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 103 LIVQAKSGTGKTCVFSTIALDSLI-LENYSTQILILAPTREIAVQIHSVITAIGIKMEGL 161
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 162 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 221
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L +YM DP +R + L+G+KQ
Sbjct: 222 SFQEQINWIYSSLPASKQMLAVSATYPEVLANALTRYMRDPTFVRLNPSDPSLIGLKQYY 281
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F E
Sbjct: 282 QVVN--SYPLAHKIFEEKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTEC 339
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 340 ISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 399
Query: 355 RAGRYGTRGLVIT 367
RAGR+GT GL +T
Sbjct: 400 RAGRFGTLGLTVT 412
|
The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. It may also play a role in the metabolism of snoRNPs. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9UHI6|DDX20_HUMAN Probable ATP-dependent RNA helicase DDX20 OS=Homo sapiens GN=DDX20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/364 (46%), Positives = 229/364 (62%), Gaps = 10/364 (2%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
RT DVL FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D IVQ+KSGT
Sbjct: 52 RTGDVLLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGT 110
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ VF AL+ L+ L Q +ILAPTREIAVQI V+ ++G ++ L FIGGT
Sbjct: 111 GKTCVFSTIALDSLV-LENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGT 169
Query: 130 QVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWI 185
+ + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G F E I WI
Sbjct: 170 PLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWI 229
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
YS LP KQML VSATY L KYM DP +R + L+G+KQ ++ P
Sbjct: 230 YSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVV--NSYP 287
Query: 246 SLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303
V EEK L +L S+ PFNQ ++FSN R + + + L++ F AE +SG +Q
Sbjct: 288 LAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQ 347
Query: 304 RLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG 363
RL ++ K R+L++TDL +RGIDA V+LV+NL++P D TY+HR+GRAGR+GT G
Sbjct: 348 RLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLG 407
Query: 364 LVIT 367
L +T
Sbjct: 408 LTVT 411
|
The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. It may also play a role in the metabolism of snoRNPs. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q54ZI9|DDX20_DICDI Probable ATP-dependent RNA helicase ddx20 OS=Dictyostelium discoideum GN=ddx20 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 150/433 (34%), Positives = 234/433 (54%), Gaps = 70/433 (16%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
RT D+ ++ F +++L++K + +GL++ G+ + SPIQ+ A P ++G D I Q+KSGT
Sbjct: 45 RTNDIEIEDNITF-SELLLQKEVLKGLEDGGYQRPSPIQLKAIPLGISGVDLIAQAKSGT 103
Query: 70 GKSIVFVVAAL--------------------------NKLIKL-----------PVQQPQ 92
GK+IVF V AL +L+++ +++P
Sbjct: 104 GKTIVFGVIALECVLRESKLLRQKQELNKTQLTNQTNKQLLEMDDDTYVETMVGIIRKPL 163
Query: 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP--------------- 137
+I+APTREIAVQI DV++S+ + K + + FIGG K
Sbjct: 164 VLIIAPTREIAVQIKDVIKSISKYCKRIKCEVFIGGLNSNNNKDENNNNILNNEDVNRLN 223
Query: 138 -VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK--- 193
QI+VG+PG+IK +I+ +L D++++ IMDEADKL++ F + I WIYS +
Sbjct: 224 GTQIIVGTPGKIKSLIENLHLRTDTLKMVIMDEADKLLDASFSKTINWIYSAIGNGNSNK 283
Query: 194 ---------QMLVVSATYSHDNLATLQKYMVDPLL--IRPEDATRPLLGVKQLVALIPE- 241
QML SATY + L+ YM + L IR T L G+KQ +
Sbjct: 284 NNSSSGSGIQMLAFSATYPSYLINLLKLYMNNENLVEIRLCSDTPSLEGIKQYYQIFRND 343
Query: 242 -CKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQD 300
+N + ++ K LV +L Q F Q +IF N+++R E + L + +++G Q+
Sbjct: 344 FTENNYKTFQNKCKSLVLVLEQVSFYQAIIFCNHKIRGEELTRQLNREGWPTAFIAGGQN 403
Query: 301 QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360
QK RL+++ + K +RILV+TDL +RGID V+LVINL++P D TY HR+GR GR+G
Sbjct: 404 QKDRLSTMSALKSFNIRILVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIGRTGRFG 463
Query: 361 TRGLVITIVSAES 373
T G+ IT ++ +S
Sbjct: 464 TYGVSITFINMKS 476
|
Probable ATP-binding RNA helicase which may be involved in pre-mRNA splicing. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 203/365 (55%), Gaps = 20/365 (5%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 29 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFC 88
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
V+ L + + + V++ Q +ILAPTRE+A QI V+ ++G ++ N+ IGGT V R
Sbjct: 89 VSVL-QCLDIQVRETQALILAPTRELAGQIQKVLLALGDYM-NVQCHACIGGTNVGEDIR 146
Query: 137 PV----QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 147 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 206
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252
Q+ ++SAT H+ L K+M DP+ I + L G+KQ + E
Sbjct: 207 TQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVER----------E 256
Query: 253 EKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLD 309
E K L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 257 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 316
Query: 310 SFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV 369
F+ G R+L++TD+ ARG+D + V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 317 EFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 376
Query: 370 SAESL 374
+ +
Sbjct: 377 KNDDI 381
|
ATP-dependent RNA helicase. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Core components of the EJC, that remains bound to spliced mRNAs throughout all stages of mRNA metabolism, functions to mark the position of the exon-exon junction in the mature mRNA and thereby influences downstream processes of gene expression including mRNA splicing, nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Constitutes at least part of the platform anchoring other EJC proteins to spliced mRNAs. Binds spliced mRNA in sequence-independent manner, 20-24 nucleotides upstream of mRNA exon-exon junctions. Danio rerio (taxid: 7955) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=FAL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 128/354 (36%), Positives = 198/354 (55%), Gaps = 19/354 (5%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+++ + +G+ F K S IQ A ++ G D I Q++SGTGK+ F ++ L I
Sbjct: 30 LKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQS-IDTN 88
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV----QIVVG 143
+++ Q ++L+PTRE+AVQI VV ++G ++ N+ IGGT V R + Q+V G
Sbjct: 89 LRETQALVLSPTRELAVQIQTVVLALGDYM-NVSCHACIGGTSVGEDIRKLEAGQQVVSG 147
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
+PGR+ MI+ + L +++ I+DE+D+L+N GF + I IY LPP Q++VVSAT
Sbjct: 148 TPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVVVVSATLP 207
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK---LVQLL 260
HD L K+M DP+ I + L G+KQ + + E+ K L L
Sbjct: 208 HDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEK----------EDWKFDTLCDLY 257
Query: 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320
Q VIF N + + + + E + ANF + G QK R A + F+ G+ R+L+
Sbjct: 258 DTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLI 317
Query: 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
TTD+ ARGID V LVIN ++P YLHR+GR+GR+G +G+ I V+ + +
Sbjct: 318 TTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDV 371
|
ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=FAL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 128/354 (36%), Positives = 198/354 (55%), Gaps = 19/354 (5%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+++ + +G+ F K S IQ A ++ G D I Q++SGTGK+ F ++ L I
Sbjct: 30 LKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQS-IDTN 88
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV----QIVVG 143
+++ Q ++L+PTRE+AVQI VV ++G ++ N+ IGGT V R + Q+V G
Sbjct: 89 LRETQALVLSPTRELAVQIQTVVLALGDYM-NVSCHACIGGTSVGEDIRKLEAGQQVVSG 147
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
+PGR+ MI+ + L +++ I+DE+D+L+N GF + I IY LPP Q++VVSAT
Sbjct: 148 TPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVVVVSATLP 207
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK---LVQLL 260
HD L K+M DP+ I + L G+KQ + + E+ K L L
Sbjct: 208 HDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEK----------EDWKFDTLCDLY 257
Query: 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320
Q VIF N + + + + E + ANF + G QK R A + F+ G+ R+L+
Sbjct: 258 DTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLI 317
Query: 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
TTD+ ARGID V LVIN ++P YLHR+GR+GR+G +G+ I V+ + +
Sbjct: 318 TTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDV 371
|
ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 202/365 (55%), Gaps = 20/365 (5%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 29 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFC 88
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
V+ L + + + V++ Q +ILAPTRE+A QI V+ ++G ++ N+ IGGT V R
Sbjct: 89 VSVL-QCLDIQVRETQALILAPTRELAGQIQKVLLALGDYM-NVQCHSCIGGTNVGEDIR 146
Query: 137 PV----QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 147 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 206
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252
Q+ ++SAT H+ L K+M DP+ I + L G+KQ + E
Sbjct: 207 TQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVER----------E 256
Query: 253 EKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLD 309
E K L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 257 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 316
Query: 310 SFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV 369
F+ G R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 317 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 376
Query: 370 SAESL 374
+ +
Sbjct: 377 KNDDI 381
|
ATP-dependent RNA helicase. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Core components of the EJC, that remains bound to spliced mRNAs throughout all stages of mRNA metabolism, functions to mark the position of the exon-exon junction in the mature mRNA and thereby influences downstream processes of gene expression including mRNA splicing, nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Constitutes at least part of the platform anchoring other EJC proteins to spliced mRNAs. Binds spliced mRNA in sequence-independent manner, 20-24 nucleotides upstream of mRNA exon-exon junctions. Salmo salar (taxid: 8030) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 202/365 (55%), Gaps = 20/365 (5%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 38 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFC 97
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
V+ L + + + V++ Q +ILAPTRE+A QI V+ ++G ++ N+ IGGT V R
Sbjct: 98 VSVL-QCLDIQVRETQALILAPTRELAGQIQKVLLALGDYM-NVQCHACIGGTNVGEDIR 155
Query: 137 PV----QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 156 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 215
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252
Q+ ++SAT H+ L K+M DP+ I + L G+KQ + E
Sbjct: 216 TQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVER----------E 265
Query: 253 EKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLD 309
E K L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 266 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 325
Query: 310 SFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV 369
F+ G R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 326 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFV 385
Query: 370 SAESL 374
+ +
Sbjct: 386 KNDDI 390
|
ATP-dependent RNA helicase. Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Core components of the EJC, that remains bound to spliced mRNAs throughout all stages of mRNA metabolism, functions to mark the position of the exon-exon junction in the mature mRNA and thereby influences downstream processes of gene expression including mRNA splicing, nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense-mediated mRNA decay (NMD). Constitutes at least part of the platform anchoring other EJC proteins to spliced mRNAs. When overexpressed, induces epidermis in dissociated cells that would otherwise adopt a neural fate, a process that requires an active BMP signaling pathway. Binds spliced mRNA in sequence-independent manner, 20-24 nucleotides upstream of mRNA exon-exon junctions. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 139/427 (32%), Positives = 231/427 (54%), Gaps = 26/427 (6%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D+ +++ + +G+ G+ S +Q A + G D I Q++SGTGK+ F ++ L ++I
Sbjct: 29 DMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISIL-QVI 87
Query: 85 KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV----QI 140
+++ Q ++L+PTRE+A QI VV ++G ++ N+ IGGT V R + +
Sbjct: 88 DTVLRETQALVLSPTRELATQIQSVVMALGDYM-NVQCHACIGGTNVGEDIRKLDHGQHV 146
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200
V G+PGR+ MI+ ++L +++ ++DEAD+L+N GF E I +Y LPP Q++VVSA
Sbjct: 147 VSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSA 206
Query: 201 TYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK---LV 257
T +D L K+M DP+ I + L G+KQ + + EE K L
Sbjct: 207 TLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEK----------EEWKFDTLC 256
Query: 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR 317
L Q VIF N + + + + + + ANF + G QK R + + F++G R
Sbjct: 257 DLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSR 316
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377
+L++TD+ ARGID V LVIN ++P + Y+HR+GR+GR+G +G+ I V++E +
Sbjct: 317 VLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDV--- 373
Query: 378 HSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQE-REDVEQTAEESSK 436
++ +I L ++ + +P N G R + L+ L Q+ R T S+
Sbjct: 374 -RILRDIELYYSTQIDEMPMN--GTLFYLRYRPMSRLSLWLTQSNSCRPSHVTTLSWSTN 430
Query: 437 VENTKPL 443
VE+T PL
Sbjct: 431 VEHTFPL 437
|
ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. Ajellomyces capsulata (strain NAm1 / WU24) (taxid: 339724) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2355 | ||||||
| 307205525 | 1226 | Probable ATP-dependent RNA helicase DDX2 | 0.213 | 0.410 | 0.393 | 7e-91 | |
| 260799081 | 1005 | hypothetical protein BRAFLDRAFT_87751 [B | 0.155 | 0.364 | 0.459 | 9e-90 | |
| 322799954 | 1251 | hypothetical protein SINV_07642 [Solenop | 0.166 | 0.314 | 0.422 | 1e-89 | |
| 383853237 | 1129 | PREDICTED: uncharacterized protein LOC10 | 0.162 | 0.338 | 0.444 | 8e-89 | |
| 390339493 | 1190 | PREDICTED: uncharacterized protein LOC58 | 0.154 | 0.306 | 0.462 | 4e-88 | |
| 350421869 | 1079 | PREDICTED: hypothetical protein LOC10074 | 0.162 | 0.354 | 0.434 | 4e-87 | |
| 328785812 | 1084 | PREDICTED: hypothetical protein LOC41121 | 0.162 | 0.352 | 0.434 | 7e-87 | |
| 345495557 | 1001 | PREDICTED: hypothetical protein LOC10012 | 0.162 | 0.381 | 0.426 | 3e-86 | |
| 332026566 | 1250 | Putative ATP-dependent RNA helicase DDX2 | 0.149 | 0.281 | 0.441 | 4e-86 | |
| 198435536 | 779 | PREDICTED: similar to Probable ATP-depen | 0.162 | 0.490 | 0.427 | 5e-84 |
| >gi|307205525|gb|EFN83831.1| Probable ATP-dependent RNA helicase DDX20 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 343 bits (880), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 205/521 (39%), Positives = 300/521 (57%), Gaps = 18/521 (3%)
Query: 2 AHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDA 61
AHDI K RT D+ +V F L EK I GL GF + SPIQ+ A P G+D
Sbjct: 6 AHDINKKLRTSDIKIQENVTFLEMGLPEK-IMDGLSFAGFERPSPIQLKAIPIGRCGFDL 64
Query: 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121
I+++KSGTGK+ VF + AL +++ + + PQ +I+APTREIA+QI++V++++G+ +K L
Sbjct: 65 ILRAKSGTGKTAVFGIIAL-EILDIQISSPQVLIVAPTREIAIQISNVLKTIGSEIKGLK 123
Query: 122 VDYFIGGTQVERPKRPV---QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178
V+YF+GG VE K+ + + VG+PGRIK +I K L + +VRLF++DEADKL+ T F
Sbjct: 124 VEYFVGGLSVEDDKKRLNECHVAVGAPGRIKHLIDKKLLKVSTVRLFVLDEADKLMETNF 183
Query: 179 VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL 238
+DI +I+S+L KQ++ SATY D L+ YM P+LI P+ L+G+KQ + +
Sbjct: 184 QKDINYIFSKLSLNKQVIASSATYPGDLEKFLEMYMCSPVLISPDLDGPILVGIKQFLVV 243
Query: 239 IPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGA 298
+ N + + +L ++ ++ PF Q ++FSNYQ R + + L + F + Y+ G+
Sbjct: 244 VSSHLNAMKQVQIKVDELQKIFTKIPFKQSLVFSNYQSRAQSVSNKLNSMGFSSTYIIGS 303
Query: 299 QDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGR 358
QD RL ++ + RIL+TTDL ARGID NV+LVINL+IP DAATYLHR+GRAGR
Sbjct: 304 QDMAKRLEIMEKLRNFNCRILMTTDLTARGIDVENVNLVINLDIPMDAATYLHRIGRAGR 363
Query: 359 YGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPD---NLTGDQINWTQRVQTLLA 415
YGT G+ ITIVS L F L+ + + + L PD ++ D I ++V +
Sbjct: 364 YGTHGISITIVSENELQSFRELLISVGGPNFYLFKLGPDYVEDVWADNITVFEKVY---S 420
Query: 416 KPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESD 475
KP E D+++ ES EN P+ + E T S +K T+ S E S
Sbjct: 421 KPEANGTELSDIDKGILES---ENGTPM-AILTSENTTFSTSSYNSKHIDTNTCSLENSG 476
Query: 476 SENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRK 516
+ N NG+Q SK +KC K + RK
Sbjct: 477 TNNTANL-SNGNQNKSKSI--LSKDKKCDKAITNETYTKRK 514
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|260799081|ref|XP_002594528.1| hypothetical protein BRAFLDRAFT_87751 [Branchiostoma floridae] gi|229279762|gb|EEN50539.1| hypothetical protein BRAFLDRAFT_87751 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 339 bits (870), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 171/372 (45%), Positives = 244/372 (65%), Gaps = 6/372 (1%)
Query: 2 AHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDA 61
AH +++ RT+DVL+ F + +L+ +P+++GL + GF + SPIQ+ A P G D
Sbjct: 10 AHKLREGWRTEDVLNTEGADFAS-LLLSEPVQRGLTQAGFERPSPIQLKAIPLGRCGLDL 68
Query: 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121
IVQ+KSGTGK+ VF V AL L+ L Q ++LAPTREIAVQI DVV S+G + L
Sbjct: 69 IVQAKSGTGKTCVFAVIALESLV-LETFSTQVLVLAPTREIAVQIHDVVVSIGQAMTGLK 127
Query: 122 VDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG- 177
FIGG V K R I +GSPGRIKQ+I+L L S+RLF++DEADKL+ TG
Sbjct: 128 CHVFIGGLPVHEDKQRLRKCHIAIGSPGRIKQLIELGVLKTTSIRLFVLDEADKLLETGS 187
Query: 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237
F E I WIYS LP KQM+ +SATY LQ YM DP +R + L G+KQ +
Sbjct: 188 FQEQINWIYSSLPDNKQMVALSATYPESLAHHLQVYMRDPTFVRLDIQDLSLKGIKQFYS 247
Query: 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG 297
+IP+ + S + + +L++LLS+ PF+QC++FSN Q R + +C++L + + Y++G
Sbjct: 248 VIPQQSSMSKAFQAKTDQLIKLLSRVPFHQCLVFSNDQGRAQSLCKDLNSKGWPTAYIAG 307
Query: 298 AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG 357
+Q+Q RL ++ + + R+LV+TDL ARGIDA V+LV+NL++P D TY+HR+GRAG
Sbjct: 308 SQEQTERLNAMSQLRNFQCRVLVSTDLTARGIDAEKVNLVVNLDVPQDWETYMHRIGRAG 367
Query: 358 RYGTRGLVITIV 369
R+GT+G +T+V
Sbjct: 368 RFGTQGAAVTLV 379
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|322799954|gb|EFZ21080.1| hypothetical protein SINV_07642 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 339 bits (870), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/400 (42%), Positives = 256/400 (64%), Gaps = 7/400 (1%)
Query: 1 MAHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
+AHDI K RT D+ +V F+ + + + I GL GF K SPIQ+ A P G+D
Sbjct: 5 IAHDINKKQRTNDIKIEENVTFD-QMRLPQEILDGLMSAGFNKPSPIQLKAIPLGRCGFD 63
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IV++KSGTGK++VF V AL L + +Q PQ +I+APTREIA+QIT V++++G+ ++ L
Sbjct: 64 LIVRAKSGTGKTLVFSVIALETL-NISIQLPQVLIVAPTREIAIQITYVIKAIGSQIEGL 122
Query: 121 HVDYFIGGTQVERPKRPV---QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
++YF+GG +E K+ + + +G+PGRI+ +I+ +L + VRLF++DEADKL+
Sbjct: 123 GIEYFVGGISIEEDKKKLNKCHVAIGAPGRIRHLIEKGFLQVSKVRLFVLDEADKLLEIS 182
Query: 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237
F +DI +I+S+LP KQ++ SATY D LQ YM P+L P L+G+KQ V
Sbjct: 183 FQKDINFIFSKLPSSKQVIASSATYPGDLETFLQTYMSSPILTSPNIDGPVLVGIKQFVV 242
Query: 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG 297
++P N + + +LV++ ++ PF Q +IFSNYQ R + + + + F + Y++G
Sbjct: 243 IVPAHPNVMKQVQTKVDELVKIFTKIPFKQSLIFSNYQSRAQSVSNKINSLGFSSSYIAG 302
Query: 298 AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG 357
Q RL ++++ + + RI++TTDL ARGID NV++VINL+IP D ATYLHR+GRAG
Sbjct: 303 NQVMTKRLEAIENLRNLECRIMLTTDLTARGIDIENVNMVINLDIPTDPATYLHRIGRAG 362
Query: 358 RYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPD 397
RYG+ G+ ITI+S L L+ I L++ F + PD
Sbjct: 363 RYGSYGISITIISENELSSLKKLLTSIGLNYLFKLN--PD 400
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383853237|ref|XP_003702129.1| PREDICTED: uncharacterized protein LOC100882286 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 172/387 (44%), Positives = 250/387 (64%), Gaps = 5/387 (1%)
Query: 1 MAHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
+AHDI K RTKD+ DV F +K I GL GF K SPIQ+ A P G+D
Sbjct: 5 IAHDICKKPRTKDIKIQEDVTFFQMGFSQK-ILDGLSVCGFQKPSPIQLKAIPLGRCGFD 63
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
I+++KSGTGK++VF V AL +++ + V Q +ILAPTREIA+QI+ V+ SVG +K L
Sbjct: 64 LIMRAKSGTGKTLVFSVIAL-EMLDVQVLSIQVLILAPTREIAIQISQVISSVGCEMKGL 122
Query: 121 HVDYFIGGTQVERPKRPV---QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
V+ FIGG + K+ + + VG+PGRI+ +I LN++++RLF++DEADKL+ T
Sbjct: 123 KVEVFIGGIAINEDKKKLNGCHVAVGAPGRIRHLIDKGILNVENIRLFVLDEADKLMETS 182
Query: 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237
F +DI +I+S+LP KQ++ SATY D LQ YM P++ ++ L+G+KQ VA
Sbjct: 183 FQKDINFIFSKLPINKQVIASSATYLGDLETFLQTYMCSPVVTSSDNDEPILVGLKQFVA 242
Query: 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG 297
++P N + + +L ++L+ PF QC+ FSNYQ R + +C + + F A Y++G
Sbjct: 243 IVPFHPNAMKQVQIKVDELTKILNSVPFKQCLAFSNYQSRAQSVCNKIISMGFSATYIAG 302
Query: 298 AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG 357
QD RL +++ K K RI++TTDL ARGID NV+LV+NL++P+DA TYLHR+GRAG
Sbjct: 303 NQDMTKRLDAINKLKSFKCRIMITTDLTARGIDVDNVNLVVNLDLPNDAPTYLHRIGRAG 362
Query: 358 RYGTRGLVITIVSAESLVKFHSLMGEI 384
RYG+ G+ ITIV+ + F L+ +
Sbjct: 363 RYGSYGISITIVAENEIETFKELLNSV 389
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|390339493|ref|XP_793570.2| PREDICTED: uncharacterized protein LOC588813 [Strongylocentrotus purpuratus] | Back alignment and taxonomy information |
|---|
Score = 334 bits (856), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 174/376 (46%), Positives = 242/376 (64%), Gaps = 11/376 (2%)
Query: 2 AHDIQKCARTKDVL----SNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLN 57
AH I + RT DVL SN+D + + + +P+ GLQ+ GF K SPIQ+ A P
Sbjct: 19 AHAINERERTSDVLTEENSNVDF---SSMFLSEPVTAGLQKVGFEKPSPIQLKAIPLGRC 75
Query: 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117
G D IVQ+KSGTGK+ VF V AL I L Q +ILAPTREIAVQI D +R++G +
Sbjct: 76 GLDLIVQAKSGTGKTCVFSVIALEG-IDLTNPSTQVLILAPTREIAVQIQDTIRAIGCEM 134
Query: 118 KNLHVDYFIGGTQV--ERPK-RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174
+ L FIGGT +R K + I VG+PGRIKQ+I+ + L ++RLF++DEADKL+
Sbjct: 135 EGLRSHVFIGGTLFGPDRQKLKKCHIAVGTPGRIKQLIEYEVLKTGTIRLFVLDEADKLL 194
Query: 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQ 234
+ F E + WIY+ L KQML +SATY L KYM +P+ +R L G+KQ
Sbjct: 195 DDTFQEQVNWIYNHLSDNKQMLALSATYPEYLAKHLTKYMREPMFVRLNPKDLALRGIKQ 254
Query: 235 LVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
L +P P+ + + KL+++L+Q FNQC+IFSN Q R + +C+ L ++ + +E
Sbjct: 255 LYVELPGHSLPNKAFEIKVIKLLKILTQVSFNQCLIFSNLQTRAQNLCDILCDSGWPSEC 314
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SGAQ+Q RL+++ K+ + RIL++TDL ARGIDA NV+L+INL+IP D TYLHR+G
Sbjct: 315 ISGAQEQSQRLSAMAKLKKFQCRILISTDLTARGIDAENVNLIINLDIPTDTKTYLHRIG 374
Query: 355 RAGRYGTRGLVITIVS 370
RAGR+GT G I++ S
Sbjct: 375 RAGRFGTHGAAISLAS 390
|
Source: Strongylocentrotus purpuratus Species: Strongylocentrotus purpuratus Genus: Strongylocentrotus Family: Strongylocentrotidae Order: Echinoida Class: Echinoidea Phylum: Echinodermata Superkingdom: Eukaryota |
| >gi|350421869|ref|XP_003492983.1| PREDICTED: hypothetical protein LOC100742995 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 331 bits (848), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 168/387 (43%), Positives = 248/387 (64%), Gaps = 5/387 (1%)
Query: 1 MAHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
+AHDI K RTKD+ D+ F +K I GL GF + SPIQ+ A P G+D
Sbjct: 5 IAHDIDKKPRTKDIKVQEDITFYQMGFSQK-ILDGLSLCGFQRPSPIQLKAIPLGRCGFD 63
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IV++KSGTGK++VF + +L ++I + + Q ++LAPTREIAVQI V SV ++ L
Sbjct: 64 LIVRAKSGTGKTLVFCIISL-EMIDIDISSVQVLVLAPTREIAVQIAQVFSSVACEIEGL 122
Query: 121 HVDYFIGGTQVERPKRPV---QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
V+ FIGGT +E ++ + I VG+PGRI+ +I ++L +++VRLFI+DEADKL+ T
Sbjct: 123 KVEVFIGGTAIESDRKKLNNCHIAVGAPGRIRHLIDKEFLKVENVRLFILDEADKLMETS 182
Query: 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237
F +DI +I+S+LP KQ++ SATY D LQ YM P+L P++ L+G+ Q +
Sbjct: 183 FQKDINYIFSKLPLSKQVIASSATYPGDLEIFLQAYMCSPVLASPDNNEPILVGLTQFIT 242
Query: 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG 297
++P N + + +L+++ ++ PF Q ++FSNYQ R + +C ++ F A + +G
Sbjct: 243 VVPSHPNVMKQVQIKVDELIKIFNKIPFKQSLVFSNYQSRAQSVCNKISAMGFKATFFAG 302
Query: 298 AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG 357
QD RL +++ K K +I+VTTDL ARGIDA NV+LV+NL++P DA TYLHR+GRAG
Sbjct: 303 NQDMNKRLEAINKLKTFKCKIMVTTDLTARGIDADNVNLVVNLDLPIDAPTYLHRIGRAG 362
Query: 358 RYGTRGLVITIVSAESLVKFHSLMGEI 384
RYG+ GL ITI++ L L+ I
Sbjct: 363 RYGSYGLSITIIAENELETLKKLLMSI 389
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328785812|ref|XP_394691.4| PREDICTED: hypothetical protein LOC411217 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 330 bits (846), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 168/387 (43%), Positives = 251/387 (64%), Gaps = 5/387 (1%)
Query: 1 MAHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
+AHDI K RTKD+ DV F +K I GL GF + SPIQ+ A P G+D
Sbjct: 5 IAHDINKKPRTKDIKIQDDVTFFQMGFSQK-ILDGLSVCGFQRPSPIQLKAIPLGRCGFD 63
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
I+++KSGTGK++VF + +L ++I + + Q +ILAPTREIAVQI V SVG +K+L
Sbjct: 64 LIMRAKSGTGKTLVFCIISL-EMIDIDISSVQVLILAPTREIAVQIAQVFSSVGCEIKDL 122
Query: 121 HVDYFIGGTQVERPKRPV---QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
V+ FIGG +E K+ V QI VG+PGRI+ +I +L +++VRLF++DEADKL+ T
Sbjct: 123 KVEVFIGGLAIENDKKKVNNCQIAVGAPGRIRHLIDKGFLKVENVRLFVLDEADKLMETS 182
Query: 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237
F +DI +I+S+LP KQ++ SATY D LQ YM P+L+ P + L+G++Q V
Sbjct: 183 FQKDINYIFSKLPLSKQVIASSATYPGDLEIFLQTYMCSPVLVSPNNNEPILIGLRQFVT 242
Query: 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG 297
++P N + + +L+++ ++ PF Q ++FSNYQ R + +C + + F A +++G
Sbjct: 243 IVPSHPNAMKQVQIKVDELIKIFNKVPFKQSLVFSNYQSRAQSVCNKINSIGFTATFIAG 302
Query: 298 AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG 357
Q+ RL +++ K K +I++TTDL ARGIDA NV+LV+NL++P DA TYLHR+GRAG
Sbjct: 303 NQNMNKRLEAINKLKTFKCKIMLTTDLTARGIDADNVNLVVNLDLPTDAPTYLHRIGRAG 362
Query: 358 RYGTRGLVITIVSAESLVKFHSLMGEI 384
RYG+ G+ ITI++ + L+ +
Sbjct: 363 RYGSYGISITIIAENEIETLKQLLTSV 389
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345495557|ref|XP_001604556.2| PREDICTED: hypothetical protein LOC100120961 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 328 bits (841), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 165/387 (42%), Positives = 250/387 (64%), Gaps = 5/387 (1%)
Query: 1 MAHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
+AH++ RT D+ DV F + + + + + GL GF K SPIQ + P G+D
Sbjct: 5 IAHNLSAKERTSDIEIQEDVTF-SQMGLSQQVLNGLLNCGFHKPSPIQHKSIPLGRCGFD 63
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IV++KSGTGK+ VF + AL ++I + + Q IILAPTREIA+QI +V+ S+G +K L
Sbjct: 64 LIVRAKSGTGKTAVFGIIAL-EMIDIKISSVQVIILAPTREIAIQIKEVIASLGCEIKGL 122
Query: 121 HVDYFIGGTQVERPKRPV---QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
V+ FIGG ++ ++ + I +G+PGR+K +I YL MD VRLF++DEADKL+
Sbjct: 123 KVESFIGGVAMDIDRKKLSNCHIAIGAPGRVKHLIDKGYLKMDHVRLFVLDEADKLMEES 182
Query: 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237
F +DI +IY++LPP +Q++ SATY D L+ YM P+L ++ L+G++Q +
Sbjct: 183 FQKDINYIYAKLPPNRQVISSSATYPGDLEIFLESYMQSPILSSADNDGPILVGLRQFAS 242
Query: 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG 297
++P+ N + + ++L+++ + PF QC++F+NYQ R + +C + + F A ++ G
Sbjct: 243 IVPQHLNAMRQVQIKVEELIKIFKKVPFKQCLVFTNYQTRAQSVCNKITSMGFPAIFIVG 302
Query: 298 AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG 357
Q+ RL ++ K K RIL+TTDL ARGIDA NV+LVINL+IP D+ATYLHR+GRAG
Sbjct: 303 NQNMNKRLDAMKKLKNFKCRILLTTDLTARGIDAENVNLVINLDIPSDSATYLHRIGRAG 362
Query: 358 RYGTRGLVITIVSAESLVKFHSLMGEI 384
RYG+RG+ I IV+ + L F L+ I
Sbjct: 363 RYGSRGIAINIVAEKELNMFQDLLQSI 389
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332026566|gb|EGI66684.1| Putative ATP-dependent RNA helicase DDX20 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 327 bits (839), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 235/356 (66%), Gaps = 4/356 (1%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQP 91
I GL GF K SPIQ+ A P G+D IV++KSGTGK+IVF V AL+ ++ + V P
Sbjct: 7 ILDGLMSAGFQKPSPIQLKAIPLGRYGFDLIVRAKSGTGKTIVFGVIALD-ILDILVGSP 65
Query: 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV---QIVVGSPGRI 148
Q +I+APTREIA+QIT V++++G+ ++ L V+YF+GG +E K+ + I VG+PGR+
Sbjct: 66 QVLIIAPTREIAIQITYVIKTIGSKIEGLRVEYFVGGISIEEDKKKLSKCHIAVGAPGRV 125
Query: 149 KQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLA 208
K +I+ +L + ++LF++DEADKL+ F +DI +I+S+LP KQ++ SATY D
Sbjct: 126 KHLIEKGFLQVSKIKLFVLDEADKLMEINFQKDINYIFSKLPSSKQIIASSATYPGDLET 185
Query: 209 TLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQC 268
LQ YM P+L P L+G+KQ VA++P N + + +LV++ ++ PF Q
Sbjct: 186 FLQTYMSSPVLTSPNIDGPVLIGIKQFVAVVPTHPNMMKQVQTKIDELVKIFTKIPFKQS 245
Query: 269 VIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARG 328
++FSNYQ R + + + + F + Y+ G QD RL ++++ + + RI++TTDL ARG
Sbjct: 246 LVFSNYQSRAQSVSNKINSLGFSSSYIVGNQDMTKRLETIENLRNLEYRIMLTTDLTARG 305
Query: 329 IDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384
ID NV++VINL+IP D ATYLHR+GRAGRYG+ G+ +TIV+ L F L+ I
Sbjct: 306 IDIENVNMVINLDIPTDPATYLHRIGRAGRYGSYGISVTIVTENELSSFRKLLISI 361
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198435536|ref|XP_002132135.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX20 (DEAD box protein 20) [Ciona intestinalis] | Back alignment and taxonomy information |
|---|
Score = 320 bits (821), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 167/391 (42%), Positives = 244/391 (62%), Gaps = 9/391 (2%)
Query: 1 MAHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
+AHD+ RT D+ + V FE D+L+ + GL+++GF K SPIQ+ A P G+D
Sbjct: 5 IAHDLDSKTRTDDIAAQESVTFE-DILVSDFVLSGLKKSGFHKPSPIQLKAIPLGRCGFD 63
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
+VQ+KSGTGK+ VF V AL+ I Q I+LAPTREIA+QI +VV ++G ++ L
Sbjct: 64 LVVQAKSGTGKTCVFSVIALDS-IDAKSAALQVIVLAPTREIALQIHEVVSTIGQDIEQL 122
Query: 121 HVDYFIGGTQV----ERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176
V FIGGT V ++ KR I +GSPGRIKQ+I L L +++VRLF++DEADKL+
Sbjct: 123 SVQVFIGGTLVSEDRQKAKR-CHIAIGSPGRIKQLISLGVLAVNNVRLFVLDEADKLVEE 181
Query: 177 G-FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQL 235
G + I WIYS LP KQML +SATY L KYM P +R LLG+KQ
Sbjct: 182 GGLQQQINWIYSSLPSTKQMLALSATYPEALAKFLTKYMQQPTFVRLNPTDPSLLGLKQY 241
Query: 236 VALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYL 295
L+ ECK P + ++ + ++++LS + Q ++FSNY R E +C L ++ + + ++
Sbjct: 242 YLLVKECKLPHQLFEEKTRCIIEILSSMTYQQALLFSNYHTRAETLCNALNSSGWRSTFI 301
Query: 296 SGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGR 355
SG +Q R ++ K + RIL++TDL +RGIDA NVD+VIN+++P D TY+HR+GR
Sbjct: 302 SGNMEQWRRTEAITRLKSYQCRILISTDLTSRGIDAQNVDVVINMDVPTDWETYMHRIGR 361
Query: 356 AGRYGTRGLVITIVS-AESLVKFHSLMGEIN 385
AGR+G G +++VS + H++ + N
Sbjct: 362 AGRFGAYGTAVSLVSPGVEASRLHAIAAQCN 392
|
Source: Ciona intestinalis Species: Ciona intestinalis Genus: Ciona Family: Cionidae Order: Enterogona Class: Ascidiacea Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2355 | ||||||
| UNIPROTKB|F1PXG6 | 825 | DDX20 "Uncharacterized protein | 0.153 | 0.438 | 0.466 | 9.5e-84 | |
| UNIPROTKB|J9P828 | 825 | DDX20 "Uncharacterized protein | 0.153 | 0.438 | 0.466 | 9.5e-84 | |
| UNIPROTKB|F1MRW7 | 825 | DDX20 "Uncharacterized protein | 0.153 | 0.438 | 0.466 | 1.2e-81 | |
| MGI|MGI:1858415 | 825 | Ddx20 "DEAD (Asp-Glu-Ala-Asp) | 0.203 | 0.581 | 0.388 | 2.9e-81 | |
| UNIPROTKB|F1SBP3 | 832 | DDX20 "Uncharacterized protein | 0.214 | 0.605 | 0.382 | 1.3e-80 | |
| UNIPROTKB|F1MAM8 | 824 | Ddx20 "Protein Ddx20" [Rattus | 0.153 | 0.439 | 0.458 | 6.1e-80 | |
| UNIPROTKB|Q9UHI6 | 824 | DDX20 "Probable ATP-dependent | 0.205 | 0.588 | 0.387 | 7.8e-79 | |
| UNIPROTKB|E9PSX0 | 826 | Ddx20 "Protein Ddx20" [Rattus | 0.153 | 0.438 | 0.456 | 9e-79 | |
| ZFIN|ZDB-GENE-030131-202 | 789 | ddx20 "DEAD (Asp-Glu-Ala-Asp) | 0.194 | 0.580 | 0.382 | 1.4e-77 | |
| UNIPROTKB|F1NRN3 | 676 | DDX20 "Uncharacterized protein | 0.215 | 0.751 | 0.363 | 7.7e-76 |
| UNIPROTKB|F1PXG6 DDX20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 174/373 (46%), Positives = 233/373 (62%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHD+ ART DVL FE+ +L+ +P+ GL+ GF + SP+Q+ A P G D
Sbjct: 45 AHDVSGPRARTGDVLLAEPADFES-LLLSRPVLDGLRAAGFERPSPVQLKAIPLGRCGLD 103
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ L+ L Q Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 104 LIVQAKSGTGKTCVFSTIALDSLV-LENQSTQILILAPTREIAVQIHSVITAIGIKMEGL 162
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 163 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 222
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L KYM DP +R + L+G+KQ
Sbjct: 223 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYY 282
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L+ F AE
Sbjct: 283 KIVNSY--PLAHKIFEEKAQHLQELFSRIPFNQALVFSNLHSRAQHLADILSAKGFPAEC 340
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 341 ISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 400
Query: 355 RAGRYGTRGLVIT 367
RAGR+GT GL +T
Sbjct: 401 RAGRFGTLGLTVT 413
|
|
| UNIPROTKB|J9P828 DDX20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 174/373 (46%), Positives = 233/373 (62%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHD+ ART DVL FE+ +L+ +P+ GL+ GF + SP+Q+ A P G D
Sbjct: 45 AHDVSGPRARTGDVLLAEPADFES-LLLSRPVLDGLRAAGFERPSPVQLKAIPLGRCGLD 103
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ L+ L Q Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 104 LIVQAKSGTGKTCVFSTIALDSLV-LENQSTQILILAPTREIAVQIHSVITAIGIKMEGL 162
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 163 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 222
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L KYM DP +R + L+G+KQ
Sbjct: 223 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYY 282
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L+ F AE
Sbjct: 283 KIVNSY--PLAHKIFEEKAQHLQELFSRIPFNQALVFSNLHSRAQHLADILSAKGFPAEC 340
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 341 ISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 400
Query: 355 RAGRYGTRGLVIT 367
RAGR+GT GL +T
Sbjct: 401 RAGRFGTLGLTVT 413
|
|
| UNIPROTKB|F1MRW7 DDX20 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 1.2e-81, Sum P(3) = 1.2e-81
Identities = 174/373 (46%), Positives = 235/373 (63%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHDI RT DVL FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 43 AHDISGPRTRTGDVLLAEPADFES-LLLSRPVLEGLRAVGFERPSPVQLKAIPLGRCGLD 101
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ L+ L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 102 LIVQAKSGTGKTCVFSTIALDSLV-LENLSTQILILAPTREIAVQIHSVITAIGIKMEGL 160
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 161 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 220
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L KYM +P +R + L+G+KQ
Sbjct: 221 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMREPTFVRLNSSDPSLIGLKQYY 280
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F AEY
Sbjct: 281 KIVNSY--PLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPAEY 338
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG DQ RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 339 ISGNMDQNRRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDCETYMHRIG 398
Query: 355 RAGRYGTRGLVIT 367
RAGR+GT GL +T
Sbjct: 399 RAGRFGTLGLTVT 411
|
|
| MGI|MGI:1858415 Ddx20 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 20" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.9e-81, Sum P(2) = 2.9e-81
Identities = 194/499 (38%), Positives = 274/499 (54%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHDI RT DV+ FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 44 AHDIGGPRTRTGDVVLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLD 102
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ LI L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 103 LIVQAKSGTGKTCVFSTIALDSLI-LENYSTQILILAPTREIAVQIHSVITAIGIKMEGL 161
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 162 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 221
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L +YM DP +R + L+G+KQ
Sbjct: 222 SFQEQINWIYSSLPASKQMLAVSATYPEVLANALTRYMRDPTFVRLNPSDPSLIGLKQYY 281
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F E
Sbjct: 282 QVVNSY--PLAHKIFEEKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTEC 339
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 340 ISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 399
Query: 355 RAGRYGTRGLVITIVS-AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTL 413
RAGR+GT GL +T E + + N++ +P L + +NW V+
Sbjct: 400 RAGRFGTLGLTVTYCCRGEEENMMMKIAQKCNINLLPLPDPIPPGLMEECLNWDVEVKAA 459
Query: 414 L---AKPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQS 470
+ + P Q + Q E + + + T P PS T A K +
Sbjct: 460 MHTYSSPTVATQSPKKQVQKLERAFQSQRT-PGNQTPSPRNTSASALSARPKHSKPKLPV 518
Query: 471 EEESDS---ENDGKPDENG 486
+ S+ E P E+G
Sbjct: 519 KSHSECGVLEKAAPPQESG 537
|
|
| UNIPROTKB|F1SBP3 DDX20 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.3e-80, Sum P(3) = 1.3e-80
Identities = 206/539 (38%), Positives = 292/539 (54%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHD+ RT DVL FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 50 AHDVGGPRTRTGDVLLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLD 108
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ L+ L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 109 LIVQAKSGTGKTCVFSTIALDSLV-LENLSTQILILAPTREIAVQIHSVITAIGVKMEGL 167
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 168 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 227
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L KYM +P +R + L+G+KQ
Sbjct: 228 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMREPTFVRLNSSDPSLIGLKQYY 287
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F A
Sbjct: 288 KVVNSY--PLAHKIFEEKAQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPAVC 345
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 346 ISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 405
Query: 355 RAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPD----NLTGDQINWTQRV 410
RAGR+GT GL +T + ++M +I N+ L+PD L + ++W V
Sbjct: 406 RAGRFGTLGLTVTYCCRG---EEENMMMKIAQKCHINLLLLPDPIPPGLMEECLDWDVEV 462
Query: 411 QTLLAKPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEV-----TKKGA----SKEGT 461
+ + D A + ++ K+E T R A V T A SK T
Sbjct: 463 EAAM-HTYDLANV--PTQPLKKQIQKIERTFQTRKAHGNHVASSRNTSVSALSVKSKNNT 519
Query: 462 KWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKD 520
K L E E P+E GS + ++ K V+ + E+ N + KD
Sbjct: 520 KQKLPMKSHSECGVVEKAASPEEPGS--AVQLEEQMKNS---VQNSVENSNNSQHHVKD 573
|
|
| UNIPROTKB|F1MAM8 Ddx20 "Protein Ddx20" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 6.1e-80, Sum P(3) = 6.1e-80
Identities = 171/373 (45%), Positives = 233/373 (62%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHDI RT DV+ FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 43 AHDIGGPRTRTGDVVLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLD 101
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ LI L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 102 LIVQAKSGTGKTCVFSTIALDSLI-LENYSTQILILAPTREIAVQIHSVITAIGIKMEGL 160
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 161 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 220
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L +YM DP +R + L+G+KQ
Sbjct: 221 SFQEQINWIYSSLPASKQMLAVSATYPEILANALTRYMRDPTFVRLNPSDPSLIGLKQYY 280
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F E
Sbjct: 281 QVVNSY--PLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPTEC 338
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 339 ISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 398
Query: 355 RAGRYGTRGLVIT 367
RAGR+GT GL +T
Sbjct: 399 RAGRFGTLGLTVT 411
|
|
| UNIPROTKB|Q9UHI6 DDX20 "Probable ATP-dependent RNA helicase DDX20" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 776 (278.2 bits), Expect = 7.8e-79, Sum P(2) = 7.8e-79
Identities = 196/506 (38%), Positives = 277/506 (54%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
RT DVL FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D IVQ+KSGT
Sbjct: 52 RTGDVLLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGT 110
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ VF AL+ L+ L Q +ILAPTREIAVQI V+ ++G ++ L FIGGT
Sbjct: 111 GKTCVFSTIALDSLV-LENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGT 169
Query: 130 QVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWI 185
+ + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G F E I WI
Sbjct: 170 PLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWI 229
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
YS LP KQML VSATY L KYM DP +R + L+G+KQ ++ P
Sbjct: 230 YSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSY--P 287
Query: 246 SLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303
V EEK L +L S+ PFNQ ++FSN R + + + L++ F AE +SG +Q
Sbjct: 288 LAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQ 347
Query: 304 RLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG 363
RL ++ K R+L++TDL +RGIDA V+LV+NL++P D TY+HR+GRAGR+GT G
Sbjct: 348 RLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLG 407
Query: 364 LVITIVS-AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTL-----LAKP 417
L +T E + + N++ +P L + ++W V+ +A
Sbjct: 408 LTVTYCCRGEEENMMMRIAQKCNINLLPLPDPIPSGLMEECVDWDVEVKAAVHTYGIASV 467
Query: 418 LDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGAS---KEGTKWNLTDGQSEEES 474
+Q +++ Q E + +++ A S+ + G S K TK L E
Sbjct: 468 PNQPLKKQI--QKIERTLQIQKAHGDHMASSRNNSVSGLSVKSKNNTKQKLPVKSHSECG 525
Query: 475 DSENDGKPDENGSQRGSKRSKEFKTQ 500
E P E G R S+ + Q
Sbjct: 526 IIEKATSPKELGCDRQSEEQMKNSVQ 551
|
|
| UNIPROTKB|E9PSX0 Ddx20 "Protein Ddx20" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 9.0e-79, Sum P(3) = 9.0e-79
Identities = 171/375 (45%), Positives = 233/375 (62%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHDI RT DV+ FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 43 AHDIGGPRTRTGDVVLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLD 101
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ LI L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 102 LIVQAKSGTGKTCVFSTIALDSLI-LENYSTQILILAPTREIAVQIHSVITAIGIKMEGL 160
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 161 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 220
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L +YM DP +R + L+G+KQ
Sbjct: 221 SFQEQINWIYSSLPASKQMLAVSATYPEILANALTRYMRDPTFVRLNPSDPSLIGLKQYY 280
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F E
Sbjct: 281 QVVNSY--PLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPTEC 338
Query: 295 LSGA--QDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHR 352
+SG +Q RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR
Sbjct: 339 ISGNGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHR 398
Query: 353 MGRAGRYGTRGLVIT 367
+GRAGR+GT GL +T
Sbjct: 399 IGRAGRFGTLGLTVT 413
|
|
| ZFIN|ZDB-GENE-030131-202 ddx20 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 20" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 775 (277.9 bits), Expect = 1.4e-77, Sum P(2) = 1.4e-77
Identities = 181/473 (38%), Positives = 277/473 (58%)
Query: 2 AHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDA 61
AH++Q RT DVL + V F + +L+ KP+ +GL +GF + SPIQ+ A P G D
Sbjct: 36 AHELQSRTRTDDVLISGGVEFSS-LLLSKPVLEGLSASGFQRPSPIQLKAIPLGRCGLDL 94
Query: 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121
IVQ+KSGTGK+ VF AL+ LI L Q ++LAPTREIAVQI VV ++G+ ++ L
Sbjct: 95 IVQAKSGTGKTCVFTTIALDSLI-LENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLE 153
Query: 122 VDYFIGGTQVERPKRPVQ---IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI---- 174
FIGG + + K+ ++ I +GSPGRIKQ+I++ L + S+RLF++DEADKL+
Sbjct: 154 CHVFIGGRPISQDKQHLKKCHIAIGSPGRIKQLIEMGALMVSSIRLFVLDEADKLLEDDS 213
Query: 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQ 234
++ F E I WIYS LP KQML +SATY L +YM +P +R LLG+KQ
Sbjct: 214 SSSFQEQINWIYSSLPANKQMLALSATYPESLAQQLSRYMREPTFVRLNPTDPGLLGLKQ 273
Query: 235 LVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++P P + ++ + L++L S+ PFNQ ++FSN R + + + L++ A
Sbjct: 274 YYKIVPSHSLPHKVFEEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVC 333
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG Q RL ++ K+ + R+L++TDL +RGIDA V+LVINL++P D TY+HR+G
Sbjct: 334 ISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIG 393
Query: 355 RAGRYGTRGLVITIVS-AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTL 413
RAGR+GT G+ +T E K ++ + +LD +P + + + ++TL
Sbjct: 394 RAGRFGTLGVAVTYCCHGEEENKMMAIAQKCSLDLMHLPDPIPPGIMEEACDHDVIIETL 453
Query: 414 LAKPL--DQAQ-EREDVEQTAEESSKVENTKPLRGAPSKEVT-KKGASKEGTK 462
+KP D + E++ ++ + SK + ++ VT K S+ TK
Sbjct: 454 -SKPKIPDNFKPEKKKKAKSEQMKSKPSRESHISVVITESVTGDKSCSRAETK 505
|
|
| UNIPROTKB|F1NRN3 DDX20 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 7.7e-76, Sum P(3) = 7.7e-76
Identities = 188/517 (36%), Positives = 273/517 (52%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
RT+DVL +L+ P+ GL+ GF + SP+Q+ A P G D IVQ+KSGT
Sbjct: 10 RTRDVLLPGGPSDFGSLLLSPPVLAGLEAAGFHRPSPVQLKAIPLGRCGLDLIVQAKSGT 69
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ VF AL+ L+ L Q +ILAPTREIAVQI V+ ++G ++ L FIGGT
Sbjct: 70 GKTCVFSTIALDALL-LDSPATQVLILAPTREIAVQIHAVITTIGIKMEGLECHVFIGGT 128
Query: 130 QVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWI 185
+ + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G F E I WI
Sbjct: 129 PLSQDKVRLKKCHIAVGSPGRIKQLIELDYLNTASIRLFILDEADKLLEEGSFQEQINWI 188
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
YS LP KQML VSATY L YM +P +R L+G+KQ ++ P
Sbjct: 189 YSSLPANKQMLAVSATYPESLANALTMYMREPTFVRLNPTDPSLIGLKQYYKIVNSHPLP 248
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
+ ++ + L +L S+ PFNQ ++FSN R + + E L + F AE +SG+ +Q RL
Sbjct: 249 HKTFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLAEILTSRGFPAECISGSMNQSQRL 308
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
++ K+ R+L++TDL +RGIDA V+LVINL++P D TY+HR+GRAGR+GT GL
Sbjct: 309 DAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVINLDVPVDWETYMHRIGRAGRFGTLGLS 368
Query: 366 ITIVS-AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQER 424
+T E + + NL +P + +W V+ ++ +
Sbjct: 369 VTYCCRGEEENMMMKIAQKCNLQLLPLPEPIPPGMMDQFDDWEVEVKPVVYTGASVNSDT 428
Query: 425 EDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDE 484
++ V+N P + +S E K L ++ ++S K
Sbjct: 429 VCLKPEEPVLQPVQNNSAEVPQPHSNLPVGNSSVEKPKNALEQKLVKKHTNSAKVEKSSR 488
Query: 485 NG--SQRGSKRSKEFKTQEKCVKGAGEDENGDRKASK 519
N S +K+ + +T + + G E D +A K
Sbjct: 489 NSKTSSCNTKQKNQVETVSR-MAGQSNTEVPDEEALK 524
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.737 |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2355 | |||
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 5e-93 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 7e-68 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 3e-60 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 1e-58 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 6e-54 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 2e-50 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 2e-49 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 2e-47 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 5e-46 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 1e-44 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 4e-43 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 5e-41 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 2e-35 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 4e-34 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 7e-33 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 4e-29 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-22 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 1e-21 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-08 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 2e-07 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 3e-07 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 2e-06 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 1e-05 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 1e-05 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 8e-05 | |
| PRK05580 | 679 | PRK05580, PRK05580, primosome assembly protein Pri | 1e-04 | |
| TIGR00595 | 505 | TIGR00595, priA, primosomal protein N' | 2e-04 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 2e-04 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 5e-04 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 8e-04 | |
| COG1198 | 730 | COG1198, PriA, Primosomal protein N' (replication | 0.001 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 0.002 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 0.002 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 0.003 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 311 bits (799), Expect = 5e-93
Identities = 142/507 (28%), Positives = 235/507 (46%), Gaps = 37/507 (7%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ + Q L++ GF + +PIQ+AA P +L G D + Q+++GTGK+ F++ L K++K
Sbjct: 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV 95
Query: 88 -VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVV 142
+ +ILAPTRE+AVQI + +R +G ++ L V GG Q+E KR V IVV
Sbjct: 96 ERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVV 155
Query: 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202
+PGR+ +IK L++ V ++DEAD++++ GF++DI I LPP +Q L+ SAT
Sbjct: 156 ATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATM 215
Query: 203 SHDNLATLQKYMVDPLLIR--PEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL 260
D ++Y+ DP+ I E R L +KQ E ++ + + L++LL
Sbjct: 216 PDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYL---EVESEEEK----LELLLKLL 268
Query: 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320
+ ++F + E + E+L F L G Q+ R +L+ FK G++R+LV
Sbjct: 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLV 328
Query: 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA-ESLVKFHS 379
TD+AARG+D +V VIN ++P D Y+HR+GR GR G +G+ I+ V+ E + K
Sbjct: 329 ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKR 388
Query: 380 LMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKVEN 439
+ ++ + +P D + EES +
Sbjct: 389 IE----------------KRLERKLPSAVLLPLD--EPEDAKLLKTTRPGLEEESDISDE 430
Query: 440 TKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKT 499
K L+ + + G +K G+ + P+ S
Sbjct: 431 IKKLKSSKKALLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDPELERRSPNSAD----DI 486
Query: 500 QEKCVKGAGEDENGDRKASKDEQKIDG 526
+ + E K K+
Sbjct: 487 EYILKGLSYRAEERTAKNEAANIKLQS 513
|
Length = 513 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 7e-68
Identities = 136/384 (35%), Positives = 215/384 (55%), Gaps = 27/384 (7%)
Query: 9 ARTKDVLSNIDVL---FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQS 65
A T + SN D + F+ L E +R G+ GF K S IQ +L+GYD I Q+
Sbjct: 14 ASTGTIESNYDEIVDSFDALKLNEDLLR-GIYSYGFEKPSAIQQRGIKPILDGYDTIGQA 72
Query: 66 KSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYF 125
+SGTGK+ FV+AAL +LI + Q +ILAPTRE+A QI VV ++G ++K +
Sbjct: 73 QSGTGKTATFVIAAL-QLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK-VRCHAC 130
Query: 126 IGGTQV----ERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVED 181
+GGT V + K V +VVG+PGR+ MI ++L +D ++LFI+DEAD++++ GF
Sbjct: 131 VGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQ 190
Query: 182 ITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALI 239
I ++ +LPP Q+ + SAT ++ L K+M DP +L++ ++ T L G++Q +
Sbjct: 191 IYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELT--LEGIRQFYVAV 248
Query: 240 PECKNPSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLS 296
+ EE K L L Q +I+ N + + + + + + +F +
Sbjct: 249 EK----------EEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMH 298
Query: 297 GAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRA 356
G DQK R + F+ G R+L+TTDL ARGID V LVIN ++P Y+HR+GR+
Sbjct: 299 GDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRS 358
Query: 357 GRYGTRGLVITIVSAESLVKFHSL 380
GR+G +G+ I V+ + + + +
Sbjct: 359 GRFGRKGVAINFVTPDDIEQLKEI 382
|
Length = 401 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 205 bits (525), Expect = 3e-60
Identities = 75/205 (36%), Positives = 121/205 (59%), Gaps = 7/205 (3%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
FE ++ + + +G+ GF K +PIQ A P +L+G D I Q+++G+GK+ F++ L
Sbjct: 1 FE-ELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILE 59
Query: 82 KLIKLP-VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKR 136
KL P PQ +ILAPTRE+A+QI +V R +G H NL V GGT Q+ + KR
Sbjct: 60 KLDPSPKKDGPQALILAPTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKLKR 118
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQML 196
IVV +PGR+ +++ L++ V+ ++DEAD++++ GF + I I LP +Q L
Sbjct: 119 GPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTL 178
Query: 197 VVSATYSHDNLATLQKYMVDPLLIR 221
+ SAT + +K++ +P+ I
Sbjct: 179 LFSATMPKEVRDLARKFLRNPVRIL 203
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 1e-58
Identities = 110/356 (30%), Positives = 183/356 (51%), Gaps = 40/356 (11%)
Query: 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL-IKLPVQQPQ 92
L E G+ + +PIQ + P +L G D I Q+K+G+GK+ F + L KL +K + Q
Sbjct: 17 ANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRF--RVQ 74
Query: 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP--------VQIVVGS 144
++L PTRE+A Q+ +R + + N+ V GG P P I+VG+
Sbjct: 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGV----PMGPQIDSLEHGAHIIVGT 130
Query: 145 PGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204
PGRI ++ L++D++ ++DEAD++++ GF + I I Q P +Q L+ SATY
Sbjct: 131 PGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP- 189
Query: 205 DNLATL-QKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR---Y-VDEEKK---L 256
+ +A + Q++ DP+ ++ E P++ Y V +++ L
Sbjct: 190 EGIAAISQRFQRDPVEVKVESTH----------------DLPAIEQRFYEVSPDERLPAL 233
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+LL CV+F N + + + + L F A L G +Q+ R L F
Sbjct: 234 QRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSC 293
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
+LV TD+AARG+D ++ VIN E+ D ++HR+GR GR G++GL +++V+ E
Sbjct: 294 SVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPE 349
|
Length = 460 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (501), Expect = 6e-54
Identities = 107/352 (30%), Positives = 189/352 (53%), Gaps = 22/352 (6%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ-- 89
+ + + GF +PIQ Y L G+DAI ++++GTGK+ F+++ +N+L++ P
Sbjct: 98 LMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKE 157
Query: 90 ----QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-----I 140
+P+ +I+APTRE+ VQI ++ + L+V F+GG ++ + ++ I
Sbjct: 158 RYMGEPRALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDI 216
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM--KQMLVV 198
+V +PGR+ + +++D V + ++DEAD++++ GF+ + I Q P +Q L+
Sbjct: 217 LVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLF 276
Query: 199 SATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ 258
SAT++ D + +++ DP ++ E V+Q V + D+ K L
Sbjct: 277 SATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS--------DKYKLLYN 328
Query: 259 LLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRI 318
L++Q P+ + ++F+N + I E L A LSG Q R+ +L+ F+ GK+R+
Sbjct: 329 LVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRV 388
Query: 319 LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
LV TD+A RGI + VIN +P D Y+HR+GR GR G G+ I+
Sbjct: 389 LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAG 440
|
Length = 475 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 2e-50
Identities = 121/361 (33%), Positives = 196/361 (54%), Gaps = 33/361 (9%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D + + + L++ GF +PIQ A P L G D Q+++GTGK++ F+ A + L+
Sbjct: 12 DFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLL 71
Query: 85 KLP------VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG----TQVERP 134
P V QP+ +I+APTRE+AVQI + L + GG Q++
Sbjct: 72 SHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVL 130
Query: 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ 194
+ V I++G+ GR+ K ++N+ ++++ ++DEAD++ + GF++DI W++ ++PP Q
Sbjct: 131 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQ 190
Query: 195 ML--VVSATYSH--DNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLR 248
L + SAT S+ LA ++M +P + + PE T +K+ E PS
Sbjct: 191 RLNMLFSATLSYRVRELAF--EHMNNPEYVEVEPEQKTGHR--IKE------ELFYPS-- 238
Query: 249 YVDEEK-KLVQ-LLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
+EEK +L+Q L+ + ++ +IF+N + R E I +LA L+G QK RL
Sbjct: 239 --NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296
Query: 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI 366
L+ F RG + ILV TD+AARG+ V V N ++P D Y+HR+GR GR G G I
Sbjct: 297 ILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 356
Query: 367 T 367
+
Sbjct: 357 S 357
|
Length = 423 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 2e-49
Identities = 107/351 (30%), Positives = 192/351 (54%), Gaps = 17/351 (4%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D+ ++ PI + L + G+ K SPIQ P++LNG D + +++G+GK+ F + L+ +
Sbjct: 10 DLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN-L 68
Query: 85 KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG----TQVERPKRPVQI 140
++ PQ ++LAPTRE+AVQ+ + + H++ ++V GG Q+ ++ QI
Sbjct: 69 DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQI 128
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200
VVG+PGR+ +K L++ + ++DEAD+++ GF+ED+ I +Q+P Q + SA
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSA 188
Query: 201 TYSHDNLATLQKYMVDPLLIRPEDA--TRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ 258
T +++M +P +R + + TRP + ++ + + + LV+
Sbjct: 189 TMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYW----------TVWGMRKNEALVR 238
Query: 259 LLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRI 318
L F+ +IF + + E L + + L+G +Q R +L+ K G++ I
Sbjct: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 319 LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV 369
L+ TD+AARG+D + LV+N +IP D+ +Y+HR+GR GR G G + V
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV 349
|
Length = 629 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 2e-47
Identities = 121/369 (32%), Positives = 180/369 (48%), Gaps = 44/369 (11%)
Query: 36 LQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ---QPQ 92
LQ+ G+ + + IQ A P L+G D + + +GTGK+ F++ AL L+ P + P+
Sbjct: 16 LQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPR 75
Query: 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFI--GG----TQVERPKRPVQIVVGSPG 146
+IL PTRE+A+Q+ D R + H H+D GG E IVV +PG
Sbjct: 76 ILILTPTRELAMQVADQARELAKH---THLDIATITGGVAYMNHAEVFSENQDIVVATPG 132
Query: 147 RIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT----- 201
R+ Q IK + + +V I+DEAD++++ GF +DI I ++ KQ L+ SAT
Sbjct: 133 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDA 192
Query: 202 ---YSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK--- 255
++ L DP+ + E + R + Q R D E K
Sbjct: 193 VQDFAERLLN-------DPVEVEAEPSRRERKKIHQWY----------YRADDLEHKTAL 235
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L LL Q + ++F + R + L A YL G Q R ++ G+
Sbjct: 236 LCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGR 295
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV 375
V +LV TD+AARGID +V VIN ++P A TYLHR+GR GR G +G I++V A
Sbjct: 296 VNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHD-- 353
Query: 376 KFHSLMGEI 384
H L+G+I
Sbjct: 354 --HLLLGKI 360
|
Length = 434 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 5e-46
Identities = 115/348 (33%), Positives = 189/348 (54%), Gaps = 26/348 (7%)
Query: 35 GLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV------ 88
GL+ GF + +PIQ P L G D Q+++GTGK++ F+VA +N+L+ P
Sbjct: 23 GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKP 82
Query: 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVGS 144
+ P+ +ILAPTRE+A+QI GA + L GG Q E ++ V +++ +
Sbjct: 83 EDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIAT 141
Query: 145 PGRIKQMIKL-KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP--MKQMLVVSAT 201
PGR+ +K K +++ + + ++DEAD++ + GF++DI ++ ++P +Q L+ SAT
Sbjct: 142 PGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSAT 201
Query: 202 YSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK--LVQL 259
SH L ++M +P + E T V+Q + P+ DEEK+ L+ L
Sbjct: 202 LSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYF------PA----DEEKQTLLLGL 251
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
LS++ + ++F N + E + L + LSG QK R + L+ F++G++ IL
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
V TD+AARG+ V V N ++P DA Y+HR+GR R G G I+
Sbjct: 312 VATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359
|
Length = 572 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 1e-44
Identities = 112/365 (30%), Positives = 190/365 (52%), Gaps = 28/365 (7%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ-- 89
I + + E G+ + +PIQ A P VL G D + +++GTGK+ F + L LI
Sbjct: 12 ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71
Query: 90 --QP-QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVV 142
+P + +IL PTRE+A QI + VR ++ N+ GG Q+ + + V ++V
Sbjct: 72 GRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLV 130
Query: 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202
+PGR+ + + +D V + ++DEAD++++ GF+ DI + ++LP +Q L+ SAT+
Sbjct: 131 ATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATF 190
Query: 203 SHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK---LVQL 259
S D A +K + +PL I V Q V +VD+++K L Q+
Sbjct: 191 SDDIKALAEKLLHNPLEIEVARRNTASEQVTQHV-----------HFVDKKRKRELLSQM 239
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
+ + + Q ++F+ + + E L + + G + Q AR +L FK G +R+L
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379
V TD+AARG+D + V+N E+P+ Y+HR+GR GR G +++V V H
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC----VDEHK 355
Query: 380 LMGEI 384
L+ +I
Sbjct: 356 LLRDI 360
|
Length = 456 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 4e-43
Identities = 58/167 (34%), Positives = 101/167 (60%), Gaps = 8/167 (4%)
Query: 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAV 104
+PIQ A P +L+G D +VQ+ +G+GK++ F++ L L+ PQ ++LAPTRE+A
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQALLPKK-GGPQALVLAPTRELAE 59
Query: 105 QITDVVRSVGAHVKNLHVDYFIGGTQVER-----PKRPVQIVVGSPGRIKQMIKLKYLNM 159
QI + ++ + L V GGT ++ K I+VG+PGR+ +++ L +
Sbjct: 60 QIYEELKKLFKI-LGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGKLKL 118
Query: 160 DS-VRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHD 205
++L ++DEA +L++ GF +D+ I S+LPP +Q+L++SAT +
Sbjct: 119 LKNLKLLVLDEAHRLLDMGFGDDLEEILSRLPPDRQILLLSATLPRN 165
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 5e-41
Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 11/205 (5%)
Query: 36 LQENGFVKESPIQMAAFPYVLNGY-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTI 94
+++ GF P Q A +L+G D I+ + +G+GK++ ++ AL L + + +
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK--GGRVL 58
Query: 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-----PVQIVVGSPGRIK 149
+L PTRE+A Q + ++ +G L V GG R I+V +PGR+
Sbjct: 59 VLVPTRELAEQWAEELKKLGPS-LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLL 117
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT 209
+++ L++ +V L I+DEA +L++ GF + + + LP Q+L++SAT +
Sbjct: 118 DLLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENL 177
Query: 210 LQKYMVDPLLIRPEDATRPLLGVKQ 234
L+ ++ DP+ I PL ++Q
Sbjct: 178 LELFLNDPVFIDVGF--TPLEPIEQ 200
|
Length = 201 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 2e-35
Identities = 112/366 (30%), Positives = 184/366 (50%), Gaps = 41/366 (11%)
Query: 36 LQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ----P 91
L+ GF + +PIQ+ +P L+G D I +++G+GK++ F++ A+ + P+ + P
Sbjct: 145 LKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204
Query: 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP--------VQIVVG 143
++LAPTRE+A QI + GA K + GG PKR V+I++
Sbjct: 205 IVLVLAPTRELAEQIREQCNKFGASSK-IRNTVAYGGV----PKRGQIYALRRGVEILIA 259
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
PGR+ ++ N+ V ++DEAD++++ GF I I SQ+ P +Q L+ SAT+
Sbjct: 260 CPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP 319
Query: 204 HD--NLA-TLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK--KLVQ 258
+ +LA L K + + D T +KQ V ++ E EK KL
Sbjct: 320 KEVQSLARDLCKEEPVHVNVGSLDLT-ACHNIKQEVFVVEE----------HEKRGKLKM 368
Query: 259 LLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL + ++ +IF + + + + L + A + G + Q+ R L+ FK GK
Sbjct: 369 LLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKS 428
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV------S 370
I++ TD+A+RG+D +V VIN + P+ Y+HR+GR GR G +G T +
Sbjct: 429 PIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRL 488
Query: 371 AESLVK 376
A LVK
Sbjct: 489 ARDLVK 494
|
Length = 545 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 4e-34
Identities = 104/363 (28%), Positives = 180/363 (49%), Gaps = 29/363 (7%)
Query: 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ---- 89
L+ G+ +PIQM A P L+G +V + +G+GK+ F+V +++ +
Sbjct: 134 LNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSE 193
Query: 90 --QPQTIILAPTREIAVQITDVVRSVGAHVKNL--HVDYFIGG----TQVERPKRPVQIV 141
P ++L PTRE+ VQ+ D + +G K L +GG Q+ R ++ V+++
Sbjct: 194 QRNPLAMVLTPTRELCVQVEDQAKVLG---KGLPFKTALVVGGDAMPQQLYRIQQGVELI 250
Query: 142 VGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201
VG+PGR+ ++ + +D+V + ++DE D ++ GF + + I+ L Q+L+ SAT
Sbjct: 251 VGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSAT 309
Query: 202 YSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL- 260
S + D +LI + RP VKQL + E K +++KL +L
Sbjct: 310 VSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWV-ETKQ-------KKQKLFDILK 361
Query: 261 SQTPFNQ-CVIFSNYQLRPEVICENLANANFGAEYLS--GAQDQKARLASLDSFKRGKVR 317
S+ F V+F + +L +++ + G + LS G + K R + SF G+V
Sbjct: 362 SKQHFKPPAVVFVSSRLGADLLANAITVVT-GLKALSIHGEKSMKERREVMKSFLVGEVP 420
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377
++V T + RG+D V VI ++P+ Y+H++GRA R G +G I V+ E F
Sbjct: 421 VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLF 480
Query: 378 HSL 380
L
Sbjct: 481 PEL 483
|
Length = 518 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 7e-33
Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 8/146 (5%)
Query: 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119
D ++ + +G+GK++ ++ L L L + Q ++LAPTRE+A Q+ + ++ +
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGEGIK 59
Query: 120 LHVDYFIGGT----QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175
V Y IGGT Q + IVVG+PGR+ ++ L++ + L I+DEA +L+N
Sbjct: 60 --VGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN 117
Query: 176 TGFVEDITWIYSQLPPMKQMLVVSAT 201
GF I +LP +Q+L++SAT
Sbjct: 118 QGFGLLGLKILLKLPKDRQVLLLSAT 143
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-29
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 247 LRYVDEEKK--LVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302
+ V++EK L++LL + + +IF + + + E L L G Q+
Sbjct: 6 VLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQE 65
Query: 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR 362
R L F+ G++ +LV TD+ ARGID NV +VIN ++P ++YL R+GRAGR G +
Sbjct: 66 EREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQK 125
Query: 363 GLVITI 368
G I +
Sbjct: 126 GTAILL 131
|
Length = 131 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 1e-22
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 279 EVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI 338
E + E L L G Q+ R LD F GK+++LV TD+A RG+D VDLVI
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 339 NLEIPHDAATYLHRMGRAGRYG 360
++P A+Y+ R+GRAGR G
Sbjct: 61 IYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-21
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 285 LANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH 344
L L G Q+ R L+ F+ GK ++LV TD+A RGID +V+LVIN ++P
Sbjct: 3 LRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPW 62
Query: 345 DAATYLHRMGRAGRYG 360
+ A+Y+ R+GRAGR G
Sbjct: 63 NPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-08
Identities = 76/375 (20%), Positives = 145/375 (38%), Gaps = 93/375 (24%)
Query: 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA----PTRE 101
P Q A P + +G + ++ + +G+GK+ + +N+L+ L + + I A P +
Sbjct: 25 PPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84
Query: 102 IAVQI----TDVVRSVGAHVKNLHVDYFIGGTQVERP---KRPVQIVVGSP--------- 145
+ I + +R +G V H D Q E+ K P I++ +P
Sbjct: 85 LNNDIRRRLEEPLRELGIEVAVRHGDT----PQSEKQKMLKNPPHILITTPESLAILLNS 140
Query: 146 GRIKQMIKLKYLNMDSVRLFIMDEADKLINT--GFVEDITWIYSQLPPMKQMLVVSATYS 203
+ +++++ VR I+DE L + G QL L
Sbjct: 141 PKFRELLR-------DVRYVIVDEIHALAESKRG---------VQL-----AL------- 172
Query: 204 HDNLATLQKYMVDPLLI-------RPEDATRPLLG--VKQLVALIPECKNPSLRYVDEE- 253
+L L++ D I PE+ + L+G + + K ++ +
Sbjct: 173 --SLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVE 230
Query: 254 -------------KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLS--GA 298
+++ +L+ + +IF+N + E + L G+
Sbjct: 231 DLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRL-KKLGPDIIEVHHGS 287
Query: 299 QDQKARLASLDSFKRGKVRILVTT---DLAARGIDAANVDLVINLEIPHDAATYLHRMGR 355
++ RL + K G+++ +V T +L GID ++DLVI L P +L R+GR
Sbjct: 288 LSRELRLEVEERLKEGELKAVVATSSLEL---GIDIGDIDLVIQLGSPKSVNRFLQRIGR 344
Query: 356 AGRYGT---RGLVIT 367
AG +G++I
Sbjct: 345 AGHRLGEVSKGIIIA 359
|
Length = 814 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-07
Identities = 92/359 (25%), Positives = 150/359 (41%), Gaps = 64/359 (17%)
Query: 29 EKPIRQGLQEN-GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
E +Q LQE G+ + P Q VL+G D +V +G GKS+ + + AL
Sbjct: 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPAL------- 62
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGR 147
V T++++P + D + + G + TQ R Q+ V + R
Sbjct: 63 VLDGLTLVVSPLISLMKDQVDQLLANGVAAA------CLNSTQ----TREQQLEVMAGCR 112
Query: 148 IKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS-----ATY 202
Q IKL L+I E +L+ F+E + P +L V + +
Sbjct: 113 TGQ-IKL---------LYIAPE--RLMMDNFLEHLA----HWNPA--LLAVDEAHCISQW 154
Query: 203 SHD------NLATLQKYMVD----PLLIRPEDATR----PLLGVKQLVALIPECKNPSLR 248
HD L L++ L +D TR LLG+ + I P++R
Sbjct: 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIR 214
Query: 249 Y--VDEEKKLVQLLS--QTPFNQC-VIFSNYQLRPEVICENLANANFG-AEYLSGAQ-DQ 301
Y V++ K L QL+ Q + +I+ N + + E L + A Y +G D
Sbjct: 215 YTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDV 274
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360
+A + ++F+R ++I+V T GI+ NV V++ +IP + +Y GRAGR G
Sbjct: 275 RADVQ--EAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331
|
Length = 607 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-07
Identities = 58/342 (16%), Positives = 117/342 (34%), Gaps = 54/342 (15%)
Query: 54 YVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113
++ +G GK++V A+ +L + T++L PT+E+ Q + ++
Sbjct: 51 NRRTERRGVIVLPTGAGKTVVAA-EAIAELKR------STLVLVPTKELLDQWAEALK-- 101
Query: 114 GAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL 173
+ GG + E V + +Q++ N L I DE L
Sbjct: 102 -KFLLLNDEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGN--EFGLIIFDEVHHL 158
Query: 174 INTGFVEDITWIYSQLPPMKQMLVVSAT--YSHDNLATLQKYMVDPLL--IRPEDATRP- 228
+ I L L ++AT ++ P++ + ++
Sbjct: 159 PAPSYRR----ILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEG 214
Query: 229 -LLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFN--------------------- 266
L K + + ++ Y E + +LL
Sbjct: 215 YLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVR 274
Query: 267 ----------QCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ +IF++ I + A E ++G ++ R A L+ F+ G +
Sbjct: 275 GLLLKHARGDKTLIFASDVEHAYEIAKLF-LAPGIVEAITGETPKEEREAILERFRTGGI 333
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGR 358
++LVT + G+D + D++I L ++ R+GR R
Sbjct: 334 KVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375
|
Length = 442 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-06
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 23/154 (14%)
Query: 232 VKQLVALIPECK--NPSLRYVDEEKKLVQLLSQT----PFNQCVIFSNYQLRPEVICENL 285
++ V E +P L KL +++ + P ++ ++F+ Y+ E I + L
Sbjct: 332 FRKAVRKAKELDIEHPKLE------KLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLL 385
Query: 286 ANANFGAEYLSGAQD--------QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLV 337
A G QK ++ LD F+ G+ +LV+T +A G+D +VDLV
Sbjct: 386 EKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLV 445
Query: 338 INLE-IPHDAATYLHRMGRAGRYGTRGLVITIVS 370
I E +P + R GR GR G V+ +++
Sbjct: 446 IFYEPVP-SEIRSIQRKGRTGR-QEEGRVVVLIA 477
|
Length = 773 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-05
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 301 QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360
QK + +D F++G+ +LV T + G+D VDLVI E + R GR GR
Sbjct: 411 QKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-K 469
Query: 361 TRGLVITIVS 370
+G V+ +V+
Sbjct: 470 RKGRVVVLVT 479
|
Length = 542 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-05
Identities = 73/343 (21%), Positives = 129/343 (37%), Gaps = 63/343 (18%)
Query: 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAAL--NKLIKLPVQQPQTIILAPTREIA 103
P+Q+ VL G D V +G GKS+ + + AL + + T++++P +
Sbjct: 14 PVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGI---------TLVISPLISLM 64
Query: 104 VQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLN----M 159
+++ G F+ +Q + ++ V + IKL Y+
Sbjct: 65 EDQVLQLKASGIPAT------FLNSSQSKEQQKNVLTDLKDG-----KIKLLYVTPEKCS 113
Query: 160 DSVRLFIMDEADKLINTGFVEDITWI----------YSQLPPMKQML----VVSATYSHD 205
S RL E K I V++ I Y L +KQ +++ T +
Sbjct: 114 ASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATAS 173
Query: 206 NLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK------LVQL 259
+R ED R L +K P+L Y K L++
Sbjct: 174 P------------SVR-EDILR-QLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRF 219
Query: 260 L-SQTPFNQCVIFSNYQLRPEVICENLANANFGA-EYLSGAQDQKARLASLDSFKRGKVR 317
+ + +I+ + + E + +L N A Y +G + AR F+R +++
Sbjct: 220 IRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEI-SARDDVHHKFQRDEIQ 278
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360
++V T GI+ +V VI+ +P +Y GRAGR G
Sbjct: 279 VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDG 321
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 8e-05
Identities = 77/352 (21%), Positives = 132/352 (37%), Gaps = 56/352 (15%)
Query: 32 IRQGLQEN-GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAAL---------N 81
+Q L+ G+ P Q +VL+G D +V +G GKS+ + V AL +
Sbjct: 1 AQQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVIS 60
Query: 82 KLIKLPVQQPQTIILAPTREIAV-------QITDVVRS-VGAHVKNLHVDYFIGGTQVER 133
LI L Q + A + + D+ ++ V +K L+V
Sbjct: 61 PLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYV----------- 109
Query: 134 PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193
+P R++Q L L + L +DEA + W + P +
Sbjct: 110 ----------APERLEQDYFLNMLQRIPIALVAVDEAHCVSQ--------WGHDFRPEYQ 151
Query: 194 QMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY--VD 251
++ ++ + L R LL + I P+LR+ V
Sbjct: 152 RLGSLAERFPQVPRIALTATADAET----RQDIRELLRLADANEFITSFDRPNLRFSVVK 207
Query: 252 EEKKLVQLLS--QTPFNQC-VIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASL 308
+ K LL + Q +I+++ + + E + E L + A K R +
Sbjct: 208 KNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQ 267
Query: 309 DSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360
+ F V+++V T+ GID NV VI+ ++P + +Y GRAGR G
Sbjct: 268 EDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDG 319
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|235514 PRK05580, PRK05580, primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-04
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 21/82 (25%)
Query: 302 KARLAS-LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLH--------R 352
K L L F RG+ IL+ T + A+G D NV LV L DA L R
Sbjct: 466 KGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVL----DADLGLFSPDFRASER 521
Query: 353 M--------GRAGRYGTRGLVI 366
GRAGR G V+
Sbjct: 522 TFQLLTQVAGRAGRAEKPGEVL 543
|
Length = 679 |
| >gnl|CDD|233040 TIGR00595, priA, primosomal protein N' | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-04
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 301 QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLV------INLEIP------HDAAT 348
+ A A L+ F GK IL+ T + A+G NV LV L P
Sbjct: 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQL 357
Query: 349 YLHRMGRAGRYGTRGLVI 366
GRAGR G VI
Sbjct: 358 LTQVAGRAGRAEDPGQVI 375
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 505 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-04
Identities = 85/371 (22%), Positives = 160/371 (43%), Gaps = 68/371 (18%)
Query: 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPTREIA 103
P Q+ + L G ++ + +G+GK++ + +L L P + T+ + P R +A
Sbjct: 16 PFQLEMWAAALEGRSGLLIAPTGSGKTLAGFLPSLIDLAGPEKPKKGLHTLYITPLRALA 75
Query: 104 VQITDVVRSVGAHVKNLHVDYFIG---G--TQVERP---KRPVQIVVGSPGRIKQMIKLK 155
V D+ R++ A ++ L + + G + ER K+P I++ +P + ++
Sbjct: 76 V---DIARNLQAPIEELGLPIRVETRTGDTSSSERARQRKKPPDILLTTPESLALLLSYP 132
Query: 156 YLNMDSVRLF------IMDEADKLINT--G-FVE-DITWIYSQLPPMKQMLVVSATYSHD 205
D+ RLF ++DE +L + G +E + + +L P + +SAT
Sbjct: 133 ----DAARLFKDLRCVVVDEWHELAGSKRGDQLELALARL-RRLAPGLRRWGLSATIG-- 185
Query: 206 NLATLQKYMV-----DPLLIRPEDATRPLLGVKQLVALIPEC--KNP-----SLRYVDEE 253
NL ++ ++ +L+R + + ++L+PE + P LR + E
Sbjct: 186 NLEEARRVLLGVGGAPAVLVRGKLPKAIPV-----ISLLPESEERFPWAGHLGLRALPE- 239
Query: 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYL------SGAQDQKARLAS 307
+ + Q ++F+N + + E+ + L AN E+ G+ D++ R
Sbjct: 240 --VYAEIDQA--RTTLVFTNTRSQAELWFQALWEAN--PEFALPIALHHGSLDREQRRWV 293
Query: 308 LDSFKRGKVRILVTT---DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG-RYGTRG 363
+ G++R +V T DL G+D VDLVI + P A L R GR+ R G
Sbjct: 294 EAAMAAGRLRAVVCTSSLDL---GVDFGPVDLVIQIGSPKGVARLLQRAGRSNHRPG-EP 349
Query: 364 LVITIVSAESL 374
+V L
Sbjct: 350 SRALLVPTNRL 360
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-04
Identities = 24/92 (26%), Positives = 39/92 (42%)
Query: 279 EVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI 338
E + E L A + R +F +++++V T+ GID +V VI
Sbjct: 244 EELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI 303
Query: 339 NLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
+ ++P +Y GRAGR G I + S
Sbjct: 304 HYDLPGSIESYYQETGRAGRDGLPAEAILLYS 335
|
Length = 590 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 8e-04
Identities = 45/252 (17%), Positives = 67/252 (26%), Gaps = 21/252 (8%)
Query: 1804 SPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSRCQPKTAYQSS 1863
+ S D S S + S ++ S P A S
Sbjct: 101 AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDL-SEMLRPVGSPGPPPAASPPAAGASP 159
Query: 1864 SAQSEDGTSYKSISWDAYSVIDEPESYDVSWRTCSSESAAREKNSGQRSRGSGDKAARKS 1923
+A + D S + + S +E S A S + S R S
Sbjct: 160 AAVASDAASSRQAA-LPLSSPEETA-------RAPSSPPAEPPPSTPPAAASPRPPRRSS 211
Query: 1924 -ASLPASQIALRDGK-GDFKSPRKASHSLKDGKRYGNAQSFEAARNSNPYEAPMPGA--- 1978
S AS A G+ + +S S ++ N P P P
Sbjct: 212 PISASASSPAPAPGRSAADDAGASSSDSSS----SESSGCGWGPENECPLPRPAPITLPT 267
Query: 1979 --WQPVLEGTSVFDDAEKSSKSGPKSSKAGPKSSKPGPKSSKPGPKSSKRYPSRSGSSGL 2036
W+ SS S P+ P S PG P + S S S
Sbjct: 268 RIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG-SGPAPSSPRASSSSSSSRESSS 326
Query: 2037 NNRTEGNSVSHT 2048
++ + + S
Sbjct: 327 SSTSSSSESSRG 338
|
Length = 1352 |
| >gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 0.001
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 21/83 (25%)
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHR------------- 352
LD F G+ IL+ T + A+G D NV LV L DA T L
Sbjct: 525 DLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVL----DADTGLGSPDFRASERTFQLL 580
Query: 353 ---MGRAGRYGTRGLVITIVSAE 372
GRAGR G G V+ I +
Sbjct: 581 MQVAGRAGRAGKPGEVV-IQTYN 602
|
Length = 730 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.002
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 11/132 (8%)
Query: 1746 ESSHKRNRKANDFNDTCGAVANET---FDGEDSKGGSDD---ENNLIVTLSEAGDSEVDV 1799
+ K +D D A+E D E + D+ E N + D D+
Sbjct: 3996 DEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDL 4055
Query: 1800 EGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSRCQPKTA 1859
++ +ED N Q + EST +SDE GE V +++ + + K+
Sbjct: 4056 AEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGE-----VPEDQAIDNHPKMDAKST 4110
Query: 1860 YQSSSAQSEDGT 1871
+ S+ A E+
Sbjct: 4111 FASAEADEENTD 4122
|
Length = 4600 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.002
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 296 SGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGR 355
S +++Q+A + K G++R +V T GID VDLVI + P A+ L R+GR
Sbjct: 310 SVSKEQRAITEQ--ALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGR 367
Query: 356 AG 357
AG
Sbjct: 368 AG 369
|
Length = 1490 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.003
Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 17/180 (9%)
Query: 294 YLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR-GIDAANVDLVINLEIP-HDAATYLH 351
Y +G ++ R + FK G++ ++ T A GID ++D VI P ++
Sbjct: 344 YRAGLHREERRRIEAE-FKEGELLGVIAT-NALELGIDIGSLDAVIAYGYPGVSVLSFRQ 401
Query: 352 RMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQ 411
R GRAGR G LV+ ++ ++ L ++ E G V D +
Sbjct: 402 RAGRAGRRGQESLVLVVLRSDPLDSYYLRHPE--ELLETGFGPVESVRVDDNNEYLLDGH 459
Query: 412 TLLA-----------KPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEG 460
L A P D + E E E R + ++GAS+
Sbjct: 460 LLCADAELPLKDRELLPSDGSLEEEIARSLVGEGQLHHENDKYRPSSRGLCPREGASQVS 519
|
Length = 851 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2355 | |||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0330|consensus | 476 | 100.0 | ||
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0331|consensus | 519 | 100.0 | ||
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0338|consensus | 691 | 100.0 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0328|consensus | 400 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0326|consensus | 459 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| KOG0335|consensus | 482 | 100.0 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG4284|consensus | 980 | 100.0 | ||
| KOG0348|consensus | 708 | 100.0 | ||
| KOG0346|consensus | 569 | 100.0 | ||
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0341|consensus | 610 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| KOG0336|consensus | 629 | 100.0 | ||
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| KOG0384|consensus | 1373 | 100.0 | ||
| KOG0385|consensus | 971 | 100.0 | ||
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| KOG0339|consensus | 731 | 100.0 | ||
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| KOG0327|consensus | 397 | 100.0 | ||
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| KOG0347|consensus | 731 | 100.0 | ||
| KOG0334|consensus | 997 | 100.0 | ||
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0350|consensus | 620 | 100.0 | ||
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| KOG0386|consensus | 1157 | 100.0 | ||
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| KOG0344|consensus | 593 | 100.0 | ||
| KOG0337|consensus | 529 | 100.0 | ||
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.97 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.97 | |
| KOG0389|consensus | 941 | 99.97 | ||
| KOG0354|consensus | 746 | 99.97 | ||
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.97 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.97 | |
| KOG0387|consensus | 923 | 99.97 | ||
| KOG0952|consensus | 1230 | 99.97 | ||
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.97 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.97 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.97 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.97 | |
| KOG0329|consensus | 387 | 99.97 | ||
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.96 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.96 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.96 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.96 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.95 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.95 | |
| KOG0947|consensus | 1248 | 99.95 | ||
| KOG0351|consensus | 941 | 99.95 | ||
| KOG0388|consensus | 1185 | 99.95 | ||
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.95 | |
| KOG0951|consensus | 1674 | 99.95 | ||
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.95 | |
| KOG0392|consensus | 1549 | 99.95 | ||
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.94 | |
| KOG0391|consensus | 1958 | 99.94 | ||
| KOG1123|consensus | 776 | 99.94 | ||
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.94 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.94 | |
| KOG0948|consensus | 1041 | 99.93 | ||
| KOG0352|consensus | 641 | 99.93 | ||
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.93 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.93 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.93 | |
| KOG0353|consensus | 695 | 99.92 | ||
| KOG0349|consensus | 725 | 99.92 | ||
| PRK09694 | 878 | helicase Cas3; Provisional | 99.92 | |
| KOG0390|consensus | 776 | 99.92 | ||
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.92 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.91 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.91 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.9 | |
| KOG0950|consensus | 1008 | 99.89 | ||
| KOG1000|consensus | 689 | 99.89 | ||
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.89 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.87 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.87 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.85 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.85 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.85 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.84 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.84 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.84 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.84 | |
| KOG1002|consensus | 791 | 99.82 | ||
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.81 | |
| KOG1015|consensus | 1567 | 99.8 | ||
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.79 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.79 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.77 | |
| KOG0949|consensus | 1330 | 99.76 | ||
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.76 | |
| KOG0922|consensus | 674 | 99.75 | ||
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.75 | |
| KOG4439|consensus | 901 | 99.75 | ||
| KOG0920|consensus | 924 | 99.74 | ||
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.74 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.69 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.66 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.66 | |
| KOG0923|consensus | 902 | 99.65 | ||
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.65 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.64 | |
| KOG0924|consensus | 1042 | 99.64 | ||
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.63 | |
| KOG0926|consensus | 1172 | 99.62 | ||
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.6 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.6 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.59 | |
| KOG0951|consensus | 1674 | 99.58 | ||
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.55 | |
| KOG0953|consensus | 700 | 99.55 | ||
| KOG1016|consensus | 1387 | 99.55 | ||
| KOG4150|consensus | 1034 | 99.55 | ||
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.53 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.52 | |
| KOG0383|consensus | 696 | 99.5 | ||
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.5 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.49 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.49 | |
| KOG0925|consensus | 699 | 99.47 | ||
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.46 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.44 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.4 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.38 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.37 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.3 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.24 | |
| KOG1001|consensus | 674 | 99.19 | ||
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.16 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 99.1 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.85 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.76 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.74 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.74 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.74 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 98.65 | |
| KOG0921|consensus | 1282 | 98.61 | ||
| KOG2340|consensus | 698 | 98.56 | ||
| KOG0952|consensus | 1230 | 98.47 | ||
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.21 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.15 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.14 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.11 | |
| KOG1133|consensus | 821 | 97.9 | ||
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.87 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.84 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.75 | |
| KOG1802|consensus | 935 | 97.57 | ||
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.52 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.44 | |
| KOG0298|consensus | 1394 | 97.43 | ||
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 97.4 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 97.31 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.3 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 97.27 | |
| KOG1803|consensus | 649 | 97.12 | ||
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.04 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.84 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.74 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.73 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 96.72 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 96.62 | |
| PRK08181 | 269 | transposase; Validated | 96.54 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 96.53 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 96.53 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.52 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.48 | |
| PRK06526 | 254 | transposase; Provisional | 96.47 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 96.44 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.36 | |
| KOG1132|consensus | 945 | 96.35 | ||
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.31 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.3 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 96.24 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 96.13 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 95.98 | |
| KOG0298|consensus | 1394 | 95.95 | ||
| PHA02533 | 534 | 17 large terminase protein; Provisional | 95.87 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.54 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 95.51 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 95.44 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.34 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.27 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 95.23 | |
| KOG1131|consensus | 755 | 95.2 | ||
| KOG1513|consensus | 1300 | 95.18 | ||
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 95.18 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.08 | |
| KOG1805|consensus | 1100 | 94.83 | ||
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 94.74 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 94.72 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 94.63 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 94.62 | |
| PRK08116 | 268 | hypothetical protein; Validated | 94.58 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 94.5 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 94.49 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 94.47 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 94.41 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 94.35 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 94.24 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 94.22 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 94.19 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 94.13 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 94.12 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 94.08 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 93.95 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 93.94 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 93.92 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 93.87 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 93.78 | |
| PRK12377 | 248 | putative replication protein; Provisional | 93.69 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 93.65 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 93.64 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 93.64 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 93.62 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 93.52 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 93.3 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 93.18 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 93.14 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 93.14 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 93.07 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 93.07 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 92.8 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 92.79 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 92.75 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 92.72 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 92.71 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 92.68 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 92.55 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 92.52 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 92.43 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.43 | |
| PRK08727 | 233 | hypothetical protein; Validated | 92.36 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 92.35 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 92.31 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 92.29 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 92.27 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 92.09 | |
| KOG0989|consensus | 346 | 92.08 | ||
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 92.07 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 91.97 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 91.96 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 91.94 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 91.9 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 91.82 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 91.81 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 91.8 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 91.61 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 91.49 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 91.45 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 91.4 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 91.32 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 91.16 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 91.1 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 91.03 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 90.98 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 90.97 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 90.94 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 90.84 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 90.73 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 90.7 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 90.67 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 90.64 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 90.58 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 90.53 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 90.51 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 90.47 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 90.46 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 90.38 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 90.31 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 90.26 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 90.22 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 90.19 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 90.15 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 90.13 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 90.09 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 89.96 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 89.93 | |
| PF13173 | 128 | AAA_14: AAA domain | 89.78 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 89.73 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 89.72 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 89.71 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 89.62 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 89.57 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 89.46 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 89.44 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 89.43 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 89.41 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 89.35 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 89.28 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 89.25 | |
| PF05729 | 166 | NACHT: NACHT domain | 89.23 | |
| PF03237 | 384 | Terminase_6: Terminase-like family; InterPro: IPR0 | 89.23 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 89.21 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 89.12 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 89.01 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 88.92 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 88.89 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 88.81 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 88.81 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 88.7 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 88.59 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 88.23 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 88.15 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 88.04 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 87.92 | |
| PF02572 | 172 | CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase | 87.82 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 87.73 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 87.67 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 87.57 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 87.54 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 87.39 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 87.37 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 87.37 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 87.34 | |
| KOG0738|consensus | 491 | 87.27 | ||
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 87.19 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 87.18 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 87.17 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 87.07 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 86.92 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 86.85 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 86.74 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 86.64 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 86.63 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 86.62 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 86.58 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 86.54 | |
| KOG2028|consensus | 554 | 86.52 | ||
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 86.44 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 86.39 | |
| COG2109 | 198 | BtuR ATP:corrinoid adenosyltransferase [Coenzyme m | 86.02 | |
| PF00265 | 176 | TK: Thymidine kinase; InterPro: IPR001267 Thymidin | 85.9 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 85.87 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 85.85 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 85.78 | |
| PF02456 | 369 | Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR | 85.61 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 85.54 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 85.47 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 85.46 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 85.39 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 85.32 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 85.27 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 85.23 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 85.19 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 85.02 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 84.62 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 84.59 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 84.52 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 84.51 | |
| KOG0739|consensus | 439 | 84.22 | ||
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 84.09 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 84.04 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 83.97 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 83.6 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 83.54 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 83.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 83.24 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 83.21 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 83.2 | |
| KOG0701|consensus | 1606 | 82.99 | ||
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 82.88 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 82.44 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 82.4 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 82.29 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 82.12 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 81.63 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 81.56 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 81.55 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 81.51 | |
| PRK07413 | 382 | hypothetical protein; Validated | 81.06 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 80.91 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 80.72 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 80.62 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 80.55 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 80.54 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 80.37 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 80.33 |
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=457.74 Aligned_cols=357 Identities=31% Similarity=0.525 Sum_probs=307.2
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC------CCCCeE
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP------VQQPQT 93 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr------~qggRV 93 (2355)
..+|+++++++ +++.|...||..|+|+|.++|+.++.++++|+++|||+|||++|+++++..+.... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 46899999998 99999999999999999999999999999999999999999999999998886422 235789
Q ss_pred EEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecc
Q psy8497 94 IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDE 169 (2355)
Q Consensus 94 LILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDE 169 (2355)
|||+|+++|+.|+.+.+..+.... ++.+.+++|+..... ....++|||+||++|.+++....+.+..+.+|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 999999999999999999998777 789999998865332 223489999999999999988888899999999999
Q ss_pred cchhcccChHHHHHHHHHhCCC--CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 170 ADKLINTGFVEDITWIYSQLPP--MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 170 AHRLkN~GF~SrLeeILs~Lpp--nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
||++.+.+|...+..++..++. ..+.+++|||++......+..++..+..+.+.........+.+.+....
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~------- 238 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS------- 238 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC-------
Confidence 9999999999999999998874 4567999999998888888888888877766544433333433332211
Q ss_pred hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 248 t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
...+...|..++......++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 239 -~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~r 317 (423)
T PRK04837 239 -NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAAR 317 (423)
T ss_pred -HHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhc
Confidence 1234566777776666679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcc
Q psy8497 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINL 386 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKL 386 (2355)
|||+|++++||+||+|.++..|+||+||+||.|+.|.+|+|+...+...+..+.+.+..
T Consensus 318 GiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~ 376 (423)
T PRK04837 318 GLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGH 376 (423)
T ss_pred CCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999998877777776554443
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=458.73 Aligned_cols=356 Identities=30% Similarity=0.506 Sum_probs=312.9
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.+|..+.+.+ +++.|..+||.+|+|+|.++++.++.++++|+++|||+|||++|+++++..+.. .....++|||+||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-KRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh-ccCCceEEEEeCCH
Confidence 5799999888 999999999999999999999999999999999999999999999999998863 22345799999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc
Q psy8497 101 EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 101 ALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~ 176 (2355)
+|+.|+.+.++.+....+++++..++|+..... ....++|+|+||++|.+++....+.+..+++|||||||++.+.
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~ 162 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDM 162 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCc
Confidence 999999999999987777889999999875432 2345899999999999999888888899999999999999999
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHH
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaL 256 (2355)
+|...+..++..++...|+|++|||++.....+...++..+..+....... ...+.+.+..++.. .+...|
T Consensus 163 g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~--------~k~~~l 233 (460)
T PRK11776 163 GFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD-LPAIEQRFYEVSPD--------ERLPAL 233 (460)
T ss_pred CcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC-CCCeeEEEEEeCcH--------HHHHHH
Confidence 999999999999999999999999999988888888888887776654432 33355555444332 255667
Q ss_pred HHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccE
Q psy8497 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDL 336 (2355)
Q Consensus 257 LqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDT 336 (2355)
..++......++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 234 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 234 QRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 77777666679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccc
Q psy8497 337 VINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLD 387 (2355)
Q Consensus 337 VIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLK 387 (2355)
||+++.|.++..|+||+||+||.|..|.+++|+...+...+..+...+...
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~ 364 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRK 364 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999988877777776655443
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=461.14 Aligned_cols=357 Identities=30% Similarity=0.522 Sum_probs=308.4
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-----CCCCeEEE
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-----VQQPQTII 95 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-----~qggRVLI 95 (2355)
++|+.+.+++ |++.|.+.||..|+++|.++|+.++.++++|+.+|||+|||++|+++++..+.... ....++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 3688998888 99999999999999999999999999999999999999999999999999886422 12347999
Q ss_pred EcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 96 LVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
|+||++|+.|+.+.++.+.... ++.+..++|+..... ....++|||+||++|++++....+.+..+++|||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 9999999999999999997766 788888888865432 22348999999999999988888889999999999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhh
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD 251 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ls 251 (2355)
+|.+.+|...+..++..++...|+|++|||++..+......++..+..+.+.........+.+.+..+... .
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~--------~ 231 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKK--------R 231 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHH--------H
Confidence 99999999999999999999999999999999888888888888887766554444444455554443321 2
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 252 EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 252 KkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
+...|..++......++||||+++..++.|++.|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+
T Consensus 232 k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 232 KRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred HHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 33455566666666799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccc
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLD 387 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLK 387 (2355)
|++++||+|++|.++..|+||+||+||.|..|.+++|+...+...+..+.+.+..+
T Consensus 312 p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988887777776654443
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=448.84 Aligned_cols=365 Identities=28% Similarity=0.471 Sum_probs=336.2
Q ss_pred cccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCe
Q psy8497 14 VLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQ 92 (2355)
Q Consensus 14 ~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggR 92 (2355)
..-..+...+|.++.+.+ +++.|+..||..|+++|.++||.+++|++||..++||+|||.+|++||+..|.+.+ ....
T Consensus 53 ~~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~~~~ 131 (476)
T KOG0330|consen 53 EMQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-KLFF 131 (476)
T ss_pred hhhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-CCce
Confidence 344467788999999999 99999999999999999999999999999999999999999999999999999643 4588
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHH-hhcccCcCceEEEe
Q psy8497 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIK-LKYLNMDSVRLFIM 167 (2355)
Q Consensus 93 VLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLd-rr~LdLSkIdLLIV 167 (2355)
+|||+|+++|+.|+.+.++.++... ++++.++.|+.... ...+.++|||+||.+|.+++. .+.+.+..+.++|+
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 9999999999999999999998888 99999999997654 344569999999999999998 57788999999999
Q ss_pred cccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 168 DEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
|||++|++..|...+.+|+..+|...|++++|||++..+.++....+..|..+........+..+.|.+.+++...
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~---- 286 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD---- 286 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc----
Confidence 9999999999999999999999999999999999999999998888999999999888888888899888887652
Q ss_pred hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 248 t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
+...|+.+|.......+||||++...++.++-.|...|+.+..|||.|++..|.-+++.|++|...|||||+++.+
T Consensus 287 ----K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSR 362 (476)
T KOG0330|consen 287 ----KDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASR 362 (476)
T ss_pred ----cchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcc
Confidence 3355888888777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
|||+|.|++||+||.|.+..+||+|+||++|.|..|.+|.|++.-+++.+.+|...+..++
T Consensus 363 GLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 363 GLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred cCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999988877666655
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=467.01 Aligned_cols=357 Identities=28% Similarity=0.473 Sum_probs=303.2
Q ss_pred CcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc----CCCCC
Q psy8497 17 NIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL----PVQQP 91 (2355)
Q Consensus 17 siDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek----r~qgg 91 (2355)
.+.++.+|+++.+++ |++.|...||.+|+|+|.++|+.+++++++|+++|||+|||++|+++++..+... ...++
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 457788999999888 9999999999999999999999999999999999999999999999998877632 12467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEe
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIM 167 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIV 167 (2355)
.+|||+||++|+.|+.+.+.+|.... .+++.+++|+..... ....++|||+||++|.+++......+..+.+|||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 89999999999999999999998766 788888888865432 2234899999999999999888888899999999
Q ss_pred cccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhcc-CCeeeccCCCc-cccccceEEEEeccCCCCC
Q psy8497 168 DEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV-DPLLIRPEDAT-RPLLGVKQLVALIPECKNP 245 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLr-dPvIIrVesee-~~~seVrQvVvqVpe~kn~ 245 (2355)
||||+|.+.+|...+..++..+++..|+|++|||++..+..+...++. .++.+.+.... .....+.+.+..+...
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~--- 360 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH--- 360 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech---
Confidence 999999999999999999999999999999999999888777777765 35554443322 1223344444443321
Q ss_pred cchhhhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec
Q psy8497 246 SLRYVDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323 (2355)
Q Consensus 246 sLt~lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS 323 (2355)
.+...|..++... ...++||||++++.++.|+..|...++.+..+||+|++.+|..+++.|++|.+.|||||+
T Consensus 361 -----~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd 435 (545)
T PTZ00110 361 -----EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD 435 (545)
T ss_pred -----hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc
Confidence 2334455555443 356999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 324 LAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 324 ALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
++++|||+|++++||+||+|.++..|+||+||+||.|..|.+++|+...+......+.+
T Consensus 436 v~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 436 VASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887766655544
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=466.74 Aligned_cols=355 Identities=30% Similarity=0.522 Sum_probs=312.0
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh-----cCCCCCeEEEE
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-----LPVQQPQTIIL 96 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e-----kr~qggRVLIL 96 (2355)
.|..+.+.+ +.+.|+..||..|+|+|.++|+.++.|+++|..+.||+|||++|++|++.+|.. ....++.+|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 788888888 999999999999999999999999999999999999999999999999999985 14457889999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
+|||+||.|+...+.++.... .++..+++|+.....+ .+.++|+|+||.+|.+++....+.+..+.++|+|||++
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 999999999999999998887 6889999999876644 34499999999999999999999999999999999999
Q ss_pred hcccChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCc--cccccceEEEEeccCCCCCcchh
Q psy8497 173 LINTGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDAT--RPLLGVKQLVALIPECKNPSLRY 249 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee--~~~seVrQvVvqVpe~kn~sLt~ 249 (2355)
|++.+|..++..|+..+ ++..|+|++|||++.++..+...+|.++..+.+.... .....+.|++..++.. ..
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~-----~K 325 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDET-----AK 325 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHH-----HH
Confidence 99999999999999999 5566899999999999999999999988887776543 3444556666555532 12
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccccc
Q psy8497 250 VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGI 329 (2355)
Q Consensus 250 lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGL 329 (2355)
..++..++..+......||||||.+++.|+.|+..|...++.+..|||++++.+|..+|+.|++|.+.|||||+++++||
T Consensus 326 ~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 326 LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 22233333333334557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh
Q psy8497 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 330 DLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
|+|+|++||+||+|.+.+.|+||+||+||.|+.|.++.|+...+......+.+.
T Consensus 406 Di~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~ 459 (519)
T KOG0331|consen 406 DVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKV 459 (519)
T ss_pred CCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988777666655544
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=468.47 Aligned_cols=360 Identities=29% Similarity=0.505 Sum_probs=317.8
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
..+|.++.+++ |++.|..+||.+|+|+|.++|+.++.++++|+.+|||+|||++|+++++..+.. ....+++||||||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-~~~~~~~LIL~PT 83 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-ELKAPQILVLAPT 83 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh-ccCCCeEEEEeCc
Confidence 44699998888 999999999999999999999999999999999999999999999999988763 2345789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+.|+.+.+..+....+++.++.++|+..... ....++|||+||++|++++....+.+..+.+|||||||.|++
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~ 163 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR 163 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhh
Confidence 9999999999999988878899999999875432 233489999999999999988888899999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
.+|...+..++..++...|++++|||++..+......++.++..+.+.........+.+.+..+.. ..+...
T Consensus 164 ~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~--------~~k~~~ 235 (629)
T PRK11634 164 MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG--------MRKNEA 235 (629)
T ss_pred cccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech--------hhHHHH
Confidence 999999999999999999999999999998888888999888777666554444455555444332 234566
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
|..++......++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|.++
T Consensus 236 L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 77777776667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccc
Q psy8497 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHA 389 (2355)
Q Consensus 336 TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLa 389 (2355)
+||+||.|.++..|+||+||+||.|+.|.+|+|+...+...+..+.+.++..+.
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~ 369 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999998888888888776666553
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=446.78 Aligned_cols=352 Identities=32% Similarity=0.513 Sum_probs=302.6
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC---CCCCeEEEEcc
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP---VQQPQTIILAP 98 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr---~qggRVLILVP 98 (2355)
+|+.+.+.+ |++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.... ....++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 689999888 99999999999999999999999999999999999999999999999998886421 23468999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
+++|+.|+.+++..+.... ++.+..++|+..... ....++|||+||++|++++....+.+..+++|||||||++.
T Consensus 82 t~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 9999999999999998776 789999999875432 22347899999999999998888888999999999999999
Q ss_pred ccChHHHHHHHHHhCCCCceEEEEEeccChh-HHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHH
Q psy8497 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHD-NLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEE 253 (2355)
Q Consensus 175 N~GF~SrLeeILs~LppnrQILLLSATLS~E-ILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKk 253 (2355)
+++|...+..+...++...|++++|||+... +..+...++..+..+...........+.+.+..+... ..+.
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-------~~k~ 233 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL-------EHKT 233 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH-------HHHH
Confidence 9999999999999998889999999999854 4455566667777666554444444455554443321 2344
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
..|..++......++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 234 ~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~ 313 (434)
T PRK11192 234 ALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDD 313 (434)
T ss_pred HHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCC
Confidence 56666666656679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+++||+||.|.++..|+||+||+||.|..|.+++|+...+...+..+.+
T Consensus 314 v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 314 VSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred CCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998777666665543
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=463.99 Aligned_cols=360 Identities=35% Similarity=0.581 Sum_probs=323.6
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCe-EEEEcc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQ-TIILAP 98 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggR-VLILVP 98 (2355)
...|.++.+.+ +++.|...||..|+|+|..++|.++.++++|+.++||+|||++|++|++..+......... +|||+|
T Consensus 28 ~~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 28 PPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 46799999888 9999999999999999999999999999999999999999999999999997731122222 999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
|++||.|+.+.+..+....+.+++.+++|+.....+ ...++|||+||.+|++++....+.+..+.++|+|||++|+
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRML 187 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhh
Confidence 999999999999999887767889999999765432 2239999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCcc--ccccceEEEEeccCCCCCcchhhhH
Q psy8497 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATR--PLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 175 N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~--~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
+.+|...+..|+..++...|++++|||++..+..+...++.+|..+.+..... ....+.+.+..+.... .+
T Consensus 188 d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~-------~k 260 (513)
T COG0513 188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE-------EK 260 (513)
T ss_pred cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH-------HH
Confidence 99999999999999999999999999999988899999999998887774444 6777888888876541 46
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...|..++......++||||+++..++.|+..|...|+++..|||+|++.+|.++++.|++|.++|||||+++++|||+|
T Consensus 261 ~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 261 LELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred HHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcc
Confidence 77888888877777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc-CHHHHHHHHHhhccc
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE-SLVKFHSLMGEINLD 387 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd-DVEeIEsLrReLKLK 387 (2355)
.+++||+||.|.++..|+||+||+||.|..|.+|.|+... +...+..+...+...
T Consensus 341 ~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 341 DVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred ccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999875 777777777664443
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=463.55 Aligned_cols=355 Identities=31% Similarity=0.539 Sum_probs=304.8
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC------CCCCeEE
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP------VQQPQTI 94 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr------~qggRVL 94 (2355)
.+|.++.+.+ |++.|...||..|+|+|.++|+.++.++|+|+.+|||+|||++|+++++..|.... ....++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999988 99999999999999999999999999999999999999999999999999886321 1246899
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhh-cccCcCceEEEecc
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLK-YLNMDSVRLFIMDE 169 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr-~LdLSkIdLLIVDE 169 (2355)
||+|+++|+.|+.+.+.+|+... ++.+..++|+..... ....++|||+||++|++++... .+.+..+++|||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999998776 789999999875432 2234799999999999888764 46688899999999
Q ss_pred cchhcccChHHHHHHHHHhCCC--CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 170 ADKLINTGFVEDITWIYSQLPP--MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 170 AHRLkN~GF~SrLeeILs~Lpp--nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
||+|.+.+|...+..++..++. ..|+|++|||++..+...+..++..+..+...........+.+.+....
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~------- 240 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA------- 240 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC-------
Confidence 9999999999999999999876 6799999999999888888888887766555443333334444443322
Q ss_pred hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 248 t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
...+...|+.++......++||||+++..++.|++.|...++.+..|||+|+..+|..+++.|++|+++|||||+++++
T Consensus 241 -~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ar 319 (572)
T PRK04537 241 -DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAAR 319 (572)
T ss_pred -HHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhc
Confidence 1234566777777766779999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
|||+|.+++||+||.|+++..|+||+||+||.|..+.+|+|+...+...+..+...+.
T Consensus 320 GIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 320 GLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred CCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998877666666655443
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-47 Score=457.03 Aligned_cols=357 Identities=27% Similarity=0.483 Sum_probs=306.3
Q ss_pred CcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc------CCC
Q psy8497 17 NIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL------PVQ 89 (2355)
Q Consensus 17 siDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek------r~q 89 (2355)
.+.++.+|+.+.+++ |++.|...||..|+|+|.++|+.++.++++|+++|||+|||++|+++++..+... ...
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 457899999999888 9999999999999999999999999999999999999999999999999877531 124
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEE
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLF 165 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLL 165 (2355)
++.+|||+||++|+.|+.+.++.+.... ++.++.++|+..... ....++|||+||++|.+++....+.+..+.+|
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 6789999999999999999999987766 677777887764332 23448999999999999998888889999999
Q ss_pred EecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCC
Q psy8497 166 IMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245 (2355)
Q Consensus 166 IVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~ 245 (2355)
||||||+|.+.+|...+..++..++ ..|++++|||++..+..+...++..+..+...........+.+...++...
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~--- 350 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETK--- 350 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccch---
Confidence 9999999999999999999998885 689999999999988888888888887777665554445556665555432
Q ss_pred cchhhhHHHHHHHHHhcCC--CCeEEEEEcccccHHHHHHHHHh-cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe
Q psy8497 246 SLRYVDEEKKLVQLLSQTP--FNQCVIFSNYQLRPEVICENLAN-ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322 (2355)
Q Consensus 246 sLt~lsKkeaLLqLLerl~--kgRVLVFSQTRKmAEiLADyLrE-rGIKVarLHGgMSqEERqeILErFRSGEIdVLVST 322 (2355)
.+...|..++.... ..++||||+++..++.|+..|.. .++.+..+||+|+..+|..+++.|++|+++|||||
T Consensus 351 -----~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaT 425 (518)
T PLN00206 351 -----QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVAT 425 (518)
T ss_pred -----hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEe
Confidence 23445666665432 25899999999999999999975 58999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh
Q psy8497 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 323 SALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
+++++|||+|.+++||+||+|.++.+|+||+|||||.|..|.+++|+...+...+..+...
T Consensus 426 dvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~ 486 (518)
T PLN00206 426 GVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVAL 486 (518)
T ss_pred cHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988777666666544
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=447.79 Aligned_cols=360 Identities=30% Similarity=0.544 Sum_probs=307.5
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC------CCC
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV------QQP 91 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~------qgg 91 (2355)
+....|..+.+.+ |++.|...||..|+++|.++++.+++|+++|+.+|||+|||++|+++++..+..... ...
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3456788888888 999999999999999999999999999999999999999999999999998875321 146
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC-----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEE
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFI 166 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLI 166 (2355)
++|||+||++|+.|+.+.++.+.... ++.+..++|+..... ....++|||+||++|+.++......+..+++||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 89999999999999999999997766 788999998754321 123489999999999988887777889999999
Q ss_pred ecccchhcccChHHHHHHHHHhCCC--CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCC
Q psy8497 167 MDEADKLINTGFVEDITWIYSQLPP--MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKN 244 (2355)
Q Consensus 167 VDEAHRLkN~GF~SrLeeILs~Lpp--nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn 244 (2355)
|||+|++.+.+|...+..++..++. ..|+|++|||+.......+..++..+..+.+.........+.+.+..+...
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-- 320 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS-- 320 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch--
Confidence 9999999999999999999988864 569999999999888888888888887776655444334444444333221
Q ss_pred CcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc
Q psy8497 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324 (2355)
Q Consensus 245 ~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA 324 (2355)
.+...|..++......++||||+++..++.|+..|...++.+..+||+|+..+|.++++.|++|++.|||||++
T Consensus 321 ------~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~ 394 (475)
T PRK01297 321 ------DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDV 394 (475)
T ss_pred ------hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccc
Confidence 23455666776666679999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccc
Q psy8497 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLD 387 (2355)
Q Consensus 325 LGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLK 387 (2355)
+++|||+|++++||+++.|.+..+|+||+|||||.|+.|.+|+|+..++...+..+...+..+
T Consensus 395 l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 395 AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred cccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999888776666665554444
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=449.53 Aligned_cols=373 Identities=25% Similarity=0.436 Sum_probs=328.7
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC--CCCCeEEEEc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP--VQQPQTIILA 97 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr--~qggRVLILV 97 (2355)
..+|.+++++- |+++|..+||..|+|+|..+||..+-|++++.||.||+|||.+|++|+|.+|.-.+ ....+|||||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 45899999987 99999999999999999999999999999999999999999999999999998533 3456899999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHh-hcccCcCceEEEecccch
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdr-r~LdLSkIdLLIVDEAHR 172 (2355)
||++|+.|+....+++..+. .+.+.+..|+-....+ ...++|||+||++|.+++.. ..+.+.++.+||+|||++
T Consensus 260 PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999999999998888 7999999999766533 33499999999999998876 567899999999999999
Q ss_pred hcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 173 LINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
|++.+|...+..|+..++...|.+++|||+...+..++..-|..|+.+.+.........+.|.++.+..... ...
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re-----~dR 413 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKRE-----GDR 413 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccc-----ccc
Confidence 999999999999999999999999999999999999999999999999998887777777776665543321 123
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...|..++......++|||+.+++.|..|.-.|--.|+++.-|||.+++.+|...++.|++.+++|||||+++.+||||+
T Consensus 414 ea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 414 EAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIE 493 (691)
T ss_pred HHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcc
Confidence 34455666666667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc-cccccccCCCccch
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN-LDHAFNVGLVPDNL 399 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK-LKLaLe~eIVPkgL 399 (2355)
.|.+||+|++|.+...|++|+||++|.|+.|..|.|+...+..++..+..... ..-.+...++|..+
T Consensus 494 gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~ 561 (691)
T KOG0338|consen 494 GVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEV 561 (691)
T ss_pred ceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHH
Confidence 99999999999999999999999999999999999999999999888876532 22334455555543
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=431.07 Aligned_cols=359 Identities=34% Similarity=0.567 Sum_probs=306.1
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
+.+|+.+.+.+ +.+.|...||..|+|+|.++++.++.++++|+++|||+|||++|+++++..+.. .....++|||+|+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-~~~~~~~lil~Pt 105 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-DLNACQALILAPT 105 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-CCCCceEEEECCC
Confidence 67899999888 999999999999999999999999999999999999999999999999987652 2346789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+.|+.+.+..++... .+.+....|+..... .....+|+|+||+.|.+++....+.+..+++|||||+|++.+
T Consensus 106 ~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~ 184 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLS 184 (401)
T ss_pred HHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHh
Confidence 999999999999987655 677777777754321 223378999999999999888777889999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
.++...+..++..+++..|+|++|||++.........++..+..+...........+.+.+..+... ......
T Consensus 185 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 257 (401)
T PTZ00424 185 RGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKE-------EWKFDT 257 (401)
T ss_pred cchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChH-------HHHHHH
Confidence 8898899999999999999999999999888888888887776655544333344444444433321 123345
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
+..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 258 l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 258 LCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 56666665667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 336 TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
+||+++.|.+...|+||+|||||.|..|.+++|+...+...+..+.+.+...+
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~ 390 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQI 390 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcc
Confidence 99999999999999999999999999999999999888888777766555443
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=417.90 Aligned_cols=368 Identities=35% Similarity=0.575 Sum_probs=338.1
Q ss_pred cCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEE
Q psy8497 16 SNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTI 94 (2355)
Q Consensus 16 SsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVL 94 (2355)
..+.++.+|+.+++++ +++++++.||..|..+|+.|++.+++|+++|.++..|+|||.+|.+.+|..+. ......++|
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d-~~~r~tQ~l 99 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLD-ISVRETQAL 99 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecc-cccceeeEE
Confidence 4567899999999999 99999999999999999999999999999999999999999998888886654 234457899
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCC----CCcEEEECHHHHHHHHHhhcccCcCceEEEeccc
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR----PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEA 170 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqir----q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEA 170 (2355)
||.||++|+.|+.+.+..++... ++++....|+......++ ..+|+.+||.++++++++..+....+.+||+||+
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA 178 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH
Confidence 99999999999999999998888 899999999987554433 3889999999999999999999999999999999
Q ss_pred chhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhh
Q psy8497 171 DKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250 (2355)
Q Consensus 171 HRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~l 250 (2355)
+.|++.+|..++..++..+|+..|++++|||++.++++...+|+.+|+.+.+.........++++++.+... .
T Consensus 179 DemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~E-------e 251 (400)
T KOG0328|consen 179 DEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKE-------E 251 (400)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechh-------h
Confidence 999999999999999999999999999999999999999999999999999999998888899998877655 2
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccC
Q psy8497 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGID 330 (2355)
Q Consensus 251 sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLD 330 (2355)
.+...|..+.......+++|||++++.++.|.+.|.+..+.+..+||+|+++||..++..|++|..+|||+|++-++|||
T Consensus 252 wKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiD 331 (400)
T KOG0328|consen 252 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGID 331 (400)
T ss_pred hhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCC
Confidence 25567788877777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccccccc
Q psy8497 331 AANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNV 392 (2355)
Q Consensus 331 LPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~ 392 (2355)
+|.|.+||+||.|.+.+.|++||||+||.|++|.+|-|+..++...+..+.+.+.......+
T Consensus 332 v~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp 393 (400)
T KOG0328|consen 332 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMP 393 (400)
T ss_pred cceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999887776654433
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=428.15 Aligned_cols=357 Identities=30% Similarity=0.490 Sum_probs=330.3
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc--------CC
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--------PV 88 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek--------r~ 88 (2355)
..++..|++.+++. +++.+...||..|+|+|..+++.+++.+++|..++||+|||.+|+++++.++... ..
T Consensus 241 pnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 241 PNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred CccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 47899999999887 9999999999999999999999999999999999999999999999999887642 24
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceE
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRL 164 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdL 164 (2355)
.++.++||+||++|++|+.+.-.+|+..+ +++++.++|+...+.+ ...+.|+|+||.+|++.+....+-+.++.+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qcty 399 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTY 399 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCce
Confidence 57899999999999999999999999888 7999999999876543 334999999999999999999999999999
Q ss_pred EEecccchhcccChHHHHHHHHHhCCCC-------------------------ceEEEEEeccChhHHHHHHHhccCCee
Q psy8497 165 FIMDEADKLINTGFVEDITWIYSQLPPM-------------------------KQMLVVSATYSHDNLATLQKYMVDPLL 219 (2355)
Q Consensus 165 LIVDEAHRLkN~GF~SrLeeILs~Lppn-------------------------rQILLLSATLS~EILElLkKfLrdPvI 219 (2355)
||+|||++|.+.+|...+..++..+|.. .|.++||||+++.+..++..||..|+.
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 9999999999999999999999998631 589999999999999999999999999
Q ss_pred eccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCC
Q psy8497 220 IRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQ 299 (2355)
Q Consensus 220 IrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgM 299 (2355)
+.+.....+...++|.+..+... .+...|..+|......++|||+++++.|+.|++.|.+.|+.+..|||+-
T Consensus 480 vtig~~gk~~~rveQ~v~m~~ed--------~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k 551 (673)
T KOG0333|consen 480 VTIGSAGKPTPRVEQKVEMVSED--------EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGK 551 (673)
T ss_pred EEeccCCCCccchheEEEEecch--------HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCc
Confidence 99999999999999999888776 4578888999888667999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHH
Q psy8497 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379 (2355)
Q Consensus 300 SqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEs 379 (2355)
++++|..+|..|+++..+|||||+++++|||+|+|.+||+||++.+...|++||||+||.|+.|.++.|++..+...+..
T Consensus 552 ~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 552 SQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYD 631 (673)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877776
Q ss_pred HHHh
Q psy8497 380 LMGE 383 (2355)
Q Consensus 380 LrRe 383 (2355)
+.+.
T Consensus 632 Lkq~ 635 (673)
T KOG0333|consen 632 LKQA 635 (673)
T ss_pred HHHH
Confidence 6553
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=412.29 Aligned_cols=351 Identities=27% Similarity=0.468 Sum_probs=307.7
Q ss_pred cCcccCCcH--H-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCC--eEE
Q psy8497 22 FENDVLIEK--P-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQP--QTI 94 (2355)
Q Consensus 22 ~SFEeLlLk--p-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek--r~qgg--RVL 94 (2355)
..|+++..+ + |+..+...||...+|+|..+||.++.++++++.++||+|||++|++|++..+... ..+.. .+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 456666655 6 9999999999999999999999999999999999999999999999999999532 22233 589
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC-----CCCcEEEECHHHHHHHHHhhc--ccCcCceEEEe
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK-----RPVQIVVGSPGRIKQMIKLKY--LNMDSVRLFIM 167 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi-----rq~DILVTTPErLLDLLdrr~--LdLSkIdLLIV 167 (2355)
||+||++|+.|+.+.+..|...++.+++.+++|+....... ..++|+|+||++|.+++.... +.+..+.+||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 99999999999999999999888999999999997665433 238899999999999998743 44569999999
Q ss_pred cccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCcc--ccccceEEEEeccCCCCC
Q psy8497 168 DEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATR--PLLGVKQLVALIPECKNP 245 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~--~~seVrQvVvqVpe~kn~ 245 (2355)
|||++|++.+|...+..|+..+|.+.++-++|||...++..+....|.+|+.+.+..... .+..+...+..+...
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~--- 240 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD--- 240 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH---
Confidence 999999999999999999999999999999999999999999999999999988887665 444455555555433
Q ss_pred cchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec
Q psy8497 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323 (2355)
Q Consensus 246 sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS 323 (2355)
.+...|+.+|......++|||.+|...++.....|... ...+..+||.|.+..|..+++.|.+..-.||+||+
T Consensus 241 -----eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TD 315 (567)
T KOG0345|consen 241 -----EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD 315 (567)
T ss_pred -----HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeeh
Confidence 46688899998888889999999999999988888764 57889999999999999999999998888999999
Q ss_pred ccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 324 LAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 324 ALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
++++|||||++++||+||+|.++..++||+||++|.|..|.+|+|+.+.+..+++-+
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988554444433
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-44 Score=402.40 Aligned_cols=370 Identities=32% Similarity=0.500 Sum_probs=335.5
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
--+-.+|+++.++. |+.++...||..|.|+|+++||.++.|++++..+..|+|||-+|++|+|+.+. .....-+++|+
T Consensus 81 ~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid-~~~~~IQ~~il 159 (459)
T KOG0326|consen 81 ATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID-PKKNVIQAIIL 159 (459)
T ss_pred cccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC-ccccceeEEEE
Confidence 34567899999998 99999999999999999999999999999999999999999999999998876 33456679999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
||+++||.|+.+.+.++.+.. ++.+.+.+|+...+..+ ..++|+|+||.+++++..+....+..+.++|+|||+.
T Consensus 160 VPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred eecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 999999999999999999988 79999999998876543 3489999999999999999999999999999999999
Q ss_pred hcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 173 LINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
|++..|...+..++..+|...|++++|||.+..+..++.++|.+|+.+....+ .....+.|++.++.+. .+
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~--------qK 309 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEER--------QK 309 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechh--------hh
Confidence 99999999999999999999999999999999999999999999999887654 4566788888887665 23
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
..-|-.++.+....+.||||++...++.|+..+.+.|+.+.++|+.|.+++|.+++..|++|.++.||||+.+.+|||++
T Consensus 310 vhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiq 389 (459)
T KOG0326|consen 310 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQ 389 (459)
T ss_pred hhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccc
Confidence 34455556666667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccCCCccc
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDN 398 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~eIVPkg 398 (2355)
++++||+||.|.+++.|++||||+||.|..|.+|.++.-.+...+..+.++++.++.-.+..+.+.
T Consensus 390 avNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk~ 455 (459)
T KOG0326|consen 390 AVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDKS 455 (459)
T ss_pred eeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCCcc
Confidence 999999999999999999999999999999999999999999999999999988876655555443
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=414.85 Aligned_cols=368 Identities=26% Similarity=0.440 Sum_probs=325.8
Q ss_pred hhhhccccccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy8497 7 KCARTKDVLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK 85 (2355)
Q Consensus 7 sr~rTk~~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e 85 (2355)
+.+.++...-....+..|.+++++. .+++|...+|..++.+|.++|+..++|+++|-++-||+|||++|++|+|+.|..
T Consensus 54 ~~l~~ky~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r 133 (758)
T KOG0343|consen 54 EELKQKYAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYR 133 (758)
T ss_pred HHHHHHHHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHH
Confidence 3344444333466788999999999 999999999999999999999999999999999999999999999999999874
Q ss_pred ---cCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhh-ccc
Q psy8497 86 ---LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLK-YLN 158 (2355)
Q Consensus 86 ---kr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr-~Ld 158 (2355)
....+.-+|||.||++||.|+++.+.+++... .+...+++|+..... .+...+||||||++|+.+++.. .+.
T Consensus 134 ~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~ 212 (758)
T KOG0343|consen 134 LKWSPTDGLGALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFS 212 (758)
T ss_pred cCCCCCCCceeEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCC
Confidence 34567789999999999999999999998887 899999999987553 3445899999999999988764 456
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCC--ccccccceEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDA--TRPLLGVKQLV 236 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVese--e~~~seVrQvV 236 (2355)
-..+.+||+|||+++++++|...+..|++.+|+..|+|++|||....+..++...+.+|.++.+-.. ...+..++|.+
T Consensus 213 t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y 292 (758)
T KOG0343|consen 213 TSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSY 292 (758)
T ss_pred CCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheE
Confidence 7889999999999999999999999999999999999999999999999999988999988877632 34566778888
Q ss_pred EeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCC
Q psy8497 237 ALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRG 314 (2355)
Q Consensus 237 vqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSG 314 (2355)
..++.. .++..|..++......+.|||+.+.+++..++..+... |+.+..|||.|.+..|..+...|...
T Consensus 293 ~~v~l~--------~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~ 364 (758)
T KOG0343|consen 293 VIVPLE--------DKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK 364 (758)
T ss_pred EEEehh--------hHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh
Confidence 877665 46788888888888889999999999999999999875 78889999999999999999999999
Q ss_pred CccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh
Q psy8497 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 315 EIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
.-.||+||+++++|||+|.|+.||.+|.|-+...||+|+||++|....|.+++++.+.+.+++...++.
T Consensus 365 ~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 365 RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999886655544444
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=405.20 Aligned_cols=358 Identities=27% Similarity=0.432 Sum_probs=314.3
Q ss_pred cCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc---CCCCC
Q psy8497 16 SNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL---PVQQP 91 (2355)
Q Consensus 16 SsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek---r~qgg 91 (2355)
+++.....|+...+++ ++++|..+||.+++++|...|+.++.++++++.|-||+|||++|++++++.+... ...+.
T Consensus 76 ~s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~ 155 (543)
T KOG0342|consen 76 DSITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGT 155 (543)
T ss_pred cchhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCe
Confidence 3456678899999999 9999999999999999999999999999999999999999999999999998852 33566
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhh-cccCcCceEEE
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLK-YLNMDSVRLFI 166 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr-~LdLSkIdLLI 166 (2355)
.+||||||++|+.|++..++++....+.+.+.++.|+.... .....++|+|+||++|+++++.. .+......++|
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 79999999999999999999999999899999999997654 23346999999999999999873 33456678999
Q ss_pred ecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccC-CeeeccCCC--ccccccceEEEEeccCCC
Q psy8497 167 MDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVD-PLLIRPEDA--TRPLLGVKQLVALIPECK 243 (2355)
Q Consensus 167 VDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrd-PvIIrVese--e~~~seVrQvVvqVpe~k 243 (2355)
+|||+++++.+|...+..|+..++...|.+++|||.+..+.+.....|.. +..+..... ......+.|.+...+...
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 99999999999999999999999999999999999999998888866654 666655543 334456777777766653
Q ss_pred CCcchhhhHHHHHHHHHhcCCC-CeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe
Q psy8497 244 NPSLRYVDEEKKLVQLLSQTPF-NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322 (2355)
Q Consensus 244 n~sLt~lsKkeaLLqLLerl~k-gRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST 322 (2355)
. ...|+.+|.+... .+|||||.|......+++.|.+..+.|.-|||++++..|..+...|++.+.-|||||
T Consensus 316 ~--------f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cT 387 (543)
T KOG0342|consen 316 R--------FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCT 387 (543)
T ss_pred h--------HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEec
Confidence 2 3345555555544 699999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHH
Q psy8497 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 323 SALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLr 381 (2355)
+++++|||+|+|+.||.||+|.++.+||+|+||++|.|+.|..++++.+.+...+..+.
T Consensus 388 DVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 388 DVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred chhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998888887776
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=385.75 Aligned_cols=362 Identities=29% Similarity=0.439 Sum_probs=312.9
Q ss_pred cccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 20 VLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 20 kV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
....|.++++.+ +.+-|.++|+..++|+|..+||.|+.|++||-+|.||+|||.+|.+++|+.|.+.+ .+-.+|||.|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-~giFalvlTP 83 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-YGIFALVLTP 83 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-CcceEEEecc
Confidence 456899999999 99999999999999999999999999999999999999999999999999998543 4567999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhh----cccCcCceEEEeccc
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLK----YLNMDSVRLFIMDEA 170 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr----~LdLSkIdLLIVDEA 170 (2355)
|++|+.|+.+.|..++... ++++.+++|+...- .....+||||+||++|.+++... .+.+..+.++|+|||
T Consensus 84 TrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA 162 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA 162 (442)
T ss_pred hHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecch
Confidence 9999999999999998777 99999999997543 23345999999999999888754 345788899999999
Q ss_pred chhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccC--CeeeccCCCccccccceEEEEeccCCCCCcch
Q psy8497 171 DKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVD--PLLIRPEDATRPLLGVKQLVALIPECKNPSLR 248 (2355)
Q Consensus 171 HRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrd--PvIIrVesee~~~seVrQvVvqVpe~kn~sLt 248 (2355)
+++++..|...+..+...+|...|.++||||+...+.+...--... .+.+...........+.+.+..++..
T Consensus 163 DrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~------ 236 (442)
T KOG0340|consen 163 DRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSID------ 236 (442)
T ss_pred hhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchh------
Confidence 9999999999999999999999999999999987666555433333 34444444445555666666666654
Q ss_pred hhhHHHHHHHHHhcC---CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q psy8497 249 YVDEEKKLVQLLSQT---PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325 (2355)
Q Consensus 249 ~lsKkeaLLqLLerl---~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL 325 (2355)
.+...|..+|... ....++||+++...|+.|.-.|+..++.+..+|+.|++.+|..+|.+|+++.++|||||+++
T Consensus 237 --vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVA 314 (442)
T KOG0340|consen 237 --VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVA 314 (442)
T ss_pred --hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechh
Confidence 2333445554433 44689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccc
Q psy8497 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFN 391 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe 391 (2355)
.+|||||.|++||++|.|..|..|++|+||.+|.|+.|.+|.|+...+++.+..+..+.+.++...
T Consensus 315 sRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~ 380 (442)
T KOG0340|consen 315 SRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEY 380 (442)
T ss_pred hcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999888887543
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=400.53 Aligned_cols=355 Identities=27% Similarity=0.474 Sum_probs=314.3
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC---------
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV--------- 88 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~--------- 88 (2355)
..+..|...++.+ |...+...++..|+|+|+.+++.+..+++++++|+||+|||.+|+++++.++.+...
T Consensus 71 ~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~ 150 (482)
T KOG0335|consen 71 PHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGG 150 (482)
T ss_pred CCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCC
Confidence 4455888888888 888899999999999999999999999999999999999999999999999986321
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceE
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRL 164 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdL 164 (2355)
..+.+|||+||++|+.|+++..++|.... .+.++..+|+..... ..+.++|+|+||.+|.+++....+.+..+.+
T Consensus 151 ~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~ 229 (482)
T KOG0335|consen 151 VYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKF 229 (482)
T ss_pred CCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcE
Confidence 24789999999999999999999997666 888999999955443 3445999999999999999999999999999
Q ss_pred EEecccchhcc-cChHHHHHHHHHhCCC----CceEEEEEeccChhHHHHHHHhccC-CeeeccCCCccccccceEEEEe
Q psy8497 165 FIMDEADKLIN-TGFVEDITWIYSQLPP----MKQMLVVSATYSHDNLATLQKYMVD-PLLIRPEDATRPLLGVKQLVAL 238 (2355)
Q Consensus 165 LIVDEAHRLkN-~GF~SrLeeILs~Lpp----nrQILLLSATLS~EILElLkKfLrd-PvIIrVesee~~~seVrQvVvq 238 (2355)
||+|||++|++ .+|...+..|+..+.. ..|.+++|||.+..+...+..++.+ ...+.+.........+.+.+.+
T Consensus 230 ~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~ 309 (482)
T KOG0335|consen 230 LVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILF 309 (482)
T ss_pred EEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeee
Confidence 99999999999 9999999999998754 6799999999999988877777776 5666777777777888888888
Q ss_pred ccCCCCCcchhhhHHHHHHHHHhcCC----C-----CeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHH
Q psy8497 239 IPECKNPSLRYVDEEKKLVQLLSQTP----F-----NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLD 309 (2355)
Q Consensus 239 Vpe~kn~sLt~lsKkeaLLqLLerl~----k-----gRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILE 309 (2355)
+.+. .+...|+++|.... . +++||||.++++++.|+.+|...++.+.-+||..++.+|.++|.
T Consensus 310 V~~~--------~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~ 381 (482)
T KOG0335|consen 310 VNEM--------EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALN 381 (482)
T ss_pred ecch--------hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHH
Confidence 8766 46677777776443 2 28999999999999999999999999999999999999999999
Q ss_pred HHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 310 SFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 310 rFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
.|+.|.+.|||||+++++|||+|.|++||+||+|.....|++||||+||.|..|.++.|+...+....+.+.+
T Consensus 382 ~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~ 454 (482)
T KOG0335|consen 382 DFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVE 454 (482)
T ss_pred HhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998666666555543
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=408.85 Aligned_cols=340 Identities=17% Similarity=0.247 Sum_probs=262.8
Q ss_pred CcccCCcHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 23 ENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 23 SFEeLlLkpLLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.|.......|.+.|...||..|+++|.++++.+++|+|+|+++|||+|||++|+++++..+.. ....++|||+||++|
T Consensus 16 ~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~--~~~~~aL~l~PtraL 93 (742)
T TIGR03817 16 PWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD--DPRATALYLAPTKAL 93 (742)
T ss_pred CCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh--CCCcEEEEEcChHHH
Confidence 444444455999999999999999999999999999999999999999999999999999875 346789999999999
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhh----cccCcCceEEEecccchhcc
Q psy8497 103 AVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLK----YLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 103 AqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr----~LdLSkIdLLIVDEAHRLkN 175 (2355)
+.|+.+.++++. ..++++..+.|+..... ....++|||+||++|...+... ...+..+++|||||+|.+..
T Consensus 94 a~q~~~~l~~l~--~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT--LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc--cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999986 33788999999876432 2334899999999986432210 11267889999999999865
Q ss_pred cChHHHHHHHHH-------hCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCC----
Q psy8497 176 TGFVEDITWIYS-------QLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKN---- 244 (2355)
Q Consensus 176 ~GF~SrLeeILs-------~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn---- 244 (2355)
.|...+..++. .++..+|+|++|||++... +.+..++..+..+. ..... ......+..+.+....
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i-~~~~~-~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAV-TEDGS-PRGARTVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEE-CCCCC-CcCceEEEEecCCccccccc
Confidence 35555444443 3456789999999998764 45556666564432 22111 1122223322222100
Q ss_pred -----CcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--------CCccEEeeCCCCHHHHHHHHHHH
Q psy8497 245 -----PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA--------NFGAEYLSGAQDQKARLASLDSF 311 (2355)
Q Consensus 245 -----~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--------GIKVarLHGgMSqEERqeILErF 311 (2355)
...........|..++.. ..++||||++++.++.|+.+|... +.++..+||++.+++|..+++.|
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 001112333445555543 369999999999999999998764 56788999999999999999999
Q ss_pred hCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 312 RSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
++|++++||||+++++|||+|.+++||+++.|.+...|+||+|||||.|+.+.+++++..+
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999888643
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=403.21 Aligned_cols=360 Identities=39% Similarity=0.605 Sum_probs=333.8
Q ss_pred cccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCe
Q psy8497 14 VLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQ 92 (2355)
Q Consensus 14 ~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggR 92 (2355)
.|........|+++.+-. ++-+|...+|..|+++|..|||.++.+.++||++..|+|||++|.++++..|. ......+
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~-~~~~~~q 95 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD-SRSSHIQ 95 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC-cccCcce
Confidence 455567788999998887 99999999999999999999999999999999999999999999999988776 3455678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecc
Q psy8497 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDE 169 (2355)
Q Consensus 93 VLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDE 169 (2355)
++||+||++|+.|+.+.+.+++..+.++++.+++|+..... .+..++|+|+||++|..+...+.++...++++|+||
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDE 175 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEecc
Confidence 99999999999999999999999888999999999986553 344589999999999999999999999999999999
Q ss_pred cchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcch
Q psy8497 170 ADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR 248 (2355)
Q Consensus 170 AHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt 248 (2355)
|+.|.+ ..|...+..|+..||...|++.+|||.+.++...+.++|.+|.+++..........++|++..++...+....
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsvee 255 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEE 255 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHH
Confidence 999998 5589999999999999999999999999999999999999999999999999999999999988888766666
Q ss_pred hhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccc
Q psy8497 249 YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARG 328 (2355)
Q Consensus 249 ~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEG 328 (2355)
...++..|..++...+..++||||.....|+-++++|...|+.+.+|.|.|.+.+|..+++.++.-.++|||+|+..++|
T Consensus 256 mrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRG 335 (980)
T KOG4284|consen 256 MRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARG 335 (980)
T ss_pred HHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhcc
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 329 IDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 329 LDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
||-+.|++||++|.|.+...|++|||||||+|..|..|.|+.....
T Consensus 336 IDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 336 IDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred CCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999866543
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=395.06 Aligned_cols=359 Identities=25% Similarity=0.414 Sum_probs=296.1
Q ss_pred cccCcccCCcHH-HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc-----CCCCCe
Q psy8497 20 VLFENDVLIEKP-IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL-----PVQQPQ 92 (2355)
Q Consensus 20 kV~SFEeLlLkp-LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek-----r~qggR 92 (2355)
....|.++++.+ +.+-|+. ++|..|+.+|.++||.|+++++++|.++||+|||++|++|++..|+.. +..+..
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 346789999999 8888877 799999999999999999999999999999999999999999999853 345788
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHh-hcccCcCceEEEe
Q psy8497 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIM 167 (2355)
Q Consensus 93 VLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdr-r~LdLSkIdLLIV 167 (2355)
+||||||++|+.|+++.+.++...+--|-..++.|+...... ...++|||+||++|++.+.. ..+.+..+.|||+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 999999999999999999999876644555677787654432 33499999999999998876 5667888999999
Q ss_pred cccchhcccChHHHHHHHHHhCC-------------CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccc------
Q psy8497 168 DEADKLINTGFVEDITWIYSQLP-------------PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRP------ 228 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~Lp-------------pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~------ 228 (2355)
||+++|++.+|...+..|++.+. ...|.+++|||+...+..+...-|.+|+.|..+.....
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 99999999999999999988762 23578999999998888888888899988873321111
Q ss_pred -------------------cccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc-
Q psy8497 229 -------------------LLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA- 288 (2355)
Q Consensus 229 -------------------~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr- 288 (2355)
+..+.+.+..+|.. +..+.....|.+........++|||+.+..+++--++.|...
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK----LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK----LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCc----hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 11222333333322 233344455566666666679999999999998877776541
Q ss_pred ---------------------CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHh
Q psy8497 289 ---------------------NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAA 347 (2355)
Q Consensus 289 ---------------------GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPq 347 (2355)
+.++.+|||+|.+++|..+++.|....-.||+||+++++|||||.|++||.||+|+++.
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 36789999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 348 TYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 348 SYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+|++|+||++|+|.+|..++|..+.+.+++..+..
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 99999999999999999999999999887666644
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=382.31 Aligned_cols=347 Identities=25% Similarity=0.380 Sum_probs=298.5
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc-----CCCCCeEEE
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL-----PVQQPQTII 95 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek-----r~qggRVLI 95 (2355)
.+|+++.+.+ |++++..+||..|+-+|..+||.+++|++++..|.||+|||.+|++|+++.|... ...+..++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 7999999999 9999999999999999999999999999999999999999999999999988752 234678999
Q ss_pred EcccHHHHHHHHHHHHHHhcccC-CcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhhc-ccCcCceEEEecc
Q psy8497 96 LAPTREIAVQITDVVRSVGAHVK-NLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLKY-LNMDSVRLFIMDE 169 (2355)
Q Consensus 96 LVPTRALAqQ~anwLREFgk~AP-gLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr~-LdLSkIdLLIVDE 169 (2355)
||||++|++|++..+.++...++ .++++-+..+.... .....++|||+||..|+.++..+. ..+..+.+|||||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999876654 45554444333222 334559999999999999998877 5678899999999
Q ss_pred cchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccc-cccceEEEEeccCCCCCcch
Q psy8497 170 ADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRP-LLGVKQLVALIPECKNPSLR 248 (2355)
Q Consensus 170 AHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~-~seVrQvVvqVpe~kn~sLt 248 (2355)
|+.|+..||...+..+...+|+..|.++||||+..++..+-..++.+|+++.......+ ...+.|+.+.+.+.
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~------ 252 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE------ 252 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccc------
Confidence 99999999999999999999999999999999999998888899999999888766544 35566777766643
Q ss_pred hhhHHHHHHHHHhc-CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc---
Q psy8497 249 YVDEEKKLVQLLSQ-TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL--- 324 (2355)
Q Consensus 249 ~lsKkeaLLqLLer-l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA--- 324 (2355)
++...++.++.- .-.+++|||++++.++..|.-+|..-|++.++|.|.|+...|.-+|+.|+.|-+++||||+.
T Consensus 253 --DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 253 --DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSAD 330 (569)
T ss_pred --hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccc
Confidence 122222222211 12369999999999999999999999999999999999999999999999999999999981
Q ss_pred --------------------------------cccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 325 --------------------------------AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 325 --------------------------------LGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
..+|||+..|.+||+||+|.++..||+|+||++|.+.+|.++.|+.+.
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch
Confidence 468999999999999999999999999999999999999999999987
Q ss_pred CHHH
Q psy8497 373 SLVK 376 (2355)
Q Consensus 373 DVEe 376 (2355)
+..-
T Consensus 411 e~~g 414 (569)
T KOG0346|consen 411 EEFG 414 (569)
T ss_pred HHhh
Confidence 7763
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=387.46 Aligned_cols=320 Identities=18% Similarity=0.281 Sum_probs=249.2
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+||..|+|+|.++++.+++++++|+++|||+|||++|+++++.. .+.+|||+|+++|+.|+...+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-------~~~~lVi~P~~~L~~dq~~~l~~~---- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-------DGITLVISPLISLMEDQVLQLKAS---- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-------CCcEEEEecHHHHHHHHHHHHHHc----
Confidence 489999999999999999999999999999999999999998732 467999999999999998888765
Q ss_pred CCcEEEEEECCcccc--------CCCCCCcEEEECHHHHHHHH-Hhhcc-cCcCceEEEecccchhcccC--hHHHHH--
Q psy8497 118 KNLHVDYFIGGTQVE--------RPKRPVQIVVGSPGRIKQMI-KLKYL-NMDSVRLFIMDEADKLINTG--FVEDIT-- 183 (2355)
Q Consensus 118 PgLrVVvytGGkq~r--------kqirq~DILVTTPErLLDLL-drr~L-dLSkIdLLIVDEAHRLkN~G--F~SrLe-- 183 (2355)
++.+..+.++.... .....++||++||+.+.... ....+ ....+.+|||||||++.+++ |...+.
T Consensus 75 -gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 75 -GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 45666666665432 11234789999999875322 11222 46788999999999999876 333333
Q ss_pred -HHHHhCCCCceEEEEEeccChhHHHHHHHhc--cCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHH
Q psy8497 184 -WIYSQLPPMKQMLVVSATYSHDNLATLQKYM--VDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL 260 (2355)
Q Consensus 184 -eILs~LppnrQILLLSATLS~EILElLkKfL--rdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLL 260 (2355)
.+...+ +..++++||||++......+...+ ..+.++..... ...+...+ ..... .....++.++
T Consensus 154 ~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~---r~nl~~~v--~~~~~-------~~~~~l~~~l 220 (470)
T TIGR00614 154 GSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD---RPNLYYEV--RRKTP-------KILEDLLRFI 220 (470)
T ss_pred HHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---CCCcEEEE--EeCCc-------cHHHHHHHHH
Confidence 333444 578899999999988776665544 23433322211 11111111 11110 1233455555
Q ss_pred h-cCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE
Q psy8497 261 S-QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN 339 (2355)
Q Consensus 261 e-rl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII 339 (2355)
. .....++||||++++.++.++..|...|+.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 221 ~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~ 300 (470)
T TIGR00614 221 RKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH 300 (470)
T ss_pred HHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE
Confidence 4 334457799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 340 LEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 340 yDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+++|.++..|+|++|||||.|.++.+++|+...+...+..++.
T Consensus 301 ~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 301 YSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred eCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999999999999999888877777654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=389.41 Aligned_cols=348 Identities=30% Similarity=0.488 Sum_probs=309.4
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh-------cCCC
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-------LPVQ 89 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e-------kr~q 89 (2355)
+-++.+|.++.++. |++.|++.|+..|+|+|.++||.++.|++.|-.+-||+|||++|+++++....+ ....
T Consensus 166 pPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E 245 (610)
T KOG0341|consen 166 PPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE 245 (610)
T ss_pred CCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC
Confidence 45688899988766 999999999999999999999999999999999999999999999998765443 2456
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcc-----cCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcccCc
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAH-----VKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYLNMD 160 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~-----APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~LdLS 160 (2355)
++.-|||||+++|+.|+.+.+..+... .|.++..+..|+.....+. ..++|+|+||.+|.+++..+.+.+.
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd 325 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLD 325 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHH
Confidence 788999999999999999999987643 4678888999998766543 4489999999999999999999999
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEecc
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIP 240 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVp 240 (2355)
-+.+|.+|||++|++.+|...+..|+.+++...|.|++|||++..+..+....|..|+.+.+.........+.|.+.++.
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVk 405 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVK 405 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888777666666554443
Q ss_pred CCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEE
Q psy8497 241 ECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320 (2355)
Q Consensus 241 e~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLV 320 (2355)
.. .+...|++.|.... .+||||+..+..++.+.+||.-.|+.++.|||+-.+++|..+++.|+.|+-+|||
T Consensus 406 qE--------aKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLV 476 (610)
T KOG0341|consen 406 QE--------AKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLV 476 (610)
T ss_pred hh--------hhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEE
Confidence 32 23445666665543 4899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 321 STSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
+|+++..|||+|++.+||+||+|-...+|++||||+||.|+.|.+-.|+.....
T Consensus 477 ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 999999999999999999999999999999999999999999999999976543
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=375.30 Aligned_cols=375 Identities=33% Similarity=0.510 Sum_probs=325.8
Q ss_pred hhhhhhccccccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHH
Q psy8497 5 IQKCARTKDVLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALN 81 (2355)
Q Consensus 5 Iesr~rTk~~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILe 81 (2355)
|++.++--+-.+.+=++.+|+++.++| |+++|+.++|..|+.+|..+||.|+.. +++|.++..|+|||.+|++.+|.
T Consensus 73 ~~~~vk~~dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLs 152 (477)
T KOG0332|consen 73 IESNVKLADPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLS 152 (477)
T ss_pred hhhceeecCCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHH
Confidence 333333333445556789999999999 999999999999999999999999975 78999999999999999999998
Q ss_pred HHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc-CCCCCCcEEEECHHHHHHHHHh-hcccC
Q psy8497 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKL-KYLNM 159 (2355)
Q Consensus 82 rL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r-kqirq~DILVTTPErLLDLLdr-r~LdL 159 (2355)
++. .....+++|.|+|+++||.|+-+.+.+++.+. .+.+.+.+-+.... -..-..+|+|+||..+.+++.. ..+.+
T Consensus 153 rvd-~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~ 230 (477)
T KOG0332|consen 153 RVD-PDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDL 230 (477)
T ss_pred hcC-ccccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhCh
Confidence 765 34456788999999999999999999999988 88887777666332 2222378999999999998877 77888
Q ss_pred cCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEe
Q psy8497 160 DSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL 238 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvq 238 (2355)
..+.++|+|||+.+++ .+|...-..|...+|+..|+|++|||....+..+..+.+.++-.+.+..+......+.+++..
T Consensus 231 ~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~ 310 (477)
T KOG0332|consen 231 EKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVL 310 (477)
T ss_pred hhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheee
Confidence 9999999999998886 458888888999999999999999999999999999999999999899899999999999999
Q ss_pred ccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccE
Q psy8497 239 IPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRI 318 (2355)
Q Consensus 239 Vpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdV 318 (2355)
+... ..+...|.+++.....++.||||.+++.+..|+..|...|+.+..+||.|...+|..++++|+.|..+|
T Consensus 311 C~~~-------~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kV 383 (477)
T KOG0332|consen 311 CACR-------DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKV 383 (477)
T ss_pred ccch-------hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceE
Confidence 8766 245577777777777789999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCCccEEEEecCCC------CHhHHHHHhhccCCCCCccEEEEEEccc-CHHHHHHHHHhhcccc
Q psy8497 319 LVTTDLAARGIDAANVDLVINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVSAE-SLVKFHSLMGEINLDH 388 (2355)
Q Consensus 319 LVSTSALGEGLDLPaVDTVIIyDSP~------SPqSYIQRIGRAGRiGQkGkVIVLVSsd-DVEeIEsLrReLKLKL 388 (2355)
||+|++.++|||++.|++||+||+|. .++.|++||||+||.|+.|.+|.++... ...++..+...+....
T Consensus 384 LitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i 460 (477)
T KOG0332|consen 384 LITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKI 460 (477)
T ss_pred EEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcc
Confidence 99999999999999999999999996 7899999999999999999999998654 4555667666554443
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=376.17 Aligned_cols=357 Identities=27% Similarity=0.493 Sum_probs=306.1
Q ss_pred CcccccCcccCCcH-H-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh-----cCCC
Q psy8497 17 NIDVLFENDVLIEK-P-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-----LPVQ 89 (2355)
Q Consensus 17 siDkV~SFEeLlLk-p-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e-----kr~q 89 (2355)
-+.++.+|++..-+ + ++..+.+.||.+|+|+|.+++|.+++|.++|.++.||+|||++++++.+..+.. ....
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 45789999986644 3 999999999999999999999999999999999999999999999988765542 2245
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEE
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLF 165 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLL 165 (2355)
++.+|++.|+++|+.|+.-.+.++. +.++..++++|+..... ..+.+.|+|+||.+|.++.....+.+..+.+|
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 6789999999999999998888773 33778888888765443 33458999999999999999999999999999
Q ss_pred EecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccc-cccceEEEEeccCCCC
Q psy8497 166 IMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRP-LLGVKQLVALIPECKN 244 (2355)
Q Consensus 166 IVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~-~seVrQvVvqVpe~kn 244 (2355)
|+|||++|++++|...+.+|+-.+.+..|++++|||++..+..+...|+..|.++.+...... ...+.|.+ .++..
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d-- 448 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTD-- 448 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-Eeccc--
Confidence 999999999999999999999999999999999999999999999999999998887765443 33455555 33333
Q ss_pred CcchhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec
Q psy8497 245 PSLRYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323 (2355)
Q Consensus 245 ~sLt~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS 323 (2355)
..+...+..++... ...++||||..+.+++.|..-|.-.|+....|||+-.+.+|+.+++.|++|.++|||+|+
T Consensus 449 -----~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTD 523 (629)
T KOG0336|consen 449 -----SEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATD 523 (629)
T ss_pred -----HHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEec
Confidence 12222222222222 346999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh
Q psy8497 324 LAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 324 ALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
++.+|||+|++++|++||.|.+.+.|++|+||+||.|+.|..|.|+...+-.+...+++.
T Consensus 524 laSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 524 LASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred hhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888777766553
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=396.94 Aligned_cols=336 Identities=18% Similarity=0.271 Sum_probs=256.2
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPY-VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~-LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
+.|+++.+++ +++.+...||.+|+|+|.++++. +..++|+|+++|||+|||++|.++++..+. .++++|||+|+
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~----~~~kal~i~P~ 76 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA----RGGKALYIVPL 76 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh----cCCcEEEEeCh
Confidence 3678888777 99999999999999999999998 678999999999999999999999998876 36789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
++|+.|+.+.++++.. . ++++..++|+..... .....+|+|+||+++..++......+..+++|||||+|.+.+..+
T Consensus 77 raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 77 RALASEKFEEFERFEE-L-GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 9999999999998753 3 789999999865443 234589999999999888876544567899999999999988777
Q ss_pred HHHHHHHHHhC---CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEe-----ccCCCCCcch--
Q psy8497 179 VEDITWIYSQL---PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL-----IPECKNPSLR-- 248 (2355)
Q Consensus 179 ~SrLeeILs~L---ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvq-----Vpe~kn~sLt-- 248 (2355)
...+..++..+ .+..|+|+||||+++. ..+..|+..... .... .+ ..+...+.. +... ...+.
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~-~~~~--rp-v~l~~~v~~~~~~~~~~~-~~~~~~~ 227 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELV-DSEW--RP-IDLREGVFYGGAIHFDDS-QREVEVP 227 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcc-cCCC--CC-CCCeeeEecCCeeccccc-cccCCCc
Confidence 77777666554 5678999999999742 334444432211 1000 00 111111100 0000 00000
Q ss_pred -hhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc------------------------------------CCc
Q psy8497 249 -YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA------------------------------------NFG 291 (2355)
Q Consensus 249 -~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr------------------------------------GIK 291 (2355)
.......+...+. ..+++||||++++.++.++..|... ..+
T Consensus 228 ~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 228 SKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred cchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 0112233333333 3469999999999999888887643 136
Q ss_pred cEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ec-----CCCCHhHHHHHhhccCCCCCc
Q psy8497 292 AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LE-----IPHDAATYLHRMGRAGRYGTR 362 (2355)
Q Consensus 292 VarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yD-----SP~SPqSYIQRIGRAGRiGQk 362 (2355)
++++|++|+..+|..+++.|++|.++|||||+++++|||+|++++||. || .|.+..+|+||+|||||.|.+
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 899999999999999999999999999999999999999999998885 66 578999999999999999865
Q ss_pred --cEEEEEEccc
Q psy8497 363 --GLVITIVSAE 372 (2355)
Q Consensus 363 --GkVIVLVSsd 372 (2355)
|.+|+++...
T Consensus 386 ~~G~~ii~~~~~ 397 (737)
T PRK02362 386 PYGEAVLLAKSY 397 (737)
T ss_pred CCceEEEEecCc
Confidence 8888888653
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=413.17 Aligned_cols=344 Identities=17% Similarity=0.247 Sum_probs=248.9
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|+.||.++++||+ .+.+|||+++||+|||+ +.+++|.+|.....-.+++|||||++++ ..|.++|..|+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktv-qti~fl~~l~~~~~~~gpflvvvplst~----~~W~~ef~~w~ 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTV-QTITFLSYLFHSLQIHGPFLVVVPLSTI----TAWEREFETWT 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcch-HHHHHHHHHHHhhhccCCeEEEeehhhh----HHHHHHHHHHh
Confidence 589999999999987 57899999999999995 4568888887666567889999999999 88999999999
Q ss_pred CCcEEEEEECCccccCCCC-------------CCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHH
Q psy8497 118 KNLHVDYFIGGTQVERPKR-------------PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqir-------------q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLee 184 (2355)
.+++++|.|+...+..++ .+++|||||+++ +.+..+|.-..|.+++|||||+|+|.. ..+..
T Consensus 444 -~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~--LkDk~~L~~i~w~~~~vDeahrLkN~~--~~l~~ 518 (1373)
T KOG0384|consen 444 -DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIV--LKDKAELSKIPWRYLLVDEAHRLKNDE--SKLYE 518 (1373)
T ss_pred -hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHH--hccHhhhccCCcceeeecHHhhcCchH--HHHHH
Confidence 999999999976553221 389999999998 444456777889999999999999875 66666
Q ss_pred HHHhCCCCceEEEEEeccChhHHHHHHHhc--cCCeeeccC------------------------------C---Ccccc
Q psy8497 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYM--VDPLLIRPE------------------------------D---ATRPL 229 (2355)
Q Consensus 185 ILs~LppnrQILLLSATLS~EILElLkKfL--rdPvIIrVe------------------------------s---ee~~~ 229 (2355)
.+..+.. ...|++|+||.++.+..+..++ ..|..+... . +....
T Consensus 519 ~l~~f~~-~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp 597 (1373)
T KOG0384|consen 519 SLNQFKM-NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLP 597 (1373)
T ss_pred HHHHhcc-cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCC
Confidence 6766653 4457789998887666665443 111111000 0 00000
Q ss_pred ccceEEEE--------------------------------------eccCCC-CCcchh------h--------------
Q psy8497 230 LGVKQLVA--------------------------------------LIPECK-NPSLRY------V-------------- 250 (2355)
Q Consensus 230 seVrQvVv--------------------------------------qVpe~k-n~sLt~------l-------------- 250 (2355)
....+++. .+..+. .+++.. +
T Consensus 598 ~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~ 677 (1373)
T KOG0384|consen 598 PKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQA 677 (1373)
T ss_pred CCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHH
Confidence 00111100 011111 111110 0
Q ss_pred -----hHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC---CCccEEE
Q psy8497 251 -----DEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR---GKVRILV 320 (2355)
Q Consensus 251 -----sKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS---GEIdVLV 320 (2355)
.++..|..+|.+ ..++|||||+||++|+++|++||..+++.+.+|+|.+..+-|+++|+.|+. ..|+||+
T Consensus 678 lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLL 757 (1373)
T KOG0384|consen 678 LIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLL 757 (1373)
T ss_pred HHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEE
Confidence 000111122222 134799999999999999999999999999999999999999999999995 5788999
Q ss_pred EecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE--EEEEEcccCHHHHHHHHHhhccccccccCCCccc
Q psy8497 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL--VITIVSAESLVKFHSLMGEINLDHAFNVGLVPDN 398 (2355)
Q Consensus 321 STSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk--VIVLVSsdDVEeIEsLrReLKLKLaLe~eIVPkg 398 (2355)
||+|||.||||.+||+|||||++|||++++|+++||||+||+.. |+.|++..+++. .+......++.+...++..+
T Consensus 758 STRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEe--EilERAk~KmvLD~aVIQ~m 835 (1373)
T KOG0384|consen 758 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEE--EILERAKLKMVLDHAVIQRM 835 (1373)
T ss_pred ecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHH--HHHHHHHHHhhhHHHHHHhh
Confidence 99999999999999999999999999999999999999998765 555555555443 34444444444444444443
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=391.50 Aligned_cols=346 Identities=16% Similarity=0.230 Sum_probs=257.3
Q ss_pred CCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
.|++||.++++||.+ +-++|++++||+||| ++.|++|.+|.......+++|||||.++| .+|+.+|..|+|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKT-lQtIs~l~yl~~~~~~~GPfLVi~P~StL----~NW~~Ef~rf~P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKT-LQTISLLGYLKGRKGIPGPFLVIAPKSTL----DNWMNEFKRFTP 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchH-HHHHHHHHHHHHhcCCCCCeEEEeeHhhH----HHHHHHHHHhCC
Confidence 899999999999975 668999999999999 55668888888767778899999999999 999999999999
Q ss_pred CcEEEEEECCccccCC-------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 119 NLHVDYFIGGTQVERP-------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 119 gLrVVvytGGkq~rkq-------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
++++++|+|+...+.. ...++|+|||||+++. ....+....|.+|||||||||++.. +.+..++..+..
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~--dk~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~ 317 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIK--DKSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKT 317 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHh--hHHHHhcCCceEEEechhhhhcchh--hHHHHHHHHhcc
Confidence 9999999999865532 2249999999999743 3456667789999999999999987 888888888864
Q ss_pred CceEEEEEeccChhHHHHHHHhcc--CCeeecc----------------------------------C-----CCcccc-
Q psy8497 192 MKQMLVVSATYSHDNLATLQKYMV--DPLLIRP----------------------------------E-----DATRPL- 229 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKfLr--dPvIIrV----------------------------------e-----see~~~- 229 (2355)
. ..|++|+||.++.+..++.+|. -|.++.. . ....+.
T Consensus 318 ~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKk 396 (971)
T KOG0385|consen 318 D-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKK 396 (971)
T ss_pred c-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcc
Confidence 4 4577899988776655544331 0111000 0 000000
Q ss_pred -----------------------------------ccceEEEEeccCCCCCcch------------------hhhHHHHH
Q psy8497 230 -----------------------------------LGVKQLVALIPECKNPSLR------------------YVDEEKKL 256 (2355)
Q Consensus 230 -----------------------------------seVrQvVvqVpe~kn~sLt------------------~lsKkeaL 256 (2355)
..+..++.++..+.+..+. ...++..|
T Consensus 397 E~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 397 ELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred eeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehH
Confidence 0000011111111111110 11222333
Q ss_pred HHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC---CccEEEEecccccccCC
Q psy8497 257 VQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG---KVRILVTTDLAARGIDA 331 (2355)
Q Consensus 257 LqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG---EIdVLVSTSALGEGLDL 331 (2355)
..+|... .++|||||+|+..++++|.+|+..+++.+.+|+|.++.++|...|+.|+.. .+-|||+|+|+|.||||
T Consensus 477 DkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL 556 (971)
T KOG0385|consen 477 DKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINL 556 (971)
T ss_pred HHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccc
Confidence 3333322 357999999999999999999999999999999999999999999999964 45579999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccCCCccc
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDN 398 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~eIVPkg 398 (2355)
.++|+||+||++|||+.++|++.||||+||...|++|....+....+.+......++.+...++..+
T Consensus 557 ~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 557 TAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred ccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 9999999999999999999999999999987766666655555555555555555555555566555
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=399.51 Aligned_cols=327 Identities=18% Similarity=0.267 Sum_probs=249.1
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+...+.. +|+..|+|+|.++|+.++.++++|+.+|||+|||++|+++++.. .+.+|||+|+++|+.++...+
T Consensus 448 L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSLmqDQV~~L 520 (1195)
T PLN03137 448 LEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSLIQDQIMNL 520 (1195)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHHHHHHHHHH
Confidence 4444444 79999999999999999999999999999999999999999742 467999999999998666666
Q ss_pred HHHhcccCCcEEEEEECCccccCC----------CCCCcEEEECHHHHHH--HHHh--hcc-cCcCceEEEecccchhcc
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVERP----------KRPVQIVVGSPGRIKQ--MIKL--KYL-NMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rkq----------irq~DILVTTPErLLD--LLdr--r~L-dLSkIdLLIVDEAHRLkN 175 (2355)
... ++.+..+.++...... ...++|||+|||+|.. .+.. ..+ ....+.+|||||||++..
T Consensus 521 ~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSq 595 (1195)
T PLN03137 521 LQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ 595 (1195)
T ss_pred HhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhh
Confidence 553 5777888877543211 1347999999999852 1211 111 124478999999999999
Q ss_pred cC--hHHHHHH--HHHhCCCCceEEEEEeccChhHHHHHHHhcc--CCeeeccCCCccccccceEEEEeccCCCCCcchh
Q psy8497 176 TG--FVEDITW--IYSQLPPMKQMLVVSATYSHDNLATLQKYMV--DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY 249 (2355)
Q Consensus 176 ~G--F~SrLee--ILs~LppnrQILLLSATLS~EILElLkKfLr--dPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ 249 (2355)
|+ |...+.. ++....+..++++||||++..+...+...+. .+.++.... ....+ .+..++..
T Consensus 596 WGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf---~RpNL--~y~Vv~k~------- 663 (1195)
T PLN03137 596 WGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF---NRPNL--WYSVVPKT------- 663 (1195)
T ss_pred cccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc---Cccce--EEEEeccc-------
Confidence 87 5444433 2333345788999999999888776665543 222222111 11112 12222211
Q ss_pred hhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccc
Q psy8497 250 VDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARG 328 (2355)
Q Consensus 250 lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEG 328 (2355)
......|..++... .....||||.+++.++.|+..|...|+.+..+||+|+..+|..+++.|..|+++|||||.++++|
T Consensus 664 kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMG 743 (1195)
T PLN03137 664 KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743 (1195)
T ss_pred hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcC
Confidence 01123445555432 24578999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 329 IDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 329 LDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
||+|+|++||+|++|.++..|+|++|||||.|.++.+|+|+...+...+..++.
T Consensus 744 IDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998777766666654
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=371.12 Aligned_cols=357 Identities=29% Similarity=0.448 Sum_probs=319.0
Q ss_pred cCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh----cCCCC
Q psy8497 16 SNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK----LPVQQ 90 (2355)
Q Consensus 16 SsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e----kr~qg 90 (2355)
+..+++..|+.+.+.. |...+....|.+++|+|-++|+..+.++++|-.|-||+|||-+|+.+++..++. .+..+
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~g 296 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEG 296 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCC
Confidence 4568899999999888 999999999999999999999999999999999999999999999999988874 23567
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEE
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFI 166 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLI 166 (2355)
+-.||||||++|+.|++..+++|++.+ +|++++++|+.....+ ...+.|||+||++|++++..+..++..+.+||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 888999999999999999999998887 9999999998765433 23489999999999999999999999999999
Q ss_pred ecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCc
Q psy8497 167 MDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPS 246 (2355)
Q Consensus 167 VDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~s 246 (2355)
|||+++|.+.+|...+..|..++.+..|.|++|||+...+..+...+|.+|+.+........-..+.|.+..++..
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~---- 451 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE---- 451 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc----
Confidence 9999999999999999999999999999999999999999999999999999887777767777788888777765
Q ss_pred chhhhHHHHHHHHHh-cCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q psy8497 247 LRYVDEEKKLVQLLS-QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325 (2355)
Q Consensus 247 Lt~lsKkeaLLqLLe-rl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL 325 (2355)
..++..|+.-|. ....++||||+.-...++.|+..|...++.+..+||+|.+.+|.++|..|+.+...|||+|++.
T Consensus 452 ---~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDva 528 (731)
T KOG0339|consen 452 ---EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVA 528 (731)
T ss_pred ---HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHh
Confidence 123333333332 2234699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
.+|+|||.+.+||+||.-.+...+.|||||.||.|.+|..+.|++..+....-.|
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHH
Confidence 9999999999999999999999999999999999999999999988776644333
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=382.15 Aligned_cols=318 Identities=21% Similarity=0.323 Sum_probs=252.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+||..|+|+|.++++.++.++++|+++|||+|||++|+++++.. .+.+|||+|+++|+.|+.+.++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-------~g~~lVisPl~sL~~dq~~~l~~~----- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-------KGLTVVISPLISLMKDQVDQLRAA----- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-------CCcEEEEcCCHHHHHHHHHHHHHc-----
Confidence 89999999999999999999999999999999999999988732 457899999999999999988876
Q ss_pred CcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC--hHH---HHHHH
Q psy8497 119 NLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG--FVE---DITWI 185 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G--F~S---rLeeI 185 (2355)
++.+..+.++..... .....+|+++||++|........+....+++|||||||++..++ |.. .+..+
T Consensus 77 gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l 156 (591)
T TIGR01389 77 GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSL 156 (591)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHH
Confidence 456777777643321 12347899999999875554555667789999999999998876 433 34444
Q ss_pred HHhCCCCceEEEEEeccChhHHHHHHHhcc--CCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcC
Q psy8497 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMV--DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT 263 (2355)
Q Consensus 186 Ls~LppnrQILLLSATLS~EILElLkKfLr--dPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl 263 (2355)
...++ ..++|++|||++......+..++. .+..+... . ....+. +..... ......+..++...
T Consensus 157 ~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~--~r~nl~--~~v~~~--------~~~~~~l~~~l~~~ 222 (591)
T TIGR01389 157 AERFP-QVPRIALTATADAETRQDIRELLRLADANEFITS-F--DRPNLR--FSVVKK--------NNKQKFLLDYLKKH 222 (591)
T ss_pred HHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-C--CCCCcE--EEEEeC--------CCHHHHHHHHHHhc
Confidence 45554 445999999999888777766553 22222111 1 011111 111111 12334566666665
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP 343 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP 343 (2355)
...++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|..|.++|||||+++++|||+|++++||++++|
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 344 HDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 344 ~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
.+...|+|++|||||.|.++.+++|+...+...+..++.
T Consensus 303 ~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 303 GNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHh
Confidence 999999999999999999999999988877766666543
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=385.13 Aligned_cols=317 Identities=20% Similarity=0.313 Sum_probs=247.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+||..|+|+|.++++.++.++++|+++|||+|||++|+++++.. .+.+|||+|+++|+.|+.+.++.+
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL~~dqv~~l~~~----- 88 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISLMKDQVDQLLAN----- 88 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHHHHHHHHHHHHc-----
Confidence 79999999999999999999999999999999999999998732 457999999999999999988876
Q ss_pred CcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC--hHH---HHHHH
Q psy8497 119 NLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG--FVE---DITWI 185 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G--F~S---rLeeI 185 (2355)
++.+..+.+...... .....+|+++||++|........+....+++|||||||++..++ |.. .+..+
T Consensus 89 gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l 168 (607)
T PRK11057 89 GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQL 168 (607)
T ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHH
Confidence 455666655543221 12237899999999864333333445678899999999999876 333 33344
Q ss_pred HHhCCCCceEEEEEeccChhHHHHHHHhc--cCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcC
Q psy8497 186 YSQLPPMKQMLVVSATYSHDNLATLQKYM--VDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT 263 (2355)
Q Consensus 186 Ls~LppnrQILLLSATLS~EILElLkKfL--rdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl 263 (2355)
...+ +..+++++|||++......+...+ ..+.++..... . ..+. +..+... .....|+.++...
T Consensus 169 ~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~-r--~nl~--~~v~~~~--------~~~~~l~~~l~~~ 234 (607)
T PRK11057 169 RQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD-R--PNIR--YTLVEKF--------KPLDQLMRYVQEQ 234 (607)
T ss_pred HHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCC-C--Ccce--eeeeecc--------chHHHHHHHHHhc
Confidence 4444 478899999999987765554433 33333221111 1 1111 1111111 1234556666666
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP 343 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP 343 (2355)
...++||||++++.++.++..|...++.+..+||+|+..+|..+++.|+.|.++|||||+++++|||+|+|++||+|+.|
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P 314 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIP 314 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCC
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHH
Q psy8497 344 HDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 344 ~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLr 381 (2355)
.+...|+|++|||||.|.++.+++|+...+...+..++
T Consensus 315 ~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 315 RNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999887776666554
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=368.14 Aligned_cols=363 Identities=34% Similarity=0.571 Sum_probs=327.9
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+.+.+|+.+.+++ |++++++.||.+|+.+|+.||..+..|.++++.+.+|+|||.++.++++..+. ......++|+++
T Consensus 23 evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD-~~~ke~qalila 101 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID-MSVKETQALILA 101 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC-cchHHHHHHHhc
Confidence 4477999999999 99999999999999999999999999999999999999999999999887653 344566799999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC-----CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK-----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi-----rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
|+++|++|.....+.++... +.++....|+....... ..++|+|+||.++.+++....+....+.++|+||++.
T Consensus 102 PtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 99999999998888887666 78888888877655221 2279999999999999998888888899999999999
Q ss_pred hcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 173 LINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
++..+|...+..++..+++..|++++|||++.+++.....++..|..+.+.........+++++..+.... +
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~--------k 252 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE--------K 252 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc--------c
Confidence 99999999999999999999999999999999999999999999999999988888888888887776653 5
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...|..+.. ...+.+|||++++.+..|.+.|...++.+..+||.|.+.+|..++..|+.|..+|||.|..+++|||+.
T Consensus 253 ~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 253 LDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred ccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchh
Confidence 566666666 446899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccC
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVG 393 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~e 393 (2355)
.+.+||+|+.|.+...|++|+||+||.|.+|.++.++...+...+..+.+.+...+...+.
T Consensus 331 ~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 331 QVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred hcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 9999999999999999999999999999999999999999999999998887776655443
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=383.41 Aligned_cols=337 Identities=18% Similarity=0.258 Sum_probs=257.6
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPY-VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~-LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.|+.+.+++ +++.|...||..|+|+|.++++. ++.++++|+++|||+|||+++.++++..+.. .+.++|||+|++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~ 78 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLK 78 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChH
Confidence 577777777 99999999999999999999985 7889999999999999999999999988763 367899999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChH
Q psy8497 101 EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFV 179 (2355)
Q Consensus 101 ALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~ 179 (2355)
+|+.|+.+.+..+.. . ++++..++|+..... ....++|+|+||+++..++......+..+++|||||+|.+.+..+.
T Consensus 79 aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg 156 (720)
T PRK00254 79 ALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRG 156 (720)
T ss_pred HHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccch
Confidence 999999999988642 3 788999999875432 2345899999999998887765555788999999999999888888
Q ss_pred HHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEE-----EEeccCCCCCcchhhhHHH
Q psy8497 180 EDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQL-----VALIPECKNPSLRYVDEEK 254 (2355)
Q Consensus 180 SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQv-----VvqVpe~kn~sLt~lsKke 254 (2355)
..+..++..+....|+|++|||+++. ..+..|+....... ... ...+... ............ ......
T Consensus 157 ~~le~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~~~~-~~r---pv~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 229 (720)
T PRK00254 157 ATLEMILTHMLGRAQILGLSATVGNA--EELAEWLNAELVVS-DWR---PVKLRKGVFYQGFLFWEDGKIERF-PNSWES 229 (720)
T ss_pred HHHHHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCccccC-CCC---CCcceeeEecCCeeeccCcchhcc-hHHHHH
Confidence 99999999998889999999999752 33444554332211 111 1111110 011111100000 011123
Q ss_pred HHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc---------------------------------CCccEEeeCCCCH
Q psy8497 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA---------------------------------NFGAEYLSGAQDQ 301 (2355)
Q Consensus 255 aLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr---------------------------------GIKVarLHGgMSq 301 (2355)
.+.+++.. ..++||||++++.++.++..|... ..++.++|++|++
T Consensus 230 ~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 230 LVYDAVKK--GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHh--CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 34444442 468999999999998877666321 2368999999999
Q ss_pred HHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE-------ecC-CCCHhHHHHHhhccCCCC--CccEEEEEEcc
Q psy8497 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN-------LEI-PHDAATYLHRMGRAGRYG--TRGLVITIVSA 371 (2355)
Q Consensus 302 EERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII-------yDS-P~SPqSYIQRIGRAGRiG--QkGkVIVLVSs 371 (2355)
.+|..+++.|++|.++|||||+++++|||+|++++||. ++. +.+..+|+||+|||||.| ..|.+|+++..
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999998884 333 235779999999999976 66888888876
Q ss_pred cC
Q psy8497 372 ES 373 (2355)
Q Consensus 372 dD 373 (2355)
.+
T Consensus 388 ~~ 389 (720)
T PRK00254 388 EE 389 (720)
T ss_pred cc
Confidence 54
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=370.21 Aligned_cols=368 Identities=24% Similarity=0.395 Sum_probs=293.7
Q ss_pred cccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhc-----
Q psy8497 14 VLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKL----- 86 (2355)
Q Consensus 14 ~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ek----- 86 (2355)
.++....+..|..+.++. ++++|..+||..|+++|...||.+..+ .++|-+|+||+|||++|-|||+..|.+.
T Consensus 173 ~~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~ 252 (731)
T KOG0347|consen 173 DDSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ 252 (731)
T ss_pred ccccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh
Confidence 455566788899998888 999999999999999999999999998 7899999999999999999999966531
Q ss_pred -------CCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhh
Q psy8497 87 -------PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLK 155 (2355)
Q Consensus 87 -------r~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr 155 (2355)
....+..|||+|||+||.|+.+-+..+.... ++++..++|+-... ...+.++|||+||++|..++...
T Consensus 253 e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~ 331 (731)
T KOG0347|consen 253 ELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEED 331 (731)
T ss_pred hhhhHHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhh
Confidence 1122349999999999999999999997655 99999999996543 23345999999999999988765
Q ss_pred cc---cCcCceEEEecccchhcccChHHHHHHHHHhCC-----CCceEEEEEeccChhHHHHHH----------------
Q psy8497 156 YL---NMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-----PMKQMLVVSATYSHDNLATLQ---------------- 211 (2355)
Q Consensus 156 ~L---dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-----pnrQILLLSATLS~EILElLk---------------- 211 (2355)
.. .+.++.+|||||++||+..++...+..++..+. ...|.+.+|||+.-...+-+.
T Consensus 332 n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~ki 411 (731)
T KOG0347|consen 332 NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKI 411 (731)
T ss_pred hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHH
Confidence 43 467888999999999999998888888888774 457999999998733221111
Q ss_pred -Hh------ccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHH
Q psy8497 212 -KY------MVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICEN 284 (2355)
Q Consensus 212 -Kf------LrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADy 284 (2355)
.+ ...|.++...........+....+.|+... +-..|..+|.+.+ +++||||+++..+..|.-+
T Consensus 412 q~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e--------KD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~ 482 (731)
T KOG0347|consen 412 QHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLE--------KDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVL 482 (731)
T ss_pred HHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccc--------cceeEEEEEeecC-CceEEEechHHHHHHHHHH
Confidence 11 123344443333322222222222222111 0111223333333 6999999999999999999
Q ss_pred HHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE
Q psy8497 285 LANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364 (2355)
Q Consensus 285 LrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk 364 (2355)
|...++....||+.|.+..|.+-|+.|++..-.|||||+++++|||||.|++||+|-.|.+...|++|.||++|.+..|.
T Consensus 483 L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gv 562 (731)
T KOG0347|consen 483 LNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGV 562 (731)
T ss_pred HhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcccCHHHHHHHHHhhccccccc
Q psy8497 365 VITIVSAESLVKFHSLMGEINLDHAFN 391 (2355)
Q Consensus 365 VIVLVSsdDVEeIEsLrReLKLKLaLe 391 (2355)
.++++.+.++..+..+..-+.....+.
T Consensus 563 svml~~P~e~~~~~KL~ktL~k~~dlp 589 (731)
T KOG0347|consen 563 SVMLCGPQEVGPLKKLCKTLKKKEDLP 589 (731)
T ss_pred EEEEeChHHhHHHHHHHHHHhhccCCC
Confidence 999999999988888877666555443
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=386.53 Aligned_cols=361 Identities=29% Similarity=0.480 Sum_probs=315.9
Q ss_pred cCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc----CCCC
Q psy8497 16 SNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL----PVQQ 90 (2355)
Q Consensus 16 SsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek----r~qg 90 (2355)
..+.++++|.+.++.. |+..++++||..++|+|.+|||.|+.|++||.++.||+|||++|++|++.+.... ...+
T Consensus 359 ~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdG 438 (997)
T KOG0334|consen 359 ECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDG 438 (997)
T ss_pred CCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCC
Confidence 3568899999999999 9999999999999999999999999999999999999999999999999766532 2458
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhc---ccCcCce
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKY---LNMDSVR 163 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~---LdLSkId 163 (2355)
+-+|||+||++|+.|+.+|+++|...+ ++++++++|+...... .+...|+||||.++++++.... ..+..+.
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 889999999999999999999998886 9999999999765543 3348999999999998887643 3455666
Q ss_pred EEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCC
Q psy8497 164 LFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECK 243 (2355)
Q Consensus 164 LLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~k 243 (2355)
+||+|||++|.+.+|...+..|+..+++..|++++|||++..+..+....+..|+.+.+.........+.+.+..++...
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~ 597 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIEN 597 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCch
Confidence 99999999999999999999999999999999999999998888888888889999888877777778888887776331
Q ss_pred CCcchhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe
Q psy8497 244 NPSLRYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322 (2355)
Q Consensus 244 n~sLt~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST 322 (2355)
.+...|+.+|... ...++||||.....|+.|...|.+.|+.+..|||+.++.+|..+++.|+++.+.+||+|
T Consensus 598 -------eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaT 670 (997)
T KOG0334|consen 598 -------EKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVAT 670 (997)
T ss_pred -------HHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEeh
Confidence 2334444444322 24699999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 323 SALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
+.+++|||+..+.+||+||.|.....|++|+||+||.|..|.+++|+.+++..+.-.|...+
T Consensus 671 svvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 671 SVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred hhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997666666655544
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=384.22 Aligned_cols=332 Identities=21% Similarity=0.316 Sum_probs=239.4
Q ss_pred cHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-----CCCCeEEEEcccHHH
Q psy8497 29 EKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-----VQQPQTIILAPTREI 102 (2355)
Q Consensus 29 Lkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-----~qggRVLILVPTRAL 102 (2355)
+.+ +.+.+.. +|..|+|+|.++++.+++++++||++|||+|||++|+++++..+.... ..+.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 344 5555554 789999999999999999999999999999999999999998886421 235679999999999
Q ss_pred HHHHHHHHHH-------H----hcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcc--cCcCceEE
Q psy8497 103 AVQITDVVRS-------V----GAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYL--NMDSVRLF 165 (2355)
Q Consensus 103 AqQ~anwLRE-------F----gk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~L--dLSkIdLL 165 (2355)
+.|+.+.+.+ + +...+++.+.+.+|+..... ....++||||||++|..++....+ .+..+++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9998876543 1 23344788999999875432 223589999999999777654322 36788999
Q ss_pred EecccchhcccChHHHHHHHH----HhCCCCceEEEEEeccChhHHHHHHHhccCC--------eeeccCCCccccccce
Q psy8497 166 IMDEADKLINTGFVEDITWIY----SQLPPMKQMLVVSATYSHDNLATLQKYMVDP--------LLIRPEDATRPLLGVK 233 (2355)
Q Consensus 166 IVDEAHRLkN~GF~SrLeeIL----s~LppnrQILLLSATLS~EILElLkKfLrdP--------vIIrVesee~~~seVr 233 (2355)
||||+|.+.+..+...+..++ .......|+|++|||+.+. ..+..++... ..+. ..... ..+.
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~~~iv-~~~~~--k~~~ 251 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRDCEIV-DARFV--KPFD 251 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCceEEE-ccCCC--ccce
Confidence 999999998766554444333 3334678999999999752 2233333221 1111 00000 0000
Q ss_pred EEEEecc--CCCCC--cchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc------CCccEEeeCCCCHHH
Q psy8497 234 QLVALIP--ECKNP--SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA------NFGAEYLSGAQDQKA 303 (2355)
Q Consensus 234 QvVvqVp--e~kn~--sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr------GIKVarLHGgMSqEE 303 (2355)
.....+ ..... ..........|..++.. ..++||||+++..++.++..|... +..+..+||+|+..+
T Consensus 252 -i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~ 328 (876)
T PRK13767 252 -IKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREV 328 (876)
T ss_pred -EEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHH
Confidence 111111 00000 00011122334444433 368999999999999999999873 467999999999999
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC-CCccEEEEEE
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY-GTRGLVITIV 369 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi-GQkGkVIVLV 369 (2355)
|..+++.|++|.++|||||+++++|||+|.+++||+++.|.+...|+||+|||||. |.....++++
T Consensus 329 R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 329 RLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred HHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999986 4444444444
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=357.48 Aligned_cols=349 Identities=28% Similarity=0.430 Sum_probs=272.1
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHc---------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLN---------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLS---------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
+...+.+.++..++|+|..+++|++. .+++.|.||||+|||++|.|||++.|........++|||+|+++|
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTREL 227 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHH
Confidence 44568889999999999999999964 468999999999999999999999999776778899999999999
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEECCccccCCC---------CCCcEEEECHHHHHHHHH-hhcccCcCceEEEecccch
Q psy8497 103 AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK---------RPVQIVVGSPGRIKQMIK-LKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 103 AqQ~anwLREFgk~APgLrVVvytGGkq~rkqi---------rq~DILVTTPErLLDLLd-rr~LdLSkIdLLIVDEAHR 172 (2355)
+.|+++.|.++.... ++.|..+.|....+... ...+|||+||++|.+++. ...+.+..+.+||||||+|
T Consensus 228 ~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADR 306 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADR 306 (620)
T ss_pred HHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHH
Confidence 999999999998777 88888888876544221 126999999999999998 4778899999999999999
Q ss_pred hcccChHHHHHHHHHhCC----------------------------------CCceEEEEEeccChhHHHHHHHhccCCe
Q psy8497 173 LINTGFVEDITWIYSQLP----------------------------------PMKQMLVVSATYSHDNLATLQKYMVDPL 218 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~Lp----------------------------------pnrQILLLSATLS~EILElLkKfLrdPv 218 (2355)
|++..|..-+-.+...+. +..+.+++|||+.+.-..+...-+..|.
T Consensus 307 ll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Pr 386 (620)
T KOG0350|consen 307 LLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPR 386 (620)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCc
Confidence 998765444333332221 1123456666666554444444444443
Q ss_pred eeccCCCccccccceEEEEeccCCCCCcchh---hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHH----hcCCc
Q psy8497 219 LIRPEDATRPLLGVKQLVALIPECKNPSLRY---VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLA----NANFG 291 (2355)
Q Consensus 219 IIrVesee~~~seVrQvVvqVpe~kn~sLt~---lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLr----ErGIK 291 (2355)
...+.... .....++......... ..+...+..++......++|+|+++...+..|+..|. ...++
T Consensus 387 l~~v~~~~-------~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~ 459 (620)
T KOG0350|consen 387 LFHVSKPL-------IGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFK 459 (620)
T ss_pred eEEeeccc-------ceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccch
Confidence 33222100 0011111111111111 1233556677777777899999999999999998887 23567
Q ss_pred cEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 292 AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 292 VarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+-.+.|.+....|..+++.|+.|++.||||++++++|||+.+++.||+||+|.+...|++|+||++|.|+.|.++.+...
T Consensus 460 ~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~ 539 (620)
T KOG0350|consen 460 VSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDK 539 (620)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecc
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhhcccc
Q psy8497 372 ESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 372 dDVEeIEsLrReLKLKL 388 (2355)
.+...+..++.....-.
T Consensus 540 ~~~r~F~klL~~~~~~d 556 (620)
T KOG0350|consen 540 HEKRLFSKLLKKTNLWD 556 (620)
T ss_pred ccchHHHHHHHHhcccC
Confidence 99999888887766543
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=365.46 Aligned_cols=342 Identities=17% Similarity=0.200 Sum_probs=249.5
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
.|.++++++ +++.+...+|. |+++|.++++.+..++++||++|||+|||+++.++++..+.. ++++|||+|+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~----~~k~v~i~P~ra 76 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA----GLKSIYIVPLRS 76 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh----CCcEEEEechHH
Confidence 567777777 99999999985 999999999999999999999999999999999999887763 568999999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHH
Q psy8497 102 IAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVE 180 (2355)
Q Consensus 102 LAqQ~anwLREFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~S 180 (2355)
|+.|+.+.+.++.. . ++.+...+|+..... ....++|+|+||+++..++......+..+++|||||+|.+.+..+..
T Consensus 77 La~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~ 154 (674)
T PRK01172 77 LAMEKYEELSRLRS-L-GMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGP 154 (674)
T ss_pred HHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccH
Confidence 99999999988642 3 678888888765432 23458999999999988877655557889999999999998777666
Q ss_pred HHHHHHHh---CCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCC-CCCcc-hhhhHHHH
Q psy8497 181 DITWIYSQ---LPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPEC-KNPSL-RYVDEEKK 255 (2355)
Q Consensus 181 rLeeILs~---LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~-kn~sL-t~lsKkea 255 (2355)
.+..++.. +.+..|+|++|||+++. ..+..|+....+. .... ...+...+...... ..... ........
T Consensus 155 ~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~~~-~~~r---~vpl~~~i~~~~~~~~~~~~~~~~~~~~~ 228 (674)
T PRK01172 155 TLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASLIK-SNFR---PVPLKLGILYRKRLILDGYERSQVDINSL 228 (674)
T ss_pred HHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCccC-CCCC---CCCeEEEEEecCeeeecccccccccHHHH
Confidence 66665543 45678999999999742 3344455433211 1111 11111111000000 00000 00011122
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc-------------------------CCccEEeeCCCCHHHHHHHHHH
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANA-------------------------NFGAEYLSGAQDQKARLASLDS 310 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr-------------------------GIKVarLHGgMSqEERqeILEr 310 (2355)
+...+. ..+++||||++++.++.++..|... ..++.++||+|+..+|..+++.
T Consensus 229 i~~~~~--~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~ 306 (674)
T PRK01172 229 IKETVN--DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEM 306 (674)
T ss_pred HHHHHh--CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHH
Confidence 222222 3469999999999999999888653 1357899999999999999999
Q ss_pred HhCCCccEEEEecccccccCCCCccEEEEecC---------CCCHhHHHHHhhccCCCCC--ccEEEEEEcccC-HHHHH
Q psy8497 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEI---------PHDAATYLHRMGRAGRYGT--RGLVITIVSAES-LVKFH 378 (2355)
Q Consensus 311 FRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS---------P~SPqSYIQRIGRAGRiGQ--kGkVIVLVSsdD-VEeIE 378 (2355)
|++|.++|||||+++++|||+|+. .||+.+. |.++.+|.||+|||||.|. .|.+++++.... ...+.
T Consensus 307 f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~ 385 (674)
T PRK01172 307 FRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAK 385 (674)
T ss_pred HHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHH
Confidence 999999999999999999999986 5555543 4588999999999999884 566777765433 33344
Q ss_pred HH
Q psy8497 379 SL 380 (2355)
Q Consensus 379 sL 380 (2355)
.+
T Consensus 386 ~~ 387 (674)
T PRK01172 386 KY 387 (674)
T ss_pred HH
Confidence 43
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=375.68 Aligned_cols=345 Identities=15% Similarity=0.189 Sum_probs=258.0
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|.+||..+|.|+.+ +-+.|++++||+||| ++.|+++.+|++.....+++|||||+.+| .+|-.+|..|+
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKT-IQtIsLitYLmE~K~~~GP~LvivPlstL----~NW~~Ef~kWa 467 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKT-IQTISLITYLMEHKQMQGPFLIIVPLSTL----VNWSSEFPKWA 467 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchH-HHHHHHHHHHHHHcccCCCeEEecccccc----CCchhhccccc
Confidence 5999999999999985 346999999999999 55668888998877888899999999999 89999999999
Q ss_pred CCcEEEEEECCccccCCC------CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 118 KNLHVDYFIGGTQVERPK------RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqi------rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
|.+..+.|.|....+..+ ..|+||+|||+.+.. ....+....|.+|||||.|+|++.. ..+...+.....
T Consensus 468 PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 468 PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYR 543 (1157)
T ss_pred cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhcccc
Confidence 999999999998766433 339999999999854 5556667889999999999999865 667666665444
Q ss_pred CceEEEEEeccChhHHHHHHHhcc------------------CCeeecc-----CCCc----------------------
Q psy8497 192 MKQMLVVSATYSHDNLATLQKYMV------------------DPLLIRP-----EDAT---------------------- 226 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKfLr------------------dPvIIrV-----esee---------------------- 226 (2355)
....+++|+||.++.+..++.+|. .|+.-.- ..+.
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 556688888887665554443321 1100000 0000
Q ss_pred ----cccc-----------c----------------------------ceEEEEeccC-CCCCc----------------
Q psy8497 227 ----RPLL-----------G----------------------------VKQLVALIPE-CKNPS---------------- 246 (2355)
Q Consensus 227 ----~~~s-----------e----------------------------VrQvVvqVpe-~kn~s---------------- 246 (2355)
..+. . +...+.++.. |..++
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~ 703 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIK 703 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChh
Confidence 0000 0 0000000000 00000
Q ss_pred --chhhhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC---CccEE
Q psy8497 247 --LRYVDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG---KVRIL 319 (2355)
Q Consensus 247 --Lt~lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG---EIdVL 319 (2355)
+....+...|..+|... .+|+||+|+++...+++|.+||...++++.+++|.+...+|-..++.|+.. .+.||
T Consensus 704 dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fl 783 (1157)
T KOG0386|consen 704 DLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFL 783 (1157)
T ss_pred HHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeee
Confidence 11112334444444433 357999999999999999999999999999999999999999999999964 45689
Q ss_pred EEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccCCC
Q psy8497 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLV 395 (2355)
Q Consensus 320 VSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~eIV 395 (2355)
++|++++.|||++.+++||+||.+|+|+.++|+..||||+|+...|.++.........+.++.....++.....++
T Consensus 784 lstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kvi 859 (1157)
T KOG0386|consen 784 LSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVI 859 (1157)
T ss_pred eeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhh
Confidence 9999999999999999999999999999999999999999998888888877777777777776555554444444
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=368.25 Aligned_cols=312 Identities=19% Similarity=0.204 Sum_probs=244.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+......++| +|+++|.++++.++.+ .++||+++||+|||++++++++..+.. +.++||||||++|+.|
T Consensus 441 ~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----g~qvlvLvPT~~LA~Q 515 (926)
T TIGR00580 441 QQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----GKQVAVLVPTTLLAQQ 515 (926)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----CCeEEEEeCcHHHHHH
Confidence 3444445788 6999999999999874 689999999999999999999888763 5789999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+++.+++++... ++++.+++|...... ....++|||+||..+ ...+.+.++++|||||+|++.
T Consensus 516 ~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg--- 586 (926)
T TIGR00580 516 HFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG--- 586 (926)
T ss_pred HHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc---
Confidence 999999987766 678888887654221 112489999999533 234567889999999999842
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHH
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLL 257 (2355)
......+..++...|+|+|||||.+..+......+.++.++....... ..+...+.... .......+.
T Consensus 587 --v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~--------~~~i~~~i~ 654 (926)
T TIGR00580 587 --VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYD--------PELVREAIR 654 (926)
T ss_pred --hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecC--------HHHHHHHHH
Confidence 344556677778899999999998877666555555555554332211 12222222111 011122333
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
..+. ..++++|||++++.++.+++.|... ++++..+||.|++.+|..+++.|++|+++|||||+++++|||+|.++
T Consensus 655 ~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~ 732 (926)
T TIGR00580 655 RELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNAN 732 (926)
T ss_pred HHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCC
Confidence 3333 3469999999999999999999985 78899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 336 LVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 336 TVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+||++++|. ...+|.|++||+||.|+.|.|++++..
T Consensus 733 ~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 733 TIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred EEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 999999975 678999999999999999999999854
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=358.59 Aligned_cols=329 Identities=21% Similarity=0.315 Sum_probs=259.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC----CCCCeEEEEcccHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP----VQQPQTIILAPTREIAVQIT 107 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr----~qggRVLILVPTRALAqQ~a 107 (2355)
+++.+... |..|+|.|.+|++.+.+|+|++|.+|||+|||++++++++..|.... ..+-.+|||.|+++|...+.
T Consensus 12 v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~ 90 (814)
T COG1201 12 VREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIR 90 (814)
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHH
Confidence 88888888 99999999999999999999999999999999999999999998652 33467999999999999999
Q ss_pred HHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhh--cccCcCceEEEecccchhcccChHHH
Q psy8497 108 DVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLK--YLNMDSVRLFIMDEADKLINTGFVED 181 (2355)
Q Consensus 108 nwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr--~LdLSkIdLLIVDEAHRLkN~GF~Sr 181 (2355)
..++.++... ++.+.+-+|+..... ..+++||+|||||.|.-++... .-.+.++.++||||+|.+.+...+..
T Consensus 91 ~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~ 169 (814)
T COG1201 91 RRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQ 169 (814)
T ss_pred HHHHHHHHHc-CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchh
Confidence 9999998877 899999999976542 3445999999999997776542 22478899999999999997766555
Q ss_pred HHHHHHhC---CCCceEEEEEeccChhHHHHHHHhccCC----eeeccCCCccccccceEEEEeccCCC--CCcchhhhH
Q psy8497 182 ITWIYSQL---PPMKQMLVVSATYSHDNLATLQKYMVDP----LLIRPEDATRPLLGVKQLVALIPECK--NPSLRYVDE 252 (2355)
Q Consensus 182 LeeILs~L---ppnrQILLLSATLS~EILElLkKfLrdP----vIIrVesee~~~seVrQvVvqVpe~k--n~sLt~lsK 252 (2355)
+...+..+ ....|.|+||||..+ ...+.+|+... .++.+...... ++....+... .........
T Consensus 170 Lsl~LeRL~~l~~~~qRIGLSATV~~--~~~varfL~g~~~~~~Iv~~~~~k~~-----~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 170 LALSLERLRELAGDFQRIGLSATVGP--PEEVAKFLVGFGDPCEIVDVSAAKKL-----EIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred hhhhHHHHHhhCcccEEEeehhccCC--HHHHHHHhcCCCCceEEEEcccCCcc-----eEEEEecCCccccccchhHHH
Confidence 54444433 337899999999983 34445555432 23333322211 1111222111 111122334
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN-FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG-IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
...+..++... ..+|||++|+.+++.|+..|.+.+ ..+..+||+++.+.|..+.++|++|+++++|||+.++.|||+
T Consensus 243 ~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 243 YERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 45566666554 389999999999999999999987 889999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCC-CCCccEEEEEEcc
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGR-YGTRGLVITIVSA 371 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGR-iGQkGkVIVLVSs 371 (2355)
..+++||++.+|.+...++||+||+|+ .+...+.+++...
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999985 5666777777655
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=369.17 Aligned_cols=312 Identities=19% Similarity=0.188 Sum_probs=246.7
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
..+.+..++| .|+++|.++++.++.+ .++||+++||+|||++++.+++..+. .+.++||||||++|+.|
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----~g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----NHKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHH
Confidence 5666777888 8999999999999986 78999999999999999988876654 47889999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+++.+.+++... ++++.+++|....... ...++|||+||+.+. ..+.+..+++|||||+|++.
T Consensus 665 ~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG--- 735 (1147)
T PRK10689 665 HYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG--- 735 (1147)
T ss_pred HHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc---
Confidence 999999876555 5778788776543211 124799999997442 23456789999999999962
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHH
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLL 257 (2355)
......+..++...|+|+|||||.+....+....+.++.++...... ...+...+..... ......++
T Consensus 736 --~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~--------~~~k~~il 803 (1147)
T PRK10689 736 --VRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDS--------LVVREAIL 803 (1147)
T ss_pred --hhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCc--------HHHHHHHH
Confidence 22345567788889999999999988877777677777766543322 1223333222111 11122333
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
..+. ..++++|||++++.++.+++.|.+. ++++..+||+|++.+|..++..|++|+++|||||+++++|||+|.++
T Consensus 804 ~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 804 REIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred HHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCC
Confidence 3333 2469999999999999999999987 78899999999999999999999999999999999999999999999
Q ss_pred EEEEecCC-CCHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 336 LVINLEIP-HDAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 336 TVIIyDSP-~SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+||+.+++ +...+|+|++||+||.|+.+.+++++..
T Consensus 882 ~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99988775 5788999999999999999999998854
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=348.93 Aligned_cols=357 Identities=28% Similarity=0.393 Sum_probs=300.5
Q ss_pred cccccCcccC----CcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC----C
Q psy8497 18 IDVLFENDVL----IEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP----V 88 (2355)
Q Consensus 18 iDkV~SFEeL----lLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr----~ 88 (2355)
..++.+|..+ ...+ |+..+...+|..|+|+|.++++.++..++++.|+|||+|||++|.++++..|.... .
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 4567777763 2333 89999999999999999999999999999999999999999999999999998644 5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHh--cccCCcEEEEEECCccccC-----CCCCCcEEEECHHHHHHHHHhhc--ccC
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVG--AHVKNLHVDYFIGGTQVER-----PKRPVQIVVGSPGRIKQMIKLKY--LNM 159 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFg--k~APgLrVVvytGGkq~rk-----qirq~DILVTTPErLLDLLdrr~--LdL 159 (2355)
.+-+++||.|+++|+.|++..+.++. ... .++++.+........ ....++|+|.||-+|..++.... +.+
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 67889999999999999999999986 333 344444443322211 12238999999999988887654 678
Q ss_pred cCceEEEecccchhccc-ChHHHHHHHHHhCC-CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEE
Q psy8497 160 DSVRLFIMDEADKLINT-GFVEDITWIYSQLP-PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~-GF~SrLeeILs~Lp-pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVv 237 (2355)
..+.++|+||+++|.+. .|..++..|+..+. +...+-++|||.+.++.+++...+.....+.+.........+.|-..
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qelv 366 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELV 366 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhe
Confidence 99999999999999998 88999999988864 45677889999999999999888887777766665555555666555
Q ss_pred eccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHH-HhcCCccEEeeCCCCHHHHHHHHHHHhCCCc
Q psy8497 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENL-ANANFGAEYLSGAQDQKARLASLDSFKRGKV 316 (2355)
Q Consensus 238 qVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyL-rErGIKVarLHGgMSqEERqeILErFRSGEI 316 (2355)
++... ..+...+.+++...-..++|||+++.+.+..|...| ...++.+.++||..++.+|..++++|+.|++
T Consensus 367 F~gse-------~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 367 FCGSE-------KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred eeecc-------hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 55444 345667777777776679999999999999999999 7889999999999999999999999999999
Q ss_pred cEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 317 dVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
.|||||+++++|||+.++++||+||.|.+..+|++||||+||.|+.|.+|.|++..+...+..+..
T Consensus 440 wvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 440 WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred eEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999988877766644
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=341.39 Aligned_cols=359 Identities=28% Similarity=0.411 Sum_probs=318.1
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
.-.|+++++.. +++.|...||..|+|+|++.+|.++++++++-.+-||+|||.+++++++..|......+.++||++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 57899999999 99999999999999999999999999999999999999999999999999998766667899999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+.|..+.+++++... ++++++++|+..... ....++||++||.++..+.-.-.+.+..+.+||+||+++|..
T Consensus 100 reLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfe 178 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFE 178 (529)
T ss_pred HHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHh
Confidence 999999999999999888 888888888765443 233589999999998877666567899999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
.+|..++..++..++...|.++||||++..+..+.+.-+..|+.++++.+......++.....+... .+...
T Consensus 179 mgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a--------~K~aa 250 (529)
T KOG0337|consen 179 MGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA--------EKEAA 250 (529)
T ss_pred hhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH--------HHHHH
Confidence 9999999999999999999999999999999999999999999998776655444444444433332 45667
Q ss_pred HHHHHhcCC-CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc
Q psy8497 256 LVQLLSQTP-FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334 (2355)
Q Consensus 256 LLqLLerl~-kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV 334 (2355)
|+.++.... ..++|||+.+...++-+...|...|+.+..++|.|++.-|..-+..|+.+...+||.|+++.+|+|+|-.
T Consensus 251 Ll~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipll 330 (529)
T KOG0337|consen 251 LLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLL 330 (529)
T ss_pred HHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccc
Confidence 777776543 3589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 335 DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 335 DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
+.||+||.|..+.-|++|+||+.|.|..|..|.++..++..++-.+...+...+
T Consensus 331 dnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~ 384 (529)
T KOG0337|consen 331 DNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPL 384 (529)
T ss_pred cccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCce
Confidence 999999999999999999999999999999999999998888777765555444
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=347.56 Aligned_cols=312 Identities=20% Similarity=0.268 Sum_probs=233.1
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+...+..++| +|+++|.++++.+..+ .++||++|||+|||++|+++++..+. .+.++|||+||++|+.|
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----~g~q~lilaPT~~LA~Q 325 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----AGYQAALMAPTEILAEQ 325 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----cCCeEEEEeccHHHHHH
Confidence 4555566787 7999999999999876 37999999999999999999988776 37789999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+.+.+++++... ++++.+++|+..... ....++|||+||..+.. .+.+..+++|||||+|++..
T Consensus 326 ~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~-- 397 (681)
T PRK10917 326 HYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV-- 397 (681)
T ss_pred HHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH--
Confidence 999999998776 789999999876321 12248999999987643 23467889999999998642
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHH
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLL 257 (2355)
.....+......+++|+|||||.+...........+...+. ........+...+. .... .......+.
T Consensus 398 ---~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~--~~p~~r~~i~~~~~--~~~~-----~~~~~~~i~ 465 (681)
T PRK10917 398 ---EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVID--ELPPGRKPITTVVI--PDSR-----RDEVYERIR 465 (681)
T ss_pred ---HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEe--cCCCCCCCcEEEEe--Cccc-----HHHHHHHHH
Confidence 22333444455689999999998765543332111222211 11111111222211 1110 011123333
Q ss_pred HHHhcCCCCeEEEEEcccc--------cHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 258 QLLSQTPFNQCVIFSNYQL--------RPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTRK--------mAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
..+. ...+++|||+.++ .++.+++.|... ++.+..+||+|+..+|..+++.|++|+++|||||+++++
T Consensus 466 ~~~~--~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 466 EEIA--KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHH--cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 3332 3469999999654 345677777765 478999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEc
Q psy8497 328 GIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVS 370 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVS 370 (2355)
|||+|++++||++++|. ...++.|++||+||.|..+.|++++.
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999999986 67899999999999999999999995
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=353.53 Aligned_cols=321 Identities=16% Similarity=0.207 Sum_probs=229.1
Q ss_pred CCcHHHHHHHHHHHcC---CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNG---YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG---RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg 119 (2355)
.|+|||++++.+++.+ +.+||++|||+|||++++.++... ..++|||||+..|+.||.+.+.+|... +.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-------~k~tLILvps~~Lv~QW~~ef~~~~~l-~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-------KKSCLVLCTSAVSVEQWKQQFKMWSTI-DD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-------CCCEEEEeCcHHHHHHHHHHHHHhcCC-CC
Confidence 4799999999998853 368999999999999988665432 356999999999999999999998533 35
Q ss_pred cEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh--------hcccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 120 LHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL--------KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 120 LrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr--------r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
..+..++|+..... .....|+|+||+++.....+ ..+....|++||+||||++... .+..++..+.
T Consensus 327 ~~I~~~tg~~k~~~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr~il~~l~- 400 (732)
T TIGR00603 327 SQICRFTSDAKERF-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFRRVLTIVQ- 400 (732)
T ss_pred ceEEEEecCccccc-ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHHHHHHhcC-
Confidence 66777777654321 22368999999988532111 2334467999999999998653 3444555553
Q ss_pred CceEEEEEeccChhHHHHH-HHhccCCeeeccCC----CccccccceEEEEeccCCCCCcchhh---------------h
Q psy8497 192 MKQMLVVSATYSHDNLATL-QKYMVDPLLIRPED----ATRPLLGVKQLVALIPECKNPSLRYV---------------D 251 (2355)
Q Consensus 192 nrQILLLSATLS~EILElL-kKfLrdPvIIrVes----ee~~~seVrQvVvqVpe~kn~sLt~l---------------s 251 (2355)
....|+|||||..+..... ..++..|.++...- .......+....++++.....+..+. .
T Consensus 401 a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~ 480 (732)
T TIGR00603 401 AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPN 480 (732)
T ss_pred cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChH
Confidence 4467999999985433211 13344555544321 12233344444444443211111100 1
Q ss_pred HHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC-CccEEEEecccccc
Q psy8497 252 EEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG-KVRILVTTDLAARG 328 (2355)
Q Consensus 252 KkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG-EIdVLVSTSALGEG 328 (2355)
+...+..++... ...++||||.++..++.++..|. +.+|||.++..+|..+++.|+.+ .+++||+|+++.+|
T Consensus 481 K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 481 KFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 223333344322 55799999999999988888773 57799999999999999999965 88999999999999
Q ss_pred cCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCc-------cEEEEEEcccCHHHHHHHHH
Q psy8497 329 IDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTR-------GLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 329 LDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQk-------GkVIVLVSsdDVEeIEsLrR 382 (2355)
||+|++++||++++|+ |+.+|+||+||++|.+.. ..++.|++.++.++.....+
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~R 617 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKR 617 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHH
Confidence 9999999999999986 999999999999997643 45688999999888665543
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=332.23 Aligned_cols=331 Identities=22% Similarity=0.304 Sum_probs=250.7
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
..+++.||.......+.+ |++|+.|||+|||+++++.+..+|.+ .++++|+|+||+.|+.|..+.++++... |.-
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~---~~~kvlfLAPTKPLV~Qh~~~~~~v~~i-p~~ 87 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW---FGGKVLFLAPTKPLVLQHAEFCRKVTGI-PED 87 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh---cCCeEEEecCCchHHHHHHHHHHHHhCC-Chh
Confidence 348899999988887766 89999999999999999999988885 2338999999999999999999999644 467
Q ss_pred EEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 121 HVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 121 rVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
.++.++|...... ......|+|+||+.+.+-+..+.+++.++.+||||||||...+.-+..+...+......+.+|+
T Consensus 88 ~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 88 EIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred heeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEE
Confidence 7889999875442 2234789999999999999999999999999999999998877777777777777777889999
Q ss_pred EEeccChhHH---HHHHHhccCCeeeccCCCccccccceE-----EEEe----------------------------ccC
Q psy8497 198 VSATYSHDNL---ATLQKYMVDPLLIRPEDATRPLLGVKQ-----LVAL----------------------------IPE 241 (2355)
Q Consensus 198 LSATLS~EIL---ElLkKfLrdPvIIrVesee~~~seVrQ-----vVvq----------------------------Vpe 241 (2355)
|||||..... +.+..+....+.++.....+...-+.. +.+. ...
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~ 247 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIES 247 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 9999986543 333333333333333222111000000 0000 000
Q ss_pred C-------------------CC-Ccc------------------------------hhh---------------------
Q psy8497 242 C-------------------KN-PSL------------------------------RYV--------------------- 250 (2355)
Q Consensus 242 ~-------------------kn-~sL------------------------------t~l--------------------- 250 (2355)
. .. ... .++
T Consensus 248 ~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 248 SSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred cCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcC
Confidence 0 00 000 000
Q ss_pred --------------------hHHHHHH----HHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccE-Eee--------C
Q psy8497 251 --------------------DEEKKLV----QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAE-YLS--------G 297 (2355)
Q Consensus 251 --------------------sKkeaLL----qLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVa-rLH--------G 297 (2355)
.++..+. +.+......|+|||++.+..++.+.++|...+..+. ++- .
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~ 407 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDK 407 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccccc
Confidence 0111122 222233446999999999999999999999988774 322 4
Q ss_pred CCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHH
Q psy8497 298 AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377 (2355)
Q Consensus 298 gMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeI 377 (2355)
||++.++.++|+.|+.|+++|||||+++++|||+|++|+||+|++-.|+..++||+||+|| ++.|.|++++...+..+.
T Consensus 408 GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR-~r~Grv~vLvt~gtrdea 486 (542)
T COG1111 408 GMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKGRVVVLVTEGTRDEA 486 (542)
T ss_pred ccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc-CCCCeEEEEEecCchHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999 599999999988765553
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=341.77 Aligned_cols=313 Identities=20% Similarity=0.252 Sum_probs=229.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+.+.+..++| +|+++|.++++.++.+ .+.||++|||+|||++|+++++..+. .+.++|||+||++|+.|
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~----~g~qvlilaPT~~LA~Q 299 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE----AGYQVALMAPTEILAEQ 299 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH----cCCcEEEECCHHHHHHH
Confidence 5667778898 8999999999999875 25899999999999999999988776 36789999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+.+.+++++... ++++.+++|+..... ....++|||+||..+.. .+.+..+++|||||+|++....
T Consensus 300 ~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 300 HYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH
Confidence 999999988766 789999999865432 12247999999987643 2346788999999999864221
Q ss_pred hHHHHHHHHHhCC--CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 178 FVEDITWIYSQLP--PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 178 F~SrLeeILs~Lp--pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
...+..... ..+++|+|||||.+...........+...+.. .......+...+ +... . .......
T Consensus 374 ----r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~--~p~~r~~i~~~~--~~~~---~--~~~~~~~ 440 (630)
T TIGR00643 374 ----RKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDE--LPPGRKPITTVL--IKHD---E--KDIVYEF 440 (630)
T ss_pred ----HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeecc--CCCCCCceEEEE--eCcc---h--HHHHHHH
Confidence 112222222 25789999999876554432211111111111 000011122211 1111 0 0111122
Q ss_pred HHHHHhcCCCCeEEEEEcccc--------cHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQL--------RPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRK--------mAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL 325 (2355)
+...+. ...+++|||+.+. .++.+++.|... ++.+..+||+|+..+|..+++.|++|+++|||||+++
T Consensus 441 i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 441 IEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 222222 3468999998764 455667777653 6789999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEc
Q psy8497 326 ARGIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVS 370 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVS 370 (2355)
++|||+|++++||+++.|. +..++.|++||+||.|+.+.|++++.
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999985 78899999999999999999999983
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=364.41 Aligned_cols=323 Identities=20% Similarity=0.259 Sum_probs=226.2
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|++||.++++||+ .+.++||+++||+|||++++ +++.++.......+++|||||.+.| .+|..++..|+|
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~~~~gp~LIVvP~SlL----~nW~~Ei~kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYRGITGPHMVVAPKSTL----GNWMNEIRRFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhcCCCCCEEEEeChHHH----HHHHHHHHHHCC
Confidence 79999999999997 46789999999999997655 5555665444456789999999776 555555556678
Q ss_pred CcEEEEEECCccccC-------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 119 NLHVDYFIGGTQVER-------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 119 gLrVVvytGGkq~rk-------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
.+.++.++|....+. ....++||||||+++.... ..+....|++|||||||++++.. +.+..++..+.
T Consensus 244 ~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~--~~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~- 318 (1033)
T PLN03142 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK--TALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFS- 318 (1033)
T ss_pred CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH--HHhccCCCCEEEEcCccccCCHH--HHHHHHHHHhh-
Confidence 889999999864321 1234899999999986433 34445678999999999999865 55666666665
Q ss_pred CceEEEEEeccChhHHHHHHHhcc--CC----------------------------------eeeccCCCc--cccccce
Q psy8497 192 MKQMLVVSATYSHDNLATLQKYMV--DP----------------------------------LLIRPEDAT--RPLLGVK 233 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKfLr--dP----------------------------------vIIrVesee--~~~seVr 233 (2355)
....|+||+||.++....+..++. .| ++++..... ...+...
T Consensus 319 a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~ 398 (1033)
T PLN03142 319 TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKK 398 (1033)
T ss_pred cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCce
Confidence 345688999998765544433221 11 010000000 0011111
Q ss_pred EEEEeccCCC--------------------------------------CCc-----------------chhhhHHHHHHH
Q psy8497 234 QLVALIPECK--------------------------------------NPS-----------------LRYVDEEKKLVQ 258 (2355)
Q Consensus 234 QvVvqVpe~k--------------------------------------n~s-----------------Lt~lsKkeaLLq 258 (2355)
..+..+.... .+. .....++..|..
T Consensus 399 e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdk 478 (1033)
T PLN03142 399 ETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDK 478 (1033)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHH
Confidence 1111111100 000 000112222333
Q ss_pred HHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC---CccEEEEecccccccCCCC
Q psy8497 259 LLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG---KVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 259 LLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG---EIdVLVSTSALGEGLDLPa 333 (2355)
+|... .+++||||+++..++++|.++|...++.+.+|+|+++..+|..+++.|+.. .+.|||+|.++++||||+.
T Consensus 479 LL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 479 LLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred HHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 33222 346999999999999999999999999999999999999999999999863 3567999999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEE--EEcccCHH
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT--IVSAESLV 375 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIV--LVSsdDVE 375 (2355)
+++||+||+||||..++|++|||+|+||...|.+ |+...+++
T Consensus 559 Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 559 ADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred CCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 9999999999999999999999999998765554 44555443
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=341.34 Aligned_cols=320 Identities=21% Similarity=0.286 Sum_probs=253.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+..+++-|.++|..++.++++|+..|||.||++||.+|++-. .+.+|||.|+.+|+..+.+.++..
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------~G~TLVVSPLiSLM~DQV~~l~~~----- 80 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------EGLTLVVSPLISLMKDQVDQLEAA----- 80 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------CCCEEEECchHHHHHHHHHHHHHc-----
Confidence 79999999999999999999999999999999999999999733 457999999999999999999887
Q ss_pred CcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC--h---HHHHHHH
Q psy8497 119 NLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG--F---VEDITWI 185 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G--F---~SrLeeI 185 (2355)
++.+..+.+.-.... .....+||+.+||+|..-.....+....+.++||||||++..|| | +..+..+
T Consensus 81 Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l 160 (590)
T COG0514 81 GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRL 160 (590)
T ss_pred CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHH
Confidence 456666665533221 11237899999999876555555567788899999999999997 5 4555556
Q ss_pred HHhCCCCceEEEEEeccChhHHHHHHHhccCCe-eeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHH--hc
Q psy8497 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPL-LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL--SQ 262 (2355)
Q Consensus 186 Ls~LppnrQILLLSATLS~EILElLkKfLrdPv-IIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLL--er 262 (2355)
...++ ..+++.||||.++.+...+...|.-.. .+.......+ ++...+..... ....+.-+. ..
T Consensus 161 ~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp--Ni~~~v~~~~~----------~~~q~~fi~~~~~ 227 (590)
T COG0514 161 RAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP--NLALKVVEKGE----------PSDQLAFLATVLP 227 (590)
T ss_pred HhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc--hhhhhhhhccc----------HHHHHHHHHhhcc
Confidence 66665 789999999999988877776554221 1111111111 11111111100 112222222 13
Q ss_pred CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC
Q psy8497 263 TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI 342 (2355)
Q Consensus 263 l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS 342 (2355)
......||||.+++.++.++.+|...|+.+..+|++|..++|..+.+.|..+++.|+|||.|.++|||-|++.+||+|++
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh
Q psy8497 343 PHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 343 P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
|.++..|.|-+|||||.|.+..+++|+...+......++..
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999888877666554
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=343.02 Aligned_cols=312 Identities=18% Similarity=0.237 Sum_probs=228.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCC-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 39 NGFVKESPIQMAAFPYVLNGY-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGR-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.||. |+|||.++++.++.|+ ++++++|||+|||.++.+.++. +........++|++||+++|+.|+.+.+++++..+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~-~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLA-VEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcc-ccccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 5886 9999999999999998 5777899999999865544442 22111222345557799999999999999998755
Q ss_pred C----------------------CcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcc--------------
Q psy8497 118 K----------------------NLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYL-------------- 157 (2355)
Q Consensus 118 P----------------------gLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~L-------------- 157 (2355)
+ .+++..++|+..... ....++|||+|++.+. .+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~----sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG----SRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc----CCccccccccccccccch
Confidence 2 488999999976542 2344899999976543 3332
Q ss_pred --cCcCceEEEecccchhcccChHHHHHHHHHhC--CCC---ceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccc
Q psy8497 158 --NMDSVRLFIMDEADKLINTGFVEDITWIYSQL--PPM---KQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLL 230 (2355)
Q Consensus 158 --dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L--ppn---rQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~s 230 (2355)
.+..+.+||||||| ++.+|...+..|+..+ ++. .|+++||||++.++......++..+..+.+........
T Consensus 166 ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ 243 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAK 243 (844)
T ss_pred hhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccccc
Confidence 25778999999999 5678999999999975 332 69999999999877777667776666555443322222
Q ss_pred cceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHH-----
Q psy8497 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL----- 305 (2355)
Q Consensus 231 eVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERq----- 305 (2355)
.+.+++ .+... .........+..++. ....++||||++++.++.|+..|...++ ..|||.|++.+|.
T Consensus 244 ki~q~v-~v~~e----~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 244 KIVKLV-PPSDE----KFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred ceEEEE-ecChH----HHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHH
Confidence 333321 11111 011111222323332 3456899999999999999999998876 8999999999999
Q ss_pred HHHHHHhC----CC-------ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCcc-EEEEEE
Q psy8497 306 ASLDSFKR----GK-------VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG-LVITIV 369 (2355)
Q Consensus 306 eILErFRS----GE-------IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkG-kVIVLV 369 (2355)
.+++.|+. +. ..|||||+++++||||+. ++||+...| ...|+||+||++|.|..+ ..+.++
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 78999987 43 689999999999999986 888887766 689999999999998753 334444
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=326.90 Aligned_cols=308 Identities=17% Similarity=0.177 Sum_probs=216.7
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
..|++||.++++.++.+.++|+++|||+|||+++...+ ..+.. ....++|||||+++|+.||.+.+++++.. +...
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~-~~~~ 188 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLF-PREA 188 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhccc-cccc
Confidence 58999999999999999999999999999998765433 22222 22348999999999999999999998643 3444
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
+..+.++.... ...+|+|+||+.|..... ..+..+++|||||||++.... +..++..++...++++||||
T Consensus 189 ~~~i~~g~~~~---~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLTAT 258 (501)
T PHA02558 189 MHKIYSGTAKD---TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLTGS 258 (501)
T ss_pred eeEEecCcccC---CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchh----HHHHHHhhhccceEEEEecc
Confidence 54555554332 347899999999865432 135688999999999987543 45666667667889999999
Q ss_pred cChhHHHHHH-HhccCCeeeccCCCc----cccccceEEEEeccCC-------CCCcch----h----hhHHHHHHHHHh
Q psy8497 202 YSHDNLATLQ-KYMVDPLLIRPEDAT----RPLLGVKQLVALIPEC-------KNPSLR----Y----VDEEKKLVQLLS 261 (2355)
Q Consensus 202 LS~EILElLk-KfLrdPvIIrVesee----~~~seVrQvVvqVpe~-------kn~sLt----~----lsKkeaLLqLLe 261 (2355)
|.......+. ..+..++...+.... .....+......+... ....+. . ......+..++.
T Consensus 259 p~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~ 338 (501)
T PHA02558 259 LRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLAL 338 (501)
T ss_pred CCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHH
Confidence 9753322211 112223322221110 0000111111111000 000000 0 011122222221
Q ss_pred c--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCccEEE
Q psy8497 262 Q--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT-DLAARGIDAANVDLVI 338 (2355)
Q Consensus 262 r--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST-SALGEGLDLPaVDTVI 338 (2355)
. ....++|||+..++.++.|++.|...++.+..+||+|+..+|..+++.|+++...||||| +++++|+|+|.+++||
T Consensus 339 ~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vI 418 (501)
T PHA02558 339 KLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVI 418 (501)
T ss_pred HHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEE
Confidence 1 234588999999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred EecCCCCHhHHHHHhhccCCCCCcc
Q psy8497 339 NLEIPHDAATYLHRMGRAGRYGTRG 363 (2355)
Q Consensus 339 IyDSP~SPqSYIQRIGRAGRiGQkG 363 (2355)
++.++.+...|+|++||++|.+...
T Consensus 419 l~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 419 FAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999986443
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=342.49 Aligned_cols=329 Identities=18% Similarity=0.274 Sum_probs=247.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHH-cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVL-NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LL-SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+...+...++.++.+.|+.++...+ ++.|+||++|||+|||++++++|+..+.+ .+.++|||||+++|+.|.++.+
T Consensus 20 v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~---~~~k~vYivPlkALa~Ek~~~~ 96 (766)
T COG1204 20 VLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE---GGGKVVYIVPLKALAEEKYEEF 96 (766)
T ss_pred HHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHh
Confidence 8888888899899998888886655 56999999999999999999999999884 2678999999999999999999
Q ss_pred HHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L 189 (2355)
..+ ..+ +++|..++|+..... .+..++|||+|||++..++......+..+++|||||+|.+.+...+..+..++..+
T Consensus 97 ~~~-~~~-GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~ 174 (766)
T COG1204 97 SRL-EEL-GIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARM 174 (766)
T ss_pred hhH-Hhc-CCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHH
Confidence 944 333 899999999988553 55669999999999988888776677899999999999998876666676666665
Q ss_pred CC---CceEEEEEeccChhHHHHHHHhccCCee---eccCCCccccccceEEEEeccCCC-CCcchhhhHHHHHHHHHhc
Q psy8497 190 PP---MKQMLVVSATYSHDNLATLQKYMVDPLL---IRPEDATRPLLGVKQLVALIPECK-NPSLRYVDEEKKLVQLLSQ 262 (2355)
Q Consensus 190 pp---nrQILLLSATLS~EILElLkKfLrdPvI---IrVesee~~~seVrQvVvqVpe~k-n~sLt~lsKkeaLLqLLer 262 (2355)
.. ..|+++||||+++ ...+..|+..... +++............+...-...+ ............++..+.
T Consensus 175 ~~~~~~~rivgLSATlpN--~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~- 251 (766)
T COG1204 175 RRLNELIRIVGLSATLPN--AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLA- 251 (766)
T ss_pred HhhCcceEEEEEeeecCC--HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHh-
Confidence 43 3799999999984 3445555554322 222222222222222222221121 011111122233333333
Q ss_pred CCCCeEEEEEcccccHHHHHHHHHhc-------------------------------------CCccEEeeCCCCHHHHH
Q psy8497 263 TPFNQCVIFSNYQLRPEVICENLANA-------------------------------------NFGAEYLSGAQDQKARL 305 (2355)
Q Consensus 263 l~kgRVLVFSQTRKmAEiLADyLrEr-------------------------------------GIKVarLHGgMSqEERq 305 (2355)
..+++||||++++.+...+..|... -.+++++|++|+.++|.
T Consensus 252 -~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 252 -EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred -cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 3469999999999999988888830 03578999999999999
Q ss_pred HHHHHHhCCCccEEEEecccccccCCCCccEEE----Eec-----CCCCHhHHHHHhhccCCCC--CccEEEEEE
Q psy8497 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVI----NLE-----IPHDAATYLHRMGRAGRYG--TRGLVITIV 369 (2355)
Q Consensus 306 eILErFRSGEIdVLVSTSALGEGLDLPaVDTVI----IyD-----SP~SPqSYIQRIGRAGRiG--QkGkVIVLV 369 (2355)
.+.+.|+.|.++|||||.+++.|+|+|+-.+|| .|+ .+.++.+++||+|||||.| .-|.++++.
T Consensus 331 ~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 331 LVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 999999999999999999999999999777666 455 3457899999999999988 445666666
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=336.18 Aligned_cols=331 Identities=21% Similarity=0.297 Sum_probs=241.6
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
..++++||.+++..++.+ ++||++|||+|||++++++++..+. ..++++|||+|+++|+.|+.+.+++++.. +..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-~~~ 87 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH---KKGGKVLILAPTKPLVEQHAEFFRKFLNI-PEE 87 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH---hCCCeEEEEeCcHHHHHHHHHHHHHHhCC-CCc
Confidence 348999999999998887 8999999999999999988887764 35678999999999999999999998643 256
Q ss_pred EEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 121 HVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 121 rVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
.+..++|+..... .....+|+|+||+.+...+....+.+..|++|||||||++.....+..+...+.......++++
T Consensus 88 ~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~ 167 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLG 167 (773)
T ss_pred eEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEE
Confidence 7888888764321 1234789999999998877777778889999999999999866555555555555556678999
Q ss_pred EEeccChhHH---HHHHHhccCCeeeccCCCccc-----cccceEEEE--------------------------------
Q psy8497 198 VSATYSHDNL---ATLQKYMVDPLLIRPEDATRP-----LLGVKQLVA-------------------------------- 237 (2355)
Q Consensus 198 LSATLS~EIL---ElLkKfLrdPvIIrVesee~~-----~seVrQvVv-------------------------------- 237 (2355)
|||||..... ..+..+....+.+........ ...+.....
T Consensus 168 lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~ 247 (773)
T PRK13766 168 LTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVS 247 (773)
T ss_pred EEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 9999864321 111111111111100000000 000000000
Q ss_pred -------------------eccC------------------------------------------CC-------------
Q psy8497 238 -------------------LIPE------------------------------------------CK------------- 243 (2355)
Q Consensus 238 -------------------qVpe------------------------------------------~k------------- 243 (2355)
.+.. ..
T Consensus 248 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~ 327 (773)
T PRK13766 248 ISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLV 327 (773)
T ss_pred CCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHH
Confidence 0000 00
Q ss_pred ------------CCcchhhhHHHHHHHHHhc----CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCC--------C
Q psy8497 244 ------------NPSLRYVDEEKKLVQLLSQ----TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGA--------Q 299 (2355)
Q Consensus 244 ------------n~sLt~lsKkeaLLqLLer----l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGg--------M 299 (2355)
........+...|..+|.. ....++||||+++..++.|.++|...++.+..++|. |
T Consensus 328 ~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~ 407 (773)
T PRK13766 328 EDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGM 407 (773)
T ss_pred hCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCC
Confidence 0000001122333444422 456799999999999999999999999999999986 9
Q ss_pred CHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHH
Q psy8497 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377 (2355)
Q Consensus 300 SqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeI 377 (2355)
++.+|..+++.|++|+++|||||+++++|+|+|.+++||+||+|+++..++||+||+||.+. +.+++++...+.++.
T Consensus 408 ~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ee~ 484 (773)
T PRK13766 408 SQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTRDEA 484 (773)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999754 888888887776553
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=353.56 Aligned_cols=301 Identities=20% Similarity=0.293 Sum_probs=214.9
Q ss_pred EEccCCchHHHHHHHHHHHHHHhcC---------CCCCeEEEEcccHHHHHHHHHHHHHHh-----------cccCCcEE
Q psy8497 63 VQSKSGTGKSIVFVVAALNKLIKLP---------VQQPQTIILAPTREIAVQITDVVRSVG-----------AHVKNLHV 122 (2355)
Q Consensus 63 LAAPTGSGKTLVALIAILerL~ekr---------~qggRVLILVPTRALAqQ~anwLREFg-----------k~APgLrV 122 (2355)
|++|||+|||++|+++++..+.... ..+.++|||+|+++|+.|+.+.++... ....+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999998887432 235789999999999999998887522 12347899
Q ss_pred EEEECCccccC----CCCCCcEEEECHHHHHHHHHhh-cccCcCceEEEecccchhcccChHH----HHHHHHHhCCCCc
Q psy8497 123 DYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLK-YLNMDSVRLFIMDEADKLINTGFVE----DITWIYSQLPPMK 193 (2355)
Q Consensus 123 VvytGGkq~rk----qirq~DILVTTPErLLDLLdrr-~LdLSkIdLLIVDEAHRLkN~GF~S----rLeeILs~Lppnr 193 (2355)
.+++|+..... ....++|||||||+|..++..+ ...+..+++|||||+|.|.+..++. .+..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999976543 2245899999999998877543 2357899999999999998754433 3444445556678
Q ss_pred eEEEEEeccChhHHHHHHHhccC--CeeeccCCCccccccceEEEEeccCCCCCc--------------chh--hhHHHH
Q psy8497 194 QMLVVSATYSHDNLATLQKYMVD--PLLIRPEDATRPLLGVKQLVALIPECKNPS--------------LRY--VDEEKK 255 (2355)
Q Consensus 194 QILLLSATLS~EILElLkKfLrd--PvIIrVesee~~~seVrQvVvqVpe~kn~s--------------Lt~--lsKkea 255 (2355)
|+|++|||+.+. ..+..|+.. +..+.... ......+. +...+....... ... ......
T Consensus 161 QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~-~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRSA--SDVAAFLGGDRPVTVVNPP-AMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCCH--HHHHHHhcCCCCEEEECCC-CCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 999999999863 344455542 33332211 11112222 111111110000 000 001112
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC---------------------------------CccEEeeCCCCHH
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN---------------------------------FGAEYLSGAQDQK 302 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG---------------------------------IKVarLHGgMSqE 302 (2355)
++..+. ...++||||++++.++.++..|.+.. +.+..+||+|+.+
T Consensus 237 il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 237 ILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 222222 24689999999999999999997641 1256899999999
Q ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC-CCccEEEEEE
Q psy8497 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY-GTRGLVITIV 369 (2355)
Q Consensus 303 ERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi-GQkGkVIVLV 369 (2355)
+|..+++.|++|.+++||||+++++|||++.+++||++++|.+..+|+||+|||||. |..+.++++.
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999995 3334445333
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-31 Score=334.77 Aligned_cols=367 Identities=16% Similarity=0.149 Sum_probs=244.4
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
.|.|||..++..++.. ..+||+++||+|||+.+.+.+...+.. ....++|||||. .|+.||...+.+.+ ++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~--g~~~rvLIVvP~-sL~~QW~~El~~kF----~l 224 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT--GRAERVLILVPE-TLQHQWLVEMLRRF----NL 224 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc--CCCCcEEEEcCH-HHHHHHHHHHHHHh----CC
Confidence 6899999999887754 369999999999998887555544442 445789999998 68888887776543 34
Q ss_pred EEEEEECCcccc------CCCCCCcEEEECHHHHHHHH-HhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhC-CC
Q psy8497 121 HVDYFIGGTQVE------RPKRPVQIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQL-PP 191 (2355)
Q Consensus 121 rVVvytGGkq~r------kqirq~DILVTTPErLLDLL-drr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~L-pp 191 (2355)
.+.++.+..... ......+++|+|++.+...- ....+.-..|++|||||||++.... ..+.....+..+ ..
T Consensus 225 ~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~ 304 (956)
T PRK04914 225 RFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV 304 (956)
T ss_pred CeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc
Confidence 445554432111 11223689999999886421 1123334579999999999997321 001112222222 23
Q ss_pred CceEEEEEeccChhHHHHHHHhc--cCCee--------------------------------------------------
Q psy8497 192 MKQMLVVSATYSHDNLATLQKYM--VDPLL-------------------------------------------------- 219 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKfL--rdPvI-------------------------------------------------- 219 (2355)
...+|+|||||.......+...+ .+|..
T Consensus 305 ~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l 384 (956)
T PRK04914 305 IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPL 384 (956)
T ss_pred cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHH
Confidence 45789999998742221111000 00000
Q ss_pred --------------------------------eccCCCc---cccccceEEEEeccCCCC--------------------
Q psy8497 220 --------------------------------IRPEDAT---RPLLGVKQLVALIPECKN-------------------- 244 (2355)
Q Consensus 220 --------------------------------IrVesee---~~~seVrQvVvqVpe~kn-------------------- 244 (2355)
++..... .+...+..+...++....
T Consensus 385 ~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~ 464 (956)
T PRK04914 385 LQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQI 464 (956)
T ss_pred HhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHH
Confidence 0000000 000000000000000000
Q ss_pred --------CcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHH-HhcCCccEEeeCCCCHHHHHHHHHHHhCC-
Q psy8497 245 --------PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENL-ANANFGAEYLSGAQDQKARLASLDSFKRG- 314 (2355)
Q Consensus 245 --------~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyL-rErGIKVarLHGgMSqEERqeILErFRSG- 314 (2355)
.......+...|..++......++||||+++.++..|++.| ...|+.+..+||+|+..+|.++++.|+++
T Consensus 465 ~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~ 544 (956)
T PRK04914 465 YQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEE 544 (956)
T ss_pred HHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCC
Confidence 00011123456777777776789999999999999999999 46799999999999999999999999974
Q ss_pred -CccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccC
Q psy8497 315 -KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVG 393 (2355)
Q Consensus 315 -EIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~e 393 (2355)
.+.|||||.++++|+|++.+++||+||+||||..|+|||||++|+|+.+.|.+++........+.+.+.+...+.+...
T Consensus 545 ~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~ 624 (956)
T PRK04914 545 DGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEH 624 (956)
T ss_pred CCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceec
Confidence 6999999999999999999999999999999999999999999999999988888776666777777777777776676
Q ss_pred CCccchhhhhhhHHHHHHHHHhCC
Q psy8497 394 LVPDNLTGDQINWTQRVQTLLAKP 417 (2355)
Q Consensus 394 IVPkgLlKeqiDw~~~LERILKnP 417 (2355)
.++..-.- ...+...+...+..+
T Consensus 625 ~~~~~~~v-~~~~~~~l~~~l~~~ 647 (956)
T PRK04914 625 TCPTGRAL-YDEFGDELIPYLASP 647 (956)
T ss_pred cCCCHHHH-HHHHHHHHHHHHhCC
Confidence 76654222 223344555555444
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=298.31 Aligned_cols=296 Identities=18% Similarity=0.160 Sum_probs=201.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc-------
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE------- 132 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r------- 132 (2355)
++||.+|||+|||++++++++..+.. ....++|||+|+++|+.|+.+.+..++.. .++.+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~--~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS--QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh--CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCC
Confidence 47999999999999999999987653 34678999999999999999999997532 233333332100
Q ss_pred ------------C---CCCCCcEEEECHHHHHHHHHhhc------ccCcCceEEEecccchhcccChHHHHHHHHHhCC-
Q psy8497 133 ------------R---PKRPVQIVVGSPGRIKQMIKLKY------LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP- 190 (2355)
Q Consensus 133 ------------k---qirq~DILVTTPErLLDLLdrr~------LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp- 190 (2355)
. .....+|+|+||+++...+.... +......+|||||+|.+....+.. +..++..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~ 153 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKD 153 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHH
Confidence 0 01126799999999877665411 111223689999999988754333 555555443
Q ss_pred CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhc-CCCCeEE
Q psy8497 191 PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQ-TPFNQCV 269 (2355)
Q Consensus 191 pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLer-l~kgRVL 269 (2355)
...|+|+||||++......+..+............... ....+.+..+... . ..+...+..++.. ....++|
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~---~~~~~~l~~l~~~~~~~~~~l 226 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESD---K---VGEISSLERLLEFIKKGGKIA 226 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccc---c---ccCHHHHHHHHHHhhCCCeEE
Confidence 46899999999986554544443322111111100000 0001111111111 0 0112223333322 2346999
Q ss_pred EEEcccccHHHHHHHHHhcCC--ccEEeeCCCCHHHHHH----HHHHHhCCCccEEEEecccccccCCCCccEEEEecCC
Q psy8497 270 IFSNYQLRPEVICENLANANF--GAEYLSGAQDQKARLA----SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP 343 (2355)
Q Consensus 270 VFSQTRKmAEiLADyLrErGI--KVarLHGgMSqEERqe----ILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP 343 (2355)
|||++++.++.++..|.+.+. .+..+||+|+..+|.. +++.|+++...|||||+++++|||++ +++||++..|
T Consensus 227 Vf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~ 305 (358)
T TIGR01587 227 IIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP 305 (358)
T ss_pred EEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC
Confidence 999999999999999988776 4899999999999976 48899999999999999999999996 8888888766
Q ss_pred CCHhHHHHHhhccCCCCCc----cEEEEEEccc
Q psy8497 344 HDAATYLHRMGRAGRYGTR----GLVITIVSAE 372 (2355)
Q Consensus 344 ~SPqSYIQRIGRAGRiGQk----GkVIVLVSsd 372 (2355)
+.+|+||+||+||.|+. +.+++|....
T Consensus 306 --~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 306 --IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred --HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 88999999999998853 3667666543
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-31 Score=311.89 Aligned_cols=332 Identities=19% Similarity=0.268 Sum_probs=257.6
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPY-VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~-LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
...+.+.+++ +.+.|...|+.+|.|+|.-++.. |+.|.|.+|+.+|++|||++.-++-+..+. ..++++|||||+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPL 270 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPL 270 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehh
Confidence 4567777777 99999999999999999999976 678999999999999999999999888877 468899999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
.+|++|.++.|++-...+ ++.+.+-+|-.-.... ...++|||+|||-+..++... ..+.+++.|||||+|
T Consensus 271 VALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiH 348 (830)
T COG1202 271 VALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIH 348 (830)
T ss_pred HHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeee
Confidence 999999999999876666 7777777776443322 123899999999998888765 568999999999999
Q ss_pred hhcccChHHHH---HHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcch
Q psy8497 172 KLINTGFVEDI---TWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR 248 (2355)
Q Consensus 172 RLkN~GF~SrL---eeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt 248 (2355)
.|.+...+.++ ..-+..+.+..|+|+||||..+.. +....+-...+.+ .. .+.++...+.+.....
T Consensus 349 tL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~a~lV~y--~~---RPVplErHlvf~~~e~----- 417 (830)
T COG1202 349 TLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLGAKLVLY--DE---RPVPLERHLVFARNES----- 417 (830)
T ss_pred eccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhCCeeEee--cC---CCCChhHeeeeecCch-----
Confidence 99876544444 444455567899999999998543 3333322222222 21 1223333444443221
Q ss_pred hhhHHHHHHHHH--------hcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEE
Q psy8497 249 YVDEEKKLVQLL--------SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320 (2355)
Q Consensus 249 ~lsKkeaLLqLL--------erl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLV 320 (2355)
.+...+..+. ...-.+++|||+.+++.|..|+++|..+|+++..+|++|+..+|..+...|.++++.++|
T Consensus 418 --eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VV 495 (830)
T COG1202 418 --EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVV 495 (830)
T ss_pred --HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEe
Confidence 1222222222 222346999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCccEEE---EecCCC-CHhHHHHHhhccCCCC--CccEEEEEEcc
Q psy8497 321 TTDLAARGIDAANVDLVI---NLEIPH-DAATYLHRMGRAGRYG--TRGLVITIVSA 371 (2355)
Q Consensus 321 STSALGEGLDLPaVDTVI---IyDSP~-SPqSYIQRIGRAGRiG--QkGkVIVLVSs 371 (2355)
+|.+++.|+|+|+-.+|+ -+...| ++++|.||+|||||.+ ..|+|++++.+
T Consensus 496 TTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 496 TTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred ehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 999999999999776554 455666 9999999999999977 66888888843
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-32 Score=329.89 Aligned_cols=327 Identities=18% Similarity=0.263 Sum_probs=234.3
Q ss_pred CCCCCCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 39 NGFVKESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
-|+ +|.+||.-+++||. .+-++||+++||+||| |+++++|.+|.+... .++-|||||.++| -+|+++|.
T Consensus 396 s~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKT-iQvIaFlayLkq~g~-~gpHLVVvPsSTl----eNWlrEf~ 468 (941)
T KOG0389|consen 396 SGI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKT-IQVIAFLAYLKQIGN-PGPHLVVVPSSTL----ENWLREFA 468 (941)
T ss_pred CCC-cccchhhhhHHHHHHHHHccccceehhhccCcch-hHHHHHHHHHHHcCC-CCCcEEEecchhH----HHHHHHHH
Confidence 344 69999999999986 4567999999999999 778899999986544 6678999999999 99999999
Q ss_pred cccCCcEEEEEECCccccCCC--------CCCcEEEECHHHHHHH-HHhhcccCcCceEEEecccchhcccCh--HHHHH
Q psy8497 115 AHVKNLHVDYFIGGTQVERPK--------RPVQIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINTGF--VEDIT 183 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~rkqi--------rq~DILVTTPErLLDL-Ldrr~LdLSkIdLLIVDEAHRLkN~GF--~SrLe 183 (2355)
.|+|.++|..|+|....+..+ ..++||||||..+..- -++.++....|+++|+||+|.|++..- +..+.
T Consensus 469 kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM 548 (941)
T KOG0389|consen 469 KWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM 548 (941)
T ss_pred HhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhc
Confidence 999999999999997655332 2499999999876422 223455667888999999999998762 22222
Q ss_pred HHHHhCCCCceEEEEEeccChhHHHHHHHhcc---------------------------------------------CCe
Q psy8497 184 WIYSQLPPMKQMLVVSATYSHDNLATLQKYMV---------------------------------------------DPL 218 (2355)
Q Consensus 184 eILs~LppnrQILLLSATLS~EILElLkKfLr---------------------------------------------dPv 218 (2355)
. ++ ..+.|+||+||-++.+..+..+|. .|+
T Consensus 549 ~----I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PF 623 (941)
T KOG0389|consen 549 S----IN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPF 623 (941)
T ss_pred c----cc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHH
Confidence 2 22 456688999988765543332210 011
Q ss_pred eeccCCCc--cccccceEEEEeccCC----------------------CC---Cc---c---------------------
Q psy8497 219 LIRPEDAT--RPLLGVKQLVALIPEC----------------------KN---PS---L--------------------- 247 (2355)
Q Consensus 219 IIrVesee--~~~seVrQvVvqVpe~----------------------kn---~s---L--------------------- 247 (2355)
+++..... ...+...+.+..+... .+ .. +
T Consensus 624 ILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~ 703 (941)
T KOG0389|consen 624 ILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEK 703 (941)
T ss_pred HHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHH
Confidence 11000000 0000111111111000 00 00 0
Q ss_pred ------------------------------------------------------hhhhHHHHHHHHHhcC--CCCeEEEE
Q psy8497 248 ------------------------------------------------------RYVDEEKKLVQLLSQT--PFNQCVIF 271 (2355)
Q Consensus 248 ------------------------------------------------------t~lsKkeaLLqLLerl--~kgRVLVF 271 (2355)
....+...|..+|... .++|||||
T Consensus 704 L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiF 783 (941)
T KOG0389|consen 704 LRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIF 783 (941)
T ss_pred HHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEe
Confidence 0001123333333222 23799999
Q ss_pred EcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC--CccEEEEecccccccCCCCccEEEEecCCCCHhHH
Q psy8497 272 SNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG--KVRILVTTDLAARGIDAANVDLVINLEIPHDAATY 349 (2355)
Q Consensus 272 SQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG--EIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSY 349 (2355)
++...++++|.-+|.-+++++.+|+|.+...+|+.+|+.|+.. -+-+|++|.++|.||||..+++||++|.++||..+
T Consensus 784 SQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD 863 (941)
T KOG0389|consen 784 SQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDD 863 (941)
T ss_pred eHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCccc
Confidence 9999999999999999999999999999999999999999964 34569999999999999999999999999999999
Q ss_pred HHHhhccCCCCCc--cEEEEEEcccCHHHH
Q psy8497 350 LHRMGRAGRYGTR--GLVITIVSAESLVKF 377 (2355)
Q Consensus 350 IQRIGRAGRiGQk--GkVIVLVSsdDVEeI 377 (2355)
.|+--||||.||. ..|+.|++..++++-
T Consensus 864 ~QAEDRcHRvGQtkpVtV~rLItk~TIEE~ 893 (941)
T KOG0389|consen 864 KQAEDRCHRVGQTKPVTVYRLITKSTIEEG 893 (941)
T ss_pred chhHHHHHhhCCcceeEEEEEEecCcHHHH
Confidence 9999999999965 556666677666653
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=316.02 Aligned_cols=336 Identities=20% Similarity=0.287 Sum_probs=230.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
....+..-.+ .||+||.+.+..++ ++|+||++|||+|||+++...++.++.+ .+.+++|+++|++.|+.|+...+.
T Consensus 52 ~~~~~~p~~~-~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw--~p~~KiVF~aP~~pLv~QQ~a~~~ 127 (746)
T KOG0354|consen 52 AQRWIYPTNL-ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW--RPKGKVVFLAPTRPLVNQQIACFS 127 (746)
T ss_pred hccccccCcc-cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc--CCcceEEEeeCCchHHHHHHHHHh
Confidence 4444333333 89999999999999 9999999999999999999999999986 345899999999999999987777
Q ss_pred HHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhccc-CcCceEEEecccchhcccChHHHHHHHH
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLN-MDSVRLFIMDEADKLINTGFVEDITWIY 186 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~Ld-LSkIdLLIVDEAHRLkN~GF~SrLeeIL 186 (2355)
.++.. ..+....|+..... .....+|+|+||+.|.+.+...... +..|.+|||||||+.....-+..+..-+
T Consensus 128 ~~~~~---~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 128 IYLIP---YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred hccCc---ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHH
Confidence 76644 34444455533222 2234899999999999888775443 4889999999999988766666666444
Q ss_pred HhCCCCc-eEEEEEeccChhHHHHHH---HhccCCeeec-------------------cC--------------------
Q psy8497 187 SQLPPMK-QMLVVSATYSHDNLATLQ---KYMVDPLLIR-------------------PE-------------------- 223 (2355)
Q Consensus 187 s~Lppnr-QILLLSATLS~EILElLk---KfLrdPvIIr-------------------Ve-------------------- 223 (2355)
-.++... |||+|||||+........ .+... +.++ +.
T Consensus 205 l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 205 LDLKNQGNQILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred HHhhhccccEEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 4444444 999999999965433221 11100 0000 00
Q ss_pred ------------CCc--cc--cccce------------------------------EEEEecc----------CCCCCc-
Q psy8497 224 ------------DAT--RP--LLGVK------------------------------QLVALIP----------ECKNPS- 246 (2355)
Q Consensus 224 ------------see--~~--~seVr------------------------------QvVvqVp----------e~kn~s- 246 (2355)
... .. ....+ ..+..++ ......
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 000 00 00000 0000000 000000
Q ss_pred ---------chh------------------hhHHHHHHHH----HhcCCCCeEEEEEcccccHHHHHHHHHh---cCCcc
Q psy8497 247 ---------LRY------------------VDEEKKLVQL----LSQTPFNQCVIFSNYQLRPEVICENLAN---ANFGA 292 (2355)
Q Consensus 247 ---------Lt~------------------lsKkeaLLqL----Lerl~kgRVLVFSQTRKmAEiLADyLrE---rGIKV 292 (2355)
... -.+...|.++ ....+..|+|||+.++..++.|..+|.. .+++.
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 000 0111222222 2233446999999999999999999983 24444
Q ss_pred EEeeC--------CCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE
Q psy8497 293 EYLSG--------AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364 (2355)
Q Consensus 293 arLHG--------gMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk 364 (2355)
..+-| +|++.++.++|+.|++|+++|||||+++++|||+++|++||.||.-.||...+||+|| ||. +.++
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~ 521 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSK 521 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCe
Confidence 44443 8999999999999999999999999999999999999999999999999999999999 994 6677
Q ss_pred EEEEEcccCHHHH
Q psy8497 365 VITIVSAESLVKF 377 (2355)
Q Consensus 365 VIVLVSsdDVEeI 377 (2355)
+++++........
T Consensus 522 ~vll~t~~~~~~~ 534 (746)
T KOG0354|consen 522 CVLLTTGSEVIEF 534 (746)
T ss_pred EEEEEcchhHHHH
Confidence 7777764444333
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=316.50 Aligned_cols=314 Identities=14% Similarity=0.202 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCchHHHHH---------HHHHHHHHHh--cCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVF---------VVAALNKLIK--LPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 46 PYQeEALn~LLSGRNVILAAPTGSGKTLVA---------LIAILerL~e--kr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
.+|.++++.+++++++|+.|+||+|||.+. +++.+..+.. ......++||++|+++|+.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999762 2223333321 12245689999999999999999988765
Q ss_pred cc--cCCcEEEEEECCcccc---CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC
Q psy8497 115 AH--VKNLHVDYFIGGTQVE---RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189 (2355)
Q Consensus 115 k~--APgLrVVvytGGkq~r---kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L 189 (2355)
.. ..++.+.+.+|+.... ...+..+|||+|+... ...+..+++|||||||.+...+ ..+..++..+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~ 317 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKH 317 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHHHHh
Confidence 44 3466778888887532 2223478999996521 1236788999999999987655 4445555444
Q ss_pred C-CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchh-hhHHHHHHHHHhc---CC
Q psy8497 190 P-PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY-VDEEKKLVQLLSQ---TP 264 (2355)
Q Consensus 190 p-pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~-lsKkeaLLqLLer---l~ 264 (2355)
. ...|+|+||||++.+... +..++.++..+.+... ....+.+.+............+ ......++.++.. ..
T Consensus 318 ~~~~rq~ILmSATl~~dv~~-l~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~ 394 (675)
T PHA02653 318 IDKIRSLFLMTATLEDDRDR-IKEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPK 394 (675)
T ss_pred hhhcCEEEEEccCCcHhHHH-HHHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhccc
Confidence 3 335999999999876654 4677877777766532 2234454443222110000011 1112223333322 23
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHH-hCCCccEEEEecccccccCCCCccEEEEec
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSF-KRGKVRILVTTDLAARGIDAANVDLVINLE 341 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErF-RSGEIdVLVSTSALGEGLDLPaVDTVIIyD 341 (2355)
.+.+|||++++..++.+++.|... ++.+..|||+|++. .++++.| ++|+.+|||||+++++|||+|+|++||.++
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G 472 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTG 472 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECC
Confidence 468999999999999999999987 68999999999975 4666777 689999999999999999999999999997
Q ss_pred ---CCC---------CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 342 ---IPH---------DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 342 ---SP~---------SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.|. |..+++||+|||||. ++|.++.|++..+.
T Consensus 473 ~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 473 RVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred CccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 443 788999999999998 89999999987654
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=318.59 Aligned_cols=311 Identities=19% Similarity=0.219 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEE
Q psy8497 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYF 125 (2355)
Q Consensus 46 PYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvy 125 (2355)
.+-.+.+..|..+.++||+++||+|||.++.++++.... ..+++||+.|+++++.|+.+.+.+......+..|.+.
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 344566777777889999999999999999999887653 3568999999999999999998655444335666665
Q ss_pred ECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc-hhcccChHH-HHHHHHHhCCCCceEEEEEeccC
Q psy8497 126 IGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD-KLINTGFVE-DITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 126 tGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH-RLkN~GF~S-rLeeILs~LppnrQILLLSATLS 203 (2355)
++.... .....+|+|+|++.|+.++... ..+..+++|||||+| ++++..+.- .+..+...++...|+|+||||+.
T Consensus 81 vr~~~~--~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 81 VRGENK--VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred Eccccc--cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 554332 2234789999999999888764 468899999999999 567665533 33455566778899999999998
Q ss_pred hhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHH
Q psy8497 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICE 283 (2355)
Q Consensus 204 ~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLAD 283 (2355)
... +..++.++.++...... ..+...+...... .. ........+..++.. ..+.+|||++++..++.++.
T Consensus 158 ~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~--~~-~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~ 227 (819)
T TIGR01970 158 GER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGD--QR-LEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQE 227 (819)
T ss_pred HHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchh--hh-HHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHH
Confidence 654 35566554444443322 1233333222111 00 001112334444443 34689999999999999999
Q ss_pred HHHh---cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC----------------
Q psy8497 284 NLAN---ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH---------------- 344 (2355)
Q Consensus 284 yLrE---rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~---------------- 344 (2355)
.|.. .++.+..|||+|+..+|..+++.|.+|..+|||||++++.|||||+|++||.++.+.
T Consensus 228 ~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 307 (819)
T TIGR01970 228 QLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETV 307 (819)
T ss_pred HHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEE
Confidence 9987 378899999999999999999999999999999999999999999999999998874
Q ss_pred --CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 345 --DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 345 --SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|..+++||+|||||. .+|.||.+++..+.
T Consensus 308 ~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 308 RISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred EECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 345689999999997 89999999976543
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=317.57 Aligned_cols=330 Identities=17% Similarity=0.172 Sum_probs=238.2
Q ss_pred CCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
.|++||+++++||.. +...||.++||+||| ++++++|..|.+...--+++|||||...+ .+|+.+|..|.|
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKT-IQiisFLaaL~~S~k~~~paLIVCP~Tii----~qW~~E~~~w~p 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKT-IQIISFLAALHHSGKLTKPALIVCPATII----HQWMKEFQTWWP 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccc-hhHHHHHHHHhhcccccCceEEEccHHHH----HHHHHHHHHhCc
Confidence 689999999999974 567999999999999 55668888887652334789999998766 677778888889
Q ss_pred CcEEEEEECCcccc-----------------CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHH
Q psy8497 119 NLHVDYFIGGTQVE-----------------RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVED 181 (2355)
Q Consensus 119 gLrVVvytGGkq~r-----------------kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~Sr 181 (2355)
.++|.++++..... ......+|+||||+.+ .+....+....|+++|+||+|++.|.. ..
T Consensus 280 ~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~--r~~~d~l~~~~W~y~ILDEGH~IrNpn--s~ 355 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGF--RIQGDDLLGILWDYVILDEGHRIRNPN--SK 355 (923)
T ss_pred ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhh--cccCcccccccccEEEecCcccccCCc--cH
Confidence 99999999876621 1112267999999988 344445567789999999999999987 77
Q ss_pred HHHHHHhCCCCceEEEEEeccChhHHHHHHHhcc--CC------------e--eeccCCC--------------------
Q psy8497 182 ITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV--DP------------L--LIRPEDA-------------------- 225 (2355)
Q Consensus 182 LeeILs~LppnrQILLLSATLS~EILElLkKfLr--dP------------v--IIrVese-------------------- 225 (2355)
+...+..++ ..+.|+||+||.++.+..++.++. .| + .|.....
T Consensus 356 islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~ 434 (923)
T KOG0387|consen 356 ISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRD 434 (923)
T ss_pred HHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHH
Confidence 777777775 455677899988877766653321 00 0 0000000
Q ss_pred ---------------ccccccceEEEEeccCCCC----------------------------------------------
Q psy8497 226 ---------------TRPLLGVKQLVALIPECKN---------------------------------------------- 244 (2355)
Q Consensus 226 ---------------e~~~seVrQvVvqVpe~kn---------------------------------------------- 244 (2355)
..........+.++.-...
T Consensus 435 lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~ 514 (923)
T KOG0387|consen 435 LISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDE 514 (923)
T ss_pred HhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccc
Confidence 0000111111111111000
Q ss_pred ---------CcchhhhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHH-hcCCccEEeeCCCCHHHHHHHHHHHh
Q psy8497 245 ---------PSLRYVDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLA-NANFGAEYLSGAQDQKARLASLDSFK 312 (2355)
Q Consensus 245 ---------~sLt~lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLr-ErGIKVarLHGgMSqEERqeILErFR 312 (2355)
.......++..+..+|..- .+++||+|++++.|+++|..+|. ..++.+.+++|.++...|+.++++|+
T Consensus 515 ~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fn 594 (923)
T KOG0387|consen 515 DEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFN 594 (923)
T ss_pred ccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhc
Confidence 0011123344444444322 34699999999999999999999 68999999999999999999999999
Q ss_pred CCCc-c-EEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEE--cccCHHHHHHHHH
Q psy8497 313 RGKV-R-ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV--SAESLVKFHSLMG 382 (2355)
Q Consensus 313 SGEI-d-VLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLV--SsdDVEeIEsLrR 382 (2355)
++.. . ||++|++++.||||..|+-|||||++|||..+.|+.-||-|+||+..|++|. +..+.++....++
T Consensus 595 e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQ 668 (923)
T KOG0387|consen 595 EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQ 668 (923)
T ss_pred CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHH
Confidence 7653 3 6889999999999999999999999999999999999999999876655554 5555555444433
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=317.83 Aligned_cols=340 Identities=20% Similarity=0.238 Sum_probs=252.1
Q ss_pred HHCCCCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhc------CCCCCeEEEEcccHHHHHHHHHH
Q psy8497 37 QENGFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKL------PVQQPQTIILAPTREIAVQITDV 109 (2355)
Q Consensus 37 qa~GF~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ek------r~qggRVLILVPTRALAqQ~anw 109 (2355)
.-++|.+|+.+|.++++.++. +.|+|||||||+|||.+|+++||..+.+. .....+++||+|+++||.++.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 347888999999999999996 57899999999999999999999988741 23567899999999999888876
Q ss_pred HHHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhh---cccCcCceEEEecccchhcccChHHHHHHH
Q psy8497 110 VRSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLK---YLNMDSVRLFIMDEADKLINTGFVEDITWI 185 (2355)
Q Consensus 110 LREFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr---~LdLSkIdLLIVDEAHRLkN~GF~SrLeeI 185 (2355)
+.+-+.++ ++.|..++|+.+... .+..++|||||||.+.-.-++. .-.+..+.+|||||+|.|.+. .+..++.|
T Consensus 184 ~~kkl~~~-gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 184 FSKKLAPL-GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred Hhhhcccc-cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 66655666 899999999987653 3556999999999874333221 112577889999999977654 44555555
Q ss_pred HHh-------CCCCceEEEEEeccChhHHHHHHHhccCC--eeeccCCCccccccceEEEEeccCCCCC---cchhhhHH
Q psy8497 186 YSQ-------LPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNP---SLRYVDEE 253 (2355)
Q Consensus 186 Ls~-------LppnrQILLLSATLS~EILElLkKfLrdP--vIIrVesee~~~seVrQvVvqVpe~kn~---sLt~lsKk 253 (2355)
+.. .....++|+||||+++ ...+..||..+ .-+........+..+.+.+.-++..+.. ........
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN--~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN--YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC--HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 544 3467899999999984 33444455432 2233333334444455544444333111 11222233
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-----------------------CccEEeeCCCCHHHHHHHHHH
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN-----------------------FGAEYLSGAQDQKARLASLDS 310 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG-----------------------IKVarLHGgMSqEERqeILEr 310 (2355)
..+.+.+.. +++|||||.++......+..|.+.. ....++|.+|...+|..+.+.
T Consensus 340 ~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 340 DKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 555555554 3799999999999999888887631 356789999999999999999
Q ss_pred HhCCCccEEEEecccccccCCCCccEEE----EecCCC------CHhHHHHHhhccCCCC--CccEEEEEEcccCHHHHH
Q psy8497 311 FKRGKVRILVTTDLAARGIDAANVDLVI----NLEIPH------DAATYLHRMGRAGRYG--TRGLVITIVSAESLVKFH 378 (2355)
Q Consensus 311 FRSGEIdVLVSTSALGEGLDLPaVDTVI----IyDSP~------SPqSYIQRIGRAGRiG--QkGkVIVLVSsdDVEeIE 378 (2355)
|..|.++||+||.++++|+|||+--+|| +||+-. ..-..+|..|||||.. ..|.+|++.+.+....+.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 9999999999999999999999766666 344332 5678899999999965 678999999988888887
Q ss_pred HHHH
Q psy8497 379 SLMG 382 (2355)
Q Consensus 379 sLrR 382 (2355)
.++.
T Consensus 498 sLl~ 501 (1230)
T KOG0952|consen 498 SLLT 501 (1230)
T ss_pred HHHc
Confidence 7754
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=327.59 Aligned_cols=301 Identities=20% Similarity=0.236 Sum_probs=228.7
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+.+.+.. .|+ .|+++|..+++.++.++++++++|||+|||. ++++++..+. ..+.++|||+||++|+.|+.+.+
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA---KKGKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHH
Confidence 4555544 477 8999999999999999999999999999995 4444444443 24788999999999999999999
Q ss_pred HHHhcccCCcEEEEEECCccc-----cC-----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-----
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQV-----ER-----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN----- 175 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~-----rk-----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN----- 175 (2355)
++++... ++.+.++.|+... .. ....++|+|+||++|.+.+. .+....+++|||||||+++.
T Consensus 144 ~~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 144 EKFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccch
Confidence 9998766 6677666665421 10 12348999999999988775 45566799999999999885
Q ss_pred ------cChH-HHHHHHHHhCCC------------------------CceEEEEEeccChhHHHHHHHhccCCeeeccCC
Q psy8497 176 ------TGFV-EDITWIYSQLPP------------------------MKQMLVVSATYSHDNLATLQKYMVDPLLIRPED 224 (2355)
Q Consensus 176 ------~GF~-SrLeeILs~Lpp------------------------nrQILLLSATLS~EILElLkKfLrdPvIIrVes 224 (2355)
.+|. ..+..++..++. ..|++++|||+++..... .++.....+.+..
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~~ll~~~v~~ 298 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--KLFRELLGFEVGS 298 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--HHhhccceEEecC
Confidence 4563 566666666553 679999999998642221 1222333344443
Q ss_pred CccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEccccc---HHHHHHHHHhcCCccEEeeCCCCH
Q psy8497 225 ATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLR---PEVICENLANANFGAEYLSGAQDQ 301 (2355)
Q Consensus 225 ee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKm---AEiLADyLrErGIKVarLHGgMSq 301 (2355)
.......+.+.+.... .+...|..++.... .++||||++... ++.|+++|...|+++..+||+|
T Consensus 299 ~~~~~rnI~~~yi~~~----------~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-- 365 (1176)
T PRK09401 299 PVFYLRNIVDSYIVDE----------DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-- 365 (1176)
T ss_pred cccccCCceEEEEEcc----------cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH--
Confidence 3334445555555433 23445666665543 589999999888 9999999999999999999999
Q ss_pred HHHHHHHHHHhCCCccEEEE----ecccccccCCCC-ccEEEEecCCC------CHhHHHHHhhccCC
Q psy8497 302 KARLASLDSFKRGKVRILVT----TDLAARGIDAAN-VDLVINLEIPH------DAATYLHRMGRAGR 358 (2355)
Q Consensus 302 EERqeILErFRSGEIdVLVS----TSALGEGLDLPa-VDTVIIyDSP~------SPqSYIQRIGRAGR 358 (2355)
...++.|++|+++|||| |+++++|||+|. +++||+|+.|. ....+.+++||+..
T Consensus 366 ---~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 ---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred ---HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 689999999999 89999999998 66789999999975
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=335.37 Aligned_cols=315 Identities=17% Similarity=0.196 Sum_probs=234.1
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+.+.+.. +|| .|+++|.++++.+++++++++.+|||+|||++++++++.... .+.++|||+||++|+.|+.+.+
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~----~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL----KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh----cCCeEEEEECHHHHHHHHHHHH
Confidence 6777776 899 799999999999999999999999999999865555443322 4678999999999999999999
Q ss_pred HHHhcccC-CcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc------
Q psy8497 111 RSVGAHVK-NLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN------ 175 (2355)
Q Consensus 111 REFgk~AP-gLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN------ 175 (2355)
+.++.... ++.+..++|+...... ...++|||+||+.|.+.+... . ...+++|||||||+|+.
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccc
Confidence 99876542 4677788888654321 124899999999887766532 2 26789999999999976
Q ss_pred -----cChHHHHHH----HHH----------------------hCCCCce-EEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 176 -----TGFVEDITW----IYS----------------------QLPPMKQ-MLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 176 -----~GF~SrLee----ILs----------------------~LppnrQ-ILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
.+|...+.. ++. .++...| ++++|||++... ....++..+..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeEEEec
Confidence 356555543 321 2344455 567999998531 122334555555555
Q ss_pred CCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEccccc---HHHHHHHHHhcCCccEEeeCCCC
Q psy8497 224 DATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLR---PEVICENLANANFGAEYLSGAQD 300 (2355)
Q Consensus 224 see~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKm---AEiLADyLrErGIKVarLHGgMS 300 (2355)
........+.+.+...... ....|+.++... ...+||||++++. ++.|+.+|...|+++..+||+
T Consensus 299 ~~~~~lr~i~~~yi~~~~~---------~k~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKI---------IKEHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CCCCCCCCcEEEEEECCHH---------HHHHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 5444445555555443221 123566666555 3589999999886 489999999999999999984
Q ss_pred HHHHHHHHHHHhCCCccEEEEe----cccccccCCCC-ccEEEEecCCC---CHhHHHHH-------------hhccCCC
Q psy8497 301 QKARLASLDSFKRGKVRILVTT----DLAARGIDAAN-VDLVINLEIPH---DAATYLHR-------------MGRAGRY 359 (2355)
Q Consensus 301 qEERqeILErFRSGEIdVLVST----SALGEGLDLPa-VDTVIIyDSP~---SPqSYIQR-------------IGRAGRi 359 (2355)
|..+++.|++|+++||||| +++++|||+|. |+.||+++.|. +...|.|. +|||+|.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8899999999999999999 48999999999 99999999998 76655554 4888888
Q ss_pred CCccEEEEEEc
Q psy8497 360 GTRGLVITIVS 370 (2355)
Q Consensus 360 GQkGkVIVLVS 370 (2355)
|.+..+++...
T Consensus 444 g~~~~~~~~~~ 454 (1638)
T PRK14701 444 GIPIEGVLDVF 454 (1638)
T ss_pred CCcchhHHHhH
Confidence 87766653333
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=318.10 Aligned_cols=343 Identities=18% Similarity=0.298 Sum_probs=259.8
Q ss_pred cccCCcHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 24 FEeLlLkpLLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
|..+....+...+.+.|+..|+.+|.+|+..+.+|+++||+.+||||||++|++||+..+.+. ...++|||.||++|+
T Consensus 51 ~~~~~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~--~~a~AL~lYPtnALa 128 (851)
T COG1205 51 FPELRDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD--PSARALLLYPTNALA 128 (851)
T ss_pred chhhhhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC--cCccEEEEechhhhH
Confidence 444433447888889999999999999999999999999999999999999999999999863 344899999999999
Q ss_pred HHHHHHHHHHhcccC-CcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHh----hcccCcCceEEEecccchhc
Q psy8497 104 VQITDVVRSVGAHVK-NLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKL----KYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 104 qQ~anwLREFgk~AP-gLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdr----r~LdLSkIdLLIVDEAHRLk 174 (2355)
+.+.+.++++....+ .+.+..|+|+..-... ...++||+|||+||..++.. -.+.+..+.+|||||+|...
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999988886 6899999999876544 45699999999999774443 22335678999999999764
Q ss_pred ccChHHHH-------HHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 175 NTGFVEDI-------TWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 175 N~GF~SrL-------eeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
.. |++.+ ..++...+...|+|++|||+.... +....+....+...+. ........+.++...+.......
T Consensus 209 Gv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 209 GV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred cc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhh
Confidence 32 33444 344444456789999999998543 4444444444444222 22333344444444442111111
Q ss_pred ----hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHH----HHHHhcC----CccEEeeCCCCHHHHHHHHHHHhCCC
Q psy8497 248 ----RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVIC----ENLANAN----FGAEYLSGAQDQKARLASLDSFKRGK 315 (2355)
Q Consensus 248 ----t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLA----DyLrErG----IKVarLHGgMSqEERqeILErFRSGE 315 (2355)
........+...+-. ..-++|+|+.++++++.+. ..+...+ ..+..++++|..++|.+++..|+.|+
T Consensus 286 ~~r~s~~~~~~~~~~~~~~-~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 286 SIRRSALAELATLAALLVR-NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hcccchHHHHHHHHHHHHH-cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 111122223333222 2359999999999999986 4444445 56888999999999999999999999
Q ss_pred ccEEEEecccccccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 316 VRILVTTDLAARGIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 316 IdVLVSTSALGEGLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
+.++++|++++.|||+..++.||....|. +..+++|++|||||.++...++++...+
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 99999999999999999999999999999 8999999999999999877777777643
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=314.70 Aligned_cols=311 Identities=19% Similarity=0.247 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEE
Q psy8497 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYF 125 (2355)
Q Consensus 46 PYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvy 125 (2355)
.+-.+.+..+.+++++||.+|||+|||+++.++++.... ..+++||++|++.++.|+.+.+.+......+..|.+.
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 334466777778889999999999999999888876432 2358999999999999999998765444446777777
Q ss_pred ECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccCh-HHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 126 IGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGF-VEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 126 tGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~GF-~SrLeeILs~LppnrQILLLSATLS 203 (2355)
++..... .....|+|+|+++|.+++... ..+..+++|||||+|. ..+..+ ...+..++..++...|+|+||||+.
T Consensus 84 vr~~~~~--~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 84 MRAESKV--GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred ecCcccc--CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 7655422 223579999999999888754 4689999999999996 444332 3344556667788899999999998
Q ss_pred hhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHH
Q psy8497 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICE 283 (2355)
Q Consensus 204 ~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLAD 283 (2355)
... +..++.++..+...... ..+.+.+..++.. .. ........+..++.. ..+.+|||++++..++.+++
T Consensus 161 ~~~---l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~--~~-~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 161 NDR---LQQLLPDAPVIVSEGRS---FPVERRYQPLPAH--QR-FDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred HHH---HHHhcCCCCEEEecCcc---ccceEEeccCchh--hh-HHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHH
Confidence 653 34556554444433221 2234433322211 11 001111234444443 34789999999999999999
Q ss_pred HHHh---cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC----------------
Q psy8497 284 NLAN---ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH---------------- 344 (2355)
Q Consensus 284 yLrE---rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~---------------- 344 (2355)
.|.. .++.+..+||+|+..+|.+++..|.+|..+|||||++++.|||||+|++||.++.+.
T Consensus 231 ~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 310 (812)
T PRK11664 231 QLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310 (812)
T ss_pred HHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEE
Confidence 9987 578899999999999999999999999999999999999999999999999977653
Q ss_pred --CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 345 --DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 345 --SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|..+++||+|||||. .+|.||.+++..+.
T Consensus 311 ~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 311 RISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred eechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346899999999997 79999999976544
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=289.49 Aligned_cols=319 Identities=34% Similarity=0.565 Sum_probs=270.2
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
...|..++++| |++++-..||..|..+|.++||...-|.+++.+|..|.|||.+|+++.|+.+. .....-.+||+|.+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie-pv~g~vsvlvmcht 119 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE-PVDGQVSVLVMCHT 119 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC-CCCCeEEEEEEecc
Confidence 45788999999 99999999999999999999999999999999999999999999999888776 33335568999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+-|+.+....|.+..|++++.+++|+..+.... .-++|+|+||.+++.+.+.+.+.+..+..+|+|||+.++.
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH
Confidence 999999999999999999999999999998765432 2489999999999999999999999999999999998774
Q ss_pred -cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCcc-ccccceEEEEeccCCCCCcchhhhHH
Q psy8497 176 -TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATR-PLLGVKQLVALIPECKNPSLRYVDEE 253 (2355)
Q Consensus 176 -~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~-~~seVrQvVvqVpe~kn~sLt~lsKk 253 (2355)
-.....+..|....|...|++.+|||++.++.....+++.+|..+.+..+.. ....++|.+..+.+. .+.
T Consensus 200 ~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~--------eKN 271 (387)
T KOG0329|consen 200 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN--------EKN 271 (387)
T ss_pred HHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh--------hhh
Confidence 3467889999999999999999999999999999999999998888776543 334555555544433 344
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
..|.++|......+|+||+.++..+. | +.+ ||+|++.++|||+..
T Consensus 272 rkl~dLLd~LeFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdier 316 (387)
T KOG0329|consen 272 RKLNDLLDVLEFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIER 316 (387)
T ss_pred hhhhhhhhhhhhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCccc
Confidence 66777777777889999998766510 2 223 899999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHH-HHHHHHHh
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV-KFHSLMGE 383 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVE-eIEsLrRe 383 (2355)
++.||+||.|-++..|++|+|||||.|.+|.+|.|++..... .+..+...
T Consensus 317 vNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdR 367 (387)
T KOG0329|consen 317 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDR 367 (387)
T ss_pred ceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHh
Confidence 999999999999999999999999999999999999765443 34444333
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=282.92 Aligned_cols=293 Identities=16% Similarity=0.207 Sum_probs=200.2
Q ss_pred HHHHHHHHHHcCCc--EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc---CCcE
Q psy8497 47 IQMAAFPYVLNGYD--AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV---KNLH 121 (2355)
Q Consensus 47 YQeEALn~LLSGRN--VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A---PgLr 121 (2355)
+|.++++.++.+.+ +||++|||+|||++++++++. ...++|||+|+++|+.|+.+.++++.... .+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN 73 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 59999999998874 788999999999999988873 13468999999999999999988886433 2566
Q ss_pred EEEEECCcccc----C--------------------CCCCCcEEEECHHHHHHHHHhhcc--------cCcCceEEEecc
Q psy8497 122 VDYFIGGTQVE----R--------------------PKRPVQIVVGSPGRIKQMIKLKYL--------NMDSVRLFIMDE 169 (2355)
Q Consensus 122 VVvytGGkq~r----k--------------------qirq~DILVTTPErLLDLLdrr~L--------dLSkIdLLIVDE 169 (2355)
+..+.|....+ . ....+.|++|||++|..++..... .+..+++|||||
T Consensus 74 v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE 153 (357)
T TIGR03158 74 LLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred EEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEec
Confidence 77777752211 0 012478999999998765543111 146889999999
Q ss_pred cchhcccCh-----HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh--ccCCeeeccCC-----------Cccc---
Q psy8497 170 ADKLINTGF-----VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY--MVDPLLIRPED-----------ATRP--- 228 (2355)
Q Consensus 170 AHRLkN~GF-----~SrLeeILs~LppnrQILLLSATLS~EILElLkKf--LrdPvIIrVes-----------ee~~--- 228 (2355)
+|.+..... ......++.......++|+||||++......+... +..+....... ....
T Consensus 154 ~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS 233 (357)
T ss_pred ccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccc
Confidence 999775331 12333444444445799999999998777777654 33332221111 0000
Q ss_pred ---c-ccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC--CccEEeeCCCCHH
Q psy8497 229 ---L-LGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN--FGAEYLSGAQDQK 302 (2355)
Q Consensus 229 ---~-seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG--IKVarLHGgMSqE 302 (2355)
. ..+...+...... ...........+.+.+......++||||++++.++.++..|.+.+ +.+..+||.+++.
T Consensus 234 ~~~~~~~i~~~~~~~~~~--~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~ 311 (357)
T TIGR03158 234 FRPVLPPVELELIPAPDF--KEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKK 311 (357)
T ss_pred cceeccceEEEEEeCCch--hHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHH
Confidence 0 1222222221111 000011111223333333455799999999999999999999865 5788899999999
Q ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccC
Q psy8497 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG 357 (2355)
Q Consensus 303 ERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAG 357 (2355)
+|.+++ ++.|||||+++++|||++.+ +|| ++ |.++..|+||+||+|
T Consensus 312 ~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 312 DRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 887653 78999999999999999976 565 45 889999999999986
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=290.76 Aligned_cols=300 Identities=19% Similarity=0.260 Sum_probs=210.1
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
..|++||.+++..+.. .+.+||++|||+|||++++.++... . ..+|||||+++|+.||.+.+..+....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-K------RSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-c------CCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 4799999999999998 7889999999999998887655433 2 239999999999999987777764321
Q ss_pred CCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
..+..+.|+...... ..|+|+|++++........+....+++|||||||++....+.. +...+.....+|+
T Consensus 108 --~~~g~~~~~~~~~~~---~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~----~~~~~~~~~~~LG 178 (442)
T COG1061 108 --DEIGIYGGGEKELEP---AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR----ILELLSAAYPRLG 178 (442)
T ss_pred --cccceecCceeccCC---CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH----HHHhhhcccceee
Confidence 134444444433222 5699999999865422223334579999999999988754333 2223222222899
Q ss_pred EEeccChhHHHHHH--HhccCCeeeccCCC----ccccccceEEEEeccCCCCCcc------------------------
Q psy8497 198 VSATYSHDNLATLQ--KYMVDPLLIRPEDA----TRPLLGVKQLVALIPECKNPSL------------------------ 247 (2355)
Q Consensus 198 LSATLS~EILElLk--KfLrdPvIIrVese----e~~~seVrQvVvqVpe~kn~sL------------------------ 247 (2355)
|||||.......+. ..+..+.++..... .....+.......+........
T Consensus 179 LTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (442)
T COG1061 179 LTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENE 258 (442)
T ss_pred eccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHH
Confidence 99998754421111 11223344433321 1122222222222211100000
Q ss_pred ------hhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEE
Q psy8497 248 ------RYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320 (2355)
Q Consensus 248 ------t~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLV 320 (2355)
....+...+..++... ...++|||+..+..+..++..|...++ +..+.+..+..+|..+++.|+.|.+++||
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv 337 (442)
T COG1061 259 ARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLV 337 (442)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 0011123333334333 356999999999999999999998888 89999999999999999999999999999
Q ss_pred EecccccccCCCCccEEEEecCCCCHhHHHHHhhccCC
Q psy8497 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGR 358 (2355)
Q Consensus 321 STSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGR 358 (2355)
++.++.+|+|+|+++++|+..+..|+..|+||+||..|
T Consensus 338 ~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 338 TVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=312.62 Aligned_cols=287 Identities=18% Similarity=0.265 Sum_probs=208.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
+...+.......|+++|..+++.++.++++++++|||+|||+ +.++++..+.. .+.++|||+||++|+.|+.+.++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHH
Confidence 666666644458999999999999999999999999999996 55555555542 36889999999999999999999
Q ss_pred HHhcccCCcE---EEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-----
Q psy8497 112 SVGAHVKNLH---VDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN----- 175 (2355)
Q Consensus 112 EFgk~APgLr---VVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN----- 175 (2355)
.+.... ++. +.+++|+..... ....++|||+||+.|.+.+.. +.. .+++|||||||+|++
T Consensus 143 ~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 143 SLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccH
Confidence 997654 333 335667654321 112489999999999877653 222 789999999999987
Q ss_pred ------cChHHH-HHHH----------------------HHhCCCCce--EEEEEecc-ChhHHHHHHHhccCCeeeccC
Q psy8497 176 ------TGFVED-ITWI----------------------YSQLPPMKQ--MLVVSATY-SHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 176 ------~GF~Sr-LeeI----------------------Ls~LppnrQ--ILLLSATL-S~EILElLkKfLrdPvIIrVe 223 (2355)
.+|... +..+ +..++...| ++++|||+ +..... .++.....+.+.
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~ 295 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVG 295 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEec
Confidence 455442 3332 223344444 56789994 433322 223333334444
Q ss_pred CCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEccc---ccHHHHHHHHHhcCCccEEeeCCCC
Q psy8497 224 DATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQ---LRPEVICENLANANFGAEYLSGAQD 300 (2355)
Q Consensus 224 see~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTR---KmAEiLADyLrErGIKVarLHGgMS 300 (2355)
........+.+.+..... ....|..++... ..++||||+++ +.++.|+.+|...|+++..+||+|+
T Consensus 296 ~~~~~~r~I~~~~~~~~~----------~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 296 GGSDTLRNVVDVYVEDED----------LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred CccccccceEEEEEeccc----------HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 333333444444432211 123455555544 35899999999 9999999999999999999999997
Q ss_pred HHHHHHHHHHHhCCCccEEEEe----cccccccCCCC-ccEEEEecCCC
Q psy8497 301 QKARLASLDSFKRGKVRILVTT----DLAARGIDAAN-VDLVINLEIPH 344 (2355)
Q Consensus 301 qEERqeILErFRSGEIdVLVST----SALGEGLDLPa-VDTVIIyDSP~ 344 (2355)
+.+++.|++|+++||||| +++++|||+|. +++||+|+.|.
T Consensus 365 ----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 ----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 378999999999999995 89999999999 89999999884
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=295.25 Aligned_cols=328 Identities=16% Similarity=0.182 Sum_probs=228.6
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|+++|..++..+.+|+ |+.+.||+|||+++++|++.... .+..++||+|++.||.|..+++..+..++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al----~G~~v~VvTpt~~LA~qd~e~~~~l~~~l- 146 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL----EGKGVHLITVNDYLAKRDAEEMGQVYEFL- 146 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH----cCCCeEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 576 89999999999888776 99999999999999999985544 37789999999999999999999999888
Q ss_pred CcEEEEEECCcc-cc--CCCCCCcEEEECHHHH-HHHHHhhc------ccCcCceEEEecccchhc-cc-----------
Q psy8497 119 NLHVDYFIGGTQ-VE--RPKRPVQIVVGSPGRI-KQMIKLKY------LNMDSVRLFIMDEADKLI-NT----------- 176 (2355)
Q Consensus 119 gLrVVvytGGkq-~r--kqirq~DILVTTPErL-LDLLdrr~------LdLSkIdLLIVDEAHRLk-N~----------- 176 (2355)
++.+.++.|+.. .. .....++|+++|+..| .+++.... ..+..+.++||||+|.++ +.
T Consensus 147 Gl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred CCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 999999999876 21 2334489999999887 45444322 345788999999999865 21
Q ss_pred ----ChHHHHHHHHHhCCCC--------ceEEEEEecc--------------Ch-------hHHHHHHH-hc-cC--Cee
Q psy8497 177 ----GFVEDITWIYSQLPPM--------KQMLVVSATY--------------SH-------DNLATLQK-YM-VD--PLL 219 (2355)
Q Consensus 177 ----GF~SrLeeILs~Lppn--------rQILLLSATL--------------S~-------EILElLkK-fL-rd--PvI 219 (2355)
.++..+..++..+... .+.+.+|..- .. .+...+.. ++ .. .++
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYi 306 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYI 306 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEE
Confidence 1234444444444321 1223333310 00 00011110 00 00 000
Q ss_pred e------ccCCC-c----------------------------c----------------------c----cccc----eE
Q psy8497 220 I------RPEDA-T----------------------------R----------------------P----LLGV----KQ 234 (2355)
Q Consensus 220 I------rVese-e----------------------------~----------------------~----~seV----rQ 234 (2355)
+ .+... . . . ...+ ..
T Consensus 307 V~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l 386 (790)
T PRK09200 307 VYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNM 386 (790)
T ss_pred EECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCC
Confidence 0 00000 0 0 0 0000 01
Q ss_pred EEEeccCCCC---------CcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 235 LVALIPECKN---------PSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 235 vVvqVpe~kn---------~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
.+..+|..+. .......+...|...+.. ....++||||.+++.++.|...|...|+.+..|||.+...+
T Consensus 387 ~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e 466 (790)
T PRK09200 387 EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKE 466 (790)
T ss_pred cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHH
Confidence 1122221110 011123444666666644 24569999999999999999999999999999999999988
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCC---CCcc-----EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHH
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDA---ANVD-----LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV 375 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDL---PaVD-----TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVE 375 (2355)
+..+...+..| .|||||+++++|+|+ |.|. +||+++.|.+...|+|++||+||.|.+|.++.|++..+.-
T Consensus 467 ~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 467 AQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred HHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHH
Confidence 88888777766 799999999999999 6898 9999999999999999999999999999999999765443
Q ss_pred H
Q psy8497 376 K 376 (2355)
Q Consensus 376 e 376 (2355)
+
T Consensus 545 ~ 545 (790)
T PRK09200 545 L 545 (790)
T ss_pred H
Confidence 3
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=290.62 Aligned_cols=318 Identities=17% Similarity=0.175 Sum_probs=223.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|+++|..+++.++.|+ |..+.||+|||++++++++.... .+..++||+|++.||.|..+++..++..+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al----~G~~v~VvTptreLA~qdae~~~~l~~~l- 171 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL----AGLPVHVITVNDYLAERDAELMRPLYEAL- 171 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh----cCCeEEEEcCcHHHHHHHHHHHHHHHhhc-
Confidence 565 88999999999999998 99999999999999999987655 36789999999999999999999999887
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHH-HHHHHhhc-------------------------ccCcCceEEEeccc
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRI-KQMIKLKY-------------------------LNMDSVRLFIMDEA 170 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErL-LDLLdrr~-------------------------LdLSkIdLLIVDEA 170 (2355)
++.+.+++|+.... .....++|+|+|...| .++|.... .-.+.+.++||||+
T Consensus 172 Glsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 172 GLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred CCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 89999999986432 2234589999998765 34443221 12356789999999
Q ss_pred chhc-cc-----------------ChHHHHHHHHHhCCCC--------c-------------------------------
Q psy8497 171 DKLI-NT-----------------GFVEDITWIYSQLPPM--------K------------------------------- 193 (2355)
Q Consensus 171 HRLk-N~-----------------GF~SrLeeILs~Lppn--------r------------------------------- 193 (2355)
+.++ +. .++..+..+...+... .
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 9753 11 1222222222222111 1
Q ss_pred ------------------------------------------------------------------------------eE
Q psy8497 194 ------------------------------------------------------------------------------QM 195 (2355)
Q Consensus 194 ------------------------------------------------------------------------------QI 195 (2355)
++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 12
Q ss_pred EEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcC--CCCeEEEEEc
Q psy8497 196 LVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT--PFNQCVIFSN 273 (2355)
Q Consensus 196 LLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl--~kgRVLVFSQ 273 (2355)
.+||||......++...|..+++.+...... .....+.+..+ ....+...|...+... ...++||||+
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~--------t~~~K~~aL~~~i~~~~~~~~pvLIft~ 481 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFL--------TAAAKWAAVAARVRELHAQGRPVLVGTR 481 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEe--------CHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3344454433333333333333222221111 00011111111 1123445566666442 2357999999
Q ss_pred ccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC---Ccc-----EEEEecCCCC
Q psy8497 274 YQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA---NVD-----LVINLEIPHD 345 (2355)
Q Consensus 274 TRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP---aVD-----TVIIyDSP~S 345 (2355)
++..++.|+..|...|+.+..|||.+...+ ..+..|..+...|||||+++++|+||+ .|. +||+++.|.+
T Consensus 482 t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s 559 (656)
T PRK12898 482 SVAASERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDS 559 (656)
T ss_pred cHHHHHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCC
Confidence 999999999999999999999999876544 444556655667999999999999999 665 9999999999
Q ss_pred HhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 346 AATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
...|+|++||+||.|.+|.++.|++..+.-+
T Consensus 560 ~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 560 ARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred HHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 9999999999999999999999998755433
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=289.56 Aligned_cols=326 Identities=15% Similarity=0.150 Sum_probs=217.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.++|||.+++..+.-.+..|+.++||+|||+++++|++.... .+..++||+|++.||.|+.+|+..+..++ ++.+
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL----~g~~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv 142 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL----TGKGAMLVTTNDYLAKRDAEEMGPVYEWL-GLTV 142 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh----cCCceEEeCCCHHHHHHHHHHHHHHHhhc-CCcE
Confidence 346666666665555555799999999999999999865544 35569999999999999999999998888 8888
Q ss_pred EEEECCccc-------cCCCCCCcEEEECHHHH-HHHHHhh------cccCcCceEEEecccchhccc------------
Q psy8497 123 DYFIGGTQV-------ERPKRPVQIVVGSPGRI-KQMIKLK------YLNMDSVRLFIMDEADKLINT------------ 176 (2355)
Q Consensus 123 VvytGGkq~-------rkqirq~DILVTTPErL-LDLLdrr------~LdLSkIdLLIVDEAHRLkN~------------ 176 (2355)
.+.+++... ......++|+++||..| .+++... ...+..+.++||||||.++-.
T Consensus 143 ~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~ 222 (762)
T TIGR03714 143 SLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAP 222 (762)
T ss_pred EEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCC
Confidence 887765211 11224589999999998 4555332 234678889999999987421
Q ss_pred ----ChHHHHHHHHHhCCCC--------ceEEEEEecc-------------C-hh-------HHHHHHH-h-cc-C-Cee
Q psy8497 177 ----GFVEDITWIYSQLPPM--------KQMLVVSATY-------------S-HD-------NLATLQK-Y-MV-D-PLL 219 (2355)
Q Consensus 177 ----GF~SrLeeILs~Lppn--------rQILLLSATL-------------S-~E-------ILElLkK-f-Lr-d-PvI 219 (2355)
.++..+..+...+... .+.+.||-.- . .. +...+.. + +. + .++
T Consensus 223 ~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYi 302 (762)
T TIGR03714 223 RVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYV 302 (762)
T ss_pred ccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 1234444444544332 1223333210 0 00 0000000 0 00 0 000
Q ss_pred e------ccCC-Cc----------------------------c----------------------c----cccc----eE
Q psy8497 220 I------RPED-AT----------------------------R----------------------P----LLGV----KQ 234 (2355)
Q Consensus 220 I------rVes-ee----------------------------~----------------------~----~seV----rQ 234 (2355)
+ .+.. .. . . ...+ ..
T Consensus 303 V~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l 382 (762)
T TIGR03714 303 VTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSL 382 (762)
T ss_pred EECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCC
Confidence 0 0000 00 0 0 0000 00
Q ss_pred EEEeccCCC---------CCcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 235 LVALIPECK---------NPSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 235 vVvqVpe~k---------n~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
-+..+|..+ ..+.....+..++...+.. ....+|||||.++..++.|...|...|+.+..|||.+.+.+
T Consensus 383 ~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E 462 (762)
T TIGR03714 383 SVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462 (762)
T ss_pred CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHH
Confidence 111222111 1111222445566665543 34569999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCC---------CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAA---------NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLP---------aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
+..+...|+.| .|+|||+++++|+||+ .+.+||.++.|..... +|++||+||.|.+|.++.|++..+.
T Consensus 463 ~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 463 AQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred HHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 88887777666 7999999999999999 8999999999987655 9999999999999999999987554
Q ss_pred HH
Q psy8497 375 VK 376 (2355)
Q Consensus 375 Ee 376 (2355)
-+
T Consensus 540 l~ 541 (762)
T TIGR03714 540 LI 541 (762)
T ss_pred hh
Confidence 43
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=288.38 Aligned_cols=328 Identities=18% Similarity=0.175 Sum_probs=242.4
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+.| +|-.+|++||-.+.++.+|+|+|+|.+|||+++-.+|...-. ...+++|..|.++|.+|.++.|++.+..
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~----h~TR~iYTSPIKALSNQKfRDFk~tF~D- 366 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK----HMTRTIYTSPIKALSNQKFRDFKETFGD- 366 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh----hccceEecchhhhhccchHHHHHHhccc-
Confidence 3555 899999999999999999999999999999999988865444 3678999999999999999999987543
Q ss_pred CCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
+.+++|+.+.... +.++|+|.|.|..++.+..--++++.+||+||+|.+-+...+..|++++-.+|...++|+
T Consensus 367 ----vgLlTGDvqinPe---AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~Il 439 (1248)
T KOG0947|consen 367 ----VGLLTGDVQINPE---ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFIL 439 (1248)
T ss_pred ----cceeecceeeCCC---cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEE
Confidence 3489999887654 679999999999999998877899999999999999888888999999999999999999
Q ss_pred EEeccChhHHHHHHHhc-cCCeeeccCCCccccccceEEEEe----c----------cC----CCCC-------------
Q psy8497 198 VSATYSHDNLATLQKYM-VDPLLIRPEDATRPLLGVKQLVAL----I----------PE----CKNP------------- 245 (2355)
Q Consensus 198 LSATLS~EILElLkKfL-rdPvIIrVesee~~~seVrQvVvq----V----------pe----~kn~------------- 245 (2355)
||||.++.. ++..+.- .+...+.+......+.++.+++.. + .. .+..
T Consensus 440 LSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~ 518 (1248)
T KOG0947|consen 440 LSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKS 518 (1248)
T ss_pred EeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccc
Confidence 999998543 3333221 111111111111111111111100 0 00 0000
Q ss_pred ----------------cchh-----------h--hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-------
Q psy8497 246 ----------------SLRY-----------V--DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN------- 289 (2355)
Q Consensus 246 ----------------sLt~-----------l--sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG------- 289 (2355)
...- . .....|+..|.....-++||||-+++.|+..+++|....
T Consensus 519 ~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EK 598 (1248)
T KOG0947|consen 519 DARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEK 598 (1248)
T ss_pred cccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhH
Confidence 0000 0 012334444444444589999999999999999998532
Q ss_pred --------------------------------CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEE
Q psy8497 290 --------------------------------FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLV 337 (2355)
Q Consensus 290 --------------------------------IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTV 337 (2355)
-+++++||++-+--+.-+.-.|..|-++||+||.++++|||+|+-.+|
T Consensus 599 seV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvV 678 (1248)
T KOG0947|consen 599 SEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVV 678 (1248)
T ss_pred HHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEE
Confidence 357889999999999999999999999999999999999999977666
Q ss_pred EEecCC---------CCHhHHHHHhhccCCCC--CccEEEEEEcc--cCHHHHHHH
Q psy8497 338 INLEIP---------HDAATYLHRMGRAGRYG--TRGLVITIVSA--ESLVKFHSL 380 (2355)
Q Consensus 338 IIyDSP---------~SPqSYIQRIGRAGRiG--QkGkVIVLVSs--dDVEeIEsL 380 (2355)
+ -..- ..|-+|.||+|||||.| ..|.||++... .....+..+
T Consensus 679 F-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 679 F-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred e-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhH
Confidence 5 2221 27899999999999998 56777777643 344444444
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=303.12 Aligned_cols=330 Identities=18% Similarity=0.234 Sum_probs=252.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
..-....+|...+++-|.++|..++.|++++|.+|||.||++||.+|++-. .+-+|||.|+.+|++.+...+.
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-------~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-------GGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-------CCceEEeccHHHHHHHHHHhhh
Confidence 444555689999999999999999999999999999999999999998632 4579999999999877777764
Q ss_pred HHhcccCCcEEEEEECCccccC----------CCCCCcEEEECHHHHHHHH--HhhcccCcC---ceEEEecccchhccc
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVER----------PKRPVQIVVGSPGRIKQMI--KLKYLNMDS---VRLFIMDEADKLINT 176 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rk----------qirq~DILVTTPErLLDLL--drr~LdLSk---IdLLIVDEAHRLkN~ 176 (2355)
.. ++....+.+...... ....++|+..|||++...- ......+.. +.++||||||.+..|
T Consensus 326 ~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 326 KK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 44 456666666654421 1123889999999875322 112223333 789999999999988
Q ss_pred C--h---HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhcc--CCeeeccCCCccccccceEEEEeccCCCCCcchh
Q psy8497 177 G--F---VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV--DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY 249 (2355)
Q Consensus 177 G--F---~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLr--dPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ 249 (2355)
+ | +..+..+....+. ..+|.||||....+.+.+...|. ++.++.... ...++... ..++.. .
T Consensus 401 gHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf---nR~NL~ye--V~~k~~-----~ 469 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFKSSF---NRPNLKYE--VSPKTD-----K 469 (941)
T ss_pred cccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceecccC---CCCCceEE--EEeccC-----c
Confidence 7 3 4555555555554 88999999999888776665443 333222211 11122222 222210 0
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccccc
Q psy8497 250 VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGI 329 (2355)
Q Consensus 250 lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGL 329 (2355)
......+..+....+....||||.++++|+.++..|...+++++.+|++|+..+|..+...|..++++|+|||=|.|+||
T Consensus 470 ~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGI 549 (941)
T KOG0351|consen 470 DALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGI 549 (941)
T ss_pred cchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCC
Confidence 01122233333444556899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 330 DLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
|.|+|+.||+|..|.+.+.|.|-+|||||.|....+++|+...+...+..++..-
T Consensus 550 dK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 550 DKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999998888888776644
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-28 Score=292.99 Aligned_cols=324 Identities=15% Similarity=0.228 Sum_probs=229.6
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|..||.++|+||. +|-+.||+++||+|||++ .++++.+|.+...-.+++|||+|.++| .+|..++..++|
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~nIwGPFLVVtpaStL----~NWaqEisrFlP 641 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHNIWGPFLVVTPASTL----HNWAQEISRFLP 641 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhccCCCceEEeehHHHH----hHHHHHHHHhCc
Confidence 88999999999987 478899999999999954 558888999888889999999999999 899999999999
Q ss_pred CcEEEEEECCccccCCC-------------CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHH
Q psy8497 119 NLHVDYFIGGTQVERPK-------------RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqi-------------rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeI 185 (2355)
.+++..|.|+...+..+ ..++|+||||+.+. .+...+..-.|.++|+|||+.++... ..++..+
T Consensus 642 ~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvV--tDeky~qkvKWQYMILDEAQAIKSSs-S~RWKtL 718 (1185)
T KOG0388|consen 642 SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVV--TDEKYLQKVKWQYMILDEAQAIKSSS-SSRWKTL 718 (1185)
T ss_pred cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeee--chHHHHHhhhhhheehhHHHHhhhhh-hhHHHHH
Confidence 99999999998766432 33899999999873 33344455678899999999987542 3455555
Q ss_pred HHhCCCCceEEEEEeccChhHHHHHHHhc---------------------------------------------------
Q psy8497 186 YSQLPPMKQMLVVSATYSHDNLATLQKYM--------------------------------------------------- 214 (2355)
Q Consensus 186 Ls~LppnrQILLLSATLS~EILElLkKfL--------------------------------------------------- 214 (2355)
+.+-. ...|+||+||.++.++.++.+|
T Consensus 719 LsF~c--RNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRR 796 (1185)
T KOG0388|consen 719 LSFKC--RNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRR 796 (1185)
T ss_pred hhhhc--cceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHH
Confidence 54432 2346666665543322221110
Q ss_pred ----------------------------------------------------cCC-------------------------
Q psy8497 215 ----------------------------------------------------VDP------------------------- 217 (2355)
Q Consensus 215 ----------------------------------------------------rdP------------------------- 217 (2355)
..|
T Consensus 797 vKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S 876 (1185)
T KOG0388|consen 797 VKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVS 876 (1185)
T ss_pred HHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHh
Confidence 000
Q ss_pred -----eeeccCCC------------------------------c----------------cc------------------
Q psy8497 218 -----LLIRPEDA------------------------------T----------------RP------------------ 228 (2355)
Q Consensus 218 -----vIIrVese------------------------------e----------------~~------------------ 228 (2355)
+.+.++.. . ..
T Consensus 877 ~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p 956 (1185)
T KOG0388|consen 877 FGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNP 956 (1185)
T ss_pred CCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCc
Confidence 00000000 0 00
Q ss_pred ----------cc------cceEEEEeccCCC---------------------------------CCcchhhhHHHHHHHH
Q psy8497 229 ----------LL------GVKQLVALIPECK---------------------------------NPSLRYVDEEKKLVQL 259 (2355)
Q Consensus 229 ----------~s------eVrQvVvqVpe~k---------------------------------n~sLt~lsKkeaLLqL 259 (2355)
+. .....+...|... +.+++...++..|..+
T Consensus 957 ~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeL 1036 (1185)
T KOG0388|consen 957 ESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDEL 1036 (1185)
T ss_pred ccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHH
Confidence 00 0000000000000 0000111222333333
Q ss_pred HhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCcc-EEEEecccccccCCCCccE
Q psy8497 260 LSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR-ILVTTDLAARGIDAANVDL 336 (2355)
Q Consensus 260 Lerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEId-VLVSTSALGEGLDLPaVDT 336 (2355)
|... .+++||+|.++.+|++.+.+||..+++.+.+|+|.....+|..++..|...++. ||++|++++.||||.++++
T Consensus 1037 L~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADT 1116 (1185)
T KOG0388|consen 1037 LPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADT 1116 (1185)
T ss_pred HHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccce
Confidence 3332 357999999999999999999999999999999999999999999999987655 5899999999999999999
Q ss_pred EEEecCCCCHhHHHHHhhccCCCCCccE--EEEEEcccCHHH
Q psy8497 337 VINLEIPHDAATYLHRMGRAGRYGTRGL--VITIVSAESLVK 376 (2355)
Q Consensus 337 VIIyDSP~SPqSYIQRIGRAGRiGQkGk--VIVLVSsdDVEe 376 (2355)
||+||++|||..+.|++.||||.|+... |+.++...++++
T Consensus 1117 ViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1117 VIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred EEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 9999999999999999999999997654 555555555443
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=284.74 Aligned_cols=317 Identities=23% Similarity=0.247 Sum_probs=223.0
Q ss_pred CCcHHHHHHHHHHHcC---CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNG---YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG---RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg 119 (2355)
.|+++|.++++.+..+ .+++|.++||+|||.+|+.++...+. .+.++|||+|+++|+.|+.+.+++.+ +
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----~g~~vLvLvPt~~L~~Q~~~~l~~~f----g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA----QGKQALVLVPEIALTPQMLARFRARF----G 215 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHHHHHh----C
Confidence 6999999999999874 67999999999999999988777665 26789999999999999999998864 4
Q ss_pred cEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-----h-HHHHHHH
Q psy8497 120 LHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-----F-VEDITWI 185 (2355)
Q Consensus 120 LrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-----F-~SrLeeI 185 (2355)
..+.+++|+..... .....+|||+|+..+ ++.+.++++|||||+|...-.. + ...+ .+
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-------~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~ 287 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-------FLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AV 287 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-------cccccCCCEEEEECCCccccccCcCCCCcHHHH-HH
Confidence 57888888754321 123478999999876 2457888999999999765322 1 1222 23
Q ss_pred HHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCc--cccccceEEEEeccCCC--CCcchhhhHHHHHHHHHh
Q psy8497 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDAT--RPLLGVKQLVALIPECK--NPSLRYVDEEKKLVQLLS 261 (2355)
Q Consensus 186 Ls~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee--~~~seVrQvVvqVpe~k--n~sLt~lsKkeaLLqLLe 261 (2355)
........++|++|||++.+....+.. .....+...... .....+ .++..-.... ............+.+.+.
T Consensus 288 ~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v-~~id~~~~~~~~~~~~ls~~l~~~i~~~l~ 364 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEV-EIIDMRELLRGENGSFLSPPLLEAIKQRLE 364 (679)
T ss_pred HHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeE-EEEechhhhhhcccCCCCHHHHHHHHHHHH
Confidence 334456789999999998665544332 111112121111 111111 1111100000 001111223334444443
Q ss_pred cCCCCeEEEEEccc------------------------------------------------------------ccHHHH
Q psy8497 262 QTPFNQCVIFSNYQ------------------------------------------------------------LRPEVI 281 (2355)
Q Consensus 262 rl~kgRVLVFSQTR------------------------------------------------------------KmAEiL 281 (2355)
. +.++|||++.+ .-++.+
T Consensus 365 ~--g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 365 R--GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred c--CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 3 35788887642 145678
Q ss_pred HHHHHhc--CCccEEeeCCCC--HHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCC------------
Q psy8497 282 CENLANA--NFGAEYLSGAQD--QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHD------------ 345 (2355)
Q Consensus 282 ADyLrEr--GIKVarLHGgMS--qEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~S------------ 345 (2355)
++.|.+. +.++.++|+++. ..++..+++.|++|+++|||+|++++.|+|+|.+++|++++.+..
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~ 522 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERT 522 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHH
Confidence 8888876 778999999986 467899999999999999999999999999999999999887742
Q ss_pred HhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 346 AATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
.+.|+|++|||||.+..|.|++.....+...+..+
T Consensus 523 ~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 523 FQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred HHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 36799999999999999999999877665555544
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=290.04 Aligned_cols=340 Identities=21% Similarity=0.237 Sum_probs=249.0
Q ss_pred CCCCCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCC-------CCCeEEEEcccHHHHHHHHHHH
Q psy8497 39 NGFVKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPV-------QQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~-------qggRVLILVPTRALAqQ~anwL 110 (2355)
.|...|.++|......++.+ .++++|||||+|||.++++.||+.+..... ...+++|++|+++|++.|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 46667999999999998876 579999999999999999999998875322 3457999999999999999888
Q ss_pred HHHhcccCCcEEEEEECCcccc-CCCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccChHHHHHHHHH
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~r-kqirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs 187 (2355)
.+....+ ++.|.-.+|+.... ..+....|||||||...-.-+. +....+-++++||||+|.+-+. .++.++.|..
T Consensus 385 SkRla~~-GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESIVa 462 (1674)
T KOG0951|consen 385 SKRLAPL-GITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESIVA 462 (1674)
T ss_pred Hhhcccc-CcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHHHHHH
Confidence 8877777 89999999987643 3455588999999987333322 1223456789999999977443 3355544443
Q ss_pred hC-------CCCceEEEEEeccChhHHHHHHHhcc-CCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHH
Q psy8497 188 QL-------PPMKQMLVVSATYSHDNLATLQKYMV-DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL 259 (2355)
Q Consensus 188 ~L-------ppnrQILLLSATLS~EILElLkKfLr-dPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqL 259 (2355)
.. ....++++||||+++.. ....|+. ++.-+........+.++.|-++-+..................++
T Consensus 463 Rt~r~ses~~e~~RlVGLSATLPNy~--DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKV 540 (1674)
T KOG0951|consen 463 RTFRRSESTEEGSRLVGLSATLPNYE--DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKV 540 (1674)
T ss_pred HHHHHhhhcccCceeeeecccCCchh--hhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHH
Confidence 32 34689999999999543 3333332 22222223333444555555555544433332233333556667
Q ss_pred HhcCCCCeEEEEEcccccHHHHHHHHHh-------------------------------------cCCccEEeeCCCCHH
Q psy8497 260 LSQTPFNQCVIFSNYQLRPEVICENLAN-------------------------------------ANFGAEYLSGAQDQK 302 (2355)
Q Consensus 260 Lerl~kgRVLVFSQTRKmAEiLADyLrE-------------------------------------rGIKVarLHGgMSqE 302 (2355)
+.....++||||+.+++..-..+..++. ..++++++|.+|...
T Consensus 541 m~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~ 620 (1674)
T KOG0951|consen 541 LEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRK 620 (1674)
T ss_pred HHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcc
Confidence 7777778999999999988777766662 126789999999999
Q ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCccEEE----EecCCC------CHhHHHHHhhccCCCC--CccEEEEEEc
Q psy8497 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI----NLEIPH------DAATYLHRMGRAGRYG--TRGLVITIVS 370 (2355)
Q Consensus 303 ERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI----IyDSP~------SPqSYIQRIGRAGRiG--QkGkVIVLVS 370 (2355)
+|..+.+.|..|.++|||+|.++++|+|+|+.+++| .||+.. +|.+.+||+|||||.+ +.+..|++..
T Consensus 621 dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 621 DRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred hHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 999999999999999999999999999999888777 566543 8999999999999976 5567777776
Q ss_pred ccCHHHHHHHHH
Q psy8497 371 AESLVKFHSLMG 382 (2355)
Q Consensus 371 sdDVEeIEsLrR 382 (2355)
..+...+..+++
T Consensus 701 ~se~qyyls~mn 712 (1674)
T KOG0951|consen 701 HSELQYYLSLMN 712 (1674)
T ss_pred chHhhhhHHhhh
Confidence 666666555443
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=283.58 Aligned_cols=263 Identities=17% Similarity=0.200 Sum_probs=191.2
Q ss_pred CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEE
Q psy8497 191 PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVI 270 (2355)
Q Consensus 191 pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLV 270 (2355)
...|+|++||||.....+....-+ -..++++.....+...++....++.+. ...+..... ...||||
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~~~v-veQiIRPTGLlDP~ievRp~~~QvdDL----------~~EI~~r~~--~~eRvLV 451 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSGGNV-VEQIIRPTGLLDPEIEVRPTKGQVDDL----------LSEIRKRVA--KNERVLV 451 (663)
T ss_pred hcCCEEEEECCCChHHHHhccCce-eEEeecCCCCCCCceeeecCCCcHHHH----------HHHHHHHHh--cCCeEEE
Confidence 356999999999977666655322 235667777666666665554444332 122222222 3369999
Q ss_pred EEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC-----C
Q psy8497 271 FSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH-----D 345 (2355)
Q Consensus 271 FSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~-----S 345 (2355)
.+-|++|++.|.+||.+.|+++.++|+++...||.++|..++.|.++|||+.+.+.+|||+|+|.+|.|+|.++ |
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRs 531 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRS 531 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 8
Q ss_pred HhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH-----HHhhccccccccCCCccchhhhhhhHHHHHHHHHhCCccH
Q psy8497 346 AATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL-----MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQ 420 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL-----rReLKLKLaLe~eIVPkgLlKeqiDw~~~LERILKnPLde 420 (2355)
..+++|.||||+| +..|+||+|.+..+..|-+.+ ++..++.+...+.++|+.+.+.+.+......... .
T Consensus 532 e~SLIQtIGRAAR-N~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~~~~~~~-~---- 605 (663)
T COG0556 532 ERSLIQTIGRAAR-NVNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEED-E---- 605 (663)
T ss_pred cchHHHHHHHHhh-ccCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhhhhhhhh-h----
Confidence 9999999999999 789999999999888886666 5577888889999999998888744332211100 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccCCCChhhhhcccccccCccccccccccc
Q psy8497 421 AQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEE 472 (2355)
Q Consensus 421 eqErEELEQLeeElkKIEneLkeLga~~kEaaeKe~~KeAakWrdddGQlEE 472 (2355)
..............++.++.++.+...|.+++.+..|+.++.+++...++.+
T Consensus 606 ~~~~~~~~~~~~~~~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~ 657 (663)
T COG0556 606 YKAKIEKKASKMSKKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKE 657 (663)
T ss_pred hhhhcccccccCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 0000000000001122233334445556677777778888887776655544
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=295.17 Aligned_cols=338 Identities=20% Similarity=0.266 Sum_probs=227.6
Q ss_pred CCcHHHHHHHHHHH--c--CCcEEEEccCCchHHHHHHHHHHHHHHhc-----CCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVL--N--GYDAIVQSKSGTGKSIVFVVAALNKLIKL-----PVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 43 eLRPYQeEALn~LL--S--GRNVILAAPTGSGKTLVALIAILerL~ek-----r~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.||.||+++++||. . +-+.|+|+.||+|||++.+-.+..-..+. .....+.|||||. +|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 67999999999974 2 45799999999999987664444333321 1134568999997 6766666666655
Q ss_pred hcccCCcEEEEEECCccccCCCC----CCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC
Q psy8497 114 GAHVKNLHVDYFIGGTQVERPKR----PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189 (2355)
Q Consensus 114 gk~APgLrVVvytGGkq~rkqir----q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L 189 (2355)
+|-++|..|+|....+...+ ..+|||++|+.+.+-.. .+.-..|.++|+||.|.++|.. ..+....+.+
T Consensus 1054 ---~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~k--tkl~kavkqL 1126 (1549)
T KOG0392|consen 1054 ---FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSK--TKLTKAVKQL 1126 (1549)
T ss_pred ---cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchH--HHHHHHHHHH
Confidence 45689999999877664433 37999999999875443 3345678899999999999865 6666666666
Q ss_pred CCCceEEEEEeccChhHHHHHHHhc------------------cCCeeeccCCC--------------------------
Q psy8497 190 PPMKQMLVVSATYSHDNLATLQKYM------------------VDPLLIRPEDA-------------------------- 225 (2355)
Q Consensus 190 ppnrQILLLSATLS~EILElLkKfL------------------rdPvIIrVese-------------------------- 225 (2355)
.... .++||+||.++....++.++ .+|+.-.....
T Consensus 1127 ~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 5444 46689988765443332211 00100000000
Q ss_pred --------ccccccceEEEE--------------------------------------------ecc-CCCCCcc-----
Q psy8497 226 --------TRPLLGVKQLVA--------------------------------------------LIP-ECKNPSL----- 247 (2355)
Q Consensus 226 --------e~~~seVrQvVv--------------------------------------------qVp-e~kn~sL----- 247 (2355)
..+...++.++. ++. .+.++.+
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 000000000000 000 0000000
Q ss_pred ---------------------hhhhHHHHHHHHHhcC----------------CCCeEEEEEcccccHHHHHHHHHhc--
Q psy8497 248 ---------------------RYVDEEKKLVQLLSQT----------------PFNQCVIFSNYQLRPEVICENLANA-- 288 (2355)
Q Consensus 248 ---------------------t~lsKkeaLLqLLerl----------------~kgRVLVFSQTRKmAEiLADyLrEr-- 288 (2355)
....++.+|.++|... ..+|+|||||-+.+++.+.+-|-+.
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 1123446666666433 2379999999999999999887664
Q ss_pred -CCccEEeeCCCCHHHHHHHHHHHhCC-CccEE-EEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEE
Q psy8497 289 -NFGAEYLSGAQDQKARLASLDSFKRG-KVRIL-VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365 (2355)
Q Consensus 289 -GIKVarLHGgMSqEERqeILErFRSG-EIdVL-VSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkV 365 (2355)
.+.+.+|+|.+++.+|+++.++|+++ .++|| ++|.++|.||||..+|+||+++-+|||..++|+|-||||+||+-.|
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 34566999999999999999999987 78875 5779999999999999999999999999999999999999988766
Q ss_pred EEEEcccCHHHHHHHHHhhccccc
Q psy8497 366 ITIVSAESLVKFHSLMGEINLDHA 389 (2355)
Q Consensus 366 IVLVSsdDVEeIEsLrReLKLKLa 389 (2355)
-+|..-......+++|.-.+.++.
T Consensus 1446 NVyRlItrGTLEEKVMgLQkFKmn 1469 (1549)
T KOG0392|consen 1446 NVYRLITRGTLEEKVMGLQKFKMN 1469 (1549)
T ss_pred eeeeehhcccHHHHHhhHHHHhhH
Confidence 555544444444455444444443
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=279.33 Aligned_cols=327 Identities=17% Similarity=0.180 Sum_probs=225.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHH-HHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAAL-NKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAIL-erL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
+|+ .|+++|..+...+..|+ |..++||+|||++++++++ ..+. +..++||+|+..||.|..+|+..+...+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 565 88999999988887776 9999999999999999985 4443 5579999999999999999999999888
Q ss_pred CCcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhh------cccCcCceEEEecccchhcc-cC----------
Q psy8497 118 KNLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLK------YLNMDSVRLFIMDEADKLIN-TG---------- 177 (2355)
Q Consensus 118 PgLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr------~LdLSkIdLLIVDEAHRLkN-~G---------- 177 (2355)
++++.+++|+..... ....++|+|+||..| .+++... .+.+..+.++||||+|+++- ..
T Consensus 125 -GLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 125 -GLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred -CCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 899999999865332 223389999999998 7877665 34578899999999998652 11
Q ss_pred -----hHHHHHHHHHhCCC--------CceEEEEEec--------------cCh-------hHHHHHHH-h-cc-C-Cee
Q psy8497 178 -----FVEDITWIYSQLPP--------MKQMLVVSAT--------------YSH-------DNLATLQK-Y-MV-D-PLL 219 (2355)
Q Consensus 178 -----F~SrLeeILs~Lpp--------nrQILLLSAT--------------LS~-------EILElLkK-f-Lr-d-PvI 219 (2355)
.+.....+...+.. ..+.+.||.. ... .+...+.. + +. + .++
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 11112222222221 1122223220 000 00000000 0 00 0 000
Q ss_pred e------ccCC-Ccc--------------------------------------------------c----cccc----eE
Q psy8497 220 I------RPED-ATR--------------------------------------------------P----LLGV----KQ 234 (2355)
Q Consensus 220 I------rVes-ee~--------------------------------------------------~----~seV----rQ 234 (2355)
+ .+.. ... . ...+ ..
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 0 0000 000 0 0000 00
Q ss_pred EEEeccCCC---------CCcchhhhHHHHHHHHH--hcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 235 LVALIPECK---------NPSLRYVDEEKKLVQLL--SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 235 vVvqVpe~k---------n~sLt~lsKkeaLLqLL--erl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
-+..+|..+ ..+.....+..++...+ ....+.+|||||.++..++.|...|...|+.+..||+. +.+
T Consensus 364 ~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~ 441 (745)
T TIGR00963 364 EVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHE 441 (745)
T ss_pred CEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHH
Confidence 011122111 01111223334444433 22345699999999999999999999999999999998 789
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCC-------ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAAN-------VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPa-------VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
|...+..|..+...|+|||+++++|+||+. .-+||.++.|.|...|.|++||+||.|.+|.++.|++..+.-+
T Consensus 442 rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 442 REAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred HHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 999999999999999999999999999998 5599999999999999999999999999999999998766544
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=286.05 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=105.8
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC--CccEEEEecccccccCCCCccEEEEecC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG--KVRILVTTDLAARGIDAANVDLVINLEI 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG--EIdVLVSTSALGEGLDLPaVDTVIIyDS 342 (2355)
++|||||++|.+|++.|..+|...|+-|.+|+|....++|+.++++|+.. .+++|++|+.++.||||..+|+||+||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 47999999999999999999999999999999999999999999999964 4788999999999999999999999999
Q ss_pred CCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 343 PHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 343 P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
+|||..+.|+.-|+||+|+.-.|.+|....+....+.|++..
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 999999999999999999766655555444444445555544
|
|
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-27 Score=274.40 Aligned_cols=321 Identities=16% Similarity=0.227 Sum_probs=249.6
Q ss_pred CCcHHHHHHHHHHHcC---CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNG---YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG---RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg 119 (2355)
.++|||+++|..++.+ ++.||+.|+|+|||++.+.+++.. .+.+||||.+...+.||...++.|.... +
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-------kK~clvLcts~VSVeQWkqQfk~wsti~-d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ-D 373 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-------cccEEEEecCccCHHHHHHHHHhhcccC-c
Confidence 5699999999999975 569999999999999998777643 5679999999999999999999987655 5
Q ss_pred cEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh--------hcccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 120 LHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL--------KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 120 LrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr--------r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
-.+..++.+..... ...+.|+|+||.++...-.+ +++.-+.|++||+||+|.+....|...+..+..+.+
T Consensus 374 ~~i~rFTsd~Ke~~-~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcK- 451 (776)
T KOG1123|consen 374 DQICRFTSDAKERF-PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCK- 451 (776)
T ss_pred cceEEeeccccccC-CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhh-
Confidence 66777887766432 33478999999987532221 455678999999999999988877777776666665
Q ss_pred CceEEEEEeccChhHHHHHH-HhccCCeeeccC----CCccccccceEEEEeccCCCCCcchhh---hHHHH--------
Q psy8497 192 MKQMLVVSATYSHDNLATLQ-KYMVDPLLIRPE----DATRPLLGVKQLVALIPECKNPSLRYV---DEEKK-------- 255 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLk-KfLrdPvIIrVe----see~~~seVrQvVvqVpe~kn~sLt~l---sKkea-------- 255 (2355)
|+||||+-.+...+.. .||..|.++... ........++...+|++....-+..++ ..+..
T Consensus 452 ----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~ 527 (776)
T KOG1123|consen 452 ----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPN 527 (776)
T ss_pred ----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcc
Confidence 9999999877655443 566666665443 223445667888888886644333332 22222
Q ss_pred -------HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHh-CCCccEEEEeccccc
Q psy8497 256 -------LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFK-RGKVRILVTTDLAAR 327 (2355)
Q Consensus 256 -------LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFR-SGEIdVLVSTSALGE 327 (2355)
|.+..++ .+.++|||+.++-.+..++-.|.+ -+|+|.+++.||.+||+.|+ +..++.++.+.++..
T Consensus 528 KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDt 601 (776)
T KOG1123|consen 528 KFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDT 601 (776)
T ss_pred hhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCc
Confidence 2232233 457999999999888888877765 67999999999999999999 578899999999999
Q ss_pred ccCCCCccEEEEecCCC-CHhHHHHHhhccCCCC------CccEEEEEEcccCHHHHHHHHHh
Q psy8497 328 GIDAANVDLVINLEIPH-DAATYLHRMGRAGRYG------TRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiG------QkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
.||||+++++|.+.+.. |..+-.||+||..|.- .....+.+++.++.+|+....+.
T Consensus 602 SiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ 664 (776)
T KOG1123|consen 602 SIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQ 664 (776)
T ss_pred cccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhh
Confidence 99999999999998887 8899999999999853 45678889999999998877553
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=269.77 Aligned_cols=297 Identities=20% Similarity=0.223 Sum_probs=203.6
Q ss_pred EEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------
Q psy8497 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-------- 133 (2355)
Q Consensus 62 ILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-------- 133 (2355)
+|.++||+|||++|+.++...+. .++++|||+|+.+|+.|+.+.+++.+ +..+.+++++.....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~----~g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA----LGKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHH
Confidence 57899999999999877665554 36789999999999999999998865 356778887653321
Q ss_pred CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-----hH-HHHHHHHHhCCCCceEEEEEeccChhHH
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-----FV-EDITWIYSQLPPMKQMLVVSATYSHDNL 207 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-----F~-SrLeeILs~LppnrQILLLSATLS~EIL 207 (2355)
.....+|||+|+..+ +..+.++++|||||+|...-.+ |. ..+..+. ......++|++||||+.+..
T Consensus 73 ~~g~~~IVVGTrsal-------f~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~SATPsles~ 144 (505)
T TIGR00595 73 KNGEILVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGSATPSLESY 144 (505)
T ss_pred HcCCCCEEECChHHH-------cCcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEeCCCCHHHH
Confidence 112478999999876 2457788999999999865322 11 2233333 33457889999999986654
Q ss_pred HHHHHhccCCe-eeccCCCc-cccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEccccc--------
Q psy8497 208 ATLQKYMVDPL-LIRPEDAT-RPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLR-------- 277 (2355)
Q Consensus 208 ElLkKfLrdPv-IIrVesee-~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKm-------- 277 (2355)
..+.. ... .+...... ........++. +................+.+.+... .++|||++++-.
T Consensus 145 ~~~~~---g~~~~~~l~~r~~~~~~p~v~vid-~~~~~~~~~ls~~l~~~i~~~l~~g--~qvLvflnrrGya~~~~C~~ 218 (505)
T TIGR00595 145 HNAKQ---KAYRLLVLTRRVSGRKPPEVKLID-MRKEPRQSFLSPELITAIEQTLAAG--EQSILFLNRRGYSKNLLCRS 218 (505)
T ss_pred HHHhc---CCeEEeechhhhcCCCCCeEEEEe-cccccccCCccHHHHHHHHHHHHcC--CcEEEEEeCCcCCCeeEhhh
Confidence 44321 111 11111110 01111111111 1111100111222334444555433 589999775532
Q ss_pred ----------------------------------------------------HHHHHHHHHhc--CCccEEeeCCCCHHH
Q psy8497 278 ----------------------------------------------------PEVICENLANA--NFGAEYLSGAQDQKA 303 (2355)
Q Consensus 278 ----------------------------------------------------AEiLADyLrEr--GIKVarLHGgMSqEE 303 (2355)
.+.+++.|.+. +.++.++|+++....
T Consensus 219 Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~ 298 (505)
T TIGR00595 219 CGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRK 298 (505)
T ss_pred CcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCc
Confidence 47888888876 678999999998766
Q ss_pred H--HHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC------------CHhHHHHHhhccCCCCCccEEEEEE
Q psy8497 304 R--LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH------------DAATYLHRMGRAGRYGTRGLVITIV 369 (2355)
Q Consensus 304 R--qeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~------------SPqSYIQRIGRAGRiGQkGkVIVLV 369 (2355)
+ ..+++.|++|+++|||+|++++.|+|+|.+++|++++.+. ..+.++|++|||||.++.|.|++..
T Consensus 299 ~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 299 GAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred cHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 5 8899999999999999999999999999999999888874 2468999999999999999999888
Q ss_pred cccCHHHHHHH
Q psy8497 370 SAESLVKFHSL 380 (2355)
Q Consensus 370 SsdDVEeIEsL 380 (2355)
...+...+..+
T Consensus 379 ~~p~~~~~~~~ 389 (505)
T TIGR00595 379 YNPNHPAIQAA 389 (505)
T ss_pred CCCCCHHHHHH
Confidence 66655544443
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=266.31 Aligned_cols=315 Identities=19% Similarity=0.230 Sum_probs=238.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+.+.+..+.| +|+..|++++..|... .+=+|++..|||||++++++++..+. .+.++.+.+||..||.|
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~----~G~Q~ALMAPTEILA~Q 326 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE----AGYQAALMAPTEILAEQ 326 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH----cCCeeEEeccHHHHHHH
Confidence 5566677887 9999999999999864 24699999999999999999998776 48899999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
.++.+.+++..+ +++|..++|....... ....+|||+|.. +..+...+.++.++||||=||
T Consensus 327 H~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHR----- 395 (677)
T COG1200 327 HYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHR----- 395 (677)
T ss_pred HHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeecceeEEEEecccc-----
Confidence 999999999887 7999999998654321 223899999964 334555688899999999999
Q ss_pred hHHHHHHHHHhCCC-CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHH
Q psy8497 178 FVEDITWIYSQLPP-MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256 (2355)
Q Consensus 178 F~SrLeeILs~Lpp-nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaL 256 (2355)
|+..-...+..-.. .+.+|.|||||.+..+.+..- .+-.+..+........++.-........ ....+.+
T Consensus 396 FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~f--gDldvS~IdElP~GRkpI~T~~i~~~~~-------~~v~e~i 466 (677)
T COG1200 396 FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAF--GDLDVSIIDELPPGRKPITTVVIPHERR-------PEVYERI 466 (677)
T ss_pred ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHh--ccccchhhccCCCCCCceEEEEeccccH-------HHHHHHH
Confidence 44444555555555 688999999999876655432 2222222222222222333222222111 1122333
Q ss_pred HHHHhcCCCCeEEEEEcccccH--------HHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q psy8497 257 VQLLSQTPFNQCVIFSNYQLRP--------EVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA 326 (2355)
Q Consensus 257 LqLLerl~kgRVLVFSQTRKmA--------EiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG 326 (2355)
...+. .+.++.|.|+-++.. +.++..|... ++++..+||.|+..++.++++.|++|+++|||||.+++
T Consensus 467 ~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIE 544 (677)
T COG1200 467 REEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIE 544 (677)
T ss_pred HHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEE
Confidence 33333 346899999876654 4555666643 56799999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEcccC
Q psy8497 327 RGIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSAES 373 (2355)
Q Consensus 327 EGLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSsdD 373 (2355)
+|||+|+++++||.++.. -..++-|..||+||.+....|++++....
T Consensus 545 VGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 545 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred ecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999885 88999999999999888999999987655
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-26 Score=275.05 Aligned_cols=313 Identities=17% Similarity=0.193 Sum_probs=240.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
+|-|+|..+|.-+-++.+++|.|.|.+|||+++..+|...|.. +.+|||..|.++|.+|.++.+..-+. .|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~----kQRVIYTSPIKALSNQKYREl~~EF~-----DV 199 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE----KQRVIYTSPIKALSNQKYRELLEEFK-----DV 199 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh----cCeEEeeChhhhhcchhHHHHHHHhc-----cc
Confidence 7899999999999999999999999999999999999998884 77899999999999999988876543 46
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATL 202 (2355)
.+.+|+...... +..+|+|.|.|..++.++.--+..+.|||+||+|.|.+...+..|++.+-.+|...+.++||||+
T Consensus 200 GLMTGDVTInP~---ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 200 GLMTGDVTINPD---ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred ceeecceeeCCC---CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccC
Confidence 788998876543 67999999999999999888889999999999999999888899999999999999999999999
Q ss_pred ChhHHHHHHHh---ccCCeeeccCCCccccccceEE---------EEeccCCCCCcch----------------------
Q psy8497 203 SHDNLATLQKY---MVDPLLIRPEDATRPLLGVKQL---------VALIPECKNPSLR---------------------- 248 (2355)
Q Consensus 203 S~EILElLkKf---LrdPvIIrVesee~~~seVrQv---------VvqVpe~kn~sLt---------------------- 248 (2355)
++.. ++..+. ...|.-+....-.+ -+++++ +..+++. ..+..
T Consensus 277 PNA~-qFAeWI~~ihkQPcHVVYTdyRP--TPLQHyifP~ggdGlylvVDek-~~FrednF~~am~~l~~~~~~~~~~~~ 352 (1041)
T KOG0948|consen 277 PNAR-QFAEWICHIHKQPCHVVYTDYRP--TPLQHYIFPAGGDGLYLVVDEK-GKFREDNFQKAMSVLRKAGESDGKKKA 352 (1041)
T ss_pred CCHH-HHHHHHHHHhcCCceEEeecCCC--CcceeeeecCCCCeeEEEEecc-cccchHHHHHHHHHhhccCCCcccccc
Confidence 8543 333322 23333332222111 111111 1111111 00000
Q ss_pred --------------hhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-------------------------
Q psy8497 249 --------------YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN------------------------- 289 (2355)
Q Consensus 249 --------------~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG------------------------- 289 (2355)
.....-.++..+......+||||+-+++.|+.++-.|.+..
T Consensus 353 ~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeD 432 (1041)
T KOG0948|consen 353 NKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEED 432 (1041)
T ss_pred ccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhh
Confidence 00112345555555566799999999999999998887532
Q ss_pred --------------CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC--------CHh
Q psy8497 290 --------------FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH--------DAA 347 (2355)
Q Consensus 290 --------------IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~--------SPq 347 (2355)
-++.++|+++-+--++.+.=.|.+|-++||+||.+...|||.|+-++|+..---| +.-
T Consensus 433 r~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissG 512 (1041)
T KOG0948|consen 433 RELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSG 512 (1041)
T ss_pred ccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeeccc
Confidence 3578899999999999999999999999999999999999999877776322222 677
Q ss_pred HHHHHhhccCCCCC--ccEEEEEEcc
Q psy8497 348 TYLHRMGRAGRYGT--RGLVITIVSA 371 (2355)
Q Consensus 348 SYIQRIGRAGRiGQ--kGkVIVLVSs 371 (2355)
+|+||.|||||.|. .|.||++++.
T Consensus 513 EYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 513 EYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred ceEEecccccccCCCCCceEEEEecC
Confidence 99999999999995 4666666654
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=261.45 Aligned_cols=337 Identities=20% Similarity=0.238 Sum_probs=239.8
Q ss_pred HHHHHHH-CCCCCC-cHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKE-SPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITD 108 (2355)
Q Consensus 32 LLK~Lqa-~GF~eL-RPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~an 108 (2355)
+...|++ +|+..+ ++.|++++..+..+ .+|.|++|||+||++||.+++|.. ++-+||+.|+.+|+..+.+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------GGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------CCeEEEehHHHHHHHHHHH
Confidence 5556655 576644 78999999998875 689999999999999999998743 4578999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCcc-----ccCCCCCCcEEEECHHHHHHHHHh----hcccCcCceEEEecccchhcccC--
Q psy8497 109 VVRSVGAHVKNLHVDYFIGGTQ-----VERPKRPVQIVVGSPGRIKQMIKL----KYLNMDSVRLFIMDEADKLINTG-- 177 (2355)
Q Consensus 109 wLREFgk~APgLrVVvytGGkq-----~rkqirq~DILVTTPErLLDLLdr----r~LdLSkIdLLIVDEAHRLkN~G-- 177 (2355)
-+..+.-....++..+.+-... .........|++.|||+...-... ....-..+.+|||||||.+..|+
T Consensus 80 HL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHD 159 (641)
T KOG0352|consen 80 HLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHD 159 (641)
T ss_pred HHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccc
Confidence 9988854443333322221110 011222367999999975322222 12223456799999999999887
Q ss_pred hHHHHH---HHHHhCCCCceEEEEEeccChhHHHHHHHh--ccCCeeeccCCCccccc-cceEEEEeccCCCCCcchhhh
Q psy8497 178 FVEDIT---WIYSQLPPMKQMLVVSATYSHDNLATLQKY--MVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVD 251 (2355)
Q Consensus 178 F~SrLe---eILs~LppnrQILLLSATLS~EILElLkKf--LrdPvIIrVesee~~~s-eVrQvVvqVpe~kn~sLt~ls 251 (2355)
|...+. .+...+ +....|.||||....+.+.+..- |.+|+.+.....-.... --.++...+.++ +..
T Consensus 160 FRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~------~~~ 232 (641)
T KOG0352|consen 160 FRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDC------LTV 232 (641)
T ss_pred cCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhH------hHh
Confidence 433333 333334 46778999999998888766543 45555443222110000 000000011111 000
Q ss_pred HHHHHHHHHh------cCC---CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe
Q psy8497 252 EEKKLVQLLS------QTP---FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322 (2355)
Q Consensus 252 KkeaLLqLLe------rl~---kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST 322 (2355)
....-...|. ..+ .+--||||.|+..++.|+-.|..+|+.+..+|.++...||.++.+.|.++++.||++|
T Consensus 233 LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT 312 (641)
T KOG0352|consen 233 LADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAAT 312 (641)
T ss_pred HHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEE
Confidence 1111111111 111 1357999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 323 SALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
...++|+|-|+|++||+.+.+.|...|.|-.|||||.|....+.+|++..+...+.-+++
T Consensus 313 ~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 313 VSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred eccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988877665543
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=276.70 Aligned_cols=325 Identities=18% Similarity=0.224 Sum_probs=241.4
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 34 K~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.....++| .|-++|++++..|.++.+|+|++|||+|||+++..++...+.. +.+++|+.|.++|..|.+..+...
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~----~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD----GQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc----CCceEeccchhhhhhhHHHHHHHH
Confidence 34445777 8999999999999999999999999999999999999888774 666999999999999999988876
Q ss_pred hcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCc
Q psy8497 114 GAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193 (2355)
Q Consensus 114 gk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppnr 193 (2355)
+... .-.+.+++|+...... +.|+|+|.|.|.+++.+....+..+.+||+||+|.+.+...+..++.++-.+|...
T Consensus 186 fgdv-~~~vGL~TGDv~IN~~---A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 186 FGDV-ADMVGLMTGDVSINPD---APCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred hhhh-hhhccceecceeeCCC---CceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 5433 2346889998876543 77999999999999999888899999999999999999989999999999999999
Q ss_pred eEEEEEeccChhHHHH--HHHhccCCeeeccCCCccccccceE-------EEEeccCCCC---Cc-------c-------
Q psy8497 194 QMLVVSATYSHDNLAT--LQKYMVDPLLIRPEDATRPLLGVKQ-------LVALIPECKN---PS-------L------- 247 (2355)
Q Consensus 194 QILLLSATLS~EILEl--LkKfLrdPvIIrVesee~~~seVrQ-------vVvqVpe~kn---~s-------L------- 247 (2355)
++|+||||.++...-. +...-..+..+....... .++.+ ++..++.... .. +
T Consensus 262 ~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rp--vPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~ 339 (1041)
T COG4581 262 RFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRP--VPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKV 339 (1041)
T ss_pred cEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCC--CCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhc
Confidence 9999999998543322 221112232222221111 11111 1111111110 00 0
Q ss_pred ----------------------hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc-----------------
Q psy8497 248 ----------------------RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA----------------- 288 (2355)
Q Consensus 248 ----------------------t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr----------------- 288 (2355)
........++..+.....-.+|+|+-+++.|+.++..|...
T Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~ 419 (1041)
T COG4581 340 RETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIID 419 (1041)
T ss_pred cccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 00000022444444445568999999999998887777621
Q ss_pred -----------CC-------------ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----e
Q psy8497 289 -----------NF-------------GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----L 340 (2355)
Q Consensus 289 -----------GI-------------KVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----y 340 (2355)
++ .++++|++|-+..+..+...|..|-++||++|.+++.|||+|+-++|+- +
T Consensus 420 ~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~ 499 (1041)
T COG4581 420 HAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKF 499 (1041)
T ss_pred HHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEe
Confidence 11 3568999999999999999999999999999999999999998777761 2
Q ss_pred c----CCCCHhHHHHHhhccCCCCCc--cEEEEEE
Q psy8497 341 E----IPHDAATYLHRMGRAGRYGTR--GLVITIV 369 (2355)
Q Consensus 341 D----SP~SPqSYIQRIGRAGRiGQk--GkVIVLV 369 (2355)
| ...++.+|+|+.|||||.|.+ |.||++.
T Consensus 500 dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~ 534 (1041)
T COG4581 500 DGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIE 534 (1041)
T ss_pred cCCceeecChhHHHHhhhhhccccccccceEEEec
Confidence 2 123799999999999999955 5555553
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=279.82 Aligned_cols=308 Identities=18% Similarity=0.212 Sum_probs=203.1
Q ss_pred cHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH----HHHHHHHHHHHHHhcccCCc
Q psy8497 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR----EIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 45 RPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR----ALAqQ~anwLREFgk~APgL 120 (2355)
..+..+.+..+..++-+||+++||||||.+ +..++..+. ....+.+++.-|.+ +|+.|+.+.+..-. +-
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq-lPq~lle~g--~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l----G~ 148 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ-LPKICLELG--RGVKGLIGHTQPRRLAARTVANRIAEELETEL----GG 148 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHcC--CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh----cc
Confidence 444455667766677788999999999963 322332221 12223455556855 56666666655422 11
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc-hhcccChHHH-HHHHHHhCCCCceEEEE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD-KLINTGFVED-ITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH-RLkN~GF~Sr-LeeILs~LppnrQILLL 198 (2355)
.|.+-+.-. .......+|+|+|+++|+..+....+ +..+++||||||| ++++.+|.-. +..++.. .+..|+|+|
T Consensus 149 ~VGY~vrf~--~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvILm 224 (1294)
T PRK11131 149 CVGYKVRFN--DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVIIT 224 (1294)
T ss_pred eeceeecCc--cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEEe
Confidence 222211111 11123478999999999988876544 8999999999999 6788776542 3333322 246899999
Q ss_pred EeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHH---HhcCCCCeEEEEEccc
Q psy8497 199 SATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL---LSQTPFNQCVIFSNYQ 275 (2355)
Q Consensus 199 SATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqL---Lerl~kgRVLVFSQTR 275 (2355)
|||+... .+...+...+ ++.+..... .+...+..+.... ..........++.. +.....+.+|||+++.
T Consensus 225 SATid~e--~fs~~F~~ap-vI~V~Gr~~---pVei~y~p~~~~~--~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~ 296 (1294)
T PRK11131 225 SATIDPE--RFSRHFNNAP-IIEVSGRTY---PVEVRYRPIVEEA--DDTERDQLQAIFDAVDELGREGPGDILIFMSGE 296 (1294)
T ss_pred eCCCCHH--HHHHHcCCCC-EEEEcCccc---cceEEEeeccccc--chhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Confidence 9999743 3333333334 344443222 2333333322110 00001112222222 2234457899999999
Q ss_pred ccHHHHHHHHHhcCCc---cEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEec-----------
Q psy8497 276 LRPEVICENLANANFG---AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLE----------- 341 (2355)
Q Consensus 276 KmAEiLADyLrErGIK---VarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyD----------- 341 (2355)
..++.+++.|...++. +..+||+|++.+|..+++. .|..+|||||++++.|||||++++||.++
T Consensus 297 ~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~ 374 (1294)
T PRK11131 297 REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRT 374 (1294)
T ss_pred HHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccccc
Confidence 9999999999987764 6789999999999999876 47789999999999999999999999875
Q ss_pred ----CC---CCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 342 ----IP---HDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 342 ----SP---~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.| .|..+++||+|||||. .+|.||.+++..+.
T Consensus 375 ~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 375 KVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred CcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 23 3568999999999997 78999999986543
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=272.76 Aligned_cols=321 Identities=20% Similarity=0.215 Sum_probs=253.4
Q ss_pred CcccCCcHHHHHHHH-HCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEE
Q psy8497 23 ENDVLIEKPIRQGLQ-ENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTII 95 (2355)
Q Consensus 23 SFEeLlLkpLLK~Lq-a~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLI 95 (2355)
.|..-...++...+. .++| .-++-|..||..+.+. .+=+||+..|.|||.+++=+++..+. .+++|.|
T Consensus 574 G~af~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~----~GKQVAv 648 (1139)
T COG1197 574 GFAFPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM----DGKQVAV 648 (1139)
T ss_pred CCCCCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc----CCCeEEE
Confidence 333333444444444 3666 8899999999998852 36799999999999999999988876 4799999
Q ss_pred EcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEe
Q psy8497 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIM 167 (2355)
Q Consensus 96 LVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIV 167 (2355)
||||.-|++|.++.|++-+..+ +++|.++.--..... ....++|||+|.--| ...+.+.++++|||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlII 722 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLII 722 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEE
Confidence 9999999999999999987777 788877765443322 123389999996433 34556888999999
Q ss_pred cccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 168 DEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
||-|+ |+..-.+-++.+....-+|-|||||.+..+.+...-+++--+|..+.... ..++-++......
T Consensus 723 DEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R--~pV~T~V~~~d~~----- 790 (1139)
T COG1197 723 DEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR--LPVKTFVSEYDDL----- 790 (1139)
T ss_pred echhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC--cceEEEEecCChH-----
Confidence 99998 55666777888888999999999999998888777666655555443322 2233333222211
Q ss_pred hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q psy8497 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325 (2355)
Q Consensus 248 t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL 325 (2355)
...++++.-+.+ +++|-...+.++.++.++..|++. ..++.+.||.|+..+-..++..|.+|+++|||||.++
T Consensus 791 ---~ireAI~REl~R--gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTII 865 (1139)
T COG1197 791 ---LIREAILRELLR--GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTII 865 (1139)
T ss_pred ---HHHHHHHHHHhc--CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeee
Confidence 233445554443 479999999999999999999986 4578999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 326 ARGIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+.|||||+++|+|+-+++. -..++-|..||+||..+.+.+++++..
T Consensus 866 EtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 866 ETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred ecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 9999999999999999986 889999999999999999999999863
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=247.45 Aligned_cols=323 Identities=19% Similarity=0.232 Sum_probs=245.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+-+..++|.|.++|+..+.+.+++|..|||.||++||.+|+|-. .+.+|||||+..|+..+.-.++.++..+
T Consensus 90 f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-------dg~alvi~plislmedqil~lkqlgi~a- 161 (695)
T KOG0353|consen 90 FHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-------DGFALVICPLISLMEDQILQLKQLGIDA- 161 (695)
T ss_pred hhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-------CCceEeechhHHHHHHHHHHHHHhCcch-
Confidence 56678999999999999999999999999999999999998743 6779999999999998888888885433
Q ss_pred CcEEEEEECCcccc----------CCCCCCcEEEECHHHHHHHH---H--hhcccCcCceEEEecccchhcccCh--HH-
Q psy8497 119 NLHVDYFIGGTQVE----------RPKRPVQIVVGSPGRIKQMI---K--LKYLNMDSVRLFIMDEADKLINTGF--VE- 180 (2355)
Q Consensus 119 gLrVVvytGGkq~r----------kqirq~DILVTTPErLLDLL---d--rr~LdLSkIdLLIVDEAHRLkN~GF--~S- 180 (2355)
..+......+ .....+.+|+.|||.+.... . ...+....+.+|.|||+|....|+. ..
T Consensus 162 ----s~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~d 237 (695)
T KOG0353|consen 162 ----SMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPD 237 (695)
T ss_pred ----hhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcc
Confidence 3333322211 11223789999999875321 1 1345567788999999999998873 22
Q ss_pred -HHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHH
Q psy8497 181 -DITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL 259 (2355)
Q Consensus 181 -rLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqL 259 (2355)
....++...-+...+|+||||....++......+.-...+... .......+...+.+-|... ..-.+.+..+
T Consensus 238 y~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~nl~yev~qkp~n~------dd~~edi~k~ 310 (695)
T KOG0353|consen 238 YKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRPNLKYEVRQKPGNE------DDCIEDIAKL 310 (695)
T ss_pred hHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCCCceeEeeeCCCCh------HHHHHHHHHH
Confidence 2334555555688999999999988887777655422111111 1122233444444433331 1233445555
Q ss_pred HhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEE
Q psy8497 260 LSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI 338 (2355)
Q Consensus 260 Lerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI 338 (2355)
+... .+..-||||.+++.++.++..|+..|+.+..+|..|.+++|.-+-+.|..|++.|+|+|-+.++|||-|+|++||
T Consensus 311 i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvi 390 (695)
T KOG0353|consen 311 IKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVI 390 (695)
T ss_pred hccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEE
Confidence 5433 345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHhHHHH-------------------------------------------HhhccCCCCCccEEEEEEcccCHH
Q psy8497 339 NLEIPHDAATYLH-------------------------------------------RMGRAGRYGTRGLVITIVSAESLV 375 (2355)
Q Consensus 339 IyDSP~SPqSYIQ-------------------------------------------RIGRAGRiGQkGkVIVLVSsdDVE 375 (2355)
+..+|.+...|.| -.|||||.+.+..+|+|+.-.+..
T Consensus 391 hhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 391 HHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred ecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHH
Confidence 9999999999999 679999999999999999776665
Q ss_pred HHHHH
Q psy8497 376 KFHSL 380 (2355)
Q Consensus 376 eIEsL 380 (2355)
.+..+
T Consensus 471 k~ssm 475 (695)
T KOG0353|consen 471 KISSM 475 (695)
T ss_pred hHHHH
Confidence 55544
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-25 Score=258.75 Aligned_cols=285 Identities=27% Similarity=0.419 Sum_probs=224.2
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccc--CCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEE
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHV--KNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLF 165 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~A--PgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLL 165 (2355)
.+|||-|.++|++|..+.+++|.... |.++..++.|+...+. .....+|+|+||.+|.+.+....+.+..+.++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 56999999999999999999886554 5566667777765543 23448999999999999999988899999999
Q ss_pred EecccchhcccChHHHHHHHHHhCCC------CceEEEEEeccCh-hHHHHHHHhccCCeeeccCCCccccccceEEEEe
Q psy8497 166 IMDEADKLINTGFVEDITWIYSQLPP------MKQMLVVSATYSH-DNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL 238 (2355)
Q Consensus 166 IVDEAHRLkN~GF~SrLeeILs~Lpp------nrQILLLSATLS~-EILElLkKfLrdPvIIrVesee~~~seVrQvVvq 238 (2355)
|+||++.|+..++...+..+...++. ..|+++.|||+.. ++.....+.|.-|..+....+......+..++..
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~l 447 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKL 447 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceee
Confidence 99999999998888888888877764 3589999999874 3334555677777777776666555555555544
Q ss_pred ccCCCCCcchhh----------------------hHH---------HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHh
Q psy8497 239 IPECKNPSLRYV----------------------DEE---------KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN 287 (2355)
Q Consensus 239 Vpe~kn~sLt~l----------------------sKk---------eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrE 287 (2355)
+....+...... ... +.-+..+......++||||.++..|+.|..+|.+
T Consensus 448 v~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~q 527 (725)
T KOG0349|consen 448 VCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQ 527 (725)
T ss_pred cCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHH
Confidence 432221111110 000 1122223344457999999999999999999998
Q ss_pred cC---CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE
Q psy8497 288 AN---FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364 (2355)
Q Consensus 288 rG---IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk 364 (2355)
+| +.+..+||+..+.||.+-|+.|+.+++++||||+++++||||..+..||++.+|-...+|++||||+||..+-|.
T Consensus 528 kgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermgl 607 (725)
T KOG0349|consen 528 KGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGL 607 (725)
T ss_pred cCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcce
Confidence 75 689999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEEcccCHHH
Q psy8497 365 VITIVSAESLVK 376 (2355)
Q Consensus 365 VIVLVSsdDVEe 376 (2355)
+|.++.......
T Consensus 608 aislvat~~ekv 619 (725)
T KOG0349|consen 608 AISLVATVPEKV 619 (725)
T ss_pred eEEEeeccchhe
Confidence 998886544433
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=267.08 Aligned_cols=311 Identities=16% Similarity=0.183 Sum_probs=200.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc-CCc
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNL 120 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A-PgL 120 (2355)
..|+|+|..+.........+||.+|||+|||.++++++...+.. ....+++|+.||++++.|+++.+.++.... +..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~--~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ--GLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47999999886554445568999999999999988776654432 335689999999999999999988754322 234
Q ss_pred EEEEEECCccccC----------------------------CCC---CCcEEEECHHHHHHHHH-hhcccCcCc----eE
Q psy8497 121 HVDYFIGGTQVER----------------------------PKR---PVQIVVGSPGRIKQMIK-LKYLNMDSV----RL 164 (2355)
Q Consensus 121 rVVvytGGkq~rk----------------------------qir---q~DILVTTPErLLDLLd-rr~LdLSkI----dL 164 (2355)
.+.+.+|...... ..+ ..+|+|||.+.++.... .+...++.+ .+
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 5666666542110 001 16899999998763332 211112222 38
Q ss_pred EEecccchhcccChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccc------cceE---
Q psy8497 165 FIMDEADKLINTGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLL------GVKQ--- 234 (2355)
Q Consensus 165 LIVDEAHRLkN~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~s------eVrQ--- 234 (2355)
|||||+|.+- ......+..++..+ .....+|+||||++....+.+...+.....+... ...+.. ....
T Consensus 443 vIiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~-~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 443 LIVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELS-SAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred EEEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccc-cccccccccccccceeeec
Confidence 9999999763 33344555555543 2356799999999977765554322211000000 000000 0000
Q ss_pred ----------EEEeccCCC-CCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC---CccEEeeCCCC
Q psy8497 235 ----------LVALIPECK-NPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN---FGAEYLSGAQD 300 (2355)
Q Consensus 235 ----------vVvqVpe~k-n~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG---IKVarLHGgMS 300 (2355)
..+.+.... ............+...+. ..+++||||++++.++.+++.|.+.+ ..+..+||.+.
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~--~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN--AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 000000000 000000111222333222 34689999999999999999999765 67999999999
Q ss_pred HHHH----HHHHHHH-hCCC---ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCC
Q psy8497 301 QKAR----LASLDSF-KRGK---VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361 (2355)
Q Consensus 301 qEER----qeILErF-RSGE---IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQ 361 (2355)
..+| .++++.| +++. ..|||+|++++.|||| ++++||....| ...++||+||++|.+.
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999 4577888 5555 4799999999999999 58999987777 7899999999999764
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=265.10 Aligned_cols=329 Identities=17% Similarity=0.214 Sum_probs=219.9
Q ss_pred CCcHHHHHHHHHHHcC----------CcEEEEccCCchHHHHHHHHHHHHHHhcCC---CCCeEEEEcccHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLNG----------YDAIVQSKSGTGKSIVFVVAALNKLIKLPV---QQPQTIILAPTREIAVQITDV 109 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG----------RNVILAAPTGSGKTLVALIAILerL~ekr~---qggRVLILVPTRALAqQ~anw 109 (2355)
.|+|+|.+++.+|... ..||++..||+|||+..+..+..+|...+. ...+.|||+|...| .+|
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv----~nW 313 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLV----NNW 313 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHH----HHH
Confidence 7899999999999752 249999999999999888777777765332 11678999998655 555
Q ss_pred HHHHhcccC--CcEEEEEECCccccCC-----------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc
Q psy8497 110 VRSVGAHVK--NLHVDYFIGGTQVERP-----------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 110 LREFgk~AP--gLrVVvytGGkq~rkq-----------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~ 176 (2355)
-++|..|.. .+....+++....... .-..-|++.+|+.+..... .+....+++||+||+|++.+.
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch
Confidence 555555543 4666667776653111 1115699999999865553 344678899999999999987
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhcc--CC-------------------------------------
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV--DP------------------------------------- 217 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLr--dP------------------------------------- 217 (2355)
. ..+...+..+. ..+.|+||+||-++.+..+...+. .|
T Consensus 392 ~--s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~ 468 (776)
T KOG0390|consen 392 D--SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQ 468 (776)
T ss_pred h--hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHH
Confidence 6 77777787775 445577899988765543332220 00
Q ss_pred --------eeeccCC--CccccccceEEEEeccC----------------------------------CCCCc-------
Q psy8497 218 --------LLIRPED--ATRPLLGVKQLVALIPE----------------------------------CKNPS------- 246 (2355)
Q Consensus 218 --------vIIrVes--ee~~~seVrQvVvqVpe----------------------------------~kn~s------- 246 (2355)
++++... .....+.....++.+.. +..+.
T Consensus 469 eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~ 548 (776)
T KOG0390|consen 469 ELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEK 548 (776)
T ss_pred HHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccc
Confidence 1111110 00000111111111000 00000
Q ss_pred -------------------------chhhhHHHHHHHHHhcC---CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCC
Q psy8497 247 -------------------------LRYVDEEKKLVQLLSQT---PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGA 298 (2355)
Q Consensus 247 -------------------------Lt~lsKkeaLLqLLerl---~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGg 298 (2355)
.....++..|..++... ...++.+.++.+..++.+...+..+|+.+.+|||.
T Consensus 549 ~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 549 TEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGK 628 (776)
T ss_pred ccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCC
Confidence 00012223344443222 22345555566667777777777889999999999
Q ss_pred CCHHHHHHHHHHHhCCC---ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHH
Q psy8497 299 QDQKARLASLDSFKRGK---VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV 375 (2355)
Q Consensus 299 MSqEERqeILErFRSGE---IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVE 375 (2355)
|+..+|+.+++.|++.. +-+|++|.|+++||||-.++-||+||++|||....|+|+||.|.||+..|++|....+..
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 99999999999999743 447889999999999999999999999999999999999999999998888877554444
Q ss_pred HHHHH
Q psy8497 376 KFHSL 380 (2355)
Q Consensus 376 eIEsL 380 (2355)
..+.+
T Consensus 709 iEEk~ 713 (776)
T KOG0390|consen 709 IEEKI 713 (776)
T ss_pred chHHH
Confidence 44444
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-24 Score=224.64 Aligned_cols=196 Identities=38% Similarity=0.639 Sum_probs=171.4
Q ss_pred cccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-CCCCeEEEEcccHH
Q psy8497 24 NDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-VQQPQTIILAPTRE 101 (2355)
Q Consensus 24 FEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-~qggRVLILVPTRA 101 (2355)
|.++.+++ +.+.+...|+..|+++|.++++.+.+++++|+++|||+|||++++++++..+.... ..++++|||+|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 66778887 99999999999999999999999999999999999999999999999998887532 35678999999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 102 IAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 102 LAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
|+.|+...++.+.... ++.+..+.|+..... ....++|+|+||+.|..++......+..+++|||||+|.+.+.+
T Consensus 81 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC
Confidence 9999999999987664 788888888765432 11357899999999999888777778899999999999998888
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeee
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLI 220 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvII 220 (2355)
+...+..++..++...|++++|||++......+..++.+++.+
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8899999999998899999999999988888888888877765
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=269.36 Aligned_cols=312 Identities=17% Similarity=0.201 Sum_probs=198.9
Q ss_pred CCCcHHHHHHHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 42 VKESPIQMAAFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
..|++||.+|+..+.. .+.+||+++||+|||++++..+. .|.. .....+||||||+.+|+.|+.+.|..+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~-~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMY-RLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-HHHh-cCccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 3699999999988763 35799999999999988664444 4442 134568999999999999999999887422
Q ss_pred cCCcEEEEEECCc--cccCCCCCCcEEEECHHHHHHHHHh-----hcccCcCceEEEecccchhccc-------------
Q psy8497 117 VKNLHVDYFIGGT--QVERPKRPVQIVVGSPGRIKQMIKL-----KYLNMDSVRLFIMDEADKLINT------------- 176 (2355)
Q Consensus 117 APgLrVVvytGGk--q~rkqirq~DILVTTPErLLDLLdr-----r~LdLSkIdLLIVDEAHRLkN~------------- 176 (2355)
. ...+..+++.. ..........|+|+|+++|...+.. ..+.+..+++|||||||+....
T Consensus 490 ~-~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 490 G-DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred c-ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccch
Confidence 1 11111111111 0011122368999999998766432 1235678899999999995310
Q ss_pred --ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh--------------cc---CCeeeccCC--Ccccccc---c
Q psy8497 177 --GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY--------------MV---DPLLIRPED--ATRPLLG---V 232 (2355)
Q Consensus 177 --GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf--------------Lr---dPvIIrVes--ee~~~se---V 232 (2355)
.++..+..++..+. ..+|+|||||.......+... +. .|+.+.... ....... +
T Consensus 569 ~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 569 QLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 12466777777553 467999999975443322211 11 011111000 0000000 0
Q ss_pred eEEE---Eecc-CCCCCcchhh---------------hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc-----
Q psy8497 233 KQLV---ALIP-ECKNPSLRYV---------------DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA----- 288 (2355)
Q Consensus 233 rQvV---vqVp-e~kn~sLt~l---------------sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr----- 288 (2355)
..+. ..+. ........+. .....|...+.....+++||||.++..++.+.+.|.+.
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 0000 0000 0000000000 00122333333333479999999999999999888763
Q ss_pred -CC---ccEEeeCCCCHHHHHHHHHHHhCCCc-cEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCC
Q psy8497 289 -NF---GAEYLSGAQDQKARLASLDSFKRGKV-RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360 (2355)
Q Consensus 289 -GI---KVarLHGgMSqEERqeILErFRSGEI-dVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG 360 (2355)
++ .+..++|.++ ++..+++.|+++.. .|||+++++.+|+|+|.+.+||++.++.|...|+||+||+.|.-
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 3556888875 56789999999887 68999999999999999999999999999999999999999964
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=269.59 Aligned_cols=309 Identities=16% Similarity=0.170 Sum_probs=206.7
Q ss_pred HHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECC
Q psy8497 49 MAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128 (2355)
Q Consensus 49 eEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGG 128 (2355)
.+.+..|..+.-+||+++||+|||.+ +..++... .....+.+++.-|.+..+..+...+.+......+-.|++-+..
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq-lPq~lle~--~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~ 149 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ-LPKICLEL--GRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF 149 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH-HHHHHHHc--CCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC
Confidence 45666666667789999999999964 32332221 1123346777779998888888777765433223333322221
Q ss_pred ccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc-hhcccChHHH-HHHHHHhCCCCceEEEEEeccChhH
Q psy8497 129 TQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD-KLINTGFVED-ITWIYSQLPPMKQMLVVSATYSHDN 206 (2355)
Q Consensus 129 kq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH-RLkN~GF~Sr-LeeILs~LppnrQILLLSATLS~EI 206 (2355)
.. .......|+|+|+++|+..+.... .+..+++|||||+| +.++.++.-. +..++.. .+..|+|+||||+...
T Consensus 150 ~~--~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSATld~~- 224 (1283)
T TIGR01967 150 HD--QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATIDPE- 224 (1283)
T ss_pred Cc--ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCCcCHH-
Confidence 11 122347899999999998887654 37899999999999 6888776543 4445443 3578999999999742
Q ss_pred HHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCC-cchhhhH-HHHHHHHHhcCCCCeEEEEEcccccHHHHHHH
Q psy8497 207 LATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP-SLRYVDE-EKKLVQLLSQTPFNQCVIFSNYQLRPEVICEN 284 (2355)
Q Consensus 207 LElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~-sLt~lsK-keaLLqLLerl~kgRVLVFSQTRKmAEiLADy 284 (2355)
. +..++....++.+..... .+...+..+...... ....... ...+..++. ...+.+|||+++...++.+++.
T Consensus 225 -~-fa~~F~~apvI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~ 298 (1283)
T TIGR01967 225 -R-FSRHFNNAPIIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEI 298 (1283)
T ss_pred -H-HHHHhcCCCEEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHH
Confidence 3 333443332344433222 223333222111000 0011111 122333332 2447999999999999999999
Q ss_pred HHhcC---CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC------------------
Q psy8497 285 LANAN---FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP------------------ 343 (2355)
Q Consensus 285 LrErG---IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP------------------ 343 (2355)
|...+ +.+..|||.|+..+|.++++.+ +..+|||||++++.||+||++++||.++.+
T Consensus 299 L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ 376 (1283)
T TIGR01967 299 LRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEP 376 (1283)
T ss_pred HHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCcc
Confidence 99864 4588899999999999986654 346899999999999999999999988743
Q ss_pred CCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 344 HDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 344 ~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.|..+++||+|||||.+ +|.||.+++..+.
T Consensus 377 ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 377 ISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36679999999999986 9999999976544
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=250.31 Aligned_cols=328 Identities=17% Similarity=0.192 Sum_probs=224.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+--.|.+|+ |..++||+|||++++++++..+.. +..++||+|++.||.|..+|+..+..++
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~----G~~V~VvTpn~yLA~qd~e~m~~l~~~l- 150 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS----GRGVHIVTVNDYLAKRDSQWMKPIYEFL- 150 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc----CCCEEEEcCCHHHHHHHHHHHHHHhccc-
Confidence 565 78888988877776665 999999999999999999866552 4569999999999999999999999888
Q ss_pred CcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhhc-ccC-----cCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLKY-LNM-----DSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr~-LdL-----SkIdLLIVDEAHRLk-N~------------ 176 (2355)
++.+.+++|+..... ....++|+|+||..| .+++.... +.+ ..+.++||||||.++ +.
T Consensus 151 GLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred CceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 899999999864332 222489999999999 88887652 223 588999999999865 21
Q ss_pred ---ChHHHHHHHHHhCCCC--------------ceEEEEEeccCh----------------------------hHHHHHH
Q psy8497 177 ---GFVEDITWIYSQLPPM--------------KQMLVVSATYSH----------------------------DNLATLQ 211 (2355)
Q Consensus 177 ---GF~SrLeeILs~Lppn--------------rQILLLSATLS~----------------------------EILElLk 211 (2355)
..+..+..++..+... .+.+.||-.-.. .+...+.
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~ 310 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALK 310 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHH
Confidence 1233444444443221 122333331000 0011111
Q ss_pred H--hcc-C-Ceee------ccCCC-cc----------------------------c------------------------
Q psy8497 212 K--YMV-D-PLLI------RPEDA-TR----------------------------P------------------------ 228 (2355)
Q Consensus 212 K--fLr-d-PvII------rVese-e~----------------------------~------------------------ 228 (2355)
. ++. + .+++ .++.. .. .
T Consensus 311 A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~ 390 (896)
T PRK13104 311 AHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTAD 390 (896)
T ss_pred HHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCCh
Confidence 0 010 0 0111 00000 00 0
Q ss_pred --ccc----ceEEEEeccCCC---------CCcchhhhHHHHHHHHHh--cCCCCeEEEEEcccccHHHHHHHHHhcCCc
Q psy8497 229 --LLG----VKQLVALIPECK---------NPSLRYVDEEKKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLANANFG 291 (2355)
Q Consensus 229 --~se----VrQvVvqVpe~k---------n~sLt~lsKkeaLLqLLe--rl~kgRVLVFSQTRKmAEiLADyLrErGIK 291 (2355)
... ...-+..+|..+ ..+.+...+..++.+.+. ...+.+|||||.++..++.|...|...|+.
T Consensus 391 te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~ 470 (896)
T PRK13104 391 TEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIK 470 (896)
T ss_pred hHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 000 011122222211 111122233344444332 224569999999999999999999999999
Q ss_pred cEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc-------------------------------------
Q psy8497 292 AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV------------------------------------- 334 (2355)
Q Consensus 292 VarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV------------------------------------- 334 (2355)
+..||+.+.+.++..+.+.|+.| .|+|||+++++|+||.=-
T Consensus 471 h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 548 (896)
T PRK13104 471 HQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAG 548 (896)
T ss_pred eEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcC
Confidence 99999999999999999999999 499999999999997521
Q ss_pred -cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 335 -DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 335 -DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
=+||....+-|..-+.|..|||||.|.+|....|++-++.-+
T Consensus 549 GL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 549 GLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred CCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 258888888899999999999999999999999997665544
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=254.19 Aligned_cols=341 Identities=17% Similarity=0.252 Sum_probs=243.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHH--HHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAF--PYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDV 109 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEAL--n~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anw 109 (2355)
..-.....|+..++.||.+++ +.+++++++|..+||+.|||+++.+.++..+.. ....+|.+.|-.+.++.....
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~---~rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC---RRRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH---HhhceeEecceeehhHHHHhh
Confidence 555666689999999999998 567788999999999999999999999887763 356689999999998888888
Q ss_pred HHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccChHHHHHHHHH
Q psy8497 110 VRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187 (2355)
Q Consensus 110 LREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs 187 (2355)
+..|...+ ++.|-.|.|...-........|.|+|.|+-..++.. ..-.+..+++|||||.|.+.+.+.+..++.++.
T Consensus 289 l~~~~~~~-G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~ 367 (1008)
T KOG0950|consen 289 LSPFSIDL-GFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLA 367 (1008)
T ss_pred hhhhcccc-CCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHH
Confidence 88888777 899999998877666666689999999975433322 112356678999999999999888777777766
Q ss_pred hC-----CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCC-cchhhhHH--------
Q psy8497 188 QL-----PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP-SLRYVDEE-------- 253 (2355)
Q Consensus 188 ~L-----ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~-sLt~lsKk-------- 253 (2355)
.+ ....|+|+||||+++ ...+..++...+....... ..+...+..-...... ........
T Consensus 368 k~~y~~~~~~~~iIGMSATi~N--~~lL~~~L~A~~y~t~fRP----v~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~ 441 (1008)
T KOG0950|consen 368 KILYENLETSVQIIGMSATIPN--NSLLQDWLDAFVYTTRFRP----VPLKEYIKPGSLIYESSRNKVLREIANLYSSNL 441 (1008)
T ss_pred HHHHhccccceeEeeeecccCC--hHHHHHHhhhhheecccCc----ccchhccCCCcccccchhhHHHHHhhhhhhhhc
Confidence 53 344789999999984 3455555543222211110 0111111000000000 00000000
Q ss_pred -----HHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhc--------------------------------------
Q psy8497 254 -----KKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANA-------------------------------------- 288 (2355)
Q Consensus 254 -----eaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrEr-------------------------------------- 288 (2355)
+.+..+.... ...++||||++++.|+.++..+...
T Consensus 442 g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti 521 (1008)
T KOG0950|consen 442 GDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTI 521 (1008)
T ss_pred ccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheec
Confidence 0111111111 1247999999999999888665431
Q ss_pred CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEe---cC-CCCHhHHHHHhhccCCCC--Cc
Q psy8497 289 NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINL---EI-PHDAATYLHRMGRAGRYG--TR 362 (2355)
Q Consensus 289 GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIy---DS-P~SPqSYIQRIGRAGRiG--Qk 362 (2355)
.++++++|.+++.++|..+...|++|-+.||+||+++..|+|+|+..++|-. .. ..+.-+|.||+|||||.| ..
T Consensus 522 ~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 522 PYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred cccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccC
Confidence 1578999999999999999999999999999999999999999999877732 11 226789999999999987 55
Q ss_pred cEEEEEEcccCHHHHHHHHH
Q psy8497 363 GLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 363 GkVIVLVSsdDVEeIEsLrR 382 (2355)
|..|+++...+......+..
T Consensus 602 GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 602 GDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred cceEEEeeccchhHHHHHHh
Confidence 77899998877766655543
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=241.21 Aligned_cols=317 Identities=15% Similarity=0.202 Sum_probs=212.2
Q ss_pred CCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC
Q psy8497 41 FVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg 119 (2355)
+..|.|||.+++.+.+. |..+||+++||+|||++++ +|..+.. ..++.|||||.+.+ ..|.+++..|+|.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yyr----aEwplliVcPAsvr----ftWa~al~r~lps 266 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYYR----AEWPLLIVCPASVR----FTWAKALNRFLPS 266 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHHh----hcCcEEEEecHHHh----HHHHHHHHHhccc
Confidence 44789999999999875 5679999999999997766 4444444 35779999999877 6666666666665
Q ss_pred cEEE-EEECCcccc-CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 120 LHVD-YFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 120 LrVV-vytGGkq~r-kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
+..+ ++.+....- ..-...-|.|.+|+.|..+. ..+.-..|.+||+||+|.|++.. ......+...+....++|+
T Consensus 267 ~~pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 267 IHPIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred ccceEEEecccCCccccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEE
Confidence 5442 222222211 11122569999999875433 34445668999999999998654 3445556666666778999
Q ss_pred EEeccChh----HH---------------HHHHHhccCC---eeeccCCC-----------------------ccccccc
Q psy8497 198 VSATYSHD----NL---------------ATLQKYMVDP---LLIRPEDA-----------------------TRPLLGV 232 (2355)
Q Consensus 198 LSATLS~E----IL---------------ElLkKfLrdP---vIIrVese-----------------------e~~~seV 232 (2355)
||+||.-. +. ++..+|+... +.+..... ....+..
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK 423 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK 423 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 99997521 11 1111222110 00000000 0001111
Q ss_pred eEEEEe-ccCCCCCcchh-----------------------------hhHHHHHHHHH------hcCCCCeEEEEEcccc
Q psy8497 233 KQLVAL-IPECKNPSLRY-----------------------------VDEEKKLVQLL------SQTPFNQCVIFSNYQL 276 (2355)
Q Consensus 233 rQvVvq-Vpe~kn~sLt~-----------------------------lsKkeaLLqLL------erl~kgRVLVFSQTRK 276 (2355)
++.+.. .....+..... ..+.....+.+ ...+..+.|||+....
T Consensus 424 rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~ 503 (689)
T KOG1000|consen 424 RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQI 503 (689)
T ss_pred ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHH
Confidence 222222 21111100000 00111122222 2234469999999999
Q ss_pred cHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC-CCccE-EEEecccccccCCCCccEEEEecCCCCHhHHHHHhh
Q psy8497 277 RPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR-GKVRI-LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354 (2355)
Q Consensus 277 mAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS-GEIdV-LVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIG 354 (2355)
+++.+..++.++++...+|+|.++..+|..+.+.|+. .++.| |++..++++||++.+++.|++...+|||--++|+-.
T Consensus 504 vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAED 583 (689)
T KOG1000|consen 504 VLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAED 583 (689)
T ss_pred HHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechh
Confidence 9999999999999999999999999999999999995 45665 778899999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEE
Q psy8497 355 RAGRYGTRGLVITIV 369 (2355)
Q Consensus 355 RAGRiGQkGkVIVLV 369 (2355)
||||+||+..|.+++
T Consensus 584 RaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 584 RAHRIGQKSSVFVQY 598 (689)
T ss_pred hhhhccccceeeEEE
Confidence 999999887655544
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=245.21 Aligned_cols=327 Identities=17% Similarity=0.169 Sum_probs=227.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHH-HHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAAL-NKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAIL-erL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
+|+ .+++.|.-+.-.|.+|+ |..+.||+|||++++++++ ..|. +..+-||+|+..||.|..+|+..++..+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-----GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 566 88999999887776664 9999999999999999995 4543 4468899999999999999999999888
Q ss_pred CCcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhhc------ccCcCceEEEecccchhc-cc-----------
Q psy8497 118 KNLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLKY------LNMDSVRLFIMDEADKLI-NT----------- 176 (2355)
Q Consensus 118 PgLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr~------LdLSkIdLLIVDEAHRLk-N~----------- 176 (2355)
++.+.+++|+..... ....++|+++|+..| .+++.... +....+.++|||||+.++ +.
T Consensus 150 -Glsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 150 -GLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred -CCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 999999999754432 223489999999999 78887654 236788999999999865 21
Q ss_pred ----ChHHHHHHHHHhCCCC--------ceEEEEEeccC---------------------hhHHHHHH-Hh-c-cC-Cee
Q psy8497 177 ----GFVEDITWIYSQLPPM--------KQMLVVSATYS---------------------HDNLATLQ-KY-M-VD-PLL 219 (2355)
Q Consensus 177 ----GF~SrLeeILs~Lppn--------rQILLLSATLS---------------------~EILElLk-Kf-L-rd-PvI 219 (2355)
..+..+..+...+... .+.+.||..-. ..+...+. .+ + .+ .++
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 1344555555555321 22233333100 00011111 00 0 00 011
Q ss_pred e------ccCC-Cc----------------------------cc--------------------------ccc----ceE
Q psy8497 220 I------RPED-AT----------------------------RP--------------------------LLG----VKQ 234 (2355)
Q Consensus 220 I------rVes-ee----------------------------~~--------------------------~se----VrQ 234 (2355)
+ .+.. .. .. ... ...
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 0 0000 00 00 000 000
Q ss_pred EEEeccCCC---------CCcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 235 LVALIPECK---------NPSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 235 vVvqVpe~k---------n~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
-+..+|..+ ..+.....+...+...+.. ....+|||||.++..++.|...|...++.+..||+. +.+
T Consensus 389 ~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~e 466 (830)
T PRK12904 389 DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHE 466 (830)
T ss_pred CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHH
Confidence 111222111 1111223455666666643 455699999999999999999999999999999995 789
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCc--------------------------------------cEEEEecCCCC
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAANV--------------------------------------DLVINLEIPHD 345 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPaV--------------------------------------DTVIIyDSP~S 345 (2355)
|...+..|..+...|+|||+++++|+||+-- =+||....+-|
T Consensus 467 REa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhes 546 (830)
T PRK12904 467 REAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHES 546 (830)
T ss_pred HHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCch
Confidence 9999999999999999999999999998653 25888888999
Q ss_pred HhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 346 AATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
..-..|..|||||.|.+|.+..|++-++.-+
T Consensus 547 rRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 547 RRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred HHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 9999999999999999999999997765544
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=214.00 Aligned_cols=317 Identities=17% Similarity=0.160 Sum_probs=217.7
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|+++|+.+-+.+++ ..+.||.|-||+|||.+....+-..|. .+.++.|..|....+.+++..++..+.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~----~G~~vciASPRvDVclEl~~Rlk~aF~-- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN----QGGRVCIASPRVDVCLELYPRLKQAFS-- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh----cCCeEEEecCcccchHHHHHHHHHhhc--
Confidence 3899999998877764 578999999999999776555544443 689999999999999998988887653
Q ss_pred CCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
+..+.+++|+...... .++||+|...|+.+. ..+++|||||++...-..-......+-.......-+|+
T Consensus 170 -~~~I~~Lyg~S~~~fr---~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~Iy 238 (441)
T COG4098 170 -NCDIDLLYGDSDSYFR---APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIY 238 (441)
T ss_pred -cCCeeeEecCCchhcc---ccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhcccCceEE
Confidence 4678889988765433 568888877775443 34679999999976422212333344455566778999
Q ss_pred EEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCC--CCeEEEEEccc
Q psy8497 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTP--FNQCVIFSNYQ 275 (2355)
Q Consensus 198 LSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~--kgRVLVFSQTR 275 (2355)
||||++......+..--. ..+.+...-.....+.....++..... .+..-....+|...|+... ...+|||++++
T Consensus 239 lTATp~k~l~r~~~~g~~--~~~klp~RfH~~pLpvPkf~w~~~~~k-~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I 315 (441)
T COG4098 239 LTATPTKKLERKILKGNL--RILKLPARFHGKPLPVPKFVWIGNWNK-KLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEI 315 (441)
T ss_pred EecCChHHHHHHhhhCCe--eEeecchhhcCCCCCCCceEEeccHHH-HhhhccCCHHHHHHHHHHHhcCCcEEEEecch
Confidence 999999766554432111 112222111111111112222222110 0000001134555554332 35899999999
Q ss_pred ccHHHHHHHHHhc-C-CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC--CCHhHHHH
Q psy8497 276 LRPEVICENLANA-N-FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP--HDAATYLH 351 (2355)
Q Consensus 276 KmAEiLADyLrEr-G-IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP--~SPqSYIQ 351 (2355)
..++.++..|+.. . ..++.+|+. ...|.+.++.|++|++.+||+|.++++|+.+|.++++++-.-. ++...++|
T Consensus 316 ~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQ 393 (441)
T COG4098 316 ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQ 393 (441)
T ss_pred HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHH
Confidence 9999999999653 2 345677774 4678999999999999999999999999999999988866544 68999999
Q ss_pred HhhccCCCC--CccEEEEEEcccCHHHHHHH
Q psy8497 352 RMGRAGRYG--TRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 352 RIGRAGRiG--QkGkVIVLVSsdDVEeIEsL 380 (2355)
.+||+||.- -.|.++.|-...+..|....
T Consensus 394 IaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ 424 (441)
T COG4098 394 IAGRVGRSLERPTGDVLFFHYGKSKAMKQAR 424 (441)
T ss_pred HhhhccCCCcCCCCcEEEEeccchHHHHHHH
Confidence 999999954 45777777766666665544
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-21 Score=240.15 Aligned_cols=328 Identities=15% Similarity=0.186 Sum_probs=221.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|++.|.-+.=.|.+|+ |..+.||.|||+++.++++.... .+..+-||+|+..||.|-++|+..+..++
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al----~G~~v~vvT~neyLA~Rd~e~~~~~~~~L- 148 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL----TGKGVHVVTVNEYLSSRDATEMGELYRWL- 148 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH----cCCCeEEEeccHHHHHhhHHHHHHHHHhc-
Confidence 565 89999999887777766 99999999999999988876655 47789999999999999999999999988
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHHH-HHHHhh------cccCcCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRIK-QMIKLK------YLNMDSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErLL-DLLdrr------~LdLSkIdLLIVDEAHRLk-N~------------ 176 (2355)
++.|.++.++.... .....++|+++|...|- ++|+.. ....+.+.+.||||++.++ +.
T Consensus 149 Gl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~ 228 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAE 228 (796)
T ss_pred CCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCC
Confidence 89999998864332 23344899999987542 333321 1224677899999999754 21
Q ss_pred ---ChHHHHHHHHHhCCCC-------------------ceEEEEEec-------------c--------ChhHHHHHHH-
Q psy8497 177 ---GFVEDITWIYSQLPPM-------------------KQMLVVSAT-------------Y--------SHDNLATLQK- 212 (2355)
Q Consensus 177 ---GF~SrLeeILs~Lppn-------------------rQILLLSAT-------------L--------S~EILElLkK- 212 (2355)
..+..+..++..+... .+.+.+|.. + ...+...+..
T Consensus 229 ~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 308 (796)
T PRK12906 229 KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRAN 308 (796)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHH
Confidence 1233333333332211 112223220 0 0011111111
Q ss_pred h-cc-C-Ceee------ccCC-Cc----------------------------c----------------------cc---
Q psy8497 213 Y-MV-D-PLLI------RPED-AT----------------------------R----------------------PL--- 229 (2355)
Q Consensus 213 f-Lr-d-PvII------rVes-ee----------------------------~----------------------~~--- 229 (2355)
+ +. + .+++ .+.. .. . ..
T Consensus 309 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e 388 (796)
T PRK12906 309 YIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTE 388 (796)
T ss_pred HHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 0 10 0 0110 0000 00 0 00
Q ss_pred -cc----ceEEEEeccCCCC---------CcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccE
Q psy8497 230 -LG----VKQLVALIPECKN---------PSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAE 293 (2355)
Q Consensus 230 -se----VrQvVvqVpe~kn---------~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVa 293 (2355)
.. ...-+..+|..+. .+.....+...+...+.. ....+|||||.++..++.|...|...++.+.
T Consensus 389 ~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~ 468 (796)
T PRK12906 389 EEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHA 468 (796)
T ss_pred HHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCee
Confidence 00 0011122222110 111222344566666532 3557999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC---Ccc-----EEEEecCCCCHhHHHHHhhccCCCCCccEE
Q psy8497 294 YLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA---NVD-----LVINLEIPHDAATYLHRMGRAGRYGTRGLV 365 (2355)
Q Consensus 294 rLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP---aVD-----TVIIyDSP~SPqSYIQRIGRAGRiGQkGkV 365 (2355)
.||+.+...++..+...++.|. |+|||+++++|+||+ .|. +||.++.|.+...|.|++||+||.|.+|.+
T Consensus 469 ~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 469 VLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred EecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 9999999888888888877776 999999999999994 788 999999999999999999999999999999
Q ss_pred EEEEcccCHHH
Q psy8497 366 ITIVSAESLVK 376 (2355)
Q Consensus 366 IVLVSsdDVEe 376 (2355)
+.|++..+.-+
T Consensus 547 ~~~~sleD~l~ 557 (796)
T PRK12906 547 RFYLSLEDDLM 557 (796)
T ss_pred EEEEeccchHH
Confidence 99997765443
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=233.61 Aligned_cols=200 Identities=15% Similarity=0.197 Sum_probs=147.5
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEec--
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLE-- 341 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyD-- 341 (2355)
.+.++||||.++++++.|+++|...|+.+..+||+++..+|..++..|+.|.+.|||||+++++|+|+|.+++||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 346999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHH-----HhhccccccccCCCccchhhhhhhHHHHHHHH
Q psy8497 342 ---IPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLM-----GEINLDHAFNVGLVPDNLTGDQINWTQRVQTL 413 (2355)
Q Consensus 342 ---SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLr-----ReLKLKLaLe~eIVPkgLlKeqiDw~~~LERI 413 (2355)
.|.+...|+|++|||||. ..|.+++|+...+..+...+. +..+..+...+.++|+.+.+...+.......
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~~~~~~~~~~~~~~~- 598 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELK- 598 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCcccCcchHHHhhhhhh-
Confidence 678999999999999996 789999999988877655553 3455667778889999887776443221110
Q ss_pred HhCCccHHH-HHHHHHHHHHHHHHHhhcCCccCCCChhhhhcccccccCcccccc
Q psy8497 414 LAKPLDQAQ-EREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTD 467 (2355)
Q Consensus 414 LKnPLdeeq-ErEELEQLeeElkKIEneLkeLga~~kEaaeKe~~KeAakWrddd 467 (2355)
......... ....... ....++++.++.+...|.++.+.+.++.++.+++..
T Consensus 599 ~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i 651 (655)
T TIGR00631 599 EKEDAAKKKKKGEDLSD--LSKKELKKLIKQLEKEMKQAARNLEFEEAARLRDEI 651 (655)
T ss_pred cccchhhcccccccccc--CCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 000000000 0000000 011223334444555566666677777777766543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-20 Score=230.78 Aligned_cols=323 Identities=16% Similarity=0.125 Sum_probs=210.7
Q ss_pred CCcHHHHHHHHHHHcC---C-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVLNG---Y-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG---R-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
..+++|..++..+... . .++|.||||.|||++.++.++..+........++++|.|++++++++.+.+++++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~- 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF- 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-
Confidence 3489999999998863 3 6899999999999999988887776422357889999999999999999999875443
Q ss_pred CcEEEEEECCccccCCC------------------CCCcEEEECHHHHHHHHHhhc----ccCcCceEEEecccchhccc
Q psy8497 119 NLHVDYFIGGTQVERPK------------------RPVQIVVGSPGRIKQMIKLKY----LNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqi------------------rq~DILVTTPErLLDLLdrr~----LdLSkIdLLIVDEAHRLkN~ 176 (2355)
.+....+.+........ ....++++|+..+.......+ +......++|+||+|.+...
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 11111122222111000 014455555544333111111 11133458999999988766
Q ss_pred ChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccc-cccceEEEEeccCCCCCcchhhhHHH
Q psy8497 177 GFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRP-LLGVKQLVALIPECKNPSLRYVDEEK 254 (2355)
Q Consensus 177 GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~-~seVrQvVvqVpe~kn~sLt~lsKke 254 (2355)
.....+..++..+ .....+|+||||++......+...+.....+........ ............... ......
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-----~~~~~~ 428 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVE-----DGPQEE 428 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhh-----hhhhHh
Confidence 3333344444433 346789999999999888888876654433332211000 000000000000000 000001
Q ss_pred HHHHHH-hcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHh----CCCccEEEEeccccccc
Q psy8497 255 KLVQLL-SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFK----RGKVRILVTTDLAARGI 329 (2355)
Q Consensus 255 aLLqLL-erl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFR----SGEIdVLVSTSALGEGL 329 (2355)
.+.... ......+|||.|+|+..|..+...|+..+..+..+||.+...+|.+.++.+. .....|+|||++++.||
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 111111 1223469999999999999999999998888999999999999998888655 46788999999999999
Q ss_pred CCCCccEEEEecCCCCHhHHHHHhhccCCCC--CccEEEEEEcccCH
Q psy8497 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYG--TRGLVITIVSAESL 374 (2355)
Q Consensus 330 DLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG--QkGkVIVLVSsdDV 374 (2355)
|+ +.+++|-=-+ ...+++||+||++|.| ..+.++++......
T Consensus 509 Di-dfd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 509 DI-DFDVLITELA--PIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred cc-ccCeeeecCC--CHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 99 4777764434 4899999999999999 67778877755433
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=228.38 Aligned_cols=322 Identities=20% Similarity=0.208 Sum_probs=224.5
Q ss_pred CCCcHHHHHHHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
..|.+-|..++..|... ...++.+.||+|||.+|+-++-..|. .++.+|||||-.+|..|+.+.|+..+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~----~GkqvLvLVPEI~Ltpq~~~rf~~rFg-- 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA----QGKQVLVLVPEIALTPQLLARFKARFG-- 270 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH----cCCEEEEEeccccchHHHHHHHHHHhC--
Confidence 47899999999999865 45999999999999999988888877 478999999999999999999998763
Q ss_pred CCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc--cc---ChHHHHHH
Q psy8497 118 KNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI--NT---GFVEDITW 184 (2355)
Q Consensus 118 PgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk--N~---GF~SrLee 184 (2355)
..+.+++++-.... ......|||+|-..| ++.+.++++|||||-|--. .. .+..+-..
T Consensus 271 --~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 271 --AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred --CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 56777776654332 123488999998877 6678899999999999643 21 23344444
Q ss_pred HHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCc--chhhhHHHHHHHHHhc
Q psy8497 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPS--LRYVDEEKKLVQLLSQ 262 (2355)
Q Consensus 185 ILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~s--Lt~lsKkeaLLqLLer 262 (2355)
++......+++|+-||||+-+.......- ....+...............++-+....... .........+.+.|..
T Consensus 342 ~~Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ 419 (730)
T COG1198 342 VLRAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLER 419 (730)
T ss_pred HHHHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhc
Confidence 45554567899999999996554443211 1111111111111111111111111111111 1122333444444443
Q ss_pred CCCCeEEEEEccc------------------------------------------------------------ccHHHHH
Q psy8497 263 TPFNQCVIFSNYQ------------------------------------------------------------LRPEVIC 282 (2355)
Q Consensus 263 l~kgRVLVFSQTR------------------------------------------------------------KmAEiLA 282 (2355)
+.++|||.+.+ .-.+.++
T Consensus 420 --geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 420 --GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred --CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 35777777632 1235666
Q ss_pred HHHHhc--CCccEEeeCCCCH--HHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC------------CH
Q psy8497 283 ENLANA--NFGAEYLSGAQDQ--KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH------------DA 346 (2355)
Q Consensus 283 DyLrEr--GIKVarLHGgMSq--EERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~------------SP 346 (2355)
+.|... +.++.+++++... ..-..++..|..|+.+|||.|+++..|+|+|++++|.++|.|. ..
T Consensus 498 eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~f 577 (730)
T COG1198 498 EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTF 577 (730)
T ss_pred HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHH
Confidence 666654 4678889988764 3456789999999999999999999999999999999999884 45
Q ss_pred hHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 347 ATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 347 qSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+.+.|.+|||||.+.+|.|++.....+...+..++.
T Consensus 578 qll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 578 QLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 788999999999999999999998888777666644
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-20 Score=190.39 Aligned_cols=158 Identities=25% Similarity=0.467 Sum_probs=133.1
Q ss_pred cHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 45 RPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
+|+|.++++.+.+++++||.+|||+|||++++++++..+.+. ....+||++|+++|+.|+.+.+..++.. +.+++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccc-ccccccc
Confidence 689999999999999999999999999999999999888742 3458999999999999999999999876 4788888
Q ss_pred EECCcccc----C-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC--CceEEE
Q psy8497 125 FIGGTQVE----R-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP--MKQMLV 197 (2355)
Q Consensus 125 ytGGkq~r----k-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp--nrQILL 197 (2355)
++++.... . ....++|+|+||++|..++......+..+++|||||+|.+....+...+..++..+.. ..|+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~ 157 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIIL 157 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEE
T ss_pred ccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEE
Confidence 88876532 1 1134899999999999998875556677999999999999987777888888888733 589999
Q ss_pred EEeccChh
Q psy8497 198 VSATYSHD 205 (2355)
Q Consensus 198 LSATLS~E 205 (2355)
+|||+...
T Consensus 158 ~SAT~~~~ 165 (169)
T PF00270_consen 158 LSATLPSN 165 (169)
T ss_dssp EESSSTHH
T ss_pred EeeCCChh
Confidence 99999943
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=229.57 Aligned_cols=328 Identities=13% Similarity=0.160 Sum_probs=220.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+--.|.+|+ |..++||.|||++++++++.... .+..|+||+|+..||.|..+|+..+..++
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al----~g~~VhIvT~ndyLA~RD~e~m~~l~~~l- 150 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNAL----TGKGVHVITVNDYLARRDAENNRPLFEFL- 150 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHh----cCCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 565 78888888776666554 99999999999999999886555 35559999999999999999999999888
Q ss_pred CcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhh-ccc-----CcCceEEEecccchhcccC------------
Q psy8497 119 NLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLK-YLN-----MDSVRLFIMDEADKLINTG------------ 177 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr-~Ld-----LSkIdLLIVDEAHRLkN~G------------ 177 (2355)
++.|.++.++..... ..-.++|+++|+..| ++++... .+. ...+.++||||++.++-..
T Consensus 151 Glsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~ 230 (908)
T PRK13107 151 GLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAE 230 (908)
T ss_pred CCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCc
Confidence 999999988765432 223489999999998 7877765 222 2778899999999865211
Q ss_pred ----hHHHHHHHHHhCCC-------------------CceEEEEEec--------c--------------------ChhH
Q psy8497 178 ----FVEDITWIYSQLPP-------------------MKQMLVVSAT--------Y--------------------SHDN 206 (2355)
Q Consensus 178 ----F~SrLeeILs~Lpp-------------------nrQILLLSAT--------L--------------------S~EI 206 (2355)
.+..+..++..+.. ..+.+.||-. + ...+
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i 310 (908)
T PRK13107 231 DSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHV 310 (908)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHH
Confidence 22333333322211 1122333320 0 0000
Q ss_pred HHHHHH--hc-cC-Ceee------ccCC-Cccc-----------------------------------------------
Q psy8497 207 LATLQK--YM-VD-PLLI------RPED-ATRP----------------------------------------------- 228 (2355)
Q Consensus 207 LElLkK--fL-rd-PvII------rVes-ee~~----------------------------------------------- 228 (2355)
...+.. ++ .+ .+++ .+.. ....
T Consensus 311 ~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GM 390 (908)
T PRK13107 311 NAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGM 390 (908)
T ss_pred HHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcc
Confidence 011110 00 00 0110 0000 0000
Q ss_pred -------ccc----ceEEEEeccCCC---------CCcchhhhHHHHHHHHHh--cCCCCeEEEEEcccccHHHHHHHHH
Q psy8497 229 -------LLG----VKQLVALIPECK---------NPSLRYVDEEKKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLA 286 (2355)
Q Consensus 229 -------~se----VrQvVvqVpe~k---------n~sLt~lsKkeaLLqLLe--rl~kgRVLVFSQTRKmAEiLADyLr 286 (2355)
... ...-+..+|... ..+.+...+..++.+.+. ...+.+|||||.++..++.|..+|.
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~ 470 (908)
T PRK13107 391 TGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMV 470 (908)
T ss_pred cCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHH
Confidence 000 011122222111 111112233333333332 1234689999999999999999999
Q ss_pred hcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc--------------------------------
Q psy8497 287 NANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV-------------------------------- 334 (2355)
Q Consensus 287 ErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV-------------------------------- 334 (2355)
..++.+..||+.+...++..+.+.|+.|. |+|||+++++|+||.=-
T Consensus 471 ~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 548 (908)
T PRK13107 471 KEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEV 548 (908)
T ss_pred HCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999998 99999999999998621
Q ss_pred -----cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 335 -----DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 335 -----DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
=+||....+-|..-..|..|||||.|.+|....|++-++.-+
T Consensus 549 ~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 549 VAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 268888889999999999999999999999999997766544
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=233.54 Aligned_cols=331 Identities=17% Similarity=0.202 Sum_probs=217.1
Q ss_pred CCCcHHHHHHHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCC-CCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 42 VKESPIQMAAFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ-QPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~q-ggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
..|++||.++++|+.. ..++|++++||+|||++.+..+.. +...... .+++||+||+..+ .+|..++..
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~~~~~~~liv~p~s~~----~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIKVYLGPALIVVPASLL----SNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhcccCCCCCeEEEecHHHH----HHHHHHHhh
Confidence 5789999999999772 567999999999999776655443 3322222 5789999999887 667767677
Q ss_pred ccCCcE-EEEEECCccc----c----CCCC-----CCcEEEECHHHHHHHH-HhhcccCcCceEEEecccchhcccChHH
Q psy8497 116 HVKNLH-VDYFIGGTQV----E----RPKR-----PVQIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINTGFVE 180 (2355)
Q Consensus 116 ~APgLr-VVvytGGkq~----r----kqir-----q~DILVTTPErLLDLL-drr~LdLSkIdLLIVDEAHRLkN~GF~S 180 (2355)
++|.++ +..+.|.... . .... .++|+++||+.|...+ ....+....|+.+|+||+|++++.. .
T Consensus 412 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~--s 489 (866)
T COG0553 412 FAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ--S 489 (866)
T ss_pred hCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh--h
Confidence 778888 8888887752 1 1111 1789999999986632 3345567789999999999988754 2
Q ss_pred HHHHHHHhCCCCceEEEEEeccChhHHHHHHHhcc---CCeee-------------------------------------
Q psy8497 181 DITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV---DPLLI------------------------------------- 220 (2355)
Q Consensus 181 rLeeILs~LppnrQILLLSATLS~EILElLkKfLr---dPvII------------------------------------- 220 (2355)
.....+..+....+ +++|.||..+.+..+..++. .|...
T Consensus 490 ~~~~~l~~~~~~~~-~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 490 SEGKALQFLKALNR-LDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred HHHHHHHHHhhcce-eeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 22222223332222 66666664322221111110 00000
Q ss_pred ------ccCCCcc-cc---------------------------c-------cceE---E---------------------
Q psy8497 221 ------RPEDATR-PL---------------------------L-------GVKQ---L--------------------- 235 (2355)
Q Consensus 221 ------rVesee~-~~---------------------------s-------eVrQ---v--------------------- 235 (2355)
+...... .. . .+.. .
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 648 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRL 648 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 0000000 00 0 0000 0
Q ss_pred --EEeccCCCCCc--c-----------------------hhh-hHHHHHHHHH---hcCCCC--eEEEEEcccccHHHHH
Q psy8497 236 --VALIPECKNPS--L-----------------------RYV-DEEKKLVQLL---SQTPFN--QCVIFSNYQLRPEVIC 282 (2355)
Q Consensus 236 --VvqVpe~kn~s--L-----------------------t~l-sKkeaLLqLL---erl~kg--RVLVFSQTRKmAEiLA 282 (2355)
+...+...... . ... .+...+..++ ...... ++|||++++.+++.|.
T Consensus 649 r~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~ 728 (866)
T COG0553 649 RQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLE 728 (866)
T ss_pred HHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHH
Confidence 00000000000 0 000 2334444444 112234 9999999999999999
Q ss_pred HHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC--CccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCC
Q psy8497 283 ENLANANFGAEYLSGAQDQKARLASLDSFKRG--KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360 (2355)
Q Consensus 283 DyLrErGIKVarLHGgMSqEERqeILErFRSG--EIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG 360 (2355)
.+|...++.+.+++|.++...|..+++.|+++ ...+|+++.+++.|||+..+++||++|++|||....|++.||+|+|
T Consensus 729 ~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Rig 808 (866)
T COG0553 729 DYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIG 808 (866)
T ss_pred HHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999985 5567889999999999999999999999999999999999999999
Q ss_pred CccEEEEEEcccCHHHHHHH
Q psy8497 361 TRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 361 QkGkVIVLVSsdDVEeIEsL 380 (2355)
++..|.++.........+.+
T Consensus 809 Q~~~v~v~r~i~~~tiEe~i 828 (866)
T COG0553 809 QKRPVKVYRLITRGTIEEKI 828 (866)
T ss_pred CcceeEEEEeecCCcHHHHH
Confidence 87766655544443333333
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-19 Score=223.98 Aligned_cols=138 Identities=15% Similarity=0.260 Sum_probs=116.8
Q ss_pred HHHHHH-----HCCCCCC---cHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 32 IRQGLQ-----ENGFVKE---SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 32 LLK~Lq-----a~GF~eL---RPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
+.+.+. ..||..| +|||.++++.++.++++|..++||+|||++|++|++..+.. +..++||+|++.||
T Consensus 73 ~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~----g~~v~IVTpTrELA 148 (970)
T PRK12899 73 VCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT----GKPVHLVTVNDYLA 148 (970)
T ss_pred HHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----cCCeEEEeCCHHHH
Confidence 555555 5788877 99999999999999999999999999999999999977653 33589999999999
Q ss_pred HHHHHHHHHHhcccCCcEEEEEECCccccCC--CCCCcEEEECHHHH-HHHHHhhcccCc-------CceEEEecccchh
Q psy8497 104 VQITDVVRSVGAHVKNLHVDYFIGGTQVERP--KRPVQIVVGSPGRI-KQMIKLKYLNMD-------SVRLFIMDEADKL 173 (2355)
Q Consensus 104 qQ~anwLREFgk~APgLrVVvytGGkq~rkq--irq~DILVTTPErL-LDLLdrr~LdLS-------kIdLLIVDEAHRL 173 (2355)
.|..+++..+..++ ++++.+++|+...... ...++|+|+||.+| .+++....+.+. .+.++|||||+.|
T Consensus 149 ~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsm 227 (970)
T PRK12899 149 QRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (970)
T ss_pred HHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhh
Confidence 99999999998887 7999999998765432 12489999999999 999987755544 5589999999987
Q ss_pred c
Q psy8497 174 I 174 (2355)
Q Consensus 174 k 174 (2355)
+
T Consensus 228 L 228 (970)
T PRK12899 228 L 228 (970)
T ss_pred h
Confidence 5
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=213.52 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=100.6
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC-CccE-EEEecccccccCCCCccEEEEecC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG-KVRI-LVTTDLAARGIDAANVDLVINLEI 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG-EIdV-LVSTSALGEGLDLPaVDTVIIyDS 342 (2355)
.-+.|||++...+++.+.-.|.+.|+.++-|.|+|++..|...|+.|.+. ++.| ||+-.++++-|||..+..|+++|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 34899999999999999999999999999999999999999999999964 5554 778899999999999999999999
Q ss_pred CCCHhHHHHHhhccCCCCC--ccEEEEEEcccCHHH
Q psy8497 343 PHDAATYLHRMGRAGRYGT--RGLVITIVSAESLVK 376 (2355)
Q Consensus 343 P~SPqSYIQRIGRAGRiGQ--kGkVIVLVSsdDVEe 376 (2355)
-|||..-.|+..|.||+|| +.+|+.|+...+++.
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~ 753 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEE 753 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhccHHH
Confidence 9999999999999999995 667777777665543
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=218.92 Aligned_cols=314 Identities=19% Similarity=0.215 Sum_probs=222.8
Q ss_pred cHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 45 RPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
+.+..+.+..+.+..-+||++|||+|||.+.-..++.... ...+.+.++-|.+..|..+.+.+.+-....++-.|++
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY 128 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGY 128 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeE
Confidence 4455566677777778999999999999654444443322 4566788888999888888888877655544555544
Q ss_pred EECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccCh-HHHHHHHHHhCCCCceEEEEEecc
Q psy8497 125 FIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGF-VEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 125 ytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~GF-~SrLeeILs~LppnrQILLLSATL 202 (2355)
-+-.... ......|-++|-+.|+..+..+.+ +..+++|||||+|. .++..+ ...+..++...+...++|+||||+
T Consensus 129 ~iRfe~~--~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 129 SIRFESK--VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred EEEeecc--CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 4332221 122367999999999988887664 88999999999994 444443 344555677777779999999999
Q ss_pred ChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHH
Q psy8497 203 SHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVIC 282 (2355)
Q Consensus 203 S~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLA 282 (2355)
..+ .+..++.+.-++.+.....+ +...+..... ........+...+.+......+-+|||.+.....+.++
T Consensus 206 d~~---rfs~~f~~apvi~i~GR~fP---Vei~Y~~~~~---~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~ 276 (845)
T COG1643 206 DAE---RFSAYFGNAPVIEIEGRTYP---VEIRYLPEAE---ADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTA 276 (845)
T ss_pred CHH---HHHHHcCCCCEEEecCCccc---eEEEecCCCC---cchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHH
Confidence 743 34555554444444443322 2222211111 11113333444455555555789999999999999999
Q ss_pred HHHHh----cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEE--------Eec---------
Q psy8497 283 ENLAN----ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI--------NLE--------- 341 (2355)
Q Consensus 283 DyLrE----rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI--------IyD--------- 341 (2355)
+.|.+ ..+.+..|||.|+..++.++++---.+.-+|++||++.+.+|.||.+.+|| .|+
T Consensus 277 ~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~ 356 (845)
T COG1643 277 EWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLE 356 (845)
T ss_pred HHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeee
Confidence 99998 347789999999999999987766667666999999999999999999999 222
Q ss_pred -CCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 342 -IPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 342 -SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.|.|-.+..||.|||||. .+|.||.+++..+.
T Consensus 357 ~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~ 389 (845)
T COG1643 357 TEPISKASADQRAGRAGRT-GPGICYRLYSEEDF 389 (845)
T ss_pred EEEechhhhhhhccccccC-CCceEEEecCHHHH
Confidence 233778899999999995 78999999986443
|
|
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=219.90 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=106.5
Q ss_pred HHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHh----------------------cCCccEEeeCCCCHHHHHHHHH
Q psy8497 254 KKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLAN----------------------ANFGAEYLSGAQDQKARLASLD 309 (2355)
Q Consensus 254 eaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrE----------------------rGIKVarLHGgMSqEERqeILE 309 (2355)
..|+.||... -+.++|||+++...++.|..+|.. .|..+.+|+|.+...+|..+.+
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 4455555433 246999999999999999999975 2467899999999999999999
Q ss_pred HHhCCC----ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 310 SFKRGK----VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 310 rFRSGE----IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
.|++.. -.+||+|+|++.||||-+++-|||||..|||.-++|.|=|+.|.||...|++|.......+.+.|
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKI 1283 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKI 1283 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHH
Confidence 999753 24799999999999999999999999999999999999999999988888877755544444444
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-18 Score=212.54 Aligned_cols=304 Identities=14% Similarity=0.153 Sum_probs=179.5
Q ss_pred CCcHHHHHHHHHHHc----------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLN----------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
.++++|.+|+..+.. .+.+||+.+||+|||++++..+...+. ....++||||||+..|..|+.+.+..
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~--~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE--LLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh--hcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 479999999988752 246999999999999887766544432 24567899999999999999999998
Q ss_pred HhcccCCcEEEEEECCcc-ccC--CCCCCcEEEECHHHHHHHHHhh--cccC-cCceEEEecccchhcccChHHHHHHHH
Q psy8497 113 VGAHVKNLHVDYFIGGTQ-VER--PKRPVQIVVGSPGRIKQMIKLK--YLNM-DSVRLFIMDEADKLINTGFVEDITWIY 186 (2355)
Q Consensus 113 Fgk~APgLrVVvytGGkq-~rk--qirq~DILVTTPErLLDLLdrr--~LdL-SkIdLLIVDEAHRLkN~GF~SrLeeIL 186 (2355)
++...+ ...+... ... ......|+|+|.++|...+... .+.. ..-.+|||||||+.... .+...+
T Consensus 316 ~~~~~~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~~~~l 386 (667)
T TIGR00348 316 LQKDCA-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----ELAKNL 386 (667)
T ss_pred hCCCCC-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HHHHHH
Confidence 853210 0011110 000 1112679999999997543321 1111 11128999999986533 233333
Q ss_pred -HhCCCCceEEEEEeccChhHHH-HHHHhc--cCCeeeccCCCc----cccccceEEEEeccCCC---------------
Q psy8497 187 -SQLPPMKQMLVVSATYSHDNLA-TLQKYM--VDPLLIRPEDAT----RPLLGVKQLVALIPECK--------------- 243 (2355)
Q Consensus 187 -s~LppnrQILLLSATLS~EILE-lLkKfL--rdPvIIrVesee----~~~seVrQvVvqVpe~k--------------- 243 (2355)
..+ +...+|+|||||...... ....+. ....+....... ....++...........
T Consensus 387 ~~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~ 465 (667)
T TIGR00348 387 KKAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFEL 465 (667)
T ss_pred HhhC-CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHh
Confidence 344 457899999999642111 111110 111111111110 00011110000000000
Q ss_pred -----CCcch-h------------------hhHHHHHHHHHh---cCCCCeEEEEEcccccHHHHHHHHHhc-----CCc
Q psy8497 244 -----NPSLR-Y------------------VDEEKKLVQLLS---QTPFNQCVIFSNYQLRPEVICENLANA-----NFG 291 (2355)
Q Consensus 244 -----n~sLt-~------------------lsKkeaLLqLLe---rl~kgRVLVFSQTRKmAEiLADyLrEr-----GIK 291 (2355)
..... . ......+++.+. .....+++|||.++..|..+.+.|.+. +..
T Consensus 466 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~ 545 (667)
T TIGR00348 466 LPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEAS 545 (667)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCe
Confidence 00000 0 000011111111 112369999999999999999888664 234
Q ss_pred cEEeeCCCCHH---------------------HHHHHHHHHhC-CCccEEEEecccccccCCCCccEEEEecCCCCHhHH
Q psy8497 292 AEYLSGAQDQK---------------------ARLASLDSFKR-GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATY 349 (2355)
Q Consensus 292 VarLHGgMSqE---------------------ERqeILErFRS-GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSY 349 (2355)
...+++..... ....++++|++ +.++|||+++++.+|+|.|.+.++++.-+ ...+.+
T Consensus 546 ~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKp-lk~h~L 624 (667)
T TIGR00348 546 AIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKP-LKYHGL 624 (667)
T ss_pred eEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecc-ccccHH
Confidence 45555543322 22478899986 68899999999999999999998886554 445679
Q ss_pred HHHhhccCCC
Q psy8497 350 LHRMGRAGRY 359 (2355)
Q Consensus 350 IQRIGRAGRi 359 (2355)
+|++||+.|.
T Consensus 625 lQai~R~nR~ 634 (667)
T TIGR00348 625 LQAIARTNRI 634 (667)
T ss_pred HHHHHHhccc
Confidence 9999999994
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-17 Score=211.68 Aligned_cols=332 Identities=17% Similarity=0.218 Sum_probs=206.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHH----HHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFP----YVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQIT 107 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn----~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~a 107 (2355)
+.+.+...|| ++++.|.+.+. .+..++.+++.||||+|||++|+++++..+. .+.++||.+||++|..|+.
T Consensus 235 ~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----~~~~vvi~t~t~~Lq~Ql~ 309 (850)
T TIGR01407 235 FSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----TEKPVVISTNTKVLQSQLL 309 (850)
T ss_pred HHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----CCCeEEEEeCcHHHHHHHH
Confidence 6777777888 58999998766 4445788999999999999999999987654 3568999999999999986
Q ss_pred H-HHHHHhcccC-CcEEEEEECCccc----------------------------------------c------C------
Q psy8497 108 D-VVRSVGAHVK-NLHVDYFIGGTQV----------------------------------------E------R------ 133 (2355)
Q Consensus 108 n-wLREFgk~AP-gLrVVvytGGkq~----------------------------------------r------k------ 133 (2355)
. .+..+...++ .++++++.|.... - .
T Consensus 310 ~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i 389 (850)
T TIGR01407 310 EKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQV 389 (850)
T ss_pred HHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHh
Confidence 5 4544433321 3555555543211 0 0
Q ss_pred -----------------------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-------h-----
Q psy8497 134 -----------------------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-------F----- 178 (2355)
Q Consensus 134 -----------------------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-------F----- 178 (2355)
....++||||++..|+..+.....-+....+|||||||+|.+.. +
T Consensus 390 ~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~ 469 (850)
T TIGR01407 390 RHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYADI 469 (850)
T ss_pred hcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHHHH
Confidence 00016899999998876654332234556799999999975310 0
Q ss_pred H---HHH-------------------------------------------------------------HHHHHh------
Q psy8497 179 V---EDI-------------------------------------------------------------TWIYSQ------ 188 (2355)
Q Consensus 179 ~---SrL-------------------------------------------------------------eeILs~------ 188 (2355)
. ..+ ...+..
T Consensus 470 ~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 549 (850)
T TIGR01407 470 KYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFK 549 (850)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 0 000 000000
Q ss_pred -----C-------------------------------------CCCceEEEEEeccChh-HHHHHHHhccCC-ee-eccC
Q psy8497 189 -----L-------------------------------------PPMKQMLVVSATYSHD-NLATLQKYMVDP-LL-IRPE 223 (2355)
Q Consensus 189 -----L-------------------------------------ppnrQILLLSATLS~E-ILElLkKfLrdP-vI-IrVe 223 (2355)
+ +....+|++|||+... ....+...+.-. .. ....
T Consensus 550 ~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~ 629 (850)
T TIGR01407 550 NIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIE 629 (850)
T ss_pred HHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceec
Confidence 0 0112568889998732 233343333211 11 1111
Q ss_pred CCccccccceEEEEeccCCCC-C----cchhh-hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC--CccEEe
Q psy8497 224 DATRPLLGVKQLVALIPECKN-P----SLRYV-DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN--FGAEYL 295 (2355)
Q Consensus 224 see~~~seVrQvVvqVpe~kn-~----sLt~l-sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG--IKVarL 295 (2355)
..+.....+....++.... . ...+. .....|..++... .+++|||+++.++++.++..|.... ..+..+
T Consensus 630 --~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~-~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l 706 (850)
T TIGR01407 630 --PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAIT-SPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL 706 (850)
T ss_pred --CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHhhhccccCceEE
Confidence 1111112233333332211 0 11122 2224444554443 4699999999999999999997521 123344
Q ss_pred eCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc--EEEEecCCCC-H--------------------------
Q psy8497 296 SGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD--LVINLEIPHD-A-------------------------- 346 (2355)
Q Consensus 296 HGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD--TVIIyDSP~S-P-------------------------- 346 (2355)
..+.. ..|..+++.|+.++..|||+|..+.+|||+|... +||+...|+. |
T Consensus 707 ~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP 785 (850)
T TIGR01407 707 AQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLP 785 (850)
T ss_pred ecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHH
Confidence 44443 5789999999999999999999999999999965 5778888862 1
Q ss_pred ---hHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 347 ---ATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 347 ---qSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
..+.|++||+-|...+..++++++..
T Consensus 786 ~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 786 MAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHHHHHHHhhccccccCCceEEEEEEccc
Confidence 23579999999977666666666543
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-16 Score=197.67 Aligned_cols=138 Identities=20% Similarity=0.296 Sum_probs=119.9
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC--
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI-- 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS-- 342 (2355)
..++||||.++..++.|+..|...|+.+..+||+++..+|..++..|+.|.+.|||||.++++|+|+|.+++||++|.
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~ei 525 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADK 525 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcc
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ---CCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH-----HHhhccccccccCCCccchhhhh
Q psy8497 343 ---PHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL-----MGEINLDHAFNVGLVPDNLTGDQ 403 (2355)
Q Consensus 343 ---P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL-----rReLKLKLaLe~eIVPkgLlKeq 403 (2355)
|.++..|+||+||+||. ..|.+|+|+...+..+.+.+ ++.....+.....++|+.+.+..
T Consensus 526 fG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 593 (652)
T PRK05298 526 EGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKKI 593 (652)
T ss_pred cccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHH
Confidence 56999999999999994 78999999986655543333 33445556667778888776654
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=205.64 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=119.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.|-.||.+.+..+-++..++|+|||.+|||.+...++-..|.. .+.+-||+++|+++|+.|+...+...+....-.+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe--sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE--SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh--cCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 5678999999999999999999999999999888777766664 45678999999999999998877765533222333
Q ss_pred EEEECCccccCCCC--CCcEEEECHHHHHHHHHh---hcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 123 DYFIGGTQVERPKR--PVQIVVGSPGRIKQMIKL---KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 123 VvytGGkq~rkqir--q~DILVTTPErLLDLLdr---r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
+.+.|.-.-+-.+. .++|+||-|+.+..++.. .......+.+||+||+|.+.+..-.-.++.++... .+.+|+
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~ 666 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLV 666 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCeeE
Confidence 44444433332233 489999999999877765 23345788999999999988665444455555544 478999
Q ss_pred EEeccChhH
Q psy8497 198 VSATYSHDN 206 (2355)
Q Consensus 198 LSATLS~EI 206 (2355)
+|||..+..
T Consensus 667 LSATigN~~ 675 (1330)
T KOG0949|consen 667 LSATIGNPN 675 (1330)
T ss_pred EecccCCHH
Confidence 999988543
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-16 Score=202.20 Aligned_cols=285 Identities=15% Similarity=0.237 Sum_probs=194.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
+-+.+.+.-...|+..|.-....+++|++.-|.||||.||| .+.+.+..++. ..+++++||+||..|+.|+.+.+.
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKT-Tfg~~~sl~~a---~kgkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKT-TFGLLMSLYLA---KKGKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchh-HHHHHHHHHHH---hcCCeEEEEecCHHHHHHHHHHHH
Confidence 55556665434999999999999999999999999999999 55544444444 356899999999999999999999
Q ss_pred HHhcccCCcEEEE-EECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-----
Q psy8497 112 SVGAHVKNLHVDY-FIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG----- 177 (2355)
Q Consensus 112 EFgk~APgLrVVv-ytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G----- 177 (2355)
+|......+.+.+ |++.-.... ....++|+|||..-|...+. .+..-++++|+||.++.++-.+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e--~L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE--ELSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH--HhcccCCCEEEEccHHHHHhccccHHH
Confidence 9976653344333 555522221 12249999999887755443 2333578899999999765221
Q ss_pred ------hHH-----------------------HHHHHHHh--------CCCCceEEEEEeccChhHH--HHHHHhccCCe
Q psy8497 178 ------FVE-----------------------DITWIYSQ--------LPPMKQMLVVSATYSHDNL--ATLQKYMVDPL 218 (2355)
Q Consensus 178 ------F~S-----------------------rLeeILs~--------LppnrQILLLSATLS~EIL--ElLkKfLrdPv 218 (2355)
|.. .+..++.. -....++|+.|||..+.-. .++..+|.
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg--- 301 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG--- 301 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---
Confidence 111 11111111 1234588999999765432 22222222
Q ss_pred eeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcc---cccHHHHHHHHHhcCCccEEe
Q psy8497 219 LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNY---QLRPEVICENLANANFGAEYL 295 (2355)
Q Consensus 219 IIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQT---RKmAEiLADyLrErGIKVarL 295 (2355)
+.+........++...+... .....++.++..... -.|||++. ++.++.|+++|+..|+++..+
T Consensus 302 -FevG~~~~~LRNIvD~y~~~-----------~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~ 368 (1187)
T COG1110 302 -FEVGSGGEGLRNIVDIYVES-----------ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELI 368 (1187)
T ss_pred -CccCccchhhhheeeeeccC-----------ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEe
Confidence 12222222222233322221 234455555555533 68999999 999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhCCCccEEEEe----cccccccCCCC-ccEEEEecCC
Q psy8497 296 SGAQDQKARLASLDSFKRGKVRILVTT----DLAARGIDAAN-VDLVINLEIP 343 (2355)
Q Consensus 296 HGgMSqEERqeILErFRSGEIdVLVST----SALGEGLDLPa-VDTVIIyDSP 343 (2355)
|+. ....++.|..|+++|||++ .++.+|||||. +..+|+++.|
T Consensus 369 ~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 369 HAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 973 3778999999999999987 57899999998 6889998888
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=196.37 Aligned_cols=311 Identities=20% Similarity=0.216 Sum_probs=211.3
Q ss_pred cHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 45 RPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
..+-.+.+..+..++-+||.++||+|||.+.-..+++.-. ...+.+.+.-|.|..|..++..+.+-..-..+-.|+.
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~---~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGF---ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccc---ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 3444556676777788999999999999553333322212 2344588888999999888877766433322444544
Q ss_pred EECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccC-hHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 125 FIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTG-FVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 125 ytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~G-F~SrLeeILs~LppnrQILLLSATL 202 (2355)
.+--.... .....|.++|-++|+..+..+. .+.++++|||||||. -+... ....+..++.. .+..++|++|||+
T Consensus 130 ~IRFed~t--s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIimSATl 205 (674)
T KOG0922|consen 130 TIRFEDST--SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLIIMSATL 205 (674)
T ss_pred EEEecccC--CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEEEeeee
Confidence 33222211 2246799999999887665554 378999999999994 22222 22333333333 3467999999999
Q ss_pred ChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhh-hHHHHHHHHHhcCCCCeEEEEEcccccHHHH
Q psy8497 203 SHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYV-DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVI 281 (2355)
Q Consensus 203 S~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~l-sKkeaLLqLLerl~kgRVLVFSQTRKmAEiL 281 (2355)
..+ .+..|+....++.+..... +++..+.. .. ...+. .....+.++....+.+-+|||...++..+.+
T Consensus 206 da~---kfS~yF~~a~i~~i~GR~f---PVei~y~~--~p---~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 206 DAE---KFSEYFNNAPILTIPGRTF---PVEILYLK--EP---TADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred cHH---HHHHHhcCCceEeecCCCC---ceeEEecc--CC---chhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 743 4445555544444444332 23333322 21 11222 2234555666667778999999999999999
Q ss_pred HHHHHhc----CC----ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEE--------EecC---
Q psy8497 282 CENLANA----NF----GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI--------NLEI--- 342 (2355)
Q Consensus 282 ADyLrEr----GI----KVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI--------IyDS--- 342 (2355)
++.|.+. .- -+..+||.|+.+++.++...--.|.-+|+|+|++.+..|.|+.+..|| .|++
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 9988875 11 246799999999999988777678889999999999999999999999 3333
Q ss_pred -------CCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 343 -------PHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 343 -------P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|.|..+-.||.|||||. .+|+|+.+++..+.
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 34788899999999995 68999999976554
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-17 Score=166.39 Aligned_cols=184 Identities=28% Similarity=0.490 Sum_probs=143.3
Q ss_pred HCCCCCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
..++.+|+++|.+++..++.. +.++|.++||+|||.+++.+++..+.. ....++||++|+..++.|+...+..+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR--GKGKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc--cCCCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 356789999999999999998 999999999999999888888877663 22468999999999999999999988655
Q ss_pred cCCcEEEEEECCcccc---CCCCC-CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCC
Q psy8497 117 VKNLHVDYFIGGTQVE---RPKRP-VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192 (2355)
Q Consensus 117 APgLrVVvytGGkq~r---kqirq-~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn 192 (2355)
........+.+..... ..... .+|+++|++.+...+....+....+++|||||+|.+....+...+..++..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~ 160 (201)
T smart00487 81 LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKN 160 (201)
T ss_pred CCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCcc
Confidence 4223333333332111 11112 3899999999998888766677888999999999998756778888888888788
Q ss_pred ceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 193 KQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 193 rQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
.+++++|||+..........++.....+...
T Consensus 161 ~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 161 VQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred ceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 9999999999987777777777655554444
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=202.11 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=99.3
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC--CCccE-EEEecccccccCCCCccEEEEe
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR--GKVRI-LVTTDLAARGIDAANVDLVINL 340 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS--GEIdV-LVSTSALGEGLDLPaVDTVIIy 340 (2355)
...+++|.++...++..+...|...|+.+..++|.+...+|+.+++.|+. |..+| ||+-.+++.||||-.++++|++
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 34689999999999999999999999999999999999999999999994 54555 6677999999999999999999
Q ss_pred cCCCCHhHHHHHhhccCCCCCccEEEEEE--cccCHHH
Q psy8497 341 EIPHDAATYLHRMGRAGRYGTRGLVITIV--SAESLVK 376 (2355)
Q Consensus 341 DSP~SPqSYIQRIGRAGRiGQkGkVIVLV--SsdDVEe 376 (2355)
|+.|||+--.|+..|+.|+||+..|+++. ...+++.
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEq 862 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQ 862 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHH
Confidence 99999999999999999999877766654 4455544
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=202.07 Aligned_cols=321 Identities=17% Similarity=0.185 Sum_probs=225.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
..+.++.+.++.+.+.+-+||.++||+|||.+....+|....... ...++++--|.+--|.-+++++..--.+..+-.|
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 447788899999999999999999999999888888887766433 5666777789998888888887765444445444
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
..-.+-...... ...+++||.+.|+..+.. .-.+..+..|||||+|. -.+..|.-.+.+.+-...+..++|+||||
T Consensus 252 GYqvrl~~~~s~--~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT 328 (924)
T KOG0920|consen 252 GYQVRLESKRSR--ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSAT 328 (924)
T ss_pred eEEEeeecccCC--ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeee
Confidence 444443333222 267999999999888866 33578889999999994 34555555555555556688999999999
Q ss_pred cChhHHHHHHHhccCCeeeccCCCcccccc----------------ceEEEEeccCCC----------CCcchhhhHHHH
Q psy8497 202 YSHDNLATLQKYMVDPLLIRPEDATRPLLG----------------VKQLVALIPECK----------NPSLRYVDEEKK 255 (2355)
Q Consensus 202 LS~EILElLkKfLrdPvIIrVesee~~~se----------------VrQvVvqVpe~k----------n~sLt~lsKkea 255 (2355)
+.. +.+..|+...-++.+.....+... ..+. ..+... ... ........
T Consensus 329 ~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-id~~Li~~ 402 (924)
T KOG0920|consen 329 LDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR--SGPERSQLRLARLKLWEPE-IDYDLIED 402 (924)
T ss_pred cch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc--cccccCccccccchhcccc-ccHHHHHH
Confidence 873 334444444434433322211100 0000 000000 000 11223333
Q ss_pred HHHHH-hcCCCCeEEEEEcccccHHHHHHHHHhc-------CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 256 LVQLL-SQTPFNQCVIFSNYQLRPEVICENLANA-------NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 256 LLqLL-erl~kgRVLVFSQTRKmAEiLADyLrEr-------GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
|+..+ .....+.+|||.+....+..+.+.|... .+-+..+|+.|+..+++.+....-.|.-+||++|++++.
T Consensus 403 li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAET 482 (924)
T KOG0920|consen 403 LIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAET 482 (924)
T ss_pred HHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhh
Confidence 33333 3444679999999999999999999742 256788999999999999988888899999999999999
Q ss_pred ccCCCCccEEE--------EecCCC----------CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 328 GIDAANVDLVI--------NLEIPH----------DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 328 GLDLPaVDTVI--------IyDSP~----------SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.|-|++|-.|| .||+-. +..+-.||.||||| -++|.|+.++.....
T Consensus 483 SITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR-v~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 483 SITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR-VRPGICYHLYTRSRY 546 (924)
T ss_pred cccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC-ccCCeeEEeechhhh
Confidence 99999999999 444432 56677899999999 589999999875433
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-17 Score=200.91 Aligned_cols=302 Identities=19% Similarity=0.185 Sum_probs=193.7
Q ss_pred CCCcHHHHHHHHHHHc----C-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 42 VKESPIQMAAFPYVLN----G-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----G-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
..++.||..||..+.. + +.++|++.||+|||.+++. |+.+|++ ....++||+|+-+.+|+.|....+..+...
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIK-SGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHh-cchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 3789999999988763 3 3499999999999998874 4445552 356789999999999999999998887533
Q ss_pred cCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhh-----cccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 117 VKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLK-----YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 117 APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr-----~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
-....+..+.... ..+.|.|+|+++|....... .+....+++||||||||-. ++....|+..+..
T Consensus 242 ---~~~~n~i~~~~~~---~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I~dYFdA 311 (875)
T COG4096 242 ---GTKMNKIEDKKGD---TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSILDYFDA 311 (875)
T ss_pred ---ccceeeeecccCC---cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHHHHHHHHH
Confidence 3333333332221 14789999999998776553 3445669999999999844 3444455555432
Q ss_pred CceEEEEEeccChhHHHHHHHh-------------------ccCCeeeccCC----Cccccccc-------eEEE-----
Q psy8497 192 MKQMLVVSATYSHDNLATLQKY-------------------MVDPLLIRPED----ATRPLLGV-------KQLV----- 236 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKf-------------------LrdPvIIrVes----ee~~~seV-------rQvV----- 236 (2355)
. ++++||||........-.+ |..+-.+.+.. ........ ...+
T Consensus 312 ~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~ 389 (875)
T COG4096 312 A--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQ 389 (875)
T ss_pred H--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccc
Confidence 2 2445999876332222222 22211111110 00000000 0000
Q ss_pred --EeccCCCCCcc--hhhhHHHHHHHHHhc--CC--CCeEEEEEcccccHHHHHHHHHhcC-----CccEEeeCCCCHHH
Q psy8497 237 --ALIPECKNPSL--RYVDEEKKLVQLLSQ--TP--FNQCVIFSNYQLRPEVICENLANAN-----FGAEYLSGAQDQKA 303 (2355)
Q Consensus 237 --vqVpe~kn~sL--t~lsKkeaLLqLLer--l~--kgRVLVFSQTRKmAEiLADyLrErG-----IKVarLHGgMSqEE 303 (2355)
...+....... ........|...|.. .. ..++||||.+..+|+.+...|.... --+..|.|.. ++
T Consensus 390 ~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~ 467 (875)
T COG4096 390 NFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQ 467 (875)
T ss_pred cccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hh
Confidence 00000000000 001122445555655 22 4699999999999999999998752 2245566653 33
Q ss_pred HHHHHHHHhC--CCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC
Q psy8497 304 RLASLDSFKR--GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY 359 (2355)
Q Consensus 304 RqeILErFRS--GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi 359 (2355)
-+..|+.|.. ..-.|.|+.+++..|||+|.|-+++++-.-.|..-|.||+||+-|.
T Consensus 468 ~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 468 AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 3455666664 3446888999999999999999999999999999999999999995
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=195.19 Aligned_cols=124 Identities=20% Similarity=0.215 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccc
Q psy8497 251 DEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARG 328 (2355)
Q Consensus 251 sKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEG 328 (2355)
.+...|...+... ...+|||||.++..++.|...|...++.+..||+ .+.+|...|..|..+...|+|||+++++|
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 4556676666433 4569999999999999999999999999999997 68899999999999999999999999999
Q ss_pred cCCC---Ccc-----EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 329 IDAA---NVD-----LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 329 LDLP---aVD-----TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
+||+ .|. +||.+..|.+...|.|++||+||.|.+|.++.|++..+.-+
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 9999 443 34888888999999999999999999999999998766544
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-16 Score=193.71 Aligned_cols=343 Identities=17% Similarity=0.218 Sum_probs=204.8
Q ss_pred ccccCcccCCcHHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEE
Q psy8497 19 DVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTI 94 (2355)
Q Consensus 19 DkV~SFEeLlLkpLLK~Lqa~GF~eLRPYQeEALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVL 94 (2355)
+....|+.+.+.++...|.-..-..|+|+|+.|+...+++ ...-|.+.||+|||++.+ -|.+.|. ..++|
T Consensus 137 es~IDW~~f~p~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala-----~~~iL 210 (1518)
T COG4889 137 ESPIDWDIFDPTELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA-----AARIL 210 (1518)
T ss_pred cCCCChhhcCccccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh-----hhheE
Confidence 4557888888866777777777779999999999999875 236677889999998876 4555555 37899
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCC-----------------------------CCcEEEECH
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-----------------------------PVQIVVGSP 145 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqir-----------------------------q~DILVTTP 145 (2355)
+|||+.+|..|..+....- ... .++...+..+........ .--||++||
T Consensus 211 ~LvPSIsLLsQTlrew~~~-~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTY 288 (1518)
T COG4889 211 FLVPSISLLSQTLREWTAQ-KEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTY 288 (1518)
T ss_pred eecchHHHHHHHHHHHhhc-cCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcc
Confidence 9999999988865544332 122 455555555543322111 134999999
Q ss_pred HHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC-----CCCceEEEEEeccChhHHHHHHHhcc-CCee
Q psy8497 146 GRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL-----PPMKQMLVVSATYSHDNLATLQKYMV-DPLL 219 (2355)
Q Consensus 146 ErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L-----ppnrQILLLSATLS~EILElLkKfLr-dPvI 219 (2355)
+.+...-......+..+++||+|||||.....+...-...+..+ -...+.+.|||||.-.....-.+.-. ...+
T Consensus 289 QSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l 368 (1518)
T COG4889 289 QSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL 368 (1518)
T ss_pred cchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee
Confidence 99887777777778999999999999964221100000000000 01234578899876221111111000 0001
Q ss_pred eccCCC-----------------ccccccceEEEEeccCCC------------C--CcchhhhHH----HHHHHHHh---
Q psy8497 220 IRPEDA-----------------TRPLLGVKQLVALIPECK------------N--PSLRYVDEE----KKLVQLLS--- 261 (2355)
Q Consensus 220 IrVese-----------------e~~~seVrQvVvqVpe~k------------n--~sLt~lsKk----eaLLqLLe--- 261 (2355)
.....+ ....-..+.++..+.+.. . ..+....+. ..|..--.
T Consensus 369 ~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n 448 (1518)
T COG4889 369 SSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDN 448 (1518)
T ss_pred eccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccc
Confidence 100000 000001111111111100 0 000000111 11111100
Q ss_pred ---c-----CCCCeEEEEEcccccHHHHHHHHHh-------------c--CCccEEeeCCCCHHHHHHHHHHHh---CCC
Q psy8497 262 ---Q-----TPFNQCVIFSNYQLRPEVICENLAN-------------A--NFGAEYLSGAQDQKARLASLDSFK---RGK 315 (2355)
Q Consensus 262 ---r-----l~kgRVLVFSQTRKmAEiLADyLrE-------------r--GIKVarLHGgMSqEERqeILErFR---SGE 315 (2355)
. .+..|+|-||.+++....+++.+.. . .+.+..++|.|...+|...+..-+ ..+
T Consensus 449 ~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~ne 528 (1518)
T COG4889 449 DLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNE 528 (1518)
T ss_pred cccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcch
Confidence 0 0114778899888877666665542 1 245666789999999966555432 467
Q ss_pred ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC--C-CccEEEEEE
Q psy8497 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY--G-TRGLVITIV 369 (2355)
Q Consensus 316 IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi--G-QkGkVIVLV 369 (2355)
++||--.+.+.+|||+|+.+-||++++-.+.-..+|++||+.|. | .-|.+|+=+
T Consensus 529 ckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 529 CKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred heeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 88998899999999999999999999999999999999999994 3 234444444
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=180.66 Aligned_cols=327 Identities=19% Similarity=0.226 Sum_probs=209.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+.-.|++|+ |..+.||.|||++++++++.... .+..+.||+|+..||.|-++|+..++.++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL----~G~~VhvvT~NdyLA~RDae~m~~ly~~L- 146 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL----QGRRVHVITVNDYLARRDAEWMGPLYEAL- 146 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH----cCCCeEEEcCCHHHHHHHHHHHHHHHHhc-
Confidence 565 89999999999998875 88999999999999988876554 47789999999999999999999999888
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHHH-HHHHh------hcccCcCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRIK-QMIKL------KYLNMDSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErLL-DLLdr------r~LdLSkIdLLIVDEAHRLk-N~------------ 176 (2355)
++.|.++.++.... ...-.++|+++|...|- ++|+. .....+.+.++||||++.++ +.
T Consensus 147 GLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~ 226 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTP 226 (764)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCc
Confidence 99999998875433 22334899999976432 22222 12234678899999999754 21
Q ss_pred --ChHHHHHHHHHhCCCC--------ceEEEEEec--------------cCh----hHHHHH----H-H-hcc-C-Ceee
Q psy8497 177 --GFVEDITWIYSQLPPM--------KQMLVVSAT--------------YSH----DNLATL----Q-K-YMV-D-PLLI 220 (2355)
Q Consensus 177 --GF~SrLeeILs~Lppn--------rQILLLSAT--------------LS~----EILElL----k-K-fLr-d-PvII 220 (2355)
..+..+..+...+... .+.+.+|.. ... .....+ . . ++. + .+++
T Consensus 227 ~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 306 (764)
T PRK12326 227 GEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIV 306 (764)
T ss_pred chhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 1333444445544332 122333320 000 000000 0 0 010 0 0010
Q ss_pred ------ccCCC-cc------------------------------------------------------ccccc----eEE
Q psy8497 221 ------RPEDA-TR------------------------------------------------------PLLGV----KQL 235 (2355)
Q Consensus 221 ------rVese-e~------------------------------------------------------~~seV----rQv 235 (2355)
.+... .. ....+ ..-
T Consensus 307 ~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~ 386 (764)
T PRK12326 307 RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLG 386 (764)
T ss_pred ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCc
Confidence 00000 00 00000 001
Q ss_pred EEeccCCC---------CCcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHH
Q psy8497 236 VALIPECK---------NPSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304 (2355)
Q Consensus 236 VvqVpe~k---------n~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEER 304 (2355)
+..+|..+ ..+.....+..++.+.+.. ..+.+|||.+.++...+.|...|.+.|++...|...-...|
T Consensus 387 Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E- 465 (764)
T PRK12326 387 VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE- 465 (764)
T ss_pred EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-
Confidence 12222111 1111122333333333321 24569999999999999999999999999999998754433
Q ss_pred HHHHHHHhCCC-ccEEEEecccccccCCCCc---------------cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEE
Q psy8497 305 LASLDSFKRGK-VRILVTTDLAARGIDAANV---------------DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITI 368 (2355)
Q Consensus 305 qeILErFRSGE-IdVLVSTSALGEGLDLPaV---------------DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVL 368 (2355)
..++.. .|. -.|.|||+++++|.||.-- =+||....+.|..-..|..|||||.|.+|.+..|
T Consensus 466 A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 466 ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred HHHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 233322 443 3699999999999998632 2688888999999999999999999999999999
Q ss_pred EcccCHHH
Q psy8497 369 VSAESLVK 376 (2355)
Q Consensus 369 VSsdDVEe 376 (2355)
++-++.-+
T Consensus 544 lSleDdl~ 551 (764)
T PRK12326 544 VSLEDDVV 551 (764)
T ss_pred EEcchhHH
Confidence 87665443
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-15 Score=180.96 Aligned_cols=309 Identities=19% Similarity=0.263 Sum_probs=205.2
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh--cCCCCCeEEEEcccHHHHHHHHHHHHH-HhcccCC
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK--LPVQQPQTIILAPTREIAVQITDVVRS-VGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e--kr~qggRVLILVPTRALAqQ~anwLRE-Fgk~APg 119 (2355)
..++|-.+.|..+...+=+||.++||+|||.+ +.-. |.+ ....+.++-+.-|.+..|..+...+.+ ++-.+ +
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQ-iPQy---L~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL-G 339 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ-IPQY---LYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL-G 339 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCcccc-ccHH---HHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccc-c
Confidence 45777777888888788899999999999954 3222 222 122344477777999999888766654 43222 2
Q ss_pred cEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 120 LHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 120 LrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
-.|.+-+--..... ...-|-++|-++|+.-+.... .+..+.+|||||||. .+.....--+..-+..+.+...+|+.
T Consensus 340 ~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIs 416 (902)
T KOG0923|consen 340 HEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLIS 416 (902)
T ss_pred cccceEEEeccccC--cceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEee
Confidence 22222111111111 124477999999877665444 588999999999994 33333222222333344578899999
Q ss_pred EeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhh-HHHHHHHHHhcCCCCeEEEEEccccc
Q psy8497 199 SATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD-EEKKLVQLLSQTPFNQCVIFSNYQLR 277 (2355)
Q Consensus 199 SATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ls-KkeaLLqLLerl~kgRVLVFSQTRKm 277 (2355)
|||+..+ .+..|+.+.-++.++....+ +..++...|+. .++. ....++++....+.+-+|||......
T Consensus 417 SAT~DAe---kFS~fFDdapIF~iPGRRyP---Vdi~Yt~~PEA-----dYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 417 SATMDAE---KFSAFFDDAPIFRIPGRRYP---VDIFYTKAPEA-----DYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred ccccCHH---HHHHhccCCcEEeccCcccc---eeeecccCCch-----hHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 9999743 34555665555555544332 22333333322 2222 22344444444556789999999988
Q ss_pred HHHHHHHHHhc----C-----CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE---------
Q psy8497 278 PEVICENLANA----N-----FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN--------- 339 (2355)
Q Consensus 278 AEiLADyLrEr----G-----IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII--------- 339 (2355)
.+.+...|..+ | +-+..||+.++.+.+.+|++---.|.-+|++||++++..|.|+.+..||-
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 87777766653 2 45788999999999999987766788899999999999999999999981
Q ss_pred ---------ecCCCCHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 340 ---------LEIPHDAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 340 ---------yDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
.-.|.|..+-.||+|||||. .+|+|+.+++.
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRt-gPGKCfRLYt~ 605 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRT-GPGKCFRLYTA 605 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCC-CCCceEEeech
Confidence 12234677889999999996 47999999864
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-14 Score=183.04 Aligned_cols=314 Identities=16% Similarity=0.239 Sum_probs=191.9
Q ss_pred CCCCCCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHH-HHHHHH
Q psy8497 39 NGFVKESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQIT-DVVRSV 113 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~a-nwLREF 113 (2355)
.|| +.|+-|.+....+. .+..+|+.|+||+|||++|+++++... .+.++||++||++|+.|+. ..+..+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 355 89999999666554 356799999999999999999987643 3578999999999999994 666666
Q ss_pred hcccCCcEEEEEECCcccc----------------------------------------------C--------------
Q psy8497 114 GAHVKNLHVDYFIGGTQVE----------------------------------------------R-------------- 133 (2355)
Q Consensus 114 gk~APgLrVVvytGGkq~r----------------------------------------------k-------------- 133 (2355)
.... ++.+.++.|+...- .
T Consensus 316 ~~~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 316 QEVF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHhc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 5544 55555555432100 0
Q ss_pred ---------------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-----h-------HH------
Q psy8497 134 ---------------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-----F-------VE------ 180 (2355)
Q Consensus 134 ---------------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-----F-------~S------ 180 (2355)
....++|||+....|+..+.... .+...++|||||||+|.+.. . ..
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 00016899999998776554332 25678999999999975311 0 00
Q ss_pred ----------------------------------------HH----HHH--------HHhC-------------------
Q psy8497 181 ----------------------------------------DI----TWI--------YSQL------------------- 189 (2355)
Q Consensus 181 ----------------------------------------rL----eeI--------Ls~L------------------- 189 (2355)
.+ ..+ ...+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 00 000 0000
Q ss_pred -----------------CCCceEEEEEeccCh-hHHHHHHHhcc-C-CeeeccCCCccccccceEEEEecc-CCCCC---
Q psy8497 190 -----------------PPMKQMLVVSATYSH-DNLATLQKYMV-D-PLLIRPEDATRPLLGVKQLVALIP-ECKNP--- 245 (2355)
Q Consensus 190 -----------------ppnrQILLLSATLS~-EILElLkKfLr-d-PvIIrVesee~~~seVrQvVvqVp-e~kn~--- 245 (2355)
+....+|++|||+.. .... +...+. . .....+. ... ..+....++ .....
T Consensus 554 ~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~--~~~~~~~i~~~~p~~~~~ 627 (820)
T PRK07246 554 TYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDK--KQDQLVVVDQDMPLVTET 627 (820)
T ss_pred eEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CCh--HHccEEEeCCCCCCCCCC
Confidence 001245778888752 1112 222221 1 1111111 111 122222222 11111
Q ss_pred -cchhhh-HHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec
Q psy8497 246 -SLRYVD-EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323 (2355)
Q Consensus 246 -sLt~ls-KkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS 323 (2355)
...+.. ....+..++ ...+++||++.+.++++.+++.|....+.+ ...|... .+..++++|+.+.-.||++|.
T Consensus 628 ~~~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 628 SDEVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred ChHHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc
Confidence 112222 223344444 345799999999999999999997654433 4444221 356789999998888999999
Q ss_pred ccccccCCC--CccEEEEecCCCC-H-----------------------------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 324 LAARGIDAA--NVDLVINLEIPHD-A-----------------------------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 324 ALGEGLDLP--aVDTVIIyDSP~S-P-----------------------------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
...+|||+| ...+||+...|+. | ..+.|.+||.-|.-.+..+|++++.
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 999999997 4666788888862 1 2357999999997655555555554
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=185.47 Aligned_cols=327 Identities=16% Similarity=0.172 Sum_probs=205.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+--.|.+|+ |..+.||.|||++++++++.... .+..|.||+|+..||.|-.+|+..++.++
T Consensus 79 lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al----~G~~VhvvT~ndyLA~RD~e~m~~l~~~l- 150 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNAL----SGKGVHVVTVNDYLARRDANWMRPLYEFL- 150 (913)
T ss_pred hCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 564 88889988777776554 99999999999999988875544 37789999999999999999999999988
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHH-HHHHHhhc------ccCcCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRI-KQMIKLKY------LNMDSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErL-LDLLdrr~------LdLSkIdLLIVDEAHRLk-N~------------ 176 (2355)
++.|.+++++.... .....++|+++|..-| .++|.... .....+.++||||+|.++ +.
T Consensus 151 Gl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~ 230 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAE 230 (913)
T ss_pred CCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCc
Confidence 99999998875432 2233389999998765 23333221 123778899999999864 21
Q ss_pred ---ChHHHHHHHHHhCCC-------------------CceEEEEEeccC----------------hhH-----HHH----
Q psy8497 177 ---GFVEDITWIYSQLPP-------------------MKQMLVVSATYS----------------HDN-----LAT---- 209 (2355)
Q Consensus 177 ---GF~SrLeeILs~Lpp-------------------nrQILLLSATLS----------------~EI-----LEl---- 209 (2355)
..+..+..++..|.. ..+.+.||-.-. ... ...
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i 310 (913)
T PRK13103 231 DSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHV 310 (913)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHH
Confidence 123333333333311 111222222100 000 000
Q ss_pred ---HHH-h-c-cC-Ceee------ccCC-Cccc-----------------------------------------------
Q psy8497 210 ---LQK-Y-M-VD-PLLI------RPED-ATRP----------------------------------------------- 228 (2355)
Q Consensus 210 ---LkK-f-L-rd-PvII------rVes-ee~~----------------------------------------------- 228 (2355)
+.. + + .+ .+++ .+.. ....
T Consensus 311 ~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGM 390 (913)
T PRK13103 311 YAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGM 390 (913)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccC
Confidence 110 0 0 00 0110 0000 0000
Q ss_pred -------cccc----eEEEEeccCCC---------CCcchhhhHHHHHHHHHh--cCCCCeEEEEEcccccHHHHHHHHH
Q psy8497 229 -------LLGV----KQLVALIPECK---------NPSLRYVDEEKKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLA 286 (2355)
Q Consensus 229 -------~seV----rQvVvqVpe~k---------n~sLt~lsKkeaLLqLLe--rl~kgRVLVFSQTRKmAEiLADyLr 286 (2355)
...+ ..-+..+|..+ ..+.+...+..++.+.+. ...+.+|||-+.++...+.|...|.
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~ 470 (913)
T PRK13103 391 TGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLK 470 (913)
T ss_pred CCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH
Confidence 0000 01122222111 011122233344433332 2235699999999999999999999
Q ss_pred hcCCccEEeeCCCCHHHHHHHHHHHhCCC-ccEEEEecccccccCCC---------------------------------
Q psy8497 287 NANFGAEYLSGAQDQKARLASLDSFKRGK-VRILVTTDLAARGIDAA--------------------------------- 332 (2355)
Q Consensus 287 ErGIKVarLHGgMSqEERqeILErFRSGE-IdVLVSTSALGEGLDLP--------------------------------- 332 (2355)
..++...+|.......|-..+ . ..|. -.|.|||+++|+|-||.
T Consensus 471 ~~gi~h~VLNAk~~~~EA~II-a--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 547 (913)
T PRK13103 471 KEGIEHKVLNAKYHEKEAEII-A--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQ 547 (913)
T ss_pred HcCCcHHHhccccchhHHHHH-H--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHH
Confidence 999998888876543333332 2 3453 46999999999999984
Q ss_pred ----CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 333 ----NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 333 ----aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
.==+||....+-|..-..|..|||||.|.+|.+..|++-++.-+
T Consensus 548 V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 548 VIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 11268888899999999999999999999999999997765544
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.5e-15 Score=179.27 Aligned_cols=312 Identities=18% Similarity=0.229 Sum_probs=201.2
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh-cCCCCCeEEEEcccHHHHHHHHHHHHH-HhcccC
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-LPVQQPQTIILAPTREIAVQITDVVRS-VGAHVK 118 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e-kr~qggRVLILVPTRALAqQ~anwLRE-Fgk~AP 118 (2355)
+......+.+.+..|..++-+||+++||+|||.+... +|.+ .-...+-+-+.-|.++.|.-++..+.+ +...+
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~Q----yL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l- 428 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQ----YLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTL- 428 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHH----HHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcc-
Confidence 3455677888888888888899999999999954322 2222 123445566666999999888877765 43222
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccChHHHHHHHHHhCCCCceEEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~GF~SrLeeILs~LppnrQILL 197 (2355)
+-.|.+.+--..... ...-|-++|-+.|+.-..... .+..+.+||+||||. -++....--+.+.+-......++|.
T Consensus 429 G~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred ccccceEEEeeecCC--CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEE
Confidence 333333222211111 224588899888765443332 367889999999994 4444433333333333445789999
Q ss_pred EEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhh-HHHHHHHHHhcCCCCeEEEEEcccc
Q psy8497 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD-EEKKLVQLLSQTPFNQCVIFSNYQL 276 (2355)
Q Consensus 198 LSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ls-KkeaLLqLLerl~kgRVLVFSQTRK 276 (2355)
+|||+.. +.+..|+.+.-.+.++....+ +..++...+ ...|+. .....+++-.....+-+|||...+.
T Consensus 506 tSATm~a---~kf~nfFgn~p~f~IpGRTyP---V~~~~~k~p-----~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 506 TSATMDA---QKFSNFFGNCPQFTIPGRTYP---VEIMYTKTP-----VEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred eeccccH---HHHHHHhCCCceeeecCCccc---eEEEeccCc-----hHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 9999873 334444443333333332222 222222111 111221 1233344444445578999999888
Q ss_pred cHHHHHHHHHh----c------CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEe------
Q psy8497 277 RPEVICENLAN----A------NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINL------ 340 (2355)
Q Consensus 277 mAEiLADyLrE----r------GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIy------ 340 (2355)
.++-.+..+.. . ++.+..|++.|+..-+.++++.--.|.-+++|||++++..|.+|.+.+||-.
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 77655555443 2 5789999999999999888877777888999999999999999999999922
Q ss_pred --c----------CCCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 341 --E----------IPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 341 --D----------SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
+ .|.|..+--||.|||||. .+|.|+.+++..
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 2 244777888999999995 578999888654
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=147.80 Aligned_cols=117 Identities=34% Similarity=0.582 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccccc
Q psy8497 252 EEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGI 329 (2355)
Q Consensus 252 KkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGL 329 (2355)
+...+..++... ...++|||+++...++.++++|...+..+.++||+++..+|..+++.|+++...|||+|.++++|+
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~ 92 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCc
Confidence 344455555544 357999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEE
Q psy8497 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITI 368 (2355)
Q Consensus 330 DLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVL 368 (2355)
|+|.+++||+++.++++..++|++||++|.|+.+.+++|
T Consensus 93 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999998877654
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=178.93 Aligned_cols=305 Identities=20% Similarity=0.280 Sum_probs=190.2
Q ss_pred HHHHHcCCcEEEEccCCchHHHHHHHHHHHHH-H--hcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEE--E
Q psy8497 52 FPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL-I--KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYF--I 126 (2355)
Q Consensus 52 Ln~LLSGRNVILAAPTGSGKTLVALIAILerL-~--ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvy--t 126 (2355)
+..|..+--+|||++||+|||.+ +.-+|... . +.....+-+-|.-|.+..|.-+...+..-...+ +-.|.+. +
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTTQ-vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYqIRf 342 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTTQ-VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQIRF 342 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCcccc-chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEEEEe
Confidence 33344444599999999999954 33332211 1 111224567788899988877766655432222 2222221 1
Q ss_pred CCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh-ccc----ChHHHHHHHHHhCCC------CceE
Q psy8497 127 GGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL-INT----GFVEDITWIYSQLPP------MKQM 195 (2355)
Q Consensus 127 GGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL-kN~----GF~SrLeeILs~Lpp------nrQI 195 (2355)
.+. ......|.++|-+.|+.-+..+++ +..+.+|||||||.- ++. |..+++..+...+.. ..++
T Consensus 343 d~t----i~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKL 417 (1172)
T KOG0926|consen 343 DGT----IGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKL 417 (1172)
T ss_pred ccc----cCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeE
Confidence 111 122367999999999888877765 789999999999952 222 234444444444333 4678
Q ss_pred EEEEeccChhHHHHHHHhc-cCCeeeccCCCccccccceEEEEeccCCCCCcchhh-hHHHHHHHHHhcCCCCeEEEEEc
Q psy8497 196 LVVSATYSHDNLATLQKYM-VDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYV-DEEKKLVQLLSQTPFNQCVIFSN 273 (2355)
Q Consensus 196 LLLSATLS~EILElLkKfL-rdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~l-sKkeaLLqLLerl~kgRVLVFSQ 273 (2355)
|+||||+.-.....-.+++ ..|-++.+. .+|+.+.+...+.....|+ ......+.+....+.+.+|||+.
T Consensus 418 IIMSATLRVsDFtenk~LFpi~pPlikVd--------ARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 418 IIMSATLRVSDFTENKRLFPIPPPLIKVD--------ARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVT 489 (1172)
T ss_pred EEEeeeEEecccccCceecCCCCceeeee--------cccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEe
Confidence 9999998743322111111 111122222 2333333333333333333 33466777788888899999999
Q ss_pred ccccHHHHHHHHHhcC----------------------------------------------------------------
Q psy8497 274 YQLRPEVICENLANAN---------------------------------------------------------------- 289 (2355)
Q Consensus 274 TRKmAEiLADyLrErG---------------------------------------------------------------- 289 (2355)
.+..++.|+..|++..
T Consensus 490 GQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~ 569 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFN 569 (1172)
T ss_pred ChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhh
Confidence 9999999999998631
Q ss_pred -----------------------------------CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc
Q psy8497 290 -----------------------------------FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334 (2355)
Q Consensus 290 -----------------------------------IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV 334 (2355)
+-+..|++-++.+.+.++++.--.|.-=++|+|++++..|.||.+
T Consensus 570 ~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgI 649 (1172)
T KOG0926|consen 570 ALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGI 649 (1172)
T ss_pred ccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCe
Confidence 113334445555555555555445665689999999999999999
Q ss_pred cEEE--------EecCCC----------CHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 335 DLVI--------NLEIPH----------DAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 335 DTVI--------IyDSP~----------SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
..|| .||.-. |..+--||+|||||+| +|.|+.+++..
T Consensus 650 kYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 650 KYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred eEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999 444432 4556679999999975 68999888653
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-15 Score=152.72 Aligned_cols=149 Identities=21% Similarity=0.250 Sum_probs=100.6
Q ss_pred CCcHHHHHHHHHHHc-------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 43 KESPIQMAAFPYVLN-------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 43 eLRPYQeEALn~LLS-------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
+|+++|.+++..+.. ...++|.+|||+|||++++.++. .+.. ++|||||+..|+.|+.+.+..+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~-~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALIL-ELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHH-HHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhh-cccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 689999999999884 57799999999999988875444 4441 899999999999999999977754
Q ss_pred ccCCcEEEEEECCcc--------------ccCCCCCCcEEEECHHHHHHHHHhh-----------cccCcCceEEEeccc
Q psy8497 116 HVKNLHVDYFIGGTQ--------------VERPKRPVQIVVGSPGRIKQMIKLK-----------YLNMDSVRLFIMDEA 170 (2355)
Q Consensus 116 ~APgLrVVvytGGkq--------------~rkqirq~DILVTTPErLLDLLdrr-----------~LdLSkIdLLIVDEA 170 (2355)
............... ........+|+++|++.|....... ......+++||||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 431111110000000 0011223789999999998765431 123456789999999
Q ss_pred chhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 171 DKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 171 HRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
|++....- +..++. .....+|+|||||.
T Consensus 156 H~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 99875431 334444 45678999999986
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=177.99 Aligned_cols=118 Identities=16% Similarity=0.158 Sum_probs=88.2
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC--ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF--GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGI--KVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
..|..++... .+++|||+.+.++++.+++.|..... .+..+.-++....|..+++.|+.+.-.||++|....+|||+
T Consensus 742 ~~i~~l~~~~-~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~ 820 (928)
T PRK08074 742 AYIAKIAKAT-KGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDI 820 (928)
T ss_pred HHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCcccc
Confidence 4444444433 46999999999999999999976432 23344445555678999999999888899999999999999
Q ss_pred CCc--cEEEEecCCCC-H-----------------------------hHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 332 ANV--DLVINLEIPHD-A-----------------------------ATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 332 PaV--DTVIIyDSP~S-P-----------------------------qSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
|.- .+||+...|+. | ..+.|.+||+-|...+..+|++++..
T Consensus 821 pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 821 PGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred CCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 984 78999998872 1 13469999999977665566666543
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=137.37 Aligned_cols=140 Identities=33% Similarity=0.544 Sum_probs=106.5
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----C
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----P 134 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----q 134 (2355)
++++|.+|||+|||.+++..+...+.. ...+++||++|+..|+.|+.+.+..+... .+.+..+.+...... .
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~--~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS--LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc--ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh
Confidence 368999999999999888777766553 34678999999999999999988887643 466777776654332 2
Q ss_pred CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 135 irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATL 202 (2355)
....+|+|+|++.+...+.........+++|||||+|.+....+...............+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 34589999999998877765544566788999999999887664443333445556778999999997
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=182.73 Aligned_cols=354 Identities=17% Similarity=0.246 Sum_probs=236.8
Q ss_pred CCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHH-HHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAV-QITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAq-Q~anwLREFgk~APgL 120 (2355)
...|+|.++++-++.. .+++|++|+|+|||+|+-++++. +....++++++|.-+++. |...|.++|..- -++
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~ 1216 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGL 1216 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCc
Confidence 3488999999998874 56999999999999999888875 466789999999999884 455677777655 589
Q ss_pred EEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC------hHHHHHHHHHhCCCCc
Q psy8497 121 HVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG------FVEDITWIYSQLPPMK 193 (2355)
Q Consensus 121 rVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G------F~SrLeeILs~Lppnr 193 (2355)
.++.++|...... .++..+|+|+||+.+..+ + ..+.+++.|+||.|.+.... ..+ +..|...+....
T Consensus 1217 ~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~i 1290 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKI 1290 (1674)
T ss_pred eEEecCCccccchHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhhe
Confidence 9999999877653 345589999999998555 2 67889999999999877322 123 667777777888
Q ss_pred eEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcC-CCCeEEEEE
Q psy8497 194 QMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT-PFNQCVIFS 272 (2355)
Q Consensus 194 QILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl-~kgRVLVFS 272 (2355)
+++.+|..+... ...+. +...-++.......+.+...+ +.-+................+..+.... ...+.|||+
T Consensus 1291 r~v~ls~~lana-~d~ig--~s~~~v~Nf~p~~R~~Pl~i~-i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~ 1366 (1674)
T KOG0951|consen 1291 RVVALSSSLANA-RDLIG--ASSSGVFNFSPSVRPVPLEIH-IQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFL 1366 (1674)
T ss_pred eEEEeehhhccc-hhhcc--ccccceeecCcccCCCceeEE-EEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEe
Confidence 999999877632 22211 111222222222222222222 2222222111111122222222222222 235899999
Q ss_pred cccccHHHHHHHHHhc----------------------CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccC
Q psy8497 273 NYQLRPEVICENLANA----------------------NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGID 330 (2355)
Q Consensus 273 QTRKmAEiLADyLrEr----------------------GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLD 330 (2355)
++++.+..++..|-.. -++..+-|-+|+..+...+-..|..|.+.|+|...- ..|+-
T Consensus 1367 p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~ 1445 (1674)
T KOG0951|consen 1367 PTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTK 1445 (1674)
T ss_pred ccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccc
Confidence 9999987766554321 122222288999999999999999999999998877 88888
Q ss_pred CCCccEEEEec-----------CCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh---------hcccccc
Q psy8497 331 AANVDLVINLE-----------IPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE---------INLDHAF 390 (2355)
Q Consensus 331 LPaVDTVIIyD-----------SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe---------LKLKLaL 390 (2355)
+. +++||.++ .|++...++|++|+|+| .++||+++.......++++..+ .-+...+
T Consensus 1446 ~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~ 1521 (1674)
T KOG0951|consen 1446 LK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNF 1521 (1674)
T ss_pred cc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhh
Confidence 74 45555333 34578999999999999 5688888888777777666321 1222244
Q ss_pred ccCCCccchhhhh-----hhHHHHHHHHHhCC
Q psy8497 391 NVGLVPDNLTGDQ-----INWTQRVQTLLAKP 417 (2355)
Q Consensus 391 e~eIVPkgLlKeq-----iDw~~~LERILKnP 417 (2355)
..+++...+...+ .+|.+.++++..+|
T Consensus 1522 n~ei~~~tienkqd~vd~lt~s~~yrr~~~np 1553 (1674)
T KOG0951|consen 1522 NAEIVTKTIENKQDAVDYLTWSFMYRRLPQNP 1553 (1674)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccccCc
Confidence 5555555555554 67788888888777
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.8e-13 Score=169.98 Aligned_cols=327 Identities=16% Similarity=0.154 Sum_probs=205.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+.-.|..|+ |..+.||-|||+++++|++.... .+..|-||+....||..=.+|+..+..++
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL----~GkgVhVVTvNdYLA~RDae~mg~vy~fL- 146 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNAL----TGKGVIVSTVNEYLAERDAEEMGKVFNFL- 146 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHh----cCCceEEEecchhhhhhhHHHHHHHHHHh-
Confidence 465 88999999887777664 89999999999999987754322 36778999999999999999999998888
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHHH-HHHHhh------cccCcCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRIK-QMIKLK------YLNMDSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErLL-DLLdrr------~LdLSkIdLLIVDEAHRLk-N~------------ 176 (2355)
++.|.++..+.... ...-.++|+++|...|- ++|+.. ..-.+.+.+.||||++.++ +.
T Consensus 147 GLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~ 226 (925)
T PRK12903 147 GLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQS 226 (925)
T ss_pred CCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCc
Confidence 99998887653322 23344899999987542 344322 1234778899999999754 21
Q ss_pred ---ChHHHHHHHHHhCCC-------CceEEEEEeccC--------------h-------hHHHHHHH--hcc-C-Ceee-
Q psy8497 177 ---GFVEDITWIYSQLPP-------MKQMLVVSATYS--------------H-------DNLATLQK--YMV-D-PLLI- 220 (2355)
Q Consensus 177 ---GF~SrLeeILs~Lpp-------nrQILLLSATLS--------------~-------EILElLkK--fLr-d-PvII- 220 (2355)
.++..+..++..+.. ..+.+.||..-. . .+...+.. ++. + .+++
T Consensus 227 ~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~ 306 (925)
T PRK12903 227 NDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVR 306 (925)
T ss_pred cchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 134444444444432 112233332100 0 00000100 000 0 0000
Q ss_pred -----ccCC-Ccc--------------------------------------------------c----ccc----ceEEE
Q psy8497 221 -----RPED-ATR--------------------------------------------------P----LLG----VKQLV 236 (2355)
Q Consensus 221 -----rVes-ee~--------------------------------------------------~----~se----VrQvV 236 (2355)
.+.. ... . ... ...-+
T Consensus 307 dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~V 386 (925)
T PRK12903 307 DGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRV 386 (925)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCE
Confidence 0000 000 0 000 00111
Q ss_pred EeccCCC---------CCcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHH
Q psy8497 237 ALIPECK---------NPSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305 (2355)
Q Consensus 237 vqVpe~k---------n~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERq 305 (2355)
..+|... ..+.+...+..++...+.. ..+.+|||.|.++...+.|...|...|+...+|+..-...|-.
T Consensus 387 v~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~ 466 (925)
T PRK12903 387 NVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAE 466 (925)
T ss_pred EECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHH
Confidence 2222111 1111222333444443321 2456999999999999999999999999999999864433322
Q ss_pred HHHHHHhCCC-ccEEEEecccccccCCCCcc--------EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 306 ASLDSFKRGK-VRILVTTDLAARGIDAANVD--------LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 306 eILErFRSGE-IdVLVSTSALGEGLDLPaVD--------TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
++. ..|. -.|.|||+++|+|.||.--. +||....+-|..-.-|..|||||.|.+|.+..|++-.+.-+
T Consensus 467 -IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~ 543 (925)
T PRK12903 467 -IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLF 543 (925)
T ss_pred -HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHH
Confidence 222 3554 46999999999999986433 79999999999999999999999999999988887665443
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=166.94 Aligned_cols=271 Identities=19% Similarity=0.243 Sum_probs=180.3
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC--CCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK--RPV 138 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi--rq~ 138 (2355)
++-++||.+|||.-+ |+.+.. .+.-+|.-|++.||.++++.+.+. ++.+.+++|.+...... ..+
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~----aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~~~~a 260 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS----AKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDNGNPA 260 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh----hccceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCCCCcc
Confidence 455899999999554 444442 445699999999999999999887 56778888876544322 237
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC-CCceEEEEEeccChhHHHHHHHhcc--
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQMLVVSATYSHDNLATLQKYMV-- 215 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-pnrQILLLSATLS~EILElLkKfLr-- 215 (2355)
..+-+|.|++ . .-..+++.||||+++|.+...+-.+...+-.+. .... |.+-+. ++.+....+.
T Consensus 261 ~hvScTVEM~-------s-v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiH---LCGeps--vldlV~~i~k~T 327 (700)
T KOG0953|consen 261 QHVSCTVEMV-------S-VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIH---LCGEPS--VLDLVRKILKMT 327 (700)
T ss_pred cceEEEEEEe-------e-cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhh---ccCCch--HHHHHHHHHhhc
Confidence 7888898876 1 135678999999999998775444444333321 1111 222222 3334443322
Q ss_pred -CCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCc-cE
Q psy8497 216 -DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFG-AE 293 (2355)
Q Consensus 216 -dPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIK-Va 293 (2355)
+.+.+ ..+..+-+- ...+.++.-+...+.+-+|| |-+++.+-.+...+.+.+.. ++
T Consensus 328 Gd~vev------------~~YeRl~pL---------~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 328 GDDVEV------------REYERLSPL---------VVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred CCeeEE------------EeecccCcc---------eehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceE
Confidence 11111 111111111 11123455555555566654 33577778888888888765 99
Q ss_pred EeeCCCCHHHHHHHHHHHhC--CCccEEEEecccccccCCCCccEEEEecCC---------CCHhHHHHHhhccCCCCC-
Q psy8497 294 YLSGAQDQKARLASLDSFKR--GKVRILVTTDLAARGIDAANVDLVINLEIP---------HDAATYLHRMGRAGRYGT- 361 (2355)
Q Consensus 294 rLHGgMSqEERqeILErFRS--GEIdVLVSTSALGEGLDLPaVDTVIIyDSP---------~SPqSYIQRIGRAGRiGQ- 361 (2355)
+|+|+++++.|.+--..|++ ++++|||||+++++|||| .++-||+++.- .+..+..|.+|||||.|.
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999997 899999999999999999 67888888765 367899999999999872
Q ss_pred --ccEEEEEEcccCHHHHHHHH
Q psy8497 362 --RGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 362 --kGkVIVLVSsdDVEeIEsLr 381 (2355)
.|.|-.+. ..+...+..++
T Consensus 465 ~~~G~vTtl~-~eDL~~L~~~l 485 (700)
T KOG0953|consen 465 YPQGEVTTLH-SEDLKLLKRIL 485 (700)
T ss_pred CcCceEEEee-HhhHHHHHHHH
Confidence 34444443 33444444444
|
|
| >KOG1016|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-14 Score=172.79 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=102.9
Q ss_pred CeEEEEEcccccHHHHHHHHHhc------------------CCccEEeeCCCCHHHHHHHHHHHhCCC---ccEEEEecc
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA------------------NFGAEYLSGAQDQKARLASLDSFKRGK---VRILVTTDL 324 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr------------------GIKVarLHGgMSqEERqeILErFRSGE---IdVLVSTSA 324 (2355)
.++|||++....++.|.+.|..+ ...+.+++|..+..+|.++|+.|++.- .-|||+|++
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 47899999999999999999874 245778999999999999999999642 358999999
Q ss_pred cccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 325 LGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+..||||-.++-+|+||.-|++--.+|++-|+.|.|+...|++|....+..+.++|..
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIyd 857 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYD 857 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999888777777666643
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-14 Score=170.04 Aligned_cols=336 Identities=13% Similarity=0.051 Sum_probs=222.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
+...++..--.....+|.++++++-+|+++++.-.|.+||.+++.++....+.. .....++++.|+.++++.....+.
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL--CHATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc--CcccceecchhHHHHhhccCCceE
Confidence 333444444457789999999999999999999999999999999888776653 345568999999999765444332
Q ss_pred HHhcccCCc---EEEEEECCccccCC---CCCCcEEEECHHHHHHHHHhhcccC----cCceEEEecccchhcccChHHH
Q psy8497 112 SVGAHVKNL---HVDYFIGGTQVERP---KRPVQIVVGSPGRIKQMIKLKYLNM----DSVRLFIMDEADKLINTGFVED 181 (2355)
Q Consensus 112 EFgk~APgL---rVVvytGGkq~rkq---irq~DILVTTPErLLDLLdrr~LdL----SkIdLLIVDEAHRLkN~GF~Sr 181 (2355)
-.....|.+ -|.++.|....... ....++|++.|.++........+.+ -...++++||+|..+-. +.+.
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~ 431 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKAL 431 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhH
Confidence 221112211 22333333322211 1227899999998765544333333 23347899999976533 2222
Q ss_pred H----HHHHH---hC--CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcch----
Q psy8497 182 I----TWIYS---QL--PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR---- 248 (2355)
Q Consensus 182 L----eeILs---~L--ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt---- 248 (2355)
+ ..++. .+ ....|++-.+||+.....-....+-...+. .......+...+.++.|.|...-....
T Consensus 432 ~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~--Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 432 AQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELE--LVTIDGSPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceE--EEEecCCCCccceEEEeCCCCCCcchhhhhh
Confidence 2 12221 11 345788888999876655444433222222 222233445566777776654322211
Q ss_pred h-hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC--------ccEEeeCCCCHHHHHHHHHHHhCCCccEE
Q psy8497 249 Y-VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF--------GAEYLSGAQDQKARLASLDSFKRGKVRIL 319 (2355)
Q Consensus 249 ~-lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGI--------KVarLHGgMSqEERqeILErFRSGEIdVL 319 (2355)
. ......+.+++... -|+|.||..++.|+.|....++.-+ .+.-+.|+...++|.++...+--|.+.-+
T Consensus 510 ~i~E~s~~~~~~i~~~--~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~gi 587 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHG--LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGI 587 (1034)
T ss_pred HHHHHHHHHHHHHHcC--CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEE
Confidence 1 11223344444332 5999999999999887666554321 23446689999999999999999999999
Q ss_pred EEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 320 VSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|+|++++.||||...+.|+.+..|.|..++.|..|||||.+++...++++....+
T Consensus 588 IaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PV 642 (1034)
T KOG4150|consen 588 IATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPV 642 (1034)
T ss_pred EecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccch
Confidence 9999999999999999999999999999999999999999988876666644333
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-14 Score=133.42 Aligned_cols=78 Identities=33% Similarity=0.612 Sum_probs=75.7
Q ss_pred HHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCC
Q psy8497 283 ENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360 (2355)
Q Consensus 283 DyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG 360 (2355)
++|...++.+..+||+|+..+|..+++.|+.+...|||||+++++|||+|.+++||++++|+++..|+|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999976
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-12 Score=159.90 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC----CCccEEEEecccccc
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR----GKVRILVTTDLAARG 328 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS----GEIdVLVSTSALGEG 328 (2355)
...+..++.... +++||.+.+.++++.+++.|...---..++.|..+ .+..+++.|+. +.-.||++|..+.+|
T Consensus 459 ~~~~~~~~~~~~-G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 459 SLSTAAILRKAQ-GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHHHcC-CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 355666665543 58888888999999999999763222344555432 45678889987 468899999999999
Q ss_pred cCC----------CCccEEEEecCCCCH-------------------------hHHHHHhhccCCCCCc--cEEEEEEc
Q psy8497 329 IDA----------ANVDLVINLEIPHDA-------------------------ATYLHRMGRAGRYGTR--GLVITIVS 370 (2355)
Q Consensus 329 LDL----------PaVDTVIIyDSP~SP-------------------------qSYIQRIGRAGRiGQk--GkVIVLVS 370 (2355)
||+ ..+++|||.-.||.+ ..+.|.+||.-|...+ ..+|++++
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD 614 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLD 614 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEe
Confidence 999 238899999999732 2345777887776554 44444444
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >KOG0383|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.1e-16 Score=192.43 Aligned_cols=276 Identities=20% Similarity=0.229 Sum_probs=182.6
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
..|.+||.++++|+.. +.++|++++||+|||++ .+.++..+.......+++|+++|..+. .+|-+++..|+
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVq-si~fl~sl~~~~~~~~P~Lv~ap~sT~----~nwe~e~~~wa 368 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQ-SIVFLYSLPKEIHSPGPPLVVAPLSTI----VNWEREFELWA 368 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceee-EEEEEeecccccCCCCCceeeccCccc----cCCCCchhccC
Confidence 4789999999999874 57899999999999954 444554555444456789999999999 78888899999
Q ss_pred CCcEEEEEECCccccCCCC--------------------------CCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 118 KNLHVDYFIGGTQVERPKR--------------------------PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqir--------------------------q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
|.+.++.+.|....+..++ .+++++++|++.. +....+....|.++|+||+|
T Consensus 369 p~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~--~~~~il~~v~w~~livde~~ 446 (696)
T KOG0383|consen 369 PSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIE--IDQSILFSVQWGLLIVDEAH 446 (696)
T ss_pred CCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcc--cCHHHHhhhhcceeEeechh
Confidence 9999999998865432111 1788999998762 22234446678899999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccC--Ceeec----------------------------
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVD--PLLIR---------------------------- 221 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrd--PvIIr---------------------------- 221 (2355)
++.+.. +.....+...+... -++++.|+.++....+...|.- +..+.
T Consensus 447 rlkn~~--s~~f~~l~~~~~~~-~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l~~p~ 523 (696)
T KOG0383|consen 447 RLKNKQ--SKRFRVLTAYPIDS-KLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLLLCPH 523 (696)
T ss_pred hcccch--hhhhhhccccccch-hhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccccCch
Confidence 999765 44444555443333 3566777766655555443310 00000
Q ss_pred ------cCCCccccccceEEEEe-c-----------------------------------------------cCCCCCcc
Q psy8497 222 ------PEDATRPLLGVKQLVAL-I-----------------------------------------------PECKNPSL 247 (2355)
Q Consensus 222 ------Vesee~~~seVrQvVvq-V-----------------------------------------------pe~kn~sL 247 (2355)
.+...........+..+ + .+......
T Consensus 524 ~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~ 603 (696)
T KOG0383|consen 524 MLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEEPLEENG 603 (696)
T ss_pred hhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcCcccCccccccccch
Confidence 00000000000000000 0 00000000
Q ss_pred hh--------hhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC---C
Q psy8497 248 RY--------VDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR---G 314 (2355)
Q Consensus 248 t~--------lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS---G 314 (2355)
.+ ..++..|+..+... ..+|||||++++++++.|.+++...+ .+.+++|.....+|+.++.+|+. .
T Consensus 604 ~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~ 682 (696)
T KOG0383|consen 604 EYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSN 682 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCcc
Confidence 00 11222233333222 35799999999999999999999999 99999999999999999999994 5
Q ss_pred CccEEEEecccccc
Q psy8497 315 KVRILVTTDLAARG 328 (2355)
Q Consensus 315 EIdVLVSTSALGEG 328 (2355)
.+++|+||++++.|
T Consensus 683 ~~cfllstra~g~g 696 (696)
T KOG0383|consen 683 QFCFLLSTRAGGLG 696 (696)
T ss_pred ceEEEeecccccCC
Confidence 78999999999887
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=152.52 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=101.3
Q ss_pred HHHHHHHHHHcC-------------CcEEEEccCCchHHHHHHHHHHHHHHhcCCC--CCeEEEEcccHHHHHHHHHHHH
Q psy8497 47 IQMAAFPYVLNG-------------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ--QPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 47 YQeEALn~LLSG-------------RNVILAAPTGSGKTLVALIAILerL~ekr~q--ggRVLILVPTRALAqQ~anwLR 111 (2355)
||.+++.|++.. +.+||+++||+|||++++.. +..+...... ..++|||||. .+..||...+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~-~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIAL-ISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHH-HHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhh-hhhhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 799999998643 45999999999999776644 4444432221 2359999999 67688888888
Q ss_pred HHhcccCCcEEEEEECCc----cccCCCCCCcEEEECHHHHHHH---HHhhcccCcCceEEEecccchhcccChHHHHHH
Q psy8497 112 SVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVGSPGRIKQM---IKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGk----q~rkqirq~DILVTTPErLLDL---Ldrr~LdLSkIdLLIVDEAHRLkN~GF~SrLee 184 (2355)
++.... .+++..+.|.. .........+|+|+||+.+... .....+....|++|||||+|.+.+.. .....
T Consensus 79 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~ 155 (299)
T PF00176_consen 79 KWFDPD-SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYK 155 (299)
T ss_dssp HHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHH
T ss_pred cccccc-cccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccc
Confidence 886432 56888888776 1122344589999999999710 11122223559999999999997654 55555
Q ss_pred HHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 185 IYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 185 ILs~LppnrQILLLSATLS~EILElLk 211 (2355)
.+..+. ...+++|||||..+....+.
T Consensus 156 ~l~~l~-~~~~~lLSgTP~~n~~~dl~ 181 (299)
T PF00176_consen 156 ALRKLR-ARYRWLLSGTPIQNSLEDLY 181 (299)
T ss_dssp HHHCCC-ECEEEEE-SS-SSSGSHHHH
T ss_pred cccccc-cceEEeeccccccccccccc
Confidence 555565 67788999998876544333
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-12 Score=163.51 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=95.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+.-.+.+ .-|..+.||.|||++++++++.... .+..|.||+++..||.+-.+|+..+..++
T Consensus 73 lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL----~G~~VhVvT~NdyLA~RD~e~m~pvy~~L- 144 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNAL----TGKGVHIVTVNDYLAKRDQEWMGQIYRFL- 144 (870)
T ss_pred hCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHh----cCCceEEEeCCHHHHHHHHHHHHHHHHHc-
Confidence 566 688999887766654 4699999999999999888753322 36779999999999999999999999888
Q ss_pred CcEEEEEECCccccC--CCCCCcEEEECHHHHH-HHHHhh------cccCcCceEEEecccchhc
Q psy8497 119 NLHVDYFIGGTQVER--PKRPVQIVVGSPGRIK-QMIKLK------YLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--qirq~DILVTTPErLL-DLLdrr------~LdLSkIdLLIVDEAHRLk 174 (2355)
++.|.++.++..... ..-.++|+++|...|- ++|+.. ....+.+.++||||++.++
T Consensus 145 GLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 899998877654332 2334899999986432 333221 1234678899999999754
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=164.71 Aligned_cols=288 Identities=11% Similarity=0.082 Sum_probs=176.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC-------
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER------- 133 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk------- 133 (2355)
.|+.+.+|+|||.+|+-++-..|. .++.+|||+|...|+.|+...|++.+. ...++++++......
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~----~Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLR----AGRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHH----cCCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHH
Confidence 344455699999999988877776 377899999999999999999998763 245777777644321
Q ss_pred -CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc--ccC---hHHHHHHHHHhCCCCceEEEEEeccChhHH
Q psy8497 134 -PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI--NTG---FVEDITWIYSQLPPMKQMLVVSATYSHDNL 207 (2355)
Q Consensus 134 -qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk--N~G---F~SrLeeILs~LppnrQILLLSATLS~EIL 207 (2355)
......|||+|...+ +..+.++++|||||-|--. +.. |..+-..++........+|+.|||++-+..
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 123378999998877 6678899999999999532 221 223323333333457889999999996655
Q ss_pred HHHHHhccCCeeeccCCCccccccceEEEEecc-CC-CC----CcchhhhHHHHHHHHHhcCCCCeEEEEEcccc-----
Q psy8497 208 ATLQKYMVDPLLIRPEDATRPLLGVKQLVALIP-EC-KN----PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQL----- 276 (2355)
Q Consensus 208 ElLkKfLrdPvIIrVesee~~~seVrQvVvqVp-e~-kn----~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRK----- 276 (2355)
.....-..................+ .++..-. .. .+ ...........+.+.|.. ++||||.+.+-
T Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~P~v-~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~---gqvll~lnRrGyap~l 384 (665)
T PRK14873 309 ALVESGWAHDLVAPRPVVRARAPRV-RALGDSGLALERDPAARAARLPSLAFRAARDALEH---GPVLVQVPRRGYVPSL 384 (665)
T ss_pred HHHhcCcceeeccccccccCCCCeE-EEEeCchhhhccccccccCccCHHHHHHHHHHHhc---CcEEEEecCCCCCCee
Confidence 4433211110000000000111111 1111100 00 00 001222334555555543 27888777321
Q ss_pred ------------------------------------------------------cHHHHHHHHHhc--CCccEEeeCCCC
Q psy8497 277 ------------------------------------------------------RPEVICENLANA--NFGAEYLSGAQD 300 (2355)
Q Consensus 277 ------------------------------------------------------mAEiLADyLrEr--GIKVarLHGgMS 300 (2355)
-.+.+++.|... +..+.++++
T Consensus 385 ~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~--- 461 (665)
T PRK14873 385 ACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGG--- 461 (665)
T ss_pred EhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEECh---
Confidence 124555555554 234455443
Q ss_pred HHHHHHHHHHHhCCCccEEEEec----ccccccCCCCccEEEEecCCC------------CHhHHHHHhhccCCCCCccE
Q psy8497 301 QKARLASLDSFKRGKVRILVTTD----LAARGIDAANVDLVINLEIPH------------DAATYLHRMGRAGRYGTRGL 364 (2355)
Q Consensus 301 qEERqeILErFRSGEIdVLVSTS----ALGEGLDLPaVDTVIIyDSP~------------SPqSYIQRIGRAGRiGQkGk 364 (2355)
..+++.|. ++.+|||+|+ ++. +.+++|+++|.+. ..+.+.|.+|||||....|.
T Consensus 462 ----d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~ 531 (665)
T PRK14873 462 ----DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQ 531 (665)
T ss_pred ----HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCE
Confidence 24788886 5899999999 554 3678899888773 35678999999999888999
Q ss_pred EEEEEcccCHHHHHHH
Q psy8497 365 VITIVSAESLVKFHSL 380 (2355)
Q Consensus 365 VIVLVSsdDVEeIEsL 380 (2355)
|++.. ..+...+..+
T Consensus 532 V~iq~-~p~~~~~~~l 546 (665)
T PRK14873 532 VVVVA-ESSLPTVQAL 546 (665)
T ss_pred EEEEe-CCCCHHHHHH
Confidence 99885 4443444444
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-12 Score=154.04 Aligned_cols=319 Identities=16% Similarity=0.190 Sum_probs=198.1
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
+-+|.....++ ..+.|+...-...+.++.+-+..+.+++-+|++++||+|||.+.-...+..... ....|...-|.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~---~~~~v~CTQpr 100 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS---HLTGVACTQPR 100 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh---hccceeecCch
Confidence 55677777777 555555443334566666777777778889999999999997554444444332 12446666799
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHH---------hhcccCcCceEEEeccc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIK---------LKYLNMDSVRLFIMDEA 170 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLd---------rr~LdLSkIdLLIVDEA 170 (2355)
+..+.++...+.+-- ++.+.--+|-. ++.. =.+++.+|+.+.. ... .+..|++||+|||
T Consensus 101 rvaamsva~RVadEM----Dv~lG~EVGys-IrfE------dC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDea 168 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEM----DVTLGEEVGYS-IRFE------DCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEA 168 (699)
T ss_pred HHHHHHHHHHHHHHh----ccccchhcccc-cccc------ccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEechh
Confidence 999999887776532 22221111111 0100 0244554443222 222 3678999999999
Q ss_pred ch-hcccC-hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcch
Q psy8497 171 DK-LINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR 248 (2355)
Q Consensus 171 HR-LkN~G-F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt 248 (2355)
|. .+... ....+..++... +..++|.||||+... .+..|+.++-++.+... .+++.+ +.++....+
T Consensus 169 hERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~----~PvEi~--Yt~e~erDy-- 236 (699)
T KOG0925|consen 169 HERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGT----HPVEIF--YTPEPERDY-- 236 (699)
T ss_pred hhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCCC----CceEEE--ecCCCChhH--
Confidence 94 22222 223334444444 588999999998643 44555555555555431 122222 222221111
Q ss_pred hhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc---------CCccEEeeCCCCHHHHHHHHHHHh---CC--
Q psy8497 249 YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA---------NFGAEYLSGAQDQKARLASLDSFK---RG-- 314 (2355)
Q Consensus 249 ~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr---------GIKVarLHGgMSqEERqeILErFR---SG-- 314 (2355)
.......++++......+-+|||....+.++..++.+... .+++..|+ +.+.+.+++-.- +|
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 2233466677766666789999999999999888888743 25677777 333344333222 12
Q ss_pred CccEEEEecccccccCCCCccEEE------------------EecCCCCHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 315 KVRILVTTDLAARGIDAANVDLVI------------------NLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 315 EIdVLVSTSALGEGLDLPaVDTVI------------------IyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
.-+|+|+|++++..|-++.+.+|| .+-.|.|..+-.||.||||| -.+|+++.++..
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragr-t~pGkcfrLYte 386 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR-TRPGKCFRLYTE 386 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccC-CCCCceEEeecH
Confidence 236999999999999999999998 22245577788899999998 489999999864
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-11 Score=153.55 Aligned_cols=117 Identities=20% Similarity=0.199 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCc-cEEeeCCCCHHHHHHHHHHHhCCCc-cEEEEecccccc
Q psy8497 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFG-AEYLSGAQDQKARLASLDSFKRGKV-RILVTTDLAARG 328 (2355)
Q Consensus 251 sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIK-VarLHGgMSqEERqeILErFRSGEI-dVLVSTSALGEG 328 (2355)
.....|..++...++ ++|||+++-++++.+.+.|...... ....+|.. .+..+++.|..+.- -|||+|..+.+|
T Consensus 466 ~~~~~i~~~~~~~~~-~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EG 541 (654)
T COG1199 466 KLAAYLREILKASPG-GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEG 541 (654)
T ss_pred HHHHHHHHHHhhcCC-CEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCc
Confidence 334566666666554 9999999999999999999976553 33344433 34478888886544 899999999999
Q ss_pred cCCCCc--cEEEEecCCCC------------------------------HhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 329 IDAANV--DLVINLEIPHD------------------------------AATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 329 LDLPaV--DTVIIyDSP~S------------------------------PqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
||+|.- .+||+...|+. ...+.|++||+.|.-.+.-++++++.
T Consensus 542 VD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 542 VDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred ccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 999985 77999998872 23567999999996666666666654
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-11 Score=155.99 Aligned_cols=128 Identities=14% Similarity=0.223 Sum_probs=98.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+--.|.+|+ |..+.||-|||+++.+|++.... .+..|-||+++..||..=.+|+..+..++
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL----~GkgVhVVTvNdYLA~RDae~m~~vy~~L- 153 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNAL----TGKGVHVVTVNDYLARRDAEWMGQVHRFL- 153 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhh----cCCCeEEEeCCHHHHHhHHHHHHHHHHHh-
Confidence 565 78889988877776554 99999999999999888765433 36779999999999999999999999888
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHH-----HHHHHh--hcccCcCceEEEecccchhc
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRI-----KQMIKL--KYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErL-----LDLLdr--r~LdLSkIdLLIVDEAHRLk 174 (2355)
++.|.++.++.... ...-.++|+++|...| .+.+.. .....+.+.++||||++.++
T Consensus 154 GLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 154 GLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99999987754332 2334489999998765 333322 12235778899999999754
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.8e-13 Score=119.74 Aligned_cols=81 Identities=41% Similarity=0.704 Sum_probs=77.5
Q ss_pred HHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC
Q psy8497 280 VICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY 359 (2355)
Q Consensus 280 iLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi 359 (2355)
.+.++|...++.+..+||.|+..+|..+++.|+.+...|||+|+++++|+|+|.+++||++++|+++..++|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy8497 360 G 360 (2355)
Q Consensus 360 G 360 (2355)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-10 Score=146.93 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC-------ccEEeeCCCCHHHHHHHHHHHhC----CCccEEEEe
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF-------GAEYLSGAQDQKARLASLDSFKR----GKVRILVTT 322 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGI-------KVarLHGgMSqEERqeILErFRS----GEIdVLVST 322 (2355)
..|..++... .+.+|||+++-..++.+.+.+...++ +..++-+. ...++..+++.|+. +.-.||+|+
T Consensus 512 ~~i~~~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av 589 (705)
T TIGR00604 512 ELLVEFSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSV 589 (705)
T ss_pred HHHHHHhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEe
Confidence 4444454444 46899999999999999998876432 22333332 22578899999974 445699999
Q ss_pred --cccccccCCCC--ccEEEEecCCC-CH------------------------------hHHHHHhhccCCCCCccEEEE
Q psy8497 323 --DLAARGIDAAN--VDLVINLEIPH-DA------------------------------ATYLHRMGRAGRYGTRGLVIT 367 (2355)
Q Consensus 323 --SALGEGLDLPa--VDTVIIyDSP~-SP------------------------------qSYIQRIGRAGRiGQkGkVIV 367 (2355)
..+.+|||+++ +.+||++..|+ ++ ....|++||+-|.-.+--+|+
T Consensus 590 ~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~ii 669 (705)
T TIGR00604 590 AGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIV 669 (705)
T ss_pred cCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEE
Confidence 78999999998 68899999997 21 234699999999776666777
Q ss_pred EEcc
Q psy8497 368 IVSA 371 (2355)
Q Consensus 368 LVSs 371 (2355)
+++.
T Consensus 670 llD~ 673 (705)
T TIGR00604 670 LLDK 673 (705)
T ss_pred EEeh
Confidence 7654
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-10 Score=146.25 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC----CCccEEEEeccccccc
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR----GKVRILVTTDLAARGI 329 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS----GEIdVLVSTSALGEGL 329 (2355)
..|..++. . .+++|||+.+.++++.+++.|....-.-.++.|. ..|..+++.|++ +.-.||++|....+||
T Consensus 525 ~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGV 599 (697)
T PRK11747 525 EFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGL 599 (697)
T ss_pred HHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccc
Confidence 44555555 3 3468999999999999999987532123444553 356778877763 6677999999999999
Q ss_pred CCCC--ccEEEEecCCCC-H-----------------------------hHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 330 DAAN--VDLVINLEIPHD-A-----------------------------ATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 330 DLPa--VDTVIIyDSP~S-P-----------------------------qSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
|+|. +.+||+...|+. | ..+.|.+||+-|...+..++++++..
T Consensus 600 D~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 600 DLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 9998 688999998862 1 13469999999976665566666543
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=151.31 Aligned_cols=312 Identities=16% Similarity=0.102 Sum_probs=176.8
Q ss_pred CCcHHHHHHHHHHHc--C----C--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 43 KESPIQMAAFPYVLN--G----Y--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 43 eLRPYQeEALn~LLS--G----R--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
.-+.||-+|++.+.. . . -+|-.|.||+|||++=. -|+..|. ....+.++.|..-+|+|..|.-+.+++-.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLs-d~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALR-DDKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhC-CCCCCceEEEEccccceeccchHHHHHhc
Confidence 457899999998864 1 1 26778999999996543 4444554 34556689999999999888888888754
Q ss_pred cccCCcEEEEEECCcccc----------------------C---CCC------------------------------CCc
Q psy8497 115 AHVKNLHVDYFIGGTQVE----------------------R---PKR------------------------------PVQ 139 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~r----------------------k---qir------------------------------q~D 139 (2355)
.-- .-.+++++|+.... . ... ...
T Consensus 486 ~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 486 NLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred CCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 222 34455555542100 0 000 067
Q ss_pred EEEECHHHHHHHHHh---hcccC----cCceEEEecccchhcccChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHH
Q psy8497 140 IVVGSPGRIKQMIKL---KYLNM----DSVRLFIMDEADKLINTGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 140 ILVTTPErLLDLLdr---r~LdL----SkIdLLIVDEAHRLkN~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLk 211 (2355)
|+|+|++.++..... ....+ -.-..|||||+|-+-... ...+..++..+ ....+||+||||+++.....+.
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 999999998765521 11111 112479999999754322 23333333321 1357899999999987766544
Q ss_pred Hhc-----------c---CCeeeccC--CC-c--------------------------cccccceEE--EEeccCCCCCc
Q psy8497 212 KYM-----------V---DPLLIRPE--DA-T--------------------------RPLLGVKQL--VALIPECKNPS 246 (2355)
Q Consensus 212 KfL-----------r---dPvIIrVe--se-e--------------------------~~~seVrQv--VvqVpe~kn~s 246 (2355)
... . .+..|-.. .+ . ....++... +..++......
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 221 1 11111000 00 0 000011111 11111111000
Q ss_pred -chhhh----HHHHHHHHHhcC------CCCe---EEEEEcccccHHHHHHHHHhc----C--CccEEeeCCCCHHHHHH
Q psy8497 247 -LRYVD----EEKKLVQLLSQT------PFNQ---CVIFSNYQLRPEVICENLANA----N--FGAEYLSGAQDQKARLA 306 (2355)
Q Consensus 247 -Lt~ls----KkeaLLqLLerl------~kgR---VLVFSQTRKmAEiLADyLrEr----G--IKVarLHGgMSqEERqe 306 (2355)
..... ....++.+-... ...+ -||-+.++.-+-.++..|... + +.+..+|+...-..|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 00001 112222221111 1122 266677777777777777654 2 34778899987777766
Q ss_pred HHHHH----------------------hC----CCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCC
Q psy8497 307 SLDSF----------------------KR----GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360 (2355)
Q Consensus 307 ILErF----------------------RS----GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG 360 (2355)
+.+.+ .+ +...|+|+|++++.|+|+ +.+.+|. -+.+...++|++||+.|.+
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccc
Confidence 65443 11 366899999999999998 4565553 3456899999999999976
Q ss_pred C
Q psy8497 361 T 361 (2355)
Q Consensus 361 Q 361 (2355)
.
T Consensus 881 ~ 881 (1110)
T TIGR02562 881 L 881 (1110)
T ss_pred c
Confidence 3
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-10 Score=145.12 Aligned_cols=110 Identities=21% Similarity=0.181 Sum_probs=89.8
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCC-ccEEEEecccccccCCC--------Cc
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK-VRILVTTDLAARGIDAA--------NV 334 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGE-IdVLVSTSALGEGLDLP--------aV 334 (2355)
.+.+|||-+.++...+.|...|...|+...+|.......|-..+-+ .|. -.|.|||+++++|-||. .=
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAGRGTDIkLg~~V~e~GG 703 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAGRGTDIKLSPEVKAAGG 703 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcCCCcCcccchhhHHcCC
Confidence 4469999999999999999999999999888887655444433332 343 35999999999999986 22
Q ss_pred cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 335 DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 335 DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
=+||....+-|..-+.|..|||||.|.+|....|++-.+.-+
T Consensus 704 L~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 704 LAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred CEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 468888899999999999999999999999999987665544
|
|
| >KOG1001|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=146.91 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=96.8
Q ss_pred eEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC-CccE-EEEecccccccCCCCccEEEEecCCC
Q psy8497 267 QCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG-KVRI-LVTTDLAARGIDAANVDLVINLEIPH 344 (2355)
Q Consensus 267 RVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG-EIdV-LVSTSALGEGLDLPaVDTVIIyDSP~ 344 (2355)
++|||++.+..+..+.-.|...++.+.++.|.|....|.+.+..|..+ ...| |++..+++.|||+..+.+||+.|+=|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 899999999999999999999999999999999999999999999953 3344 67889999999999999999999999
Q ss_pred CHhHHHHHhhccCCCCCccE--EEEEEcccCHHH
Q psy8497 345 DAATYLHRMGRAGRYGTRGL--VITIVSAESLVK 376 (2355)
Q Consensus 345 SPqSYIQRIGRAGRiGQkGk--VIVLVSsdDVEe 376 (2355)
||...-|+|-||||+|+... |..|+..+++++
T Consensus 621 np~~eeQaidR~hrigq~k~v~v~r~~i~dtvee 654 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEE 654 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeeeeeehhhhccHH
Confidence 99999999999999996554 444555555554
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-08 Score=124.23 Aligned_cols=293 Identities=17% Similarity=0.214 Sum_probs=198.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccC------------C--------------------cEEEEEECCcccc----
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVK------------N--------------------LHVDYFIGGTQVE---- 132 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~AP------------g--------------------LrVVvytGGkq~r---- 132 (2355)
..++||||||++..|.++.+.+.++..... + -...++.|+..+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 357899999999999888888877653310 0 0001111111110
Q ss_pred -----------CCCCCCcEEEECHHHHHHHHHh------hcccCcCceEEEecccchhc--ccChHHHHHHHHHhCCC--
Q psy8497 133 -----------RPKRPVQIVVGSPGRIKQMIKL------KYLNMDSVRLFIMDEADKLI--NTGFVEDITWIYSQLPP-- 191 (2355)
Q Consensus 133 -----------kqirq~DILVTTPErLLDLLdr------r~LdLSkIdLLIVDEAHRLk--N~GF~SrLeeILs~Lpp-- 191 (2355)
......||||++|=-|.-.+.. ..-.++.+.++|||.++.|. ||.+...+...+...|.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 0111279999999888766653 34457899999999999876 33333333333333332
Q ss_pred -------------------CceEEEEEeccChhHHHHHHHhccCC---eeeccCCC-----ccccccceEEEEeccCCCC
Q psy8497 192 -------------------MKQMLVVSATYSHDNLATLQKYMVDP---LLIRPEDA-----TRPLLGVKQLVALIPECKN 244 (2355)
Q Consensus 192 -------------------nrQILLLSATLS~EILElLkKfLrdP---vIIrVese-----e~~~seVrQvVvqVpe~kn 244 (2355)
-.|+|++|+...++...++...+.+. +.+..... ......+.|+...++...-
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 24999999999988888887754331 22222211 2344567777776653321
Q ss_pred Cc---chhhhHHHHHHHHHh-cCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEE
Q psy8497 245 PS---LRYVDEEKKLVQLLS-QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320 (2355)
Q Consensus 245 ~s---Lt~lsKkeaLLqLLe-rl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLV 320 (2355)
.. ..+.--...++-.+. .....++|||+++--.--.|..+|.+.++.++.++--.+..+-.++-..|..|+..|||
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 11 111112243444444 55557999999999999999999999999999999999999999999999999999999
Q ss_pred Eeccc--ccccCCCCccEEEEecCCCCHhHHHHHhhccCCCC------CccEEEEEEcccCHHHHHHHH
Q psy8497 321 TTDLA--ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG------TRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 321 STSAL--GEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG------QkGkVIVLVSsdDVEeIEsLr 381 (2355)
.|.=. =.=..|..+..||+|.+|..|+-|...+.-..... ....|.++++.-+...++.+.
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 99532 24445777999999999999998888886555432 257888898888777777663
|
; GO: 0005634 nucleus |
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.6e-09 Score=132.59 Aligned_cols=293 Identities=15% Similarity=0.183 Sum_probs=176.8
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
.+|-+|||+|||.+.+ -.+.... ..+..++|+|.-.++|+.++...++...-. ++ +.|............++-
T Consensus 52 ~vVRSpMGTGKTtaLi-~wLk~~l--~~~~~~VLvVShRrSL~~sL~~rf~~~~l~--gF--v~Y~d~~~~~i~~~~~~r 124 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALI-RWLKDAL--KNPDKSVLVVSHRRSLTKSLAERFKKAGLS--GF--VNYLDSDDYIIDGRPYDR 124 (824)
T ss_pred EEEECCCCCCcHHHHH-HHHHHhc--cCCCCeEEEEEhHHHHHHHHHHHHhhcCCC--cc--eeeeccccccccccccCe
Confidence 6889999999995433 3333321 145788999999999999999988865321 22 222222222122234677
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh-------HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF-------VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF-------~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
+++..+.|..+. .-.+.++++|||||+-.++..-| ...+..+...+.....+|++-|++.....+++..+
T Consensus 125 LivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~ 201 (824)
T PF02399_consen 125 LIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASC 201 (824)
T ss_pred EEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHh
Confidence 888878775443 12355689999999998765422 12222233445567789999999999999998886
Q ss_pred ccCCeeeccCCC-ccccccceEEEEe-----------cc-C--CC-------------CCc---chhhhHHHHHHHHHhc
Q psy8497 214 MVDPLLIRPEDA-TRPLLGVKQLVAL-----------IP-E--CK-------------NPS---LRYVDEEKKLVQLLSQ 262 (2355)
Q Consensus 214 LrdPvIIrVese-e~~~seVrQvVvq-----------Vp-e--~k-------------n~s---Lt~lsKkeaLLqLLer 262 (2355)
.....+..+... .......+..+.. +. . .. ... .....-...|..-|..
T Consensus 202 Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~ 281 (824)
T PF02399_consen 202 RPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNA 281 (824)
T ss_pred CCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhC
Confidence 433221111111 0000000000000 00 0 00 000 0001122333333333
Q ss_pred CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc--cEEEEe
Q psy8497 263 TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV--DLVINL 340 (2355)
Q Consensus 263 l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV--DTVIIy 340 (2355)
+.+|-||+.+...++.++++......++..+.+.-+..+. +. =++++|||-|.++..||++-.. +-|..|
T Consensus 282 --gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~y 353 (824)
T PF02399_consen 282 --GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAY 353 (824)
T ss_pred --CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEEEEE
Confidence 3578899999999999999999988899999886655422 11 3578999999999999998654 334444
Q ss_pred cCC--C--CHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 341 EIP--H--DAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 341 DSP--~--SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
=-| . +..+..|++||+-.. ....++++++..
T Consensus 354 vk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 354 VKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred ecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 223 2 455689999999775 445667776543
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=124.84 Aligned_cols=301 Identities=15% Similarity=0.183 Sum_probs=163.4
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCC--
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-- 136 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqir-- 136 (2355)
+..+|.--+|||||++.+..+- .|.+. ...+.|||||-.+.|-.|+.+.+..+........ -..........+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~~l~~~ 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKELLEDG 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHHHHhcC
Confidence 4599999999999987664443 34433 6678899999999999999999999865441111 0111111111111
Q ss_pred CCcEEEECHHHHHHHHHhh--cccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHH-----
Q psy8497 137 PVQIVVGSPGRIKQMIKLK--YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT----- 209 (2355)
Q Consensus 137 q~DILVTTPErLLDLLdrr--~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILEl----- 209 (2355)
.-.|||||-+.|....... ......--+||+|||||-- ++..-..+...++ ....+++|+||.......
T Consensus 350 ~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt~~~ 425 (962)
T COG0610 350 KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTPIFKEDKDTTKDV 425 (962)
T ss_pred CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCccccccccchhhh
Confidence 2479999999987777553 1112333479999999843 2233333344443 478899999987443222
Q ss_pred HHHhccCCeeeccCCCccccccceEEEE-eccCCCC--C-cchh------------------------------hhHH--
Q psy8497 210 LQKYMVDPLLIRPEDATRPLLGVKQLVA-LIPECKN--P-SLRY------------------------------VDEE-- 253 (2355)
Q Consensus 210 LkKfLrdPvIIrVesee~~~seVrQvVv-qVpe~kn--~-sLt~------------------------------lsKk-- 253 (2355)
...++ ..+.+...........+..... .+..... . .... ....
T Consensus 426 fg~yl-h~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~ 504 (962)
T COG0610 426 FGDYL-HTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRA 504 (962)
T ss_pred hccee-EEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHH
Confidence 11211 1111211111111111110000 0000000 0 0000 0000
Q ss_pred -HHHHHHHh--cCCCCeEEEEEcccccHHHHHHHHHhcC-------------------Cc----cEEeeCCCCHHHHHHH
Q psy8497 254 -KKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLANAN-------------------FG----AEYLSGAQDQKARLAS 307 (2355)
Q Consensus 254 -eaLLqLLe--rl~kgRVLVFSQTRKmAEiLADyLrErG-------------------IK----VarLHGgMSqEERqeI 307 (2355)
..+...+. .....++++.+.+++.+..+.+.+.... +. ....|.. ....+...
T Consensus 505 a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 583 (962)
T COG0610 505 AKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKDL 583 (962)
T ss_pred HHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhhh
Confidence 11111111 1223477777777774444443332210 00 0000111 12233344
Q ss_pred HHHH--hCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC--C--CccEEEEEEc
Q psy8497 308 LDSF--KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY--G--TRGLVITIVS 370 (2355)
Q Consensus 308 LErF--RSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi--G--QkGkVIVLVS 370 (2355)
..+| ....+++||.++++-.|+|.|.+.++. +|-|.-.+.++|++.|+.|. + ..|.++-|+.
T Consensus 584 ~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 584 IKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 4553 356789999999999999999998765 78888999999999999995 3 2355555554
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=106.36 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=77.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+.-.+|...+|+|||.-.+..++.... ..+.++|||.||+.++..+.+.++.. ++++.. ..-.......
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i---~~~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t---~~~~~~~~g~ 72 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAI---KRRLRVLVLAPTRVVAEEMYEALKGL-----PVRFHT---NARMRTHFGS 72 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHH---HTT--EEEEESSHHHHHHHHHHTTTS-----SEEEES---TTSS----SS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHH---HccCeEEEecccHHHHHHHHHHHhcC-----CcccCc---eeeeccccCC
Confidence 344688999999999766655554333 25789999999999977777766543 222221 1110111223
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC--hHHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG--FVEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G--F~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
.-|-|+|+..+...+.. ......|++||+||+|..-... +...+... ... ....+|+|||||+-.
T Consensus 73 ~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGS 139 (148)
T ss_dssp SSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT-
T ss_pred CcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCC
Confidence 45889999998777655 5567899999999999743222 11222222 222 246799999999854
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=110.80 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHH----HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC--CCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPY----VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV--QQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 43 eLRPYQeEALn~----LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~--qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.++|.|.+.+.. +..+.++||.+|||+|||++++++++.++..... ...+++|+++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 569999995544 4567889999999999999999999887764222 2348999999999988887777665
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=110.80 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHH----HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC--CCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPY----VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV--QQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 43 eLRPYQeEALn~----LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~--qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.++|.|.+.+.. +..+.++||.+|||+|||++++++++.++..... ...+++|+++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 569999995544 4567889999999999999999999887764222 2348999999999988887777665
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-06 Score=111.27 Aligned_cols=139 Identities=16% Similarity=0.228 Sum_probs=84.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH-----HHhc-ccC--CcEEEEEECCcc-
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR-----SVGA-HVK--NLHVDYFIGGTQ- 130 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR-----EFgk-~AP--gLrVVvytGGkq- 130 (2355)
++.+.++||+|||.+|+-.|+..... ....++|||||+.++.+.+.+.+. ..+. ... .+.+-++.+...
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~--~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK--YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 68999999999999999888766553 345789999999999877665554 1111 111 244445554320
Q ss_pred --------cc---------CCCCCCcEEEECHHHHHHHHH--hh--cc----cCcCc-------eEEEecccchhcccCh
Q psy8497 131 --------VE---------RPKRPVQIVVGSPGRIKQMIK--LK--YL----NMDSV-------RLFIMDEADKLINTGF 178 (2355)
Q Consensus 131 --------~r---------kqirq~DILVTTPErLLDLLd--rr--~L----dLSkI-------dLLIVDEAHRLkN~GF 178 (2355)
.. .......|+|+|.++|..-.. .. .+ .-..| -+||+||.|++....
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~- 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN- 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch-
Confidence 00 011137899999998754211 00 00 00111 279999999985432
Q ss_pred HHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 179 VEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 179 ~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
..+..| ..+.+.+ +|.+|||...
T Consensus 218 -k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 218 -KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred -HHHHHH-HhcCccc-EEEEeeecCC
Confidence 233333 5555444 5679999875
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-07 Score=114.47 Aligned_cols=322 Identities=16% Similarity=0.190 Sum_probs=188.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.++.+|.-+.-. -....|.-+-||-|||+++++|+.-... .+..+.||...--|+.--.+|+..+..++ ++.|
T Consensus 80 ~~~dVQliG~i~--lh~g~iaEM~TGEGKTL~atlp~ylnaL----~gkgVhvVTvNdYLA~RDae~m~~l~~~L-Glsv 152 (822)
T COG0653 80 RHFDVQLLGGIV--LHLGDIAEMRTGEGKTLVATLPAYLNAL----AGKGVHVVTVNDYLARRDAEWMGPLYEFL-GLSV 152 (822)
T ss_pred ChhhHHHhhhhh--hcCCceeeeecCCchHHHHHHHHHHHhc----CCCCcEEeeehHHhhhhCHHHHHHHHHHc-CCce
Confidence 445555554443 3445699999999999999988754332 36678999999999999999999999998 9999
Q ss_pred EEEECCccccC--CCCCCcEEEECHHHHH-HHHHh------hcccCcCceEEEecccchhc-c---------c------C
Q psy8497 123 DYFIGGTQVER--PKRPVQIVVGSPGRIK-QMIKL------KYLNMDSVRLFIMDEADKLI-N---------T------G 177 (2355)
Q Consensus 123 VvytGGkq~rk--qirq~DILVTTPErLL-DLLdr------r~LdLSkIdLLIVDEAHRLk-N---------~------G 177 (2355)
.+...+..... ..-.++|..+|-..|- +.+.. .........+.||||++-++ + . .
T Consensus 153 G~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~ 232 (822)
T COG0653 153 GVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSE 232 (822)
T ss_pred eeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCch
Confidence 88877764332 2233899999976431 22211 11224567788999998653 1 1 1
Q ss_pred hHHHHHHHHHhCCCC--------ceEEEEEec--------------cChh-------HHHHHH---HhccC-CeeeccCC
Q psy8497 178 FVEDITWIYSQLPPM--------KQMLVVSAT--------------YSHD-------NLATLQ---KYMVD-PLLIRPED 224 (2355)
Q Consensus 178 F~SrLeeILs~Lppn--------rQILLLSAT--------------LS~E-------ILElLk---KfLrd-PvIIrVes 224 (2355)
.+..+..++..+... .+.|.+|-. ...+ +.+.+. .+..+ .++++...
T Consensus 233 ~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~e 312 (822)
T COG0653 233 LYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGE 312 (822)
T ss_pred HHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCe
Confidence 244455555444322 122222220 0000 000110 00011 01100000
Q ss_pred -------Cc------------------------------------------------------cccccceEE----EEec
Q psy8497 225 -------AT------------------------------------------------------RPLLGVKQL----VALI 239 (2355)
Q Consensus 225 -------ee------------------------------------------------------~~~seVrQv----VvqV 239 (2355)
.. ........+ +..+
T Consensus 313 v~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~i 392 (822)
T COG0653 313 VVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVI 392 (822)
T ss_pred EEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeec
Confidence 00 000011111 1111
Q ss_pred c---------CCCCCcchhhhHHHHHHHHHh--cCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHH
Q psy8497 240 P---------ECKNPSLRYVDEEKKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASL 308 (2355)
Q Consensus 240 p---------e~kn~sLt~lsKkeaLLqLLe--rl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeIL 308 (2355)
| .....+.....+..+++..+. ...+.+|||-+.+++..+.+...|.+.|+...+|...-...|-..+.
T Consensus 393 PTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia 472 (822)
T COG0653 393 PTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIA 472 (822)
T ss_pred cCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHh
Confidence 1 111111222233333333322 23456999999999999999999999999998888876644444433
Q ss_pred HHHhCCCc-cEEEEecccccccCCCCcc-----------EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 309 DSFKRGKV-RILVTTDLAARGIDAANVD-----------LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 309 ErFRSGEI-dVLVSTSALGEGLDLPaVD-----------TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
. .|.. .|-|||+++++|-||.--. .||-..-.-|..-+-|..||+||.|.+|....|++-.+.
T Consensus 473 ~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~ 547 (822)
T COG0653 473 Q---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDD 547 (822)
T ss_pred h---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHH
Confidence 3 3433 5889999999999974322 355455555777788999999999999988887765443
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=117.99 Aligned_cols=322 Identities=16% Similarity=0.194 Sum_probs=179.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCe-EEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEE
Q psy8497 48 QMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQ-TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFI 126 (2355)
Q Consensus 48 QeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggR-VLILVPTRALAqQ~anwLREFgk~APgLrVVvyt 126 (2355)
-.+.++.+....-+||-++||+|||..+..-||+.+.+.....-. +.+.-|++..+.-+.+.+..--....+-.|+.-.
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~v 462 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNV 462 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccc
Confidence 334445555556689999999999999888889888765443333 3444477665555555444321111011111110
Q ss_pred CCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc-ccChHHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 127 GGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI-NTGFVEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 127 GGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk-N~GF~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
--... .....--|+.+|-+-++.++... +..+.++|+||+|..- +..|...+..-+........++++|||+..+
T Consensus 463 Rf~Sa-~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd 538 (1282)
T KOG0921|consen 463 RFDSA-TPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTD 538 (1282)
T ss_pred ccccc-ccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchh
Confidence 00000 00111348889999888777654 3456699999999643 2223332222222223344556666655432
Q ss_pred HH--------------------HHHHHhccCCeeeccCCCc-----------ccccc-c-eEEEEeccCCCCCc------
Q psy8497 206 NL--------------------ATLQKYMVDPLLIRPEDAT-----------RPLLG-V-KQLVALIPECKNPS------ 246 (2355)
Q Consensus 206 IL--------------------ElLkKfLrdPvIIrVesee-----------~~~se-V-rQvVvqVpe~kn~s------ 246 (2355)
.+ .+....+..+...-+.... ..... . +..-..+.......
T Consensus 539 ~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~ 618 (1282)
T KOG0921|consen 539 LFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMS 618 (1282)
T ss_pred hhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhh
Confidence 21 1111111111111110000 00000 0 00000000000000
Q ss_pred -----chhhhHHHHHHHHHh-cCCCCeEEEEEcccccHHHHHHHHHhc-------CCccEEeeCCCCHHHHHHHHHHHhC
Q psy8497 247 -----LRYVDEEKKLVQLLS-QTPFNQCVIFSNYQLRPEVICENLANA-------NFGAEYLSGAQDQKARLASLDSFKR 313 (2355)
Q Consensus 247 -----Lt~lsKkeaLLqLLe-rl~kgRVLVFSQTRKmAEiLADyLrEr-------GIKVarLHGgMSqEERqeILErFRS 313 (2355)
.......++|+..+. ..-.+-||||.+-...+..|..+|... .+.+..+|+.+...+..++.+....
T Consensus 619 ~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~ 698 (1282)
T KOG0921|consen 619 RLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE 698 (1282)
T ss_pred cchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc
Confidence 011122233333222 222357999999999999998888763 3677889999888888888888888
Q ss_pred CCccEEEEecccccccCCCCccEEEEecCC-----------------C-CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 314 GKVRILVTTDLAARGIDAANVDLVINLEIP-----------------H-DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 314 GEIdVLVSTSALGEGLDLPaVDTVIIyDSP-----------------~-SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|.+++|++|.+....|-+-++..||..+.- | +..+.+|+-||++|. ++|.+..++...-.
T Consensus 699 gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF 776 (1282)
T KOG0921|consen 699 GVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARF 776 (1282)
T ss_pred cccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHHH
Confidence 999999999999999988877777643322 1 677889999999994 77888877765433
|
|
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-06 Score=105.14 Aligned_cols=337 Identities=17% Similarity=0.213 Sum_probs=202.4
Q ss_pred CCCcHHHHHHHHHHHcCCcEEE-EccCCchH--HHHHHHHHHHHHHhc---------------------------CCCCC
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIV-QSKSGTGK--SIVFVVAALNKLIKL---------------------------PVQQP 91 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVIL-AAPTGSGK--TLVALIAILerL~ek---------------------------r~qgg 91 (2355)
..|++.|.+.+..+.+-++++. ..-++.|+ +-+|++-++.++.+. --..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 4899999999999998888654 34445566 346666666665531 01246
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEE---------EEEEC---------------------CccccCC-------
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHV---------DYFIG---------------------GTQVERP------- 134 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrV---------VvytG---------------------Gkq~rkq------- 134 (2355)
+||||||+++.|..+.+.+..++.....-.. .-|.| .....-.
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999998887332211010 11111 1111000
Q ss_pred --------CCCCcEEEECHHHHHHHHH------hhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCC--------
Q psy8497 135 --------KRPVQIVVGSPGRIKQMIK------LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM-------- 192 (2355)
Q Consensus 135 --------irq~DILVTTPErLLDLLd------rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn-------- 192 (2355)
....+||||+|=-|.-++. +.+-.++.|.++|||-+|.++...| ..+..++.+|...
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 0116899999987655554 1333478899999999998875543 4455555554321
Q ss_pred ----------------ceEEEEEeccChhHHHHHHHhccCC---eeeccCC----CccccccceEEEEeccCCC---CCc
Q psy8497 193 ----------------KQMLVVSATYSHDNLATLQKYMVDP---LLIRPED----ATRPLLGVKQLVALIPECK---NPS 246 (2355)
Q Consensus 193 ----------------rQILLLSATLS~EILElLkKfLrdP---vIIrVes----ee~~~seVrQvVvqVpe~k---n~s 246 (2355)
.|+|++|+--.+....++..++.+. +..+.-. .......+.|+...+.... ...
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 2556666654444444444443221 1111111 1111112222221111100 000
Q ss_pred chhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-
Q psy8497 247 LRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA- 325 (2355)
Q Consensus 247 Lt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL- 325 (2355)
..+.--...++--+.......+|||.++--..-.+..+|++..+.+..|+.-.+...-.++-..|-.|...|||-|.-+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 1111111222222222234578999999999999999999999988888877777776777788999999999999543
Q ss_pred -ccccCCCCccEEEEecCCCCHhHH---HHHhhccCCCC----CccEEEEEEcccCHHHHHH
Q psy8497 326 -ARGIDAANVDLVINLEIPHDAATY---LHRMGRAGRYG----TRGLVITIVSAESLVKFHS 379 (2355)
Q Consensus 326 -GEGLDLPaVDTVIIyDSP~SPqSY---IQRIGRAGRiG----QkGkVIVLVSsdDVEeIEs 379 (2355)
-+-.+|..|.-||+|.+|.+|+-| +.+++|+.-.| ....|.++++.-+.-.++.
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ 675 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLEN 675 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHH
Confidence 356678889999999999999765 56666665433 2345666666655444443
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=4e-08 Score=126.50 Aligned_cols=265 Identities=14% Similarity=0.185 Sum_probs=157.7
Q ss_pred CCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 43 KESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
...|.|.+.+--++. ..++++.+|||+|||+++.++++..+.. .+..+++||+|..+|+..-.+...+.. ..++++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~--~p~~kvvyIap~kalvker~~Dw~~r~-~~~g~k 1003 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY--YPGSKVVYIAPDKALVKERSDDWSKRD-ELPGIK 1003 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc--CCCccEEEEcCCchhhcccccchhhhc-ccCCce
Confidence 444555555544443 3468999999999999999999988775 445889999999999876555444432 234899
Q ss_pred EEEEECCcccc-CCCCCCcEEEECHHHHHHHHH--hhcccCcCceEEEecccchhcccChHHHHHH-------HHHhCCC
Q psy8497 122 VDYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIK--LKYLNMDSVRLFIMDEADKLINTGFVEDITW-------IYSQLPP 191 (2355)
Q Consensus 122 VVvytGGkq~r-kqirq~DILVTTPErLLDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF~SrLee-------ILs~Lpp 191 (2355)
++-.+|+.... ......+|+|+||+++..... .....+.++.+||+||.|.+... +...++. +-...+.
T Consensus 1004 ~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~t~~ 1082 (1230)
T KOG0952|consen 1004 VIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQTEE 1082 (1230)
T ss_pred eEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccccCc
Confidence 99999987665 445568999999999877665 34456788999999999987754 2222222 2223344
Q ss_pred CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEE
Q psy8497 192 MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIF 271 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVF 271 (2355)
..+++++|.-+.. ...+..++.....+..... ....+++..+.-++...............+..+....+...+|||
T Consensus 1083 ~vr~~glsta~~n--a~dla~wl~~~~~~nf~~s-vrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lif 1159 (1230)
T KOG0952|consen 1083 PVRYLGLSTALAN--ANDLADWLNIKDMYNFRPS-VRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIF 1159 (1230)
T ss_pred chhhhhHhhhhhc--cHHHHHHhCCCCcCCCCcc-cccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEE
Confidence 5677777655442 2334444443222111111 111122222222333111111122233555556666677799999
Q ss_pred EcccccH----HHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCc
Q psy8497 272 SNYQLRP----EVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316 (2355)
Q Consensus 272 SQTRKmA----EiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEI 316 (2355)
+.++++. ..|...+....-...+++ |+..+-+.++..-++...
T Consensus 1160 v~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1160 VSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTNL 1206 (1230)
T ss_pred eecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccch
Confidence 9877654 334444433333344444 335566666666555443
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-05 Score=102.75 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=59.3
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
..|++.||..|..-+....+.+..+..|||||||++....-+..+..++....+..-|.+|||.|..
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 4699999999988777888999999999999999999888788888888888888889999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-05 Score=83.99 Aligned_cols=69 Identities=17% Similarity=0.339 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHH-----hcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLI-----KLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~-----ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
+|.+.|.+|+..++.... ++|.+|.|+|||.+.. .++..+. .....+.++||++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478999999999999988 9999999999995444 4444441 1135678899999999999988888887
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-05 Score=91.89 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=105.9
Q ss_pred CCCcHHHHHHHHHHHc----------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 42 VKESPIQMAAFPYVLN----------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
..|...|.+++-.+.+ +...+|.+.||.||--+....|+..+.+ ...+.|+|..+..|.....+.++
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---Gr~r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR---GRKRAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---CCCceEEEECChhhhhHHHHHHH
Confidence 3689999999977653 2358999999999987766666666553 34569999999999999999999
Q ss_pred HHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh-----hc----ccC---cCceEEEecccchhcccCh-
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL-----KY----LNM---DSVRLFIMDEADKLINTGF- 178 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr-----r~----LdL---SkIdLLIVDEAHRLkN~GF- 178 (2355)
.++.. .+.+..+..-...........||++||..|...... .. +.| ..-.+||+||||.+++..-
T Consensus 113 DIG~~--~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~ 190 (303)
T PF13872_consen 113 DIGAD--NIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSG 190 (303)
T ss_pred HhCCC--cccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCcc
Confidence 88654 233333332211111122367999999998766421 01 011 1224899999999887532
Q ss_pred -------HHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 179 -------VEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 179 -------~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
...+..+-..+| ..+++++|||...+
T Consensus 191 ~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 191 SKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred CccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 234444555564 66799999997643
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=92.44 Aligned_cols=128 Identities=16% Similarity=0.249 Sum_probs=93.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|++.|.-++=.|..|+ |+...||-|||+++.++++.... .+..|-||+.+..|+..=.+|+..++..+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL----~G~~V~vvT~NdyLA~RD~~~~~~~y~~L- 145 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL----QGKGVHVVTSNDYLAKRDAEEMRPFYEFL- 145 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT----TSS-EEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH----hcCCcEEEeccHHHhhccHHHHHHHHHHh-
Confidence 565 89999999998776665 99999999999987766654433 37789999999999999999999999888
Q ss_pred CcEEEEEECCccccC--CCCCCcEEEECHHHHH-HHHHhh------cccCcCceEEEecccchhc
Q psy8497 119 NLHVDYFIGGTQVER--PKRPVQIVVGSPGRIK-QMIKLK------YLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--qirq~DILVTTPErLL-DLLdrr------~LdLSkIdLLIVDEAHRLk 174 (2355)
++.+..+..+..... ..-.++|+++|...|. +++... ....+.+.++||||++.++
T Consensus 146 Glsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999998765321 1223789999998764 444431 1124678899999999754
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG1133|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0063 Score=78.15 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=75.8
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC-------ccEEeeCCCCHHHHHHHHHHHhC----CCccEEEEe--cc
Q psy8497 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANF-------GAEYLSGAQDQKARLASLDSFKR----GKVRILVTT--DL 324 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTRKmAEiLADyLrErGI-------KVarLHGgMSqEERqeILErFRS----GEIdVLVST--SA 324 (2355)
.+....+ +-|++|+++-+-+..+.+.+...|+ +.+++-.... -..+++.|.. |.-.+|+|. --
T Consensus 623 nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGK 698 (821)
T KOG1133|consen 623 NLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGK 698 (821)
T ss_pred HHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 3333444 6899999999999999999887653 2233333222 3456666653 454677776 45
Q ss_pred cccccCCCC--ccEEEEecCCCC--------------------------------HhHHHHHhhccCCCCCccEEEEEEc
Q psy8497 325 AARGIDAAN--VDLVINLEIPHD--------------------------------AATYLHRMGRAGRYGTRGLVITIVS 370 (2355)
Q Consensus 325 LGEGLDLPa--VDTVIIyDSP~S--------------------------------PqSYIQRIGRAGRiGQkGkVIVLVS 370 (2355)
+.+|||+.+ ++.||.+.+|+. ....-|.||||-|--++.-+|++++
T Consensus 699 lSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 699 LSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred cccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 689999987 688998998873 1234599999999777777777775
Q ss_pred c
Q psy8497 371 A 371 (2355)
Q Consensus 371 s 371 (2355)
.
T Consensus 779 ~ 779 (821)
T KOG1133|consen 779 K 779 (821)
T ss_pred h
Confidence 4
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.6e-05 Score=83.24 Aligned_cols=112 Identities=26% Similarity=0.334 Sum_probs=78.5
Q ss_pred HHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC--ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec--ccccccCCC
Q psy8497 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANF--GAEYLSGAQDQKARLASLDSFKRGKVRILVTTD--LAARGIDAA 332 (2355)
Q Consensus 257 LqLLerl~kgRVLVFSQTRKmAEiLADyLrErGI--KVarLHGgMSqEERqeILErFRSGEIdVLVSTS--ALGEGLDLP 332 (2355)
.+++...+ +.+|||+++.+.++.+.+.|..... .+..+.- ...++..+++.|+.+.-.||+++. .+.+|||+|
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 44555554 7999999999999999999987542 2222332 356788999999999999999998 999999999
Q ss_pred C--ccEEEEecCCCC----H--------------------------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 333 N--VDLVINLEIPHD----A--------------------------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 333 a--VDTVIIyDSP~S----P--------------------------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
. +.+||+...|+. + ....|++||+-|...+--++++++.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 7 778999999962 1 2346999999997777777777655
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.2e-05 Score=82.92 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=72.1
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
+|++-|.+++..++... -++|.++.|+|||.+ +..+...+.. .+.++++++||...+..+.+... +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~---~g~~v~~~apT~~Aa~~L~~~~~--------~ 68 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA---AGKRVIGLAPTNKAAKELREKTG--------I 68 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH---TT--EEEEESSHHHHHHHHHHHT--------S
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh---CCCeEEEECCcHHHHHHHHHhhC--------c
Confidence 47899999999997654 378889999999964 4445555553 35889999999988665444421 1
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcc----cCcCceEEEecccchhcccChHHHHHHHHHhCCC-CceE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYL----NMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP-MKQM 195 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~L----dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp-nrQI 195 (2355)
. ..|...++........ .+...++|||||+-++.. ..+..++...+. ..++
T Consensus 69 ~--------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ll~~~~~~~~kl 124 (196)
T PF13604_consen 69 E--------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLARLLRLAKKSGAKL 124 (196)
T ss_dssp ---------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHHHHHHS-T-T-EE
T ss_pred c--------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHHHHHHHHhcCCEE
Confidence 1 2222222111111000 145567999999997653 445666666655 5677
Q ss_pred EEEEec
Q psy8497 196 LVVSAT 201 (2355)
Q Consensus 196 LLLSAT 201 (2355)
|++.-+
T Consensus 125 ilvGD~ 130 (196)
T PF13604_consen 125 ILVGDP 130 (196)
T ss_dssp EEEE-T
T ss_pred EEECCc
Confidence 776654
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00066 Score=88.05 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=43.3
Q ss_pred CCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC
Q psy8497 314 GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY 359 (2355)
Q Consensus 314 GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi 359 (2355)
...++|++--+|.+|.|=|+|=+++-+....|..+=+|-+||..|.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 4578999999999999999999999999999999999999999995
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00026 Score=89.50 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=69.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 33 RQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 33 LK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
=+.+...++++|..-|..|+..+++..=.||++|.|+|||++.. .|+..|.+ ...++|||++|+-..+.|+.+.+.+
T Consensus 400 P~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~--~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 400 PRRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR--QHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred chhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHH--hcCCceEEEcccchhHHHHHHHHHh
Confidence 34566688999999999999999999889999999999997655 44445553 3578899999999999999999988
Q ss_pred HhcccCCcEEEEEE
Q psy8497 113 VGAHVKNLHVDYFI 126 (2355)
Q Consensus 113 Fgk~APgLrVVvyt 126 (2355)
. +++|+-+.
T Consensus 477 t-----gLKVvRl~ 485 (935)
T KOG1802|consen 477 T-----GLKVVRLC 485 (935)
T ss_pred c-----CceEeeee
Confidence 7 35555444
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=8.5e-05 Score=84.12 Aligned_cols=140 Identities=20% Similarity=0.249 Sum_probs=71.8
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
+...+..|..++..|+...-+++.+|.|+|||++++.+++..+.. ..-.+++|+-|.... -+++ .++|+-
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~--g~~~kiii~Rp~v~~----~~~l----GflpG~ 71 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE--GEYDKIIITRPPVEA----GEDL----GFLPGD 71 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT--TS-SEEEEEE-S--T----T--------SS---
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh--CCCcEEEEEecCCCC----cccc----ccCCCC
Confidence 456789999999999977779999999999999999999988875 455678888887654 1111 111110
Q ss_pred EEEE--------------EECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHH
Q psy8497 121 HVDY--------------FIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIY 186 (2355)
Q Consensus 121 rVVv--------------ytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeIL 186 (2355)
---- +.+............|-+.+...+. ...+ ...+||||||+.+. ...+..++
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iR------Grt~-~~~~iIvDEaQN~t----~~~~k~il 140 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIR------GRTF-DNAFIIVDEAQNLT----PEELKMIL 140 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT------T--B--SEEEEE-SGGG------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhc------Cccc-cceEEEEecccCCC----HHHHHHHH
Confidence 0000 0000000000111223333332220 1111 13689999999764 36778888
Q ss_pred HhCCCCceEEEEEec
Q psy8497 187 SQLPPMKQMLVVSAT 201 (2355)
Q Consensus 187 s~LppnrQILLLSAT 201 (2355)
..+....++|++.-.
T Consensus 141 TR~g~~skii~~GD~ 155 (205)
T PF02562_consen 141 TRIGEGSKIIITGDP 155 (205)
T ss_dssp TTB-TT-EEEEEE--
T ss_pred cccCCCcEEEEecCc
Confidence 888888888876654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00041 Score=82.87 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=60.9
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
+||.+..|+|||++++-. +..+. ....+..+++|++...|...+...+.... .......
T Consensus 4 ~~I~G~aGTGKTvla~~l-~~~l~-~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------------------~~~~~~~ 62 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNL-AKELQ-NSEEGKKVLYLCGNHPLRNKLREQLAKKY-------------------NPKLKKS 62 (352)
T ss_pred EEEEecCCcCHHHHHHHH-HHHhh-ccccCCceEEEEecchHHHHHHHHHhhhc-------------------ccchhhh
Confidence 788999999999877644 44441 12457789999999999766666665432 0001223
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
.+..+..+...+.........+++|||||||+|..
T Consensus 63 ~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 63 DFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 34455445433322223467889999999999987
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >KOG0298|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00028 Score=93.93 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=92.7
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHh--------------cCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC-cEE
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIK--------------LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN-LHV 122 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~e--------------kr~qggRVLILVPTRALAqQ~anwLREFgk~APg-LrV 122 (2355)
++.++++.+||.|||..-+...+..+.+ ....-+.+|||||..-| .+|+.++...++. +.|
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl----~QW~~EI~kH~~~~lKv 449 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAIL----MQWFEEIHKHISSLLKV 449 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHH----HHHHHHHHHhccccceE
Confidence 4568999999999998766555433221 12234679999999666 4455555555544 477
Q ss_pred EEEECCccccC----CCCCCcEEEECHHHHHHHHHhhc--------------cc----C--cCceEEEecccchhcccCh
Q psy8497 123 DYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKY--------------LN----M--DSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 123 VvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~--------------Ld----L--SkIdLLIVDEAHRLkN~GF 178 (2355)
..|.|-...-. ....+|||||||+.|..-+.... +. + -.|=-||||||+++-..
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess-- 527 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS-- 527 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--
Confidence 77877654332 23449999999999876554310 00 0 01113899999987653
Q ss_pred HHHHHHHHHhCCCCceEEEEEeccChhHH
Q psy8497 179 VEDITWIYSQLPPMKQMLVVSATYSHDNL 207 (2355)
Q Consensus 179 ~SrLeeILs~LppnrQILLLSATLS~EIL 207 (2355)
.+...+++..++ ....-++|+||...+.
T Consensus 528 sS~~a~M~~rL~-~in~W~VTGTPiq~Id 555 (1394)
T KOG0298|consen 528 SSAAAEMVRRLH-AINRWCVTGTPIQKID 555 (1394)
T ss_pred HHHHHHHHHHhh-hhceeeecCCchhhhh
Confidence 366777777775 3445789999887743
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=85.11 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=89.7
Q ss_pred CcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc-CCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 44 ESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL-PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 44 LRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek-r~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
..++|+.|+...+..+-+||.++.|+|||.+. ..++..+.+. .....++++++||--.+..+.+.+.......+ +
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~-~-- 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLP-L-- 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccc-c--
Confidence 45899999999999888999999999999553 3444444431 12345788999999998877776654332220 0
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHH------hhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEE
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIK------LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQML 196 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLd------rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQIL 196 (2355)
.. ........-..|-.+|+.... ........+++|||||+-++- ...+..++..+++..++|
T Consensus 229 ---~~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~rlI 296 (615)
T PRK10875 229 ---TD-----EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHARVI 296 (615)
T ss_pred ---ch-----hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCEEE
Confidence 00 000011122345444432211 111123456899999999753 256677888899999999
Q ss_pred EEEec
Q psy8497 197 VVSAT 201 (2355)
Q Consensus 197 LLSAT 201 (2355)
++.-.
T Consensus 297 lvGD~ 301 (615)
T PRK10875 297 FLGDR 301 (615)
T ss_pred Eecch
Confidence 87753
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0024 Score=83.49 Aligned_cols=128 Identities=20% Similarity=0.113 Sum_probs=81.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
.++ .|.+-|.+|+..+...+-+||.++.|+|||.+. -.++..+.. ......+++++||-..+..+. +..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~----e~~---- 388 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEE-LGGLLPVGLAAPTGRAAKRLG----EVT---- 388 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHH-cCCCceEEEEeCchHHHHHHH----Hhc----
Confidence 444 899999999999988888999999999999553 355555542 111257888999988865433 221
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh-----hcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCc
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL-----KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr-----r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppnr 193 (2355)
+.. ..|..+|+..... ..-.....++|||||++++.. ..+..++..++...
T Consensus 389 g~~--------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~ 444 (720)
T TIGR01448 389 GLT--------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDHA 444 (720)
T ss_pred CCc--------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCCCC
Confidence 100 1222222211000 001124567999999998753 34566677788888
Q ss_pred eEEEEEec
Q psy8497 194 QMLVVSAT 201 (2355)
Q Consensus 194 QILLLSAT 201 (2355)
++|++.-+
T Consensus 445 rlilvGD~ 452 (720)
T TIGR01448 445 RLLLVGDT 452 (720)
T ss_pred EEEEECcc
Confidence 98887653
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0012 Score=77.60 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=88.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH----------
Q psy8497 33 RQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI---------- 102 (2355)
Q Consensus 33 LK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL---------- 102 (2355)
+....-+++...+..|...+.++.....+++.+|+|+|||+.++..++..+.. ..-.+++|+=|....
T Consensus 49 ~~~~~~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~--~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 49 RDSRDTSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH--KDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred hhhcCCccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCeeEEEEeCCCCCchhhhCcCCCC
Confidence 34444467778899999999999888889999999999999988777766643 223445555565432
Q ss_pred -HHHHHHHHHHHhcccCCcEEEEEECCccccCCC--CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChH
Q psy8497 103 -AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK--RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFV 179 (2355)
Q Consensus 103 -AqQ~anwLREFgk~APgLrVVvytGGkq~rkqi--rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~ 179 (2355)
.+-+.-|+.-+...+. .+.+........ ..-.|-|.....+ +-..+ .-++||||||+.+.-
T Consensus 127 ~~eK~~p~~~pi~D~L~-----~~~~~~~~~~~~~~~~~~Iei~~l~ym----RGrtl---~~~~vIvDEaqn~~~---- 190 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLV-----RRLGASFMQYCLRPEIGKVEIAPFAYM----RGRTF---ENAVVILDEAQNVTA---- 190 (262)
T ss_pred HHHHHHHHHHHHHHHHH-----HHhChHHHHHHHHhccCcEEEecHHHh----cCCcc---cCCEEEEechhcCCH----
Confidence 1222222222211110 001111111110 1123555554333 21221 236999999997652
Q ss_pred HHHHHHHHhCCCCceEEEEEe
Q psy8497 180 EDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 180 SrLeeILs~LppnrQILLLSA 200 (2355)
..+..++..+....++|++.-
T Consensus 191 ~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 191 AQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHHHHhhcCCCCEEEEeCC
Confidence 677788888888888776543
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0023 Score=82.02 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC--CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEE
Q psy8497 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV--QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVD 123 (2355)
Q Consensus 46 PYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~--qggRVLILVPTRALAqQ~anwLREFgk~APgLrVV 123 (2355)
++|+.++..++..+-+||.++.|+|||.+.. .++..|..... ...++++++||--.+..+.+.+....... ..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l---~~- 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL---AA- 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc---cc-
Confidence 7999999999999889999999999996533 44444442111 12579999999988777777665533221 00
Q ss_pred EEECCccccCCCCCCcEEEECHHHHHHHHH------hhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 124 YFIGGTQVERPKRPVQIVVGSPGRIKQMIK------LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 124 vytGGkq~rkqirq~DILVTTPErLLDLLd------rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
. . .......+-..|..+|+.... ........+++|||||+=++-. ..+..++..++...++|+
T Consensus 223 --~--~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~al~~~~rlIl 291 (586)
T TIGR01447 223 --A--E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLKALPPNTKLIL 291 (586)
T ss_pred --c--h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHHhcCCCCEEEE
Confidence 0 0 000011122445444432211 1112234678999999997542 456677888888899888
Q ss_pred EEe
Q psy8497 198 VSA 200 (2355)
Q Consensus 198 LSA 200 (2355)
+.-
T Consensus 292 vGD 294 (586)
T TIGR01447 292 LGD 294 (586)
T ss_pred ECC
Confidence 765
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00065 Score=85.93 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=54.5
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
.|.+-|.+|+.++...++ .+|.+|.|+|||.+....|...+. .+.++||++|+...+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk----~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK----QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH----cCCeEEEEcCchHHHHHHHHHhc
Confidence 788999999999998865 889999999999877766665555 47899999999999888888644
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0055 Score=71.00 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=71.9
Q ss_pred CCCCCCcHHHHHHHHHHHc---CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 39 NGFVKESPIQMAAFPYVLN---GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLS---GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
.+| .+|+.|.+.+..+.+ +.+.+++.-||.|||.|.+ |++..+.. ....-+.++||. +|..|..+.+..-+.
T Consensus 20 ~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~-Pmla~~LA--dg~~LvrviVpk-~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 20 SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIV-PMLALALA--DGSRLVRVIVPK-ALLEQMRQMLRSRLG 94 (229)
T ss_pred cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHH-HHHHHHHc--CCCcEEEEEcCH-HHHHHHHHHHHHHHH
Confidence 454 789999999999886 4789999999999997755 66665552 223345566665 688898888887554
Q ss_pred ccCCcEEEEEECCccccCC--------------CCCCcEEEECHHHHHHH
Q psy8497 116 HVKNLHVDYFIGGTQVERP--------------KRPVQIVVGSPGRIKQM 151 (2355)
Q Consensus 116 ~APgLrVVvytGGkq~rkq--------------irq~DILVTTPErLLDL 151 (2355)
..-+-.+..+--+...... ...-.|+|+|||.++.+
T Consensus 95 ~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 95 GLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 4434444443332222110 11257999999987644
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.011 Score=79.72 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=79.4
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
..|+ .|++-|.+++..++...+ ++|.+..|+|||.+ +-++...+. ..+..|++++||-..+..+. +-
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e---~~G~~V~~~ApTGkAA~~L~----e~--- 409 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE---AAGYEVRGAALSGIAAENLE----GG--- 409 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH---HcCCeEEEecCcHHHHHHHh----hc---
Confidence 3454 799999999999998655 78999999999965 444544444 24678999999987744332 21
Q ss_pred cCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC-CCCceE
Q psy8497 117 VKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL-PPMKQM 195 (2355)
Q Consensus 117 APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L-ppnrQI 195 (2355)
. ++ --.|...|+.-+......+...++|||||+-++... .+..++... +...++
T Consensus 410 t-Gi--------------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~garv 464 (988)
T PRK13889 410 S-GI--------------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGAKV 464 (988)
T ss_pred c-Cc--------------------chhhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCCEE
Confidence 0 11 112333332212222233556789999999976543 333444432 456788
Q ss_pred EEEEec
Q psy8497 196 LVVSAT 201 (2355)
Q Consensus 196 LLLSAT 201 (2355)
|++.=+
T Consensus 465 VLVGD~ 470 (988)
T PRK13889 465 VLVGDP 470 (988)
T ss_pred EEECCH
Confidence 876654
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.022 Score=56.03 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=24.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
+..++|.+|+|+|||..+. .++..+. .....++++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~-~i~~~~~---~~~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR-AIANELF---RPGAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHhh---cCCCCeEEEehhh
Confidence 5679999999999995433 4444433 2244566655543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.012 Score=77.45 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=75.8
Q ss_pred CCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 43 KESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
.|++-|.+++..++.. +-++|.++.|+|||.+ +-+++..+.. .+..+++++||-..+..+.+. . ++.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~---~g~~V~~~ApTg~Aa~~L~~~---~-----g~~ 419 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA---AGYRVIGAALSGKAAEGLQAE---S-----GIE 419 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh---CCCeEEEEeCcHHHHHHHHhc---c-----CCc
Confidence 6899999999999875 4589999999999955 4345544442 467899999998775443321 1 110
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHh-CCCCceEEEEEe
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ-LPPMKQMLVVSA 200 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~-LppnrQILLLSA 200 (2355)
-.|-..+...+......+...++|||||+-++....+ ..++.. .....++|++.=
T Consensus 420 --------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~----~~Ll~~~~~~~~kliLVGD 475 (744)
T TIGR02768 420 --------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQM----ARVLKEAEEAGAKVVLVGD 475 (744)
T ss_pred --------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCCHHHH----HHHHHHHHhcCCEEEEECC
Confidence 1232333211222223356788999999998764332 333332 234667777663
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0042 Score=70.43 Aligned_cols=122 Identities=13% Similarity=0.099 Sum_probs=75.9
Q ss_pred CcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEE
Q psy8497 44 ESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVD 123 (2355)
Q Consensus 44 LRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVV 123 (2355)
|++-|.+++.. ...+++|.|..|+|||.+.+.-++..|........++|+|++|+..+.++.+.+............
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~- 77 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESS- 77 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCT-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccccc-
Confidence 57889999987 667899999999999988776666666654456678999999999999999999886433200000
Q ss_pred EEECCccc-cCCCCCCcEEEECHHHHHHHHHhhcccC--cCceEEEecccc
Q psy8497 124 YFIGGTQV-ERPKRPVQIVVGSPGRIKQMIKLKYLNM--DSVRLFIMDEAD 171 (2355)
Q Consensus 124 vytGGkq~-rkqirq~DILVTTPErLLDLLdrr~LdL--SkIdLLIVDEAH 171 (2355)
..... ........+.|+|...+...+-...... ..-.+-|+|+..
T Consensus 78 ---~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 78 ---DNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ---T-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ---ccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00000 0000114578999887765443322221 123456777776
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.004 Score=68.95 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=55.2
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
.++.+|||+|||..++-.+. .+. ..+.+++|+.|.-.- ......+...+ | ... ..+
T Consensus 5 ~litG~~GsGKTT~~l~~~~-~~~---~~g~~v~i~k~~~d~----~~~~~~i~~~l---------g-~~~------~~~ 60 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAY-NYE---ERGMKVLVFKPAIDD----RYGEGKVVSRI---------G-LSR------EAI 60 (190)
T ss_pred EEEECCCCCHHHHHHHHHHH-HHH---HcCCeEEEEeccccc----cccCCcEecCC---------C-Ccc------cce
Confidence 67899999999966554444 333 236678888663111 00000010000 1 000 112
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
.+...+.+...+.. ....+++|||||+|.+.. ..+..++..+......+++++
T Consensus 61 ~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~~----~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 61 PVSSDTDIFELIEE---EGEKIDCVLIDEAQFLDK----EQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred EeCChHHHHHHHHh---hCCCCCEEEEEccccCCH----HHHHHHHHHHHHcCCeEEEEe
Confidence 33444555544433 245688999999986532 334445555333333445554
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.026 Score=66.67 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=66.5
Q ss_pred cHHHHHHH----HHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 45 SPIQMAAF----PYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 45 RPYQeEAL----n~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
...|..++ .|+..+.+++|.+|+|+|||..+.. +...+.. .+..++|+ +...|+.++......
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~---~g~~v~f~-~~~~L~~~l~~a~~~-------- 155 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIE---NGWRVLFT-RTTDLVQKLQVARRE-------- 155 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHH---cCCceeee-eHHHHHHHHHHHHhC--------
Confidence 45666665 4666788999999999999976653 3333332 24455554 455564433221100
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCceEEEEE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~LppnrQILLLS 199 (2355)
.+.+.++.. +..+++|||||++.+.... ....+..++........+|+.|
T Consensus 156 ----------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTS 206 (269)
T PRK08181 156 ----------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITA 206 (269)
T ss_pred ----------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 122222221 3467799999999765433 2345556665543345566666
Q ss_pred eccCh
Q psy8497 200 ATYSH 204 (2355)
Q Consensus 200 ATLS~ 204 (2355)
-.+..
T Consensus 207 N~~~~ 211 (269)
T PRK08181 207 NQPFG 211 (269)
T ss_pred CCCHH
Confidence 55543
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.014 Score=62.87 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCC------ccEEeeCCCCHHHHHHHHHHHhCCC-ccEEEEecccccccCCCC--ccEEEEecCCCC---
Q psy8497 278 PEVICENLANANF------GAEYLSGAQDQKARLASLDSFKRGK-VRILVTTDLAARGIDAAN--VDLVINLEIPHD--- 345 (2355)
Q Consensus 278 AEiLADyLrErGI------KVarLHGgMSqEERqeILErFRSGE-IdVLVSTSALGEGLDLPa--VDTVIIyDSP~S--- 345 (2355)
++.+.+.+...+. ....+.-+....+...+++.|+... ..||++|..+.+|||+|. +.+||+...|+.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 4455555555443 2233444455556788999998654 379999988999999998 578998888862
Q ss_pred ----------------------------HhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 346 ----------------------------AATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 346 ----------------------------PqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
...+.|++||+-|...+-.+|++++.
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12346999999997666656666543
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.011 Score=63.69 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=63.0
Q ss_pred cHHHHHHHHHhcCC---ccEEeeCCCCHHHHHHHHHHHhCCCc---cEEEEecc--cccccCCCC--ccEEEEecCCCC-
Q psy8497 277 RPEVICENLANANF---GAEYLSGAQDQKARLASLDSFKRGKV---RILVTTDL--AARGIDAAN--VDLVINLEIPHD- 345 (2355)
Q Consensus 277 mAEiLADyLrErGI---KVarLHGgMSqEERqeILErFRSGEI---dVLVSTSA--LGEGLDLPa--VDTVIIyDSP~S- 345 (2355)
.++.+.+.+...++ ....+.-.....+...+++.|++..- .||+++.- +.+|||+|. +++||+...|+.
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34555566655433 12222222333355778888886443 68988877 899999998 578999998862
Q ss_pred ---H---------------------------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 346 ---A---------------------------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 346 ---P---------------------------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+ ..+.|++||+-|...+-.+|++++.
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 1 2346999999997777667776654
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.029 Score=69.35 Aligned_cols=124 Identities=18% Similarity=0.094 Sum_probs=69.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHHH-HHHHHHHHHHhcccCCcEEEEEECCccccCCCC
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREIA-VQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRALA-qQ~anwLREFgk~APgLrVVvytGGkq~rkqir 136 (2355)
.+++++|||+|||.+..-.+..........+.++.+|. +.+.-+ .|+..+...+ ++.+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-----gvpv-------------- 236 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM-----GIPV-------------- 236 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC-----Ccce--------------
Confidence 47889999999997655433322221112345565555 333333 3333333222 2211
Q ss_pred CCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCC-ceEEEEEeccChhHHHH
Q psy8497 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPM-KQMLVVSATYSHDNLAT 209 (2355)
Q Consensus 137 q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lppn-rQILLLSATLS~EILEl 209 (2355)
.++-+++.+...+.. +..+++||||++.++.... ....+..++....+. ..+|.|+||........
T Consensus 237 ---~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 237 ---KAIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ---EeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 223355556554432 3578899999999876322 345556666655433 46788999998665543
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.01 Score=58.01 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=41.1
Q ss_pred HHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 51 AFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 51 ALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
++...+.+.. ++|.+|.|+|||.+.+-.+...+......+.++|||+|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3443333334 66799999999966665555554321222778999999999988877777
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.015 Score=67.85 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=61.5
Q ss_pred HHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcc
Q psy8497 51 AFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ 130 (2355)
Q Consensus 51 ALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq 130 (2355)
+..|+..+.+++|.+|+|+|||..+...+. .+.. .+.+++++. ...|+.+ +.... .
T Consensus 91 ~~~fi~~~~nlll~Gp~GtGKThLa~al~~-~a~~---~g~~v~f~t-~~~l~~~----l~~~~--~------------- 146 (254)
T PRK06526 91 TLDFVTGKENVVFLGPPGTGKTHLAIGLGI-RACQ---AGHRVLFAT-AAQWVAR----LAAAH--H------------- 146 (254)
T ss_pred cCchhhcCceEEEEeCCCCchHHHHHHHHH-HHHH---CCCchhhhh-HHHHHHH----HHHHH--h-------------
Confidence 346676778999999999999977664443 3332 344555532 2233222 22110 0
Q ss_pred ccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh-HHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 131 VERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF-VEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 131 ~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF-~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
..+.... +. .+..+++|||||+|.+..... ...+..++........+|++|..+...
T Consensus 147 -----------~~~~~~~---l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 147 -----------AGRLQAE---LV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred -----------cCcHHHH---HH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 0111111 11 134568999999997653222 234555554433334577777766544
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=72.13 Aligned_cols=142 Identities=15% Similarity=0.244 Sum_probs=86.1
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 37 QENGFVKESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 37 qa~GF~eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..||+.....+|.-|+..|+... =|.+.+.-|+|||+.++.+.+....... .-.++||.=|+..+-+.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG~d--------- 291 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVGED--------- 291 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCcccc---------
Confidence 45899999999999999998764 3888999999999999988888776422 23456666677655211
Q ss_pred cccCCcEEEEEECCccccCCCCC-----------CcEEEECHHHHHHHHHhhcccC----------cCceEEEecccchh
Q psy8497 115 AHVKNLHVDYFIGGTQVERPKRP-----------VQIVVGSPGRIKQMIKLKYLNM----------DSVRLFIMDEADKL 173 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~rkqirq-----------~DILVTTPErLLDLLdrr~LdL----------SkIdLLIVDEAHRL 173 (2355)
+..+-|... ++.... +..-=++-+.|...+.+..+.+ ..-.+||||||+.|
T Consensus 292 -------IGfLPG~eE-eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 292 -------IGFLPGTEE-EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred -------cCcCCCchh-hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 111111111 110000 0111112223333333322211 11248999999987
Q ss_pred cccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 174 INTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 174 kN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
-. ..+..|+...-...+|+++.-
T Consensus 364 Tp----heikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 364 TP----HELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred CH----HHHHHHHHhccCCCEEEEcCC
Confidence 53 678889999888888887543
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.023 Score=57.44 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=12.7
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
++.++|.||+|+|||.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3458999999999996544
|
|
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.016 Score=76.19 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=50.5
Q ss_pred CCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcC-------------------------------
Q psy8497 43 KESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLP------------------------------- 87 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr------------------------------- 87 (2355)
+|++.|..-+..++. ..++++..|||+|||+..+-..|.+.....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 788899887766654 578999999999999876655555443210
Q ss_pred -------CCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 88 -------VQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 88 -------~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
...++++|-.=|-.-..|+.+++++..-.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 01234555556666678888888876433
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.033 Score=71.09 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=73.4
Q ss_pred EEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH-hcccCCcEEEEEECCcc--------ccC
Q psy8497 63 VQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV-GAHVKNLHVDYFIGGTQ--------VER 133 (2355)
Q Consensus 63 LAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF-gk~APgLrVVvytGGkq--------~rk 133 (2355)
..+.||+|||++....||.+..+ .-..+|+.|....++.-...-+-.- .... -+.-.+.+++.. ...
T Consensus 2 f~matgsgkt~~ma~lil~~y~k---gyr~flffvnq~nilekt~~nftd~~s~ky-lf~e~i~~~d~~i~ikkvn~fse 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK---GYRNFLFFVNQANILEKTKLNFTDSVSSKY-LFSENININDENIEIKKVNNFSE 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh---chhhEEEEecchhHHHHHHhhcccchhhhH-hhhhhhhcCCceeeeeeecccCc
Confidence 45789999999888777766552 2334777776655543332222110 0000 000011112211 111
Q ss_pred CCCCCcEEEECHHHHHHHHHhhccc------CcCce-EEEecccchhccc-------------ChHHHHHHHHHhCCCCc
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKLKYLN------MDSVR-LFIMDEADKLINT-------------GFVEDITWIYSQLPPMK 193 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdrr~Ld------LSkId-LLIVDEAHRLkN~-------------GF~SrLeeILs~Lppnr 193 (2355)
......|+++|.+.|...+.+..-. +.... +++-||+|+|-.. .+.+.+...+. -.+..
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nkd~ 156 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNKDN 156 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCCCc
Confidence 2233779999999987666542211 12222 5688999997421 12232222222 23345
Q ss_pred eEEEEEeccChhHHHHHHH
Q psy8497 194 QMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 194 QILLLSATLS~EILElLkK 212 (2355)
-+|.+|||.+ .......+
T Consensus 157 ~~lef~at~~-k~k~v~~k 174 (812)
T COG3421 157 LLLEFSATIP-KEKSVEDK 174 (812)
T ss_pred eeehhhhcCC-ccccHHHH
Confidence 6777899887 33333333
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.01 Score=57.47 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=26.3
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
+..++|.+|+|+|||.+.. .++..+.. ....++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~-~l~~~~~~---~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR-ALARELGP---PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHH-HHHhccCC---CCCCEEEECCEEcc
Confidence 3568999999999995544 33333331 11357888877654
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.046 Score=74.57 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=77.0
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 42 VKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
..|++-|.+++..+... +-++|.++-|+|||.+ +-++...+. ..+.+|+.++|+-..+..+ .+.. ++
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e---~~G~~V~g~ApTgkAA~~L----~e~~----Gi 447 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWE---AAGYRVVGGALAGKAAEGL----EKEA----GI 447 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHH---HcCCeEEEEcCcHHHHHHH----HHhh----CC
Confidence 37999999999988654 4489999999999944 445555544 3577899999998775443 3221 11
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC-CCceEEEEE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQMLVVS 199 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-pnrQILLLS 199 (2355)
. -.|...|+..+......+..-++|||||+-++... .+..++.... ...++|++.
T Consensus 448 ~--------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~~----~m~~Ll~~~~~~garvVLVG 503 (1102)
T PRK13826 448 Q--------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVASR----QMALFVEAVTRAGAKLVLVG 503 (1102)
T ss_pred C--------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEEC
Confidence 1 12322221111112223455679999999976543 3444455443 467788776
Q ss_pred ec
Q psy8497 200 AT 201 (2355)
Q Consensus 200 AT 201 (2355)
-+
T Consensus 504 D~ 505 (1102)
T PRK13826 504 DP 505 (1102)
T ss_pred CH
Confidence 54
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.057 Score=65.68 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=76.8
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc---HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT---REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT---RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++.+++|+|||.+.. .+...+.. .+.+++++..- ...+.|+..+...++ +.+.. +...
T Consensus 143 i~~~G~~GvGKTTtia-kLA~~l~~---~g~~V~li~~Dt~R~~a~eqL~~~a~~lg-----v~v~~--~~~g------- 204 (336)
T PRK14974 143 IVFVGVNGTGKTTTIA-KLAYYLKK---NGFSVVIAAGDTFRAGAIEQLEEHAERLG-----VKVIK--HKYG------- 204 (336)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHHHH---cCCeEEEecCCcCcHHHHHHHHHHHHHcC-----Cceec--ccCC-------
Confidence 7789999999996544 33344442 34567666643 355567666666553 22211 0000
Q ss_pred CcEEEECHHH-HHHHHHhhcccCcCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhc
Q psy8497 138 VQIVVGSPGR-IKQMIKLKYLNMDSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214 (2355)
Q Consensus 138 ~DILVTTPEr-LLDLLdrr~LdLSkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfL 214 (2355)
..|.. +.+.+... ....+++||||.+.++.. ..+...+..+...+.+..-++.++||...+....+..|.
T Consensus 205 -----~dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 205 -----ADPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred -----CCHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 01111 22222211 124567999999998863 335566777777777777889999998877776666553
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.016 Score=68.85 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=53.8
Q ss_pred HHHHHHhCCCccEEEEecccccccCCCC--------ccEEEEecCCCCHhHHHHHhhccCCCCCcc-EEEEEE
Q psy8497 306 ASLDSFKRGKVRILVTTDLAARGIDAAN--------VDLVINLEIPHDAATYLHRMGRAGRYGTRG-LVITIV 369 (2355)
Q Consensus 306 eILErFRSGEIdVLVSTSALGEGLDLPa--------VDTVIIyDSP~SPqSYIQRIGRAGRiGQkG-kVIVLV 369 (2355)
...+.|.+|+..|+|.+.+++.||.|.+ -++-|.+.+||+....+|..||+||.||.. ..++++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 4567899999999999999999999875 346788999999999999999999999743 344444
|
|
| >KOG0298|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0069 Score=81.47 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=89.1
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
..++.+--.....++|||++-....+.++..+...++......+ .++-...+..|.. --++||-+..++-|+|+-+
T Consensus 1210 ~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~e 1285 (1394)
T KOG0298|consen 1210 IAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIE 1285 (1394)
T ss_pred HHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHh
Confidence 33344433444569999999999999999888877776655443 3455566777766 3356888899999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEE--EEEcccCHH
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI--TIVSAESLV 375 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVI--VLVSsdDVE 375 (2355)
+.+|+..++-.|+..-.|++||++|+||+..++ .|+-..+++
T Consensus 1286 A~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvE 1329 (1394)
T KOG0298|consen 1286 ATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVE 1329 (1394)
T ss_pred hhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchH
Confidence 999999999999999999999999999766544 444444443
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.082 Score=67.76 Aligned_cols=152 Identities=11% Similarity=0.059 Sum_probs=87.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE-
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH- 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr- 121 (2355)
.|.|+|.+.+..+...+-.+|..+=..|||.+..+.++..+.. ..+..+++++|+...+..+.+.++.+....|.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~--~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~ 136 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF--NKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQ 136 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhh
Confidence 6899999999988666667888899999998766444433332 3456899999999999888888887655554321
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC--CceEEEEE
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP--MKQMLVVS 199 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp--nrQILLLS 199 (2355)
..+.......-.......|.+.|-.. ....-....++||||+|.+.+. ...+..+...+.. ..+++++|
T Consensus 137 ~~i~~~~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg~~~r~iiiS 207 (534)
T PHA02533 137 PGIVEWNKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPNF--IDFWLAIQPVISSGRSSKIIITS 207 (534)
T ss_pred cceeecCccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCCH--HHHHHHHHHHHHcCCCceEEEEE
Confidence 11111111000011123343333210 1112334568999999987652 2333333333322 24566666
Q ss_pred eccChh
Q psy8497 200 ATYSHD 205 (2355)
Q Consensus 200 ATLS~E 205 (2355)
+....+
T Consensus 208 Tp~G~n 213 (534)
T PHA02533 208 TPNGLN 213 (534)
T ss_pred CCCchh
Confidence 654433
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.17 Score=63.19 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=68.8
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
+.++|++|||+|||.+....+...... ..+.++++|. |.+. .+.|+..|.+.+. +.+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~--~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-----vp~------------- 281 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALL--YGKKKVALITLDTYRIGAVEQLKTYAKIMG-----IPV------------- 281 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEECCccHHHHHHHHHHHHHHhC-----Cce-------------
Confidence 457889999999997655443333201 1244566555 3332 3344444444332 111
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHH-hCCCCceEEEEEeccChhHHHHHHH
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYS-QLPPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs-~LppnrQILLLSATLS~EILElLkK 212 (2355)
.++.++..+...+.. +..+++||||-+-+.... .....+..++. ...+...+|+++||........+..
T Consensus 282 ----~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~ 352 (424)
T PRK05703 282 ----EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYK 352 (424)
T ss_pred ----EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHH
Confidence 223445555554432 336789999998664322 12344555555 2233455788999988766655443
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.041 Score=71.55 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 42 VKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
..|.+.|.+|+..++.. ..+||.+|+|+|||.+.+ .++..+.. .+.+||+++|+...+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~---~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVK---RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHH---cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46899999999999876 568999999999996655 44434432 3568999999999988888887764
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.063 Score=67.30 Aligned_cols=150 Identities=16% Similarity=0.117 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHc-----C----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 46 PIQMAAFPYVLN-----G----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 46 PYQeEALn~LLS-----G----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
|+|.-.+..++. + +.++|.-|=+-|||......++..|.-....+..++++++++..+..+++.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 688888888773 1 2388889999999976655555444423345678999999999999999999998776
Q ss_pred cCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHH--HhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCce
Q psy8497 117 VKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMI--KLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ 194 (2355)
Q Consensus 117 APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLL--drr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQ 194 (2355)
.|.+....-..-... ....|.......++..+ ......-....++|+||+|.+.+...+..+..-.... ++.+
T Consensus 81 ~~~l~~~~~~~~~~~----~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r-~~pl 155 (477)
T PF03354_consen 81 SPELRKRKKPKIIKS----NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR-PNPL 155 (477)
T ss_pred Chhhccchhhhhhhh----hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC-CCce
Confidence 655542110000000 00111111111110000 1122233456799999999988754444444444433 3455
Q ss_pred EEEEEe
Q psy8497 195 MLVVSA 200 (2355)
Q Consensus 195 ILLLSA 200 (2355)
++++|.
T Consensus 156 ~~~IST 161 (477)
T PF03354_consen 156 IIIIST 161 (477)
T ss_pred EEEEeC
Confidence 555543
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.23 Score=62.32 Aligned_cols=128 Identities=18% Similarity=0.286 Sum_probs=71.9
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
+.++|++|+|+|||......+. .+. ..+.+++++.. .+ ..+.|+..+..... +.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lg-----ipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIG-----FEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcC-----CcE-------------
Confidence 3578999999999966554443 443 23455665553 33 34455554444321 111
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCceEEEEEeccChhH-HHHHHHh
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDN-LATLQKY 213 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~LppnrQILLLSATLS~EI-LElLkKf 213 (2355)
+++.++..|.+.+..-. ....+++||||-+=+..... ....+..++....+..-+|.+|||..... ...+..|
T Consensus 300 ----~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 300 ----IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred ----EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 22346776765553211 11257899999987754322 34555555555545545677999877544 4444443
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.074 Score=60.01 Aligned_cols=128 Identities=17% Similarity=0.289 Sum_probs=72.3
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++|||+|||.+..-.+. ++... +.++.+|+- .| .-+.|+....+.+. +.+.. -...
T Consensus 4 i~lvGptGvGKTTt~aKLAa-~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~-----vp~~~--~~~~------- 65 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAA-RLKLK---GKKVALISADTYRIGAVEQLKTYAEILG-----VPFYV--ARTE------- 65 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHT-----EEEEE--SSTT-------
T ss_pred EEEECCCCCchHhHHHHHHH-HHhhc---cccceeecCCCCCccHHHHHHHHHHHhc-----cccch--hhcc-------
Confidence 67899999999966554443 43321 555666652 22 44455555555542 22111 0000
Q ss_pred CcEEEECHHH-HHHHHHhhcccCcCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 138 VQIVVGSPGR-IKQMIKLKYLNMDSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTPEr-LLDLLdrr~LdLSkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..|.. +...+.. +....+++|+||-+-+... ......+..++..+.+..-++.++||........+..+
T Consensus 66 -----~~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 66 -----SDPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp -----SCHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred -----hhhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 01222 2233321 1234578999999987543 23456677777777777778899999998877666554
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.22 Score=50.92 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=25.6
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
++|.+++|+|||.... .++..+. ..+.+++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~-~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLAL-QLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHH-HHHHHHH---hcCCEEEEEECCcch
Confidence 5889999999996544 4444443 246778888765444
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >KOG1131|consensus | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.061 Score=67.91 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=41.3
Q ss_pred CCCCCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 39 NGFVKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
+.|...+|-|.+=.-.+.+ +.++||.+|+|+|||+..+..++.+..+.+....+.||..-|.
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTv 77 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTV 77 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcc
Confidence 3455678888776655543 4569999999999997766666655555444445566655443
|
|
| >KOG1513|consensus | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.027 Score=73.06 Aligned_cols=158 Identities=14% Similarity=0.184 Sum_probs=97.3
Q ss_pred CCCCCcHHHHHHHHHHHcCC----------cEEEEccCCchH--HHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHH
Q psy8497 40 GFVKESPIQMAAFPYVLNGY----------DAIVQSKSGTGK--SIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQIT 107 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGR----------NVILAAPTGSGK--TLVALIAILerL~ekr~qggRVLILVPTRALAqQ~a 107 (2355)
.-..|...|++++-.+.+.+ ..+|.+..|.|| |++ .+.+-.+|. ..+++|++.-+..|--...
T Consensus 261 ~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvA-giIfeNyLk----GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 261 DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVA-GIIFENYLK----GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeE-EEEehhhhc----ccceeEEEEeccccccchh
Confidence 33478899999998877532 367777766666 533 223333443 4678999999999977777
Q ss_pred HHHHHHhcccCCcEEEEEECCccc----c-CCCCCCcEEEECHHHHHHHHHh-------hc-----ccCcCc-eEEEecc
Q psy8497 108 DVVRSVGAHVKNLHVDYFIGGTQV----E-RPKRPVQIVVGSPGRIKQMIKL-------KY-----LNMDSV-RLFIMDE 169 (2355)
Q Consensus 108 nwLREFgk~APgLrVVvytGGkq~----r-kqirq~DILVTTPErLLDLLdr-------r~-----LdLSkI-dLLIVDE 169 (2355)
+.++.++. ++|.|..+.--+-. . ...-.-.||++||..|.--... ++ |.-..+ ++||+||
T Consensus 336 RDL~DigA--~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDE 413 (1300)
T KOG1513|consen 336 RDLRDIGA--TGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDE 413 (1300)
T ss_pred hchhhcCC--CCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehh
Confidence 77777653 35555544321110 0 1111256999999876532221 01 111112 5899999
Q ss_pred cchhccc---------ChHHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 170 ADKLINT---------GFVEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 170 AHRLkN~---------GF~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
||+.++. ....-+..+-..|| ..++++-|||-..+
T Consensus 414 CHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsE 457 (1300)
T KOG1513|consen 414 CHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASE 457 (1300)
T ss_pred hhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCC
Confidence 9998762 13455666666675 78899999986543
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.078 Score=64.49 Aligned_cols=60 Identities=30% Similarity=0.367 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHHH------HcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHH
Q psy8497 43 KESPIQMAAFPYV------LNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 43 eLRPYQeEALn~L------LSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~ 106 (2355)
+|++-|++++..+ ..+..++|.++-|+|||.++- ++...+. ..+..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~---~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLR---SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhc---cccceEEEecchHHHHHhc
Confidence 4788899999888 456789999999999996543 3333433 2467899999998775444
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.17 Score=62.54 Aligned_cols=128 Identities=16% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH---HHHHHHHHHHHHHhcccCCcEEEEEECCccccCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR---EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP 134 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR---ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq 134 (2355)
+..++|++|||+|||......+...+.. ....++.+|..-. .-+.|+..+.+.+ ++.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~--~G~~~V~lit~D~~R~ga~EqL~~~a~~~-----gv~~------------ 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR--FGASKVALLTTDSYRIGGHEQLRIFGKIL-----GVPV------------ 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEecccccccHHHHHHHHHHHc-----CCce------------
Confidence 3458899999999997655444333321 1123455544221 1223443333333 1111
Q ss_pred CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh-HHHHHHHHHhCCCCceEEEEEeccChhHHHH-HHH
Q psy8497 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF-VEDITWIYSQLPPMKQMLVVSATYSHDNLAT-LQK 212 (2355)
Q Consensus 135 irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF-~SrLeeILs~LppnrQILLLSATLS~EILEl-LkK 212 (2355)
..+.++..+...+. .+...++|+||.+=+.....+ ...+..+.....+...+|.++||........ +..
T Consensus 198 -----~~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~ 268 (374)
T PRK14722 198 -----HAVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQA 268 (374)
T ss_pred -----EecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHH
Confidence 22333333433332 245568999999976532222 2222222222233456888999988766543 344
Q ss_pred h
Q psy8497 213 Y 213 (2355)
Q Consensus 213 f 213 (2355)
|
T Consensus 269 f 269 (374)
T PRK14722 269 Y 269 (374)
T ss_pred H
Confidence 4
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.039 Score=73.31 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 40 GFVKESPIQMAAFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
-+..|+.-|++|+-.++.-++ .+|.+=.|+|||.+.. .++..|. ..+++||+.+=|-..+..+.-.++.+...+
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~---~~gkkVLLtsyThsAVDNILiKL~~~~i~~- 740 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILV---ALGKKVLLTSYTHSAVDNILIKLKGFGIYI- 740 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHH---HcCCeEEEEehhhHHHHHHHHHHhccCcce-
Confidence 345889999999999888766 7888889999996544 4444444 357889999998888777776666653222
Q ss_pred CcEEEEEECCcc-cc---------------------CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 119 NLHVDYFIGGTQ-VE---------------------RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 119 gLrVVvytGGkq-~r---------------------kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
+-.|... .. .......||.+|=--+.+. .+..+.|+++|||||-.+..
T Consensus 741 -----lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 741 -----LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----LFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred -----eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch----hhhccccCEEEEcccccccc
Confidence 1112211 00 1122356777773222222 23456789999999997653
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.11 Score=68.07 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
..|++-|.+++.. ....++|.|..|+|||.+.+.-+...+.........+|+|+.|+..|.++.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~---- 76 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS---- 76 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc----
Confidence 4689999999874 3467999999999999876655554443333456679999999999999999998874210
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhccc-C-cCceEEEecccch
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLN-M-DSVRLFIMDEADK 172 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~Ld-L-SkIdLLIVDEAHR 172 (2355)
...+.|+|...|...+.+.... . ..-.+-|+|+...
T Consensus 77 ---------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ---------------ARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDDQ 114 (715)
T ss_pred ---------------ccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 1247899998875433322111 0 1123567787654
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.1 Score=56.05 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=33.5
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
++|.+|+|+|||..++-.+...+. .+.+++|+... +-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----~g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----RGEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----CCCcEEEEECC-CCHHHHHHHHHHcC
Confidence 689999999999776655554443 36778888754 44455666666653
|
A related protein is found in archaea. |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.29 Score=69.89 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=74.4
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHHhc-CCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIKL-PVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ek-r~qggRVLILVPTRALAqQ~anwLREFgk~APg 119 (2355)
.|++.|.+++..++... -++|.+..|+|||.+ +-.++..+... ...+..++.++||-..+..+. +.+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e~G----- 1036 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----SAG----- 1036 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----hcC-----
Confidence 68999999999999753 489999999999954 33444444321 123567888999988755433 221
Q ss_pred cEEEEEECCccccCCCCCCcEEEECHHHHHHHHH----hhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC-Cce
Q psy8497 120 LHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIK----LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP-MKQ 194 (2355)
Q Consensus 120 LrVVvytGGkq~rkqirq~DILVTTPErLLDLLd----rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp-nrQ 194 (2355)
+. ..|..+|+.... ........-++|||||+=++... .+..++..++. ..+
T Consensus 1037 i~--------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~~----~m~~Ll~~~~~~gar 1092 (1747)
T PRK13709 1037 VD--------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNT----DMARAYALIAAGGGR 1092 (1747)
T ss_pred cc--------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccccccHH----HHHHHHHhhhcCCCE
Confidence 11 123222221110 00111234479999999976543 34444444443 577
Q ss_pred EEEEEec
Q psy8497 195 MLVVSAT 201 (2355)
Q Consensus 195 ILLLSAT 201 (2355)
+|++.-+
T Consensus 1093 vVLVGD~ 1099 (1747)
T PRK13709 1093 AVSSGDT 1099 (1747)
T ss_pred EEEecch
Confidence 8876654
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.21 Score=70.46 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhc-CCCCCeEEEEcccHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKL-PVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ek-r~qggRVLILVPTRALAqQ~ 106 (2355)
.|++-|.+++..++.. +-++|.+..|+|||.+. -.++..+... ...+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 7899999999999865 55999999999999653 2333332211 12456788999998885544
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.36 Score=56.97 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=26.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
.++|.+++|+|||..+. ++...+.. .+.+++++ +...|+
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~---~~~~v~~~-~~~~ll 154 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE---KGVPVIFV-NFPQLL 154 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH---cCCeEEEE-EHHHHH
Confidence 49999999999997765 56666653 24455554 445553
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.4 Score=60.00 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=74.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc-c-cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA-P-TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV-P-TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
++-++|++|||.|||.+..-.+..+... ....+|-||. - .|.=|..+..+..++. ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~--~~~~kVaiITtDtYRIGA~EQLk~Ya~im----~v--------------- 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML--KKKKKVAIITTDTYRIGAVEQLKTYADIM----GV--------------- 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh--ccCcceEEEEeccchhhHHHHHHHHHHHh----CC---------------
Confidence 4558899999999996654444444321 2334444444 2 2322222233333321 11
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc-ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI-NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk-N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
+=.++.+|.-|...+. .+..+++|.||=+=+-. +......+..++.......-.|.||||....++..+-
T Consensus 262 --p~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 262 --PLEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred --ceEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 1256777877766553 45677899999876532 3335566666666665566678899998876665443
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.24 Score=60.04 Aligned_cols=136 Identities=10% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCcHHHHHHHHHHHcCC----cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh-ccc
Q psy8497 43 KESPIQMAAFPYVLNGY----DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG-AHV 117 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGR----NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg-k~A 117 (2355)
.++|||...+..+.... ..|+.+|.|.|||..+...+-..+.+...... -|.. ...++.+. ...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~----~Cg~-------C~sC~~~~~g~H 71 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG----ACGS-------CKGCQLLRAGSH 71 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC----CCCC-------CHHHHHHhcCCC
Confidence 46899999999888653 37899999999997665444333322111111 1111 12222221 223
Q ss_pred CCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcc--cCcCceEEEecccchhcccChHHHHHHHHHhCCCCceE
Q psy8497 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYL--NMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~L--dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQI 195 (2355)
|++..+.-.+... .| .-+.+..+...-.. ....+.++||||+|+|.... ...+.++++.-+....+
T Consensus 72 PD~~~i~~~~~~~--------~i---~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~~f 139 (328)
T PRK05707 72 PDNFVLEPEEADK--------TI---KVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDTVL 139 (328)
T ss_pred CCEEEEeccCCCC--------CC---CHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCeEE
Confidence 3433322111100 01 12334433322111 23567899999999986432 35555566654444555
Q ss_pred EEEEec
Q psy8497 196 LVVSAT 201 (2355)
Q Consensus 196 LLLSAT 201 (2355)
|++|..
T Consensus 140 iL~t~~ 145 (328)
T PRK05707 140 LLISHQ 145 (328)
T ss_pred EEEECC
Confidence 544443
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.26 Score=71.23 Aligned_cols=135 Identities=14% Similarity=0.133 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
.|.+-|.+++..++... =+||.++.|+|||.+ +-.++..+. ..+..|++++|+...+..+.+..... . .
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~---~~G~~V~~lAPTgrAA~~L~e~~g~~---A--~ 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLAS---EQGYEIQIITAGSLSAQELRQKIPRL---A--S 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHH---hcCCeEEEEeCCHHHHHHHHHHhcch---h--h
Confidence 68999999999998763 489999999999944 445555544 34788999999988765555432210 0 0
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC-CCCceEEEEE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL-PPMKQMLVVS 199 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L-ppnrQILLLS 199 (2355)
.+..+.. ... -.....|...|+ .....+..-++|||||+-++.. ..+..++... +...++|++.
T Consensus 500 Ti~~~l~-----~l~--~~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~garvVlvG 564 (1960)
T TIGR02760 500 TFITWVK-----NLF--NDDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNSKLILLN 564 (1960)
T ss_pred hHHHHHH-----hhc--ccccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCCEEEEEc
Confidence 0000000 000 001122222232 1222345678999999997653 3455555544 4578888877
Q ss_pred ec
Q psy8497 200 AT 201 (2355)
Q Consensus 200 AT 201 (2355)
-+
T Consensus 565 D~ 566 (1960)
T TIGR02760 565 DS 566 (1960)
T ss_pred Ch
Confidence 64
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.14 Score=67.27 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
..|++-|.+++.. ....++|.|..|+|||.+.+.-+...+.........+|+|+-|+..|.++.+.+.++....
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~---- 81 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS---- 81 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC----
Confidence 3699999999874 3457999999999999876655554443233455679999999999999999998874210
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhccc--CcCceEEEecccch
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLN--MDSVRLFIMDEADK 172 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~Ld--LSkIdLLIVDEAHR 172 (2355)
...+.|+|...|...+.+.... ...-.+-|+|+.+.
T Consensus 82 ---------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 119 (721)
T PRK11773 82 ---------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQ 119 (721)
T ss_pred ---------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 1247789998875433322111 11123567887764
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.55 Score=55.17 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=57.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
..++|.+++|+|||..+. ++...+.. .+..++|+ +...| ...++......
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~---~g~~v~~i-t~~~l----~~~l~~~~~~~--------------------- 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL---RGKSVLII-TVADI----MSAMKDTFSNS--------------------- 149 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh---cCCeEEEE-EHHHH----HHHHHHHHhhc---------------------
Confidence 468999999999997655 55555553 34556555 44344 33333211000
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHH-HHHHHHHhC-CCCceEEEEEeccC
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVE-DITWIYSQL-PPMKQMLVVSATYS 203 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~S-rLeeILs~L-ppnrQILLLSATLS 203 (2355)
-.+.+.++.. +..+++|||||++......+.. .+..|+... .....+|++|--..
T Consensus 150 ---~~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~ 206 (244)
T PRK07952 150 ---ETSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNM 206 (244)
T ss_pred ---cccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCH
Confidence 0123333222 3467899999999876443333 344455543 23455666555433
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.37 Score=60.17 Aligned_cols=106 Identities=14% Similarity=0.253 Sum_probs=56.1
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
..++|.||+|+|||.... ++...+.. ...+..++++ +...+..++...+..
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~-~~~~~~v~yi-~~~~~~~~~~~~~~~-------------------------- 199 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILE-KNPNAKVVYV-TSEKFTNDFVNALRN-------------------------- 199 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH-hCCCCeEEEE-EHHHHHHHHHHHHHc--------------------------
Confidence 348999999999996654 45555543 1224556666 444554333332211
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCC-CCceEEEEEeccChh
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLP-PMKQMLVVSATYSHD 205 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lp-pnrQILLLSATLS~E 205 (2355)
.+.+.+... +..+++|||||+|.+.... ....+..++..+. ...++| ++++.++.
T Consensus 200 ----~~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~ii-its~~~p~ 256 (450)
T PRK00149 200 ----NTMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIV-LTSDRPPK 256 (450)
T ss_pred ----CcHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEE-EECCCCHH
Confidence 011223222 2357799999999876432 2234444444432 234554 45554433
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.35 Score=63.63 Aligned_cols=145 Identities=10% Similarity=0.108 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHH---cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc------
Q psy8497 45 SPIQMAAFPYVL---NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA------ 115 (2355)
Q Consensus 45 RPYQeEALn~LL---SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk------ 115 (2355)
.|.=.+-|+.++ +++-.++.+|-|.|||.+..+.++..+. ..+.+++|++|...-+.++.+.++.+..
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~---f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMIS---FLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHH---hcCCeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 444444444443 4566888999999999766545443332 1357899999999888888888777653
Q ss_pred ccCCc-EEEEEECCccc-cCC----CC--CCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHH
Q psy8497 116 HVKNL-HVDYFIGGTQV-ERP----KR--PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187 (2355)
Q Consensus 116 ~APgL-rVVvytGGkq~-rkq----ir--q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs 187 (2355)
|.+.. .+..+.|+... .-. .. ...|...+.. .....-..+++||||||+.+... .+..++-
T Consensus 248 ~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~~----~l~aIlP 316 (752)
T PHA03333 248 WFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNPG----ALLSVLP 316 (752)
T ss_pred ccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCHH----HHHHHHH
Confidence 34332 22223333221 000 00 0112222111 12223345689999999988753 3333333
Q ss_pred hCC-CCceEEEEEeccC
Q psy8497 188 QLP-PMKQMLVVSATYS 203 (2355)
Q Consensus 188 ~Lp-pnrQILLLSATLS 203 (2355)
.+. ...++|++|.+..
T Consensus 317 ~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 317 LMAVKGTKQIHISSPVD 333 (752)
T ss_pred HHccCCCceEEEeCCCC
Confidence 333 3566677777653
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.3 Score=57.29 Aligned_cols=47 Identities=9% Similarity=0.223 Sum_probs=30.0
Q ss_pred HHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 52 FPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 52 Ln~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
+.++.++.+++|.+|+|+|||..+..... .+. ..+..++++. ...|.
T Consensus 96 ~~~i~~~~~v~l~Gp~GtGKThLa~al~~-~a~---~~G~~v~~~~-~~~l~ 142 (259)
T PRK09183 96 LSFIERNENIVLLGPSGVGKTHLAIALGY-EAV---RAGIKVRFTT-AADLL 142 (259)
T ss_pred CCchhcCCeEEEEeCCCCCHHHHHHHHHH-HHH---HcCCeEEEEe-HHHHH
Confidence 34566788899999999999976654433 222 1355666653 34453
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.51 Score=63.60 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHc----C---CcE-EEEccCCchHHHHHHHHHHHHHH
Q psy8497 45 SPIQMAAFPYVLN----G---YDA-IVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 45 RPYQeEALn~LLS----G---RNV-ILAAPTGSGKTLVALIAILerL~ 84 (2355)
|.-|.+.|..++. + .++ +|.|++|+|||.+.- .++..|.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK-~VLrELq 806 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVY-SVIQLLQ 806 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5666665544432 2 234 599999999996654 5555554
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.34 Score=65.12 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=28.7
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+++|||||+|+|.... ...|.++++..+....+||++
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3578899999999987543 355666777766666666665
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.32 Score=54.07 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.2
Q ss_pred CCcEEEEccCCchHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVV 77 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALI 77 (2355)
...++|.+|+|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45699999999999966553
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.76 Score=56.08 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=56.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
..+++|.|++|+|||..+. ++...+.. .+..|+| ++...|+.++... .+. . .
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~---~g~~V~y-~t~~~l~~~l~~~--~~~-~---------------~----- 234 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD---RGKSVIY-RTADELIEILREI--RFN-N---------------D----- 234 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH---CCCeEEE-EEHHHHHHHHHHH--Hhc-c---------------c-----
Confidence 5789999999999997665 44455542 3445555 4555563333221 010 0 0
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh-HHHHHHHHHhCC-CCceEEEEEeccC
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF-VEDITWIYSQLP-PMKQMLVVSATYS 203 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF-~SrLeeILs~Lp-pnrQILLLSATLS 203 (2355)
.+ ....+ -.+..+++||||+.+......+ ...+..++.... ....+|+.|-..+
T Consensus 235 -------~~-~~~~~----~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~ 290 (329)
T PRK06835 235 -------KE-LEEVY----DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSL 290 (329)
T ss_pred -------hh-HHHHH----HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCH
Confidence 00 00001 1245678999999987654433 345556665543 2345555444433
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.44 Score=62.61 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=81.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc-ccCCcEEEEEECCcccc-CCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA-HVKNLHVDYFIGGTQVE-RPK 135 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk-~APgLrVVvytGGkq~r-kqi 135 (2355)
++-.++..|--.|||.+.. +++..+. ....+..++|++|....+..+.+.+..+.. |.++..+..+.|. ... ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll-~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~ 330 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALAL-ATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFP 330 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHH-HhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEec
Confidence 4557889999999998655 3333333 123578899999999999999988887643 4444334333442 220 000
Q ss_pred CC--CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 136 RP--VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 136 rq--~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
.. .-|.+.| ........-..+++||||||+.+....+...+ .++. ....++|++|.|...
T Consensus 331 nG~kstI~FaS------arntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~--~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 331 DGSRSTIVFAS------SHNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLN--QTNCKIIFVSSTNTG 392 (738)
T ss_pred CCCccEEEEEe------ccCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHh--ccCccEEEEecCCCC
Confidence 01 2344442 11122334567899999999988764333322 2222 237889999988653
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.39 Score=56.69 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=27.2
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAV 104 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAq 104 (2355)
+.+++|.+++|+|||..+. +++..+... .+..++|+. ...++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~--~g~~v~y~~-~~~l~~ 159 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK--KGVPVLYFP-FVEGFG 159 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh--cCceEEEEE-HHHHHH
Confidence 4679999999999996654 555555521 145566654 444433
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.33 Score=56.96 Aligned_cols=50 Identities=12% Similarity=0.315 Sum_probs=33.7
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
++.++++.+++|.|||..++..+. .+.. .+.-++++++..|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~-~l~~----~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN-ELLK----AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH-HHHH----cCCeEEEEEHHHHHHHHHHHHh
Confidence 577899999999999988774444 4442 2334555777778655554443
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.13 Score=67.37 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.|++-|.+++.. ....++|.|..|+|||.+.+.-+...+........++|+|+.|+..+.++.+.+..+....
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~----- 74 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK----- 74 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc-----
Confidence 488999999875 3467899999999999886665555444323445679999999999999999888764210
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHH-HHhhcccC-cCceEEEecccch
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQM-IKLKYLNM-DSVRLFIMDEADK 172 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDL-Ldrr~LdL-SkIdLLIVDEAHR 172 (2355)
....|.|+|...|... +......+ ..-.+-|+|+...
T Consensus 75 -------------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 75 -------------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred -------------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 0124778998876533 32211100 1123557777654
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.55 Score=55.25 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=27.8
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~ 106 (2355)
.+++|.+++|+|||..+. ++...+.. .+..+ ++++...|..++
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~---~g~~v-~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLA---KGRSV-IVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH---cCCCe-EEEEHHHHHHHH
Confidence 579999999999996655 55555552 23444 445555664443
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.085 Score=67.82 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=78.2
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHH-HHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQIT-DVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~a-nwLREFgk~APg 119 (2355)
..+|||.+.++.+... +.++|..+.-+|||.+.+..+. +... ....++|+|.|+..++..+. ..|..+....|.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g-~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~ 92 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIG-YSID--QDPGPMLYVQPTDDAAKDFSKERLDPMIRASPV 92 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhce-EEEE--eCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHH
Confidence 6799999999988764 4699999999999986554433 3332 34577999999999998766 667777777766
Q ss_pred cEEEEEE------CCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 120 LHVDYFI------GGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 120 LrVVvyt------GGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
++-.+.. ++...........|.++....- ..+....+++||+||++.+.
T Consensus 93 l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 93 LRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHhCchhhcccCCchhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 5532222 0111111111122333321111 12245667899999999884
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.53 Score=62.82 Aligned_cols=40 Identities=18% Similarity=0.463 Sum_probs=26.6
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
..+++|||||+|+|....+ ..+.++++.-+....+|++|.
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEEC
Confidence 4678999999999875433 445556666555555555553
|
|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.3 Score=56.53 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=24.9
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
-++.+||++|||.-.+-.+..+.. .+.+++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~----ag~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY----SEKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH----cCCceEEEEecc
Confidence 578999999999544433333322 467789998864
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.17 Score=66.56 Aligned_cols=117 Identities=18% Similarity=0.128 Sum_probs=75.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
....+....-..|++-|.+++-. ...+++|.|..|+|||.+.+.-+...+.........+|+|+.++..+..+.+.+.
T Consensus 185 ~~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~ 262 (684)
T PRK11054 185 YADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIR 262 (684)
T ss_pred HHHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHH
Confidence 34444444445799999999863 3456889999999999776655444443333345689999999999988888887
Q ss_pred HHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHH-HHHhhcccCcCceEEEecccc
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQ-MIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLD-LLdrr~LdLSkIdLLIVDEAH 171 (2355)
+... ...|.|.|...|.. ++....-....+..+++|+..
T Consensus 263 ~~lg---------------------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 263 ERLG---------------------TEDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred HhcC---------------------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 6531 02478899887753 333221122233344556543
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.78 Score=55.48 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=22.8
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
.+++|.||+|+|||.+ +-.++..+... .....+++|
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~~~-~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELEEI-AVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHh-cCCcEEEEE
Confidence 4699999999999955 44555555421 123445555
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.9 Score=45.67 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.1
Q ss_pred EEEEccCCchHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 61 VILAAPTGSGKTLVAL 76 (2355)
++|.+|.|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999995443
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.47 Score=58.31 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=24.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.++|.|++|+|||.... ++...+.+. ..+..++++..
T Consensus 138 ~l~l~G~~G~GKThL~~-ai~~~l~~~-~~~~~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLH-AIGNEILEN-NPNAKVVYVSS 174 (405)
T ss_pred eEEEECCCCCcHHHHHH-HHHHHHHHh-CCCCcEEEEEH
Confidence 47899999999996654 555555532 23456777643
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.35 Score=55.73 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=28.0
Q ss_pred CceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 161 SVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
.+++||||++|.+... .+...+..++..+......+++|++..+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4578999999987543 3345566777665544445566666443
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.42 Score=69.25 Aligned_cols=62 Identities=26% Similarity=0.254 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHH---HHHHHHHHhcCCCCCeEEEEcccHHHHHHH
Q psy8497 42 VKESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFV---VAALNKLIKLPVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVAL---IAILerL~ekr~qggRVLILVPTRALAqQ~ 106 (2355)
..|++.|.+++..++... -++|.+..|+|||.+.. -++...+. ..+..++.++||-..+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~---~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE---SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH---hcCCeEEEEeChHHHHHHH
Confidence 479999999999988754 47889999999995541 22333322 3467799999998775544
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.72 Score=58.27 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=67.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++++|+|||.++.-.+ .++.. .+.++++|.. .+ +...|+..+...+. +.+ ++....
T Consensus 98 I~lvG~~GsGKTTtaakLA-~~L~~---~g~kV~lV~~D~~R~aa~eQL~~la~~~g-----vp~---~~~~~~------ 159 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLA-RYFKK---KGLKVGLVAADTYRPAAYDQLKQLAEKIG-----VPF---YGDPDN------ 159 (437)
T ss_pred EEEECCCCCcHHHHHHHHH-HHHHH---cCCeEEEecCCCCCHHHHHHHHHHHHHcC-----CcE---EecCCc------
Confidence 7889999999997655443 44442 3456666553 22 33344444444431 111 111000
Q ss_pred CcEEEECH-HHHHHHHHhhcccCcCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 138 VQIVVGSP-GRIKQMIKLKYLNMDSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTP-ErLLDLLdrr~LdLSkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..| +.+...+.. ....++||||.+=++.. ......+..+.....+..-++.+.|+...+....+..+
T Consensus 160 -----~d~~~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 160 -----KDAVEIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred -----cCHHHHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 011 112233322 12237999999965542 22344555666666666777888998876666555543
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.37 Score=55.15 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=29.1
Q ss_pred cCceEEEecccchhccc-ChHHHHHHHHHhCCC-CceEEEEEeccChhH
Q psy8497 160 DSVRLFIMDEADKLINT-GFVEDITWIYSQLPP-MKQMLVVSATYSHDN 206 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~-GF~SrLeeILs~Lpp-nrQILLLSATLS~EI 206 (2355)
...++|||||+|.+... .+...+..++..+.. ..++|++|++..+..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 45679999999987532 233345555555433 346677777765443
|
|
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.45 Score=61.25 Aligned_cols=147 Identities=15% Similarity=0.074 Sum_probs=89.0
Q ss_pred CCcHHHHHHHHHHHc------C----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLN------G----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 43 eLRPYQeEALn~LLS------G----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
.|-|||.-++-.|+. + +-++|..|-+-|||..+...++..+.-....+..+.|++|+...+.+.++.++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 789999999999983 1 137899999999996554333333332335677899999999999999999988
Q ss_pred HhcccCCcEEEEEECCccccCCCCCCc--EEEECHHHHHHHHH--hhcccCcCceEEEecccchhcccChHHHHHHHHHh
Q psy8497 113 VGAHVKNLHVDYFIGGTQVERPKRPVQ--IVVGSPGRIKQMIK--LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ 188 (2355)
Q Consensus 113 Fgk~APgLrVVvytGGkq~rkqirq~D--ILVTTPErLLDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~ 188 (2355)
.....+++...+ ..+... |...--...+..+. ....+-.+..+.||||.|.....+ ..+..+...
T Consensus 141 mv~~~~~l~~~~---------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~g 209 (546)
T COG4626 141 MVKRDDDLRDLC---------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKGG 209 (546)
T ss_pred HHHhCcchhhhh---------ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHhh
Confidence 766554222111 111111 11111111111111 133345566799999999877652 344444444
Q ss_pred C--CCCceEEEEEe
Q psy8497 189 L--PPMKQMLVVSA 200 (2355)
Q Consensus 189 L--ppnrQILLLSA 200 (2355)
+ .+..++++.|.
T Consensus 210 ~~ar~~~l~~~ITT 223 (546)
T COG4626 210 LGARPEGLVVYITT 223 (546)
T ss_pred hccCcCceEEEEec
Confidence 3 34567777766
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.46 Score=55.16 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.0
Q ss_pred CcEEEEccCCchHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVA 78 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIA 78 (2355)
.++||.+|+|+|||.++-+.
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 35899999999999766533
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.65 Score=54.54 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=25.3
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
....+|||||+|.+... ....+..++...+...++|+++.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999987543 23445556665555566665443
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.72 E-value=1 Score=54.81 Aligned_cols=143 Identities=16% Similarity=0.221 Sum_probs=74.4
Q ss_pred CCCcHHHHHHHHHHHc----CC---cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 42 VKESPIQMAAFPYVLN----GY---DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----GR---NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..++|||..++..+.+ ++ -.++.+|.|.||+..+.. +...|.-....... .|+. ..++. .
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC~~~~~~~---~c~~-------c~~~~--~ 69 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLASGPDPAA---AQRT-------RQLIA--A 69 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhCCCCCCCC---cchH-------HHHHh--c
Confidence 4688999999988764 22 388999999999976654 44444321101100 1221 11221 2
Q ss_pred cccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcc--cCcCceEEEecccchhcccChHHHHHHHHHhCCCC
Q psy8497 115 AHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYL--NMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~L--dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn 192 (2355)
...|++.++....+..... ....|. .+.+..+...-.+ ......++|||+|+.|... -...+.++++.=+..
T Consensus 70 g~HPD~~~i~~~p~~~~~k--~~~~I~---idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~ 143 (319)
T PRK08769 70 GTHPDLQLVSFIPNRTGDK--LRTEIV---IEQVREISQKLALTPQYGIAQVVIVDPADAINRA-ACNALLKTLEEPSPG 143 (319)
T ss_pred CCCCCEEEEecCCCccccc--cccccc---HHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHH-HHHHHHHHhhCCCCC
Confidence 3446666553111111000 001222 3334433322111 1346789999999998543 345566666665555
Q ss_pred ceEEEEEeccC
Q psy8497 193 KQMLVVSATYS 203 (2355)
Q Consensus 193 rQILLLSATLS 203 (2355)
..+|++|..+.
T Consensus 144 ~~fiL~~~~~~ 154 (319)
T PRK08769 144 RYLWLISAQPA 154 (319)
T ss_pred CeEEEEECChh
Confidence 66666655433
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=92.71 E-value=1 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=18.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
.+++|.+|+|+|||.+ +-.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 4699999999999955 445555554
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.4 Score=62.30 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.|++-|.+++.. ...+++|.|..|+|||.+.+.-+...+.+.......+|+|+.|+..+.++.+.+.+.....
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~----- 73 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG----- 73 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----
Confidence 378999998874 3567999999999999776666655554323345679999999999999998888764210
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHHhhccc--CcCceEEEecccch
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLN--MDSVRLFIMDEADK 172 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLdrr~Ld--LSkIdLLIVDEAHR 172 (2355)
....|.|.|...|...+.+.... -..-.+-|+|+...
T Consensus 74 -------------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 74 -------------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred -------------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 11358899998876444332111 01122457787764
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.9 Score=49.80 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=29.5
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
..+.++||||+|.|... ....+.++++.-+....+|++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 56889999999987643 34666777777666666666665544
|
... |
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.69 Score=59.29 Aligned_cols=39 Identities=13% Similarity=0.376 Sum_probs=27.3
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.++||||+|+|....+ ..+.++++..+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998875433 44556666666666666655
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.62 Score=58.78 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=57.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
..++|.|++|+|||... .++...+.. ...+.+++||.+ ..+..++...+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~-~~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------------ 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIES-NFSDLKVSYMSG-DEFARKAVDILQKTH------------------------ 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHH-hCCCCeEEEEEH-HHHHHHHHHHHHHhh------------------------
Confidence 34899999999999554 455555542 223556776655 455444333332100
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCC-CCceEEEEEeccC
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLP-PMKQMLVVSATYS 203 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lp-pnrQILLLSATLS 203 (2355)
+.+..+.. .+..+++|||||+|.+.... ....+..++..+. ...|+|+.|-.++
T Consensus 195 -------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 195 -------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred -------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 11111111 13467799999999876432 2344555555543 3345555444443
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.43 E-value=2.1 Score=51.22 Aligned_cols=127 Identities=14% Similarity=0.233 Sum_probs=70.9
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--c-HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--T-REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--T-RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
..+++.+++|+|||..+.+.+. .+.. .+..+.++.- . ...+.||..+...+ +
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~-~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~-----~---------------- 130 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW-QFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTI-----G---------------- 130 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH-HHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhc-----C----------------
Confidence 4588999999999976554433 3331 2445555553 2 24555555444332 1
Q ss_pred CCCcEEE-ECHHHHHHHHHhhcccCcCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChh-HHHHHHH
Q psy8497 136 RPVQIVV-GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHD-NLATLQK 212 (2355)
Q Consensus 136 rq~DILV-TTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~E-ILElLkK 212 (2355)
+.++. .+++.|...+..- -....+++||||-+=+... ......+..++....+..-++.++||.... ....+..
T Consensus 131 --~~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~ 207 (270)
T PRK06731 131 --FEVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 207 (270)
T ss_pred --ceEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHH
Confidence 12222 3555565544321 1124678999999977542 223444555555555555577799987654 4455554
Q ss_pred h
Q psy8497 213 Y 213 (2355)
Q Consensus 213 f 213 (2355)
|
T Consensus 208 f 208 (270)
T PRK06731 208 F 208 (270)
T ss_pred h
Confidence 4
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.75 Score=52.96 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=22.6
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
..++|.+++|+|||.... ++...+.+ .+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~---~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQ---AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH---cCCcEEEEe
Confidence 349999999999996544 44444442 244566653
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.76 Score=60.63 Aligned_cols=42 Identities=14% Similarity=0.374 Sum_probs=27.1
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
...+.++||||+|+|....+ +.+.++++.-+....+|+.|.-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCC
Confidence 35688999999999865433 3445555554555666665543
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.2 Score=52.53 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=25.9
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
..++|||||+|.+........+..++...+...++|+.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4568999999988333234555666666666666666443
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.5 Score=50.36 Aligned_cols=61 Identities=25% Similarity=0.256 Sum_probs=41.0
Q ss_pred HHHHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 49 MAAFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 49 eEALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
...|..++. +..++|.+++|+|||+.++..+...+. .+.++|||+-. +-..|+.+.+..++
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~----~ge~~lyvs~e-e~~~~i~~~~~~~g 72 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MGEPGIYVALE-EHPVQVRRNMAQFG 72 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH----cCCcEEEEEee-CCHHHHHHHHHHhC
Confidence 345666664 345899999999999776655555544 36678888843 44456666666654
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.68 Score=58.44 Aligned_cols=105 Identities=17% Similarity=0.308 Sum_probs=56.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
+.++|.||.|+|||.... ++...+.. .+.+++|+.. ..+..+....+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~---~~~~v~yi~~-~~f~~~~~~~l~~-------------------------- 190 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE---SGGKILYVRS-ELFTEHLVSAIRS-------------------------- 190 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH---cCCCEEEeeH-HHHHHHHHHHHhc--------------------------
Confidence 348999999999996544 55555543 2566777654 3443322222110
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhC-CCCceEEEEEeccChh
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQL-PPMKQMLVVSATYSHD 205 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~L-ppnrQILLLSATLS~E 205 (2355)
...+.+... ...+++|||||+|.+.... ....+..++..+ ....++|+.|.+++..
T Consensus 191 ----~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 191 ----GEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQD 248 (445)
T ss_pred ----chHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHH
Confidence 001112111 2467899999999886432 233444444433 2345666555454433
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.3 Score=58.99 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=26.6
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.+|||||+|.|.... ...+.+++...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999876432 344556666555566666655
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.43 Score=58.07 Aligned_cols=46 Identities=11% Similarity=0.291 Sum_probs=31.9
Q ss_pred ccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 157 LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 157 LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
.....+.+||+||||.|...- ...+.++++......++++++.-+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 345667899999999887543 3555666666666777787776543
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.6 Score=56.16 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=25.5
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.++||||+|.|....+ ..+.+.++.-++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 35788999999998865432 44455555555555555544
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.3 Score=55.75 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=25.1
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..++|.||+|+|||..+. ++...+.+ ...+..++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~-~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQ-NEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHH-hCCCCeEEEEEH
Confidence 358999999999996654 55555543 123456777654
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.94 Score=57.99 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.6
Q ss_pred EEEEccCCchHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAI 79 (2355)
+|+.||.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999997766443
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.94 E-value=2 Score=57.47 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=87.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 33 RQGLQENGFVKESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 33 LK~Lqa~GF~eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
-..|.....+....-|.+.+..++... -++|.|.-|=|||.+.-+++. .+.+. .....++|.+|+.+-++.+...+
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~-~~~~~iiVTAP~~~nv~~Lf~fa 281 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARL-AGSVRIIVTAPTPANVQTLFEFA 281 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHh-cCCceEEEeCCCHHHHHHHHHHH
Confidence 334555555666666666777777654 488899999999976665553 22221 11458999999998887777666
Q ss_pred HHHhcccCCcEEE-EEEC-CccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHh
Q psy8497 111 RSVGAHVKNLHVD-YFIG-GTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ 188 (2355)
Q Consensus 111 REFgk~APgLrVV-vytG-Gkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~ 188 (2355)
.+-+... +.... .... +.........+.|-+-+|.... ..-++||||||=.+. ...+..++..
T Consensus 282 ~~~l~~l-g~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~~ 346 (758)
T COG1444 282 GKGLEFL-GYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLRR 346 (758)
T ss_pred HHhHHHh-CCccccccccccceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHhh
Confidence 5543333 22211 1111 1111111122446677776551 115699999998653 3555555554
Q ss_pred CCCCceEEEEEeccC
Q psy8497 189 LPPMKQMLVVSATYS 203 (2355)
Q Consensus 189 LppnrQILLLSATLS 203 (2355)
. +.++||.|..
T Consensus 347 ~----~rv~~sTTIh 357 (758)
T COG1444 347 F----PRVLFSTTIH 357 (758)
T ss_pred c----CceEEEeeec
Confidence 4 3577788765
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.4 Score=50.87 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=22.4
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
..++|.+|+|+|||.... ++...+.. .+..++|+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~-a~~~~~~~---~~~~v~y~~ 80 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH-AACAELSQ---RGRAVGYVP 80 (235)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh---CCCeEEEEE
Confidence 468999999999996554 33333332 244555553
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.5 Score=56.47 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.4
Q ss_pred cEEEEccCCchHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAI 79 (2355)
.+|+.+|.|+|||.++-+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999997766444
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.3 Score=54.93 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.5
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.+||.+|.|+|||.++.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999996554
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.55 Score=63.52 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=24.7
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
..+.+|||||+|+|.... ...+.++++.-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 567899999999986432 34455555554555555554
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.3 Score=57.37 Aligned_cols=121 Identities=14% Similarity=0.250 Sum_probs=58.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
+..++|++|+|+|||......+...... ..+.++.+|. +.+..+ .+++..+.... ++.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~--~~gkkVaLIdtDtyRigA---~EQLk~ya~iL-gv~v~------------ 411 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ--HAPRDVALVTTDTQRVGG---REQLHSYGRQL-GIAVH------------ 411 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCceEEEecccccccH---HHHHHHhhccc-CceeE------------
Confidence 4558889999999997654333322221 1233455544 223222 12222222111 11110
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCceEEEEEeccChhH
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDN 206 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~LppnrQILLLSATLS~EI 206 (2355)
.+.+...|...+.. +..+++||||.+=+..... ....+..+.. ......+|+++++.....
T Consensus 412 -----~a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 412 -----EADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSD 473 (559)
T ss_pred -----ecCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhH
Confidence 11233445544432 3467899999997653221 1122322222 223456788888876433
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.1 Score=54.40 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh-ccc
Q psy8497 44 ESPIQMAAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG-AHV 117 (2355)
Q Consensus 44 LRPYQeEALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg-k~A 117 (2355)
++|||...+..+... +..|+.+|.|.|||..+...+-..+...........=.|+ .++.+. ...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~----------~C~~~~~~~H 71 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECM----------SCHLFGQGSH 71 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCH----------HHHHHhcCCC
Confidence 478888888887743 2378999999999976664443333221111110111122 222221 334
Q ss_pred CCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcc--cCcCceEEEecccchhcccChHHHHHHHHHhCCCCceE
Q psy8497 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYL--NMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~L--dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQI 195 (2355)
|++..+.-.+..... ......| ..+.+.++...-.+ ....+.++|+|++|.|-.. ....+.++++..+....+
T Consensus 72 pD~~~~~p~~~~~~~-g~~~~~I---~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~ 146 (325)
T PRK08699 72 PDFYEITPLSDEPEN-GRKLLQI---KIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVF 146 (325)
T ss_pred CCEEEEecccccccc-cccCCCc---CHHHHHHHHHHHhhCcccCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEE
Confidence 454443222210000 0000112 23444443332111 2356789999999987543 446666677766555555
Q ss_pred EEEEec
Q psy8497 196 LVVSAT 201 (2355)
Q Consensus 196 LLLSAT 201 (2355)
|++|..
T Consensus 147 Ilvth~ 152 (325)
T PRK08699 147 LLVSHA 152 (325)
T ss_pred EEEeCC
Confidence 554443
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.99 Score=55.48 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=27.6
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
...+.+|||||+|.|.... ...+.++++.-+....+|++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 3578899999999885433 34566666665555555666543
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.1 Score=54.83 Aligned_cols=142 Identities=11% Similarity=0.160 Sum_probs=73.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH-HHHHHHHHHHHHhcccCCcEEEEEECCc--cccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGT--QVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA-LAqQ~anwLREFgk~APgLrVVvytGGk--q~rkqirq 137 (2355)
.|+.+..|+|||.+..+.++..+... ..+..+||+-|+.. |..-+...+....... ++....-.... ........
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCCC
Confidence 68899999999998887777776642 14577888888876 5444555555433322 22211111111 11100001
Q ss_pred CcEEEECH-HHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC--CCceEEEEEeccChhHHHHHHHh
Q psy8497 138 VQIVVGSP-GRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP--PMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTP-ErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp--pnrQILLLSATLS~EILElLkKf 213 (2355)
..|++..- +....+ .....+.+++||||..+... .+..++..+. .....+++|.+|.....-....+
T Consensus 82 ~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w~~~~f 151 (396)
T TIGR01547 82 KKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHWVKKRF 151 (396)
T ss_pred eEEEeecccCChhHh-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccHHHHHH
Confidence 22444332 111111 12233689999999987533 3333333332 22224788888875433333333
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.5 Score=58.01 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=25.7
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.++||||+|+|.... ...+.++++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 467899999999886543 344555666655555555544
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.87 Score=60.04 Aligned_cols=38 Identities=16% Similarity=0.375 Sum_probs=24.8
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
..+.++||||+|+|....+ ..+.++++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 5688999999998875433 4455556554444555554
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.8 Score=57.42 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
.++|+.+|.|+|||.++-+.+- ..+..|.-+..+..=+.++.+.+++
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~-------~~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG-------TTNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHH-------hhCCceEEeccccccHHHHHHHHHH
Confidence 3699999999999976654332 1234466666655554444444443
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.3 Score=50.99 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=24.1
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.+|||||+|.|.... ...+..+++..+....+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 357899999999986432 344455555544445555433
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.3 Score=54.14 Aligned_cols=39 Identities=13% Similarity=0.370 Sum_probs=24.2
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
....++||||+|.|....+ ..+...+...+....+|++|
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4577999999998864332 33444455444455555544
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=90.97 E-value=2.2 Score=46.93 Aligned_cols=115 Identities=12% Similarity=0.228 Sum_probs=54.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
..|+.+|.|.|||..+. .+...+.............|+.-.. +. ....|++.+....+..
T Consensus 16 ~~L~~G~~G~gkt~~a~-~~~~~l~~~~~~~~~~c~~~~~c~~-------~~--~~~~~d~~~~~~~~~~---------- 75 (188)
T TIGR00678 16 AYLFAGPEGVGKELLAL-ALAKALLCEQPGGGEPCGECPSCRL-------IE--AGNHPDLHRLEPEGQS---------- 75 (188)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCCHHHHH-------HH--cCCCCcEEEeccccCc----------
Confidence 48899999999996554 4444444211111112233333211 11 1122333332221110
Q ss_pred EEEECHHHHHHHHHhhc--ccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 140 IVVGSPGRIKQMIKLKY--LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 140 ILVTTPErLLDLLdrr~--LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
.+.+.+..++..-. -......+|||||+|.|.... ...+...++..+...-+|++
T Consensus 76 ---~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 76 ---IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred ---CCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 23355543333211 123567899999999986432 23444555544434444444
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.1 Score=51.75 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=49.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
.++.+||.+|||.-.+..+. ... ..+.++++..|...- .+ +...+.- +.-....-+
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~-~~~---~~g~~v~vfkp~iD~---------R~-----~~~~V~S------r~G~~~~A~ 62 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRAR-RYK---EAGMKVLVFKPAIDT---------RY-----GVGKVSS------RIGLSSEAV 62 (201)
T ss_pred EEEEccCcCcchHHHHHHHH-HHH---HcCCeEEEEeccccc---------cc-----ccceeee------ccCCcccce
Confidence 57899999999964333332 222 357778888885322 01 1111111 111112335
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
+|-....+.+.+...... ..+++|+||||+-+.
T Consensus 63 ~i~~~~~i~~~i~~~~~~-~~~~~v~IDEaQF~~ 95 (201)
T COG1435 63 VIPSDTDIFDEIAALHEK-PPVDCVLIDEAQFFD 95 (201)
T ss_pred ecCChHHHHHHHHhcccC-CCcCEEEEehhHhCC
Confidence 566666666666543221 227899999999654
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.52 Score=65.82 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=78.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
++++-|.++|. ..+.+++|.|.-|+|||.+.+--++..+... ....++|+|+=|...+.++.+.+.+.....-.-..
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p 77 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEEALQKALQQEP 77 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCc
Confidence 36889999997 4678899999999999988777777666532 33356999999999998888888875432100000
Q ss_pred EEEECCcccc-CCCCCCcEEEECHHHHHHHHHhhcccCcC--ceEEEecccch
Q psy8497 123 DYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKLKYLNMDS--VRLFIMDEADK 172 (2355)
Q Consensus 123 VvytGGkq~r-kqirq~DILVTTPErLLDLLdrr~LdLSk--IdLLIVDEAHR 172 (2355)
...... ........-|+|...+...+-+....... ..+=|.||...
T Consensus 78 ----~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 78 ----NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ----hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 000000 01111456789998876544443322222 24567898875
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.73 E-value=1 Score=58.64 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=58.3
Q ss_pred HHHHHHHCCCCCCcH----HHHHHHHHHHcCCc--EEEEccCCchHHHHHHHHHHHHHHh--cCCCCCeEEEEcccHHHH
Q psy8497 32 IRQGLQENGFVKESP----IQMAAFPYVLNGYD--AIVQSKSGTGKSIVFVVAALNKLIK--LPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRP----YQeEALn~LLSGRN--VILAAPTGSGKTLVALIAILerL~e--kr~qggRVLILVPTRALA 103 (2355)
|+..|...-=..++. +|.+-=+.|...++ +||++..|+|||.+++--+.-.|.. ..-.++++|||.|++.+.
T Consensus 194 L~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFl 273 (747)
T COG3973 194 LQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFL 273 (747)
T ss_pred HHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHH
Confidence 777777765555544 46665555555444 8999999999998887665544543 233566799999999997
Q ss_pred HHHHHHHHHHh
Q psy8497 104 VQITDVVRSVG 114 (2355)
Q Consensus 104 qQ~anwLREFg 114 (2355)
.-+.+.+=+++
T Consensus 274 eYis~VLPeLG 284 (747)
T COG3973 274 EYISRVLPELG 284 (747)
T ss_pred HHHHHhchhhc
Confidence 77776666664
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.4 Score=50.58 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=80.9
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCC
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqir 136 (2355)
....++|..++|-|||.+++..++..+. .+.+|+||-=.+--.. ......+ ...+.+.+..+-.+..... .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g----~G~~V~ivQFlKg~~~--~GE~~~l-~~l~~v~~~~~g~~~~~~~--~ 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG----HGKKVGVVQFIKGAWS--TGERNLL-EFGGGVEFHVMGTGFTWET--Q 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH----CCCeEEEEEEecCCCc--cCHHHHH-hcCCCcEEEECCCCCcccC--C
Confidence 4457999999999999888877777665 4778888875443210 1111111 1122333322111111111 1
Q ss_pred CCcEEEECHHHHHHHHH--hhcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 137 PVQIVVGSPGRIKQMIK--LKYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 137 q~DILVTTPErLLDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
.... ........+. ...+....+++||+||+=..++.++ ...+..++...|...-+|++.-.++.++.+...
T Consensus 92 ~~~e---~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 92 DRER---DIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CcHH---HHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 0000 0011111121 1333457889999999998887775 566777777777777777777677766555443
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.2 Score=58.12 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=27.0
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.++||||+|+|.... ...+..+++..+....+|+++
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3577899999999987543 344556666555555566555
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.5 Score=62.33 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=73.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
..|++-|.+++.. ...+++|.|..|+|||.+.+.-+...+.+......++|+|+-|+..+..+.+.+.++...
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~----- 75 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP----- 75 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc-----
Confidence 4689999999974 346799999999999987666555444432234467999999999998888888876421
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhccc-C-cCceEEEecccch
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLN-M-DSVRLFIMDEADK 172 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~Ld-L-SkIdLLIVDEAHR 172 (2355)
....|.|+|...|...+.+.... + ..-.+-|+|+...
T Consensus 76 --------------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 --------------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred --------------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 01347789988765433322111 0 1123457777653
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=2.4 Score=53.41 Aligned_cols=121 Identities=16% Similarity=0.216 Sum_probs=65.4
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
+-++|++|+|+|||....-.+. .+.. .+.++.+|. |.+. -+.||..+...+. +.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~-~l~~---~g~~V~lItaDtyR~gAveQLk~yae~lg-----vp-------------- 263 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGW-QLLK---QNRTVGFITTDTFRSGAVEQFQGYADKLD-----VE-------------- 263 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH---cCCeEEEEeCCccCccHHHHHHHHhhcCC-----CC--------------
Confidence 3478999999999966554443 3332 245566555 3332 3345544443321 11
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhH
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDN 206 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EI 206 (2355)
-+++.+|+.|...+..-. ....+++||||=+=+.... .....+..+.....+..-++.++|+.....
T Consensus 264 ---v~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d 331 (407)
T PRK12726 264 ---LIVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSAD 331 (407)
T ss_pred ---EEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHH
Confidence 122356776765554221 1245789999998765422 233444555555544444566777665433
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=90.53 E-value=1.3 Score=49.97 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=23.9
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCce-EEEEEeccC
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ-MLVVSATYS 203 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQ-ILLLSATLS 203 (2355)
..++|||||+|.+... ....+..++..+..... +++++++..
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4568999999987533 23344444544332333 466666643
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=4 Score=51.97 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=63.5
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHHHHH-HHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREIAVQ-ITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRALAqQ-~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
++|++|+|+|||.+..-.+..... ..+.+++++. +.+..+.+ ...+...+ ++.+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~---~~G~~V~Lit~Dt~R~aA~eQLk~yAe~l-----gvp~--------------- 282 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFL---HMGKSVSLYTTDNYRIAAIEQLKRYADTM-----GMPF--------------- 282 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---hcCCeEEEecccchhhhHHHHHHHHHHhc-----CCCe---------------
Confidence 678999999999776655544323 1244555554 33444332 22222222 1111
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc-ccChHHHHHHHHHhC---CCCceEEEEEeccChhHHHHHHH
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI-NTGFVEDITWIYSQL---PPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk-N~GF~SrLeeILs~L---ppnrQILLLSATLS~EILElLkK 212 (2355)
+.+.....+...+. ...+++||||=+-+.. +......+..++... .+...+|.|+||........+..
T Consensus 283 --~~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 283 --YPVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred --eehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 11111222333332 2467899999766542 222334445555443 23356788999998865554443
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.9 Score=57.99 Aligned_cols=125 Identities=17% Similarity=0.236 Sum_probs=68.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc--H-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT--R-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT--R-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++|+|+|||.+....+...... ....++.+|.-- + ..+.|+..+.+.+. +.
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~Dt~RigA~eQL~~~a~~~g-----vp---------------- 244 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAR--EGADQLALLTTDSFRIGALEQLRIYGRILG-----VP---------------- 244 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecCcccchHHHHHHHHHHHhCC-----CC----------------
Confidence 6789999999996654443322221 112345554432 2 23344444333321 11
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCceEEEEEeccChhHHH-HHHHh
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDNLA-TLQKY 213 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~LppnrQILLLSATLS~EILE-lLkKf 213 (2355)
-.++.+|+.+.+.+.. +...++||||=+=+..... ....+..+.....+...+|.++||.....+. .+..|
T Consensus 245 -v~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 245 -VHAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred -ccccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 1223477777666642 3466899999988765332 2333444444455666788899998766554 33443
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.7 Score=49.96 Aligned_cols=106 Identities=22% Similarity=0.325 Sum_probs=59.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
.++|.+|+|+|||-. +.++...+.+. .++.+|+|+... .........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-~~~~~v~y~~~~-~f~~~~~~~~~~--------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-HPGKRVVYLSAE-EFIREFADALRD--------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-CTTS-EEEEEHH-HHHHHHHHHHHT---------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-cccccceeecHH-HHHHHHHHHHHc---------------------------
Confidence 389999999999964 44555555431 235567766543 443333333322
Q ss_pred EEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhC-CCCceEEEEEeccChh
Q psy8497 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQL-PPMKQMLVVSATYSHD 205 (2355)
Q Consensus 140 ILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~L-ppnrQILLLSATLS~E 205 (2355)
...+.+.+. +..+++||||.+|.+.... ....+..++..+ ....++|+.|..++..
T Consensus 86 ---~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 ---GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ---TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ---ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 011122211 3467899999999987543 344555555554 3356777777665543
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.38 E-value=4.1 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=19.4
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHh
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIK 85 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~e 85 (2355)
.+++|.++||+|||.+ +-.++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 4699999999999955 4455666654
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.97 Score=53.74 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.6
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.++++.+|+|+|||.++.
T Consensus 59 ~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 469999999999997764
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=2.5 Score=52.50 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=23.4
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
.....+|||||+|.|..... ..+...++..++...+|+++
T Consensus 125 ~~~~kvvIIdea~~l~~~~~-~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAF-NAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 46778999999999864322 33444444443334444433
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.22 E-value=3.5 Score=48.06 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=25.5
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
..+.+||||||+.|... -...+..++..-+....+|+++-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 67889999999988642 23445555555454555555443
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.19 E-value=1.5 Score=57.33 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=27.1
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.+|||||+|.|.... ...+.+.++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999986433 345555566656666666655
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.17 Score=57.06 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=48.3
Q ss_pred EEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE-EECCccccCCCCCCcE
Q psy8497 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY-FIGGTQVERPKRPVQI 140 (2355)
Q Consensus 62 ILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv-ytGGkq~rkqirq~DI 140 (2355)
||.|+-|-|||.+.- .++..+.. ....+++|.+|+..-++.+.+.+..-.... +.+... ...............|
T Consensus 1 VltA~RGRGKSa~lG-l~~a~l~~--~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~i 76 (177)
T PF05127_consen 1 VLTADRGRGKSAALG-LAAAALIQ--KGKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEKKKRIGQIIKLRFNKQRI 76 (177)
T ss_dssp -EEE-TTSSHHHHHH-HCCCCSSS-------EEEE-SS--S-HHHHHCC---------------------------CCC-
T ss_pred CccCCCCCCHHHHHH-HHHHHHHH--hcCceEEEecCCHHHHHHHHHHHHhhcccc-ccccccccccccccccccccceE
Confidence 688999999994433 33333331 122579999999988766666655433222 111100 0000000001113457
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
-+..|+.+... ....++||||||=.+. ...+..++. ... .++||.|..
T Consensus 77 ~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~---~~~-~vv~stTi~ 124 (177)
T PF05127_consen 77 EFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLR---RFP-RVVFSTTIH 124 (177)
T ss_dssp -B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC---CSS-EEEEEEEBS
T ss_pred EEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHh---hCC-EEEEEeecc
Confidence 77777766221 2245899999998654 233444432 233 455566654
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=1.1 Score=58.74 Aligned_cols=104 Identities=14% Similarity=0.225 Sum_probs=57.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
.++|.+++|+|||.... ++...+.. ...+.+++||.- ..++.++...+..
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~-~~~g~~V~Yita-eef~~el~~al~~--------------------------- 365 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARR-LYPGTRVRYVSS-EEFTNEFINSIRD--------------------------- 365 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHH-hCCCCeEEEeeH-HHHHHHHHHHHHh---------------------------
Confidence 48999999999996544 44444442 123456666543 4454333322211
Q ss_pred EEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCC-CceEEEEEeccC
Q psy8497 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPP-MKQMLVVSATYS 203 (2355)
Q Consensus 140 ILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lpp-nrQILLLSATLS 203 (2355)
...+.+... +..+++||||++|.+.... ....+..++..+.. ..+||+.|-..+
T Consensus 366 ---~~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P 421 (617)
T PRK14086 366 ---GKGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPP 421 (617)
T ss_pred ---ccHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCCh
Confidence 011112111 3457899999999886543 23445555555433 456666554444
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.54 Score=51.19 Aligned_cols=56 Identities=16% Similarity=0.266 Sum_probs=28.1
Q ss_pred ECHHHHHHHHHhhcccCcCceEEEecccchhc-c----cChHHHHHHHHHhCCC-CceEEEEEecc
Q psy8497 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI-N----TGFVEDITWIYSQLPP-MKQMLVVSATY 202 (2355)
Q Consensus 143 TTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk-N----~GF~SrLeeILs~Lpp-nrQILLLSATL 202 (2355)
.+...+...+...... -+|||||+|.+. . ..+...+..++..+.. ....++++++.
T Consensus 104 ~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 3444455555433222 489999999988 2 2244555555555322 23334455554
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.94 Score=51.06 Aligned_cols=140 Identities=10% Similarity=0.078 Sum_probs=71.6
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC----CcE
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK----NLH 121 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP----gLr 121 (2355)
.|..++. +.-++|.+++|+|||+.++..+...+.. .+.++|||+-. +-..++.+.+..++.... .-.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~---~ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~ 82 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKN---FGEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGK 82 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HT--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTS
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhh---cCCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCC
Confidence 3455563 3458999999999997766656555552 15678888843 223455666665532110 001
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc----cChHHHHHHHHHhCCCCceEEE
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN----TGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN----~GF~SrLeeILs~LppnrQILL 197 (2355)
+..+.......... -..++.+...+.... .-...+.||||-.-.+.. ..+...+..+...+.....+++
T Consensus 83 l~~~d~~~~~~~~~------~~~~~~l~~~i~~~i-~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~l 155 (226)
T PF06745_consen 83 LKIIDAFPERIGWS------PNDLEELLSKIREAI-EELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTL 155 (226)
T ss_dssp EEEEESSGGGST-T------SCCHHHHHHHHHHHH-HHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEEeccccccccc------ccCHHHHHHHHHHHH-HhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 22222222111100 233444444333211 112237999999988721 1234556666666655556666
Q ss_pred EEec
Q psy8497 198 VSAT 201 (2355)
Q Consensus 198 LSAT 201 (2355)
+++.
T Consensus 156 lt~~ 159 (226)
T PF06745_consen 156 LTSE 159 (226)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6665
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.93 E-value=2.4 Score=56.69 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=23.9
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
...+|||||+|++.... ...++..+. ..+++++++|...
T Consensus 109 ~~~IL~IDEIh~Ln~~q----QdaLL~~lE-~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ----QDALLPWVE-NGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCHHH----HHHHHHHhc-CceEEEEEecCCC
Confidence 45689999999875322 222333332 3567888887553
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=89.78 E-value=1.9 Score=45.02 Aligned_cols=37 Identities=11% Similarity=0.346 Sum_probs=24.2
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
.-.+|||||+|.+.+ +...+..+.... +..++++++-
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEcc
Confidence 345899999999875 446666666644 3456555443
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.73 E-value=2.2 Score=55.03 Aligned_cols=40 Identities=15% Similarity=0.372 Sum_probs=26.3
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.++||||+|+|....+ ..+.+.++..+....+|++|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998865332 34555555555556666655
|
|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.6 Score=47.83 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=75.5
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH-HHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA-VQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA-qQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
++|..++|-|||.+++-.++..+. .+.+|+|+-=.+.-. .--...++.+ .+.+..+-.+..... ....
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~----~g~~v~ivQFlKg~~~~GE~~~l~~~-----~~~~~~~g~g~~~~~--~~~~ 76 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALG----HGKKVGVIQFIKGAWPNGERAAFEPH-----GVEFQVMGTGFTWET--QNRE 76 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHH----CCCeEEEEEEecCCcccChHHHHHhc-----CcEEEECCCCCeecC--CCcH
Confidence 677888999999888877776665 477788774333210 0001122221 222222111111100 0000
Q ss_pred EEEECHHHHHHHHH--hhcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 140 IVVGSPGRIKQMIK--LKYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 140 ILVTTPErLLDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
-........+. ...+....+++||+||+=..++.++ ...+..++...|...-+|++.-.++.++.+...
T Consensus 77 ---~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 77 ---ADTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred ---HHHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 00011111221 1333457889999999998877764 456777888888777888777777766655443
|
Alternate name: corrinoid adenosyltransferase. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.5 Score=52.14 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=21.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
.++|++|||+|||.+... +...+... ..+.+|.||.
T Consensus 196 vi~~vGptGvGKTTt~~k-La~~~~~~-~g~~~V~li~ 231 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK-LAARFVLE-HGNKKVALIT 231 (282)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHHH-cCCCeEEEEE
Confidence 477899999999966543 33333311 0124555554
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=1.4 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=16.7
Q ss_pred CcEEEEccCCchHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAI 79 (2355)
.++|+.+|+|+|||.++-..+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 348999999999997766443
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.57 E-value=2.1 Score=52.39 Aligned_cols=134 Identities=11% Similarity=0.156 Sum_probs=66.5
Q ss_pred CcHHHHHHHHHHHc----C---CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh-c
Q psy8497 44 ESPIQMAAFPYVLN----G---YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG-A 115 (2355)
Q Consensus 44 LRPYQeEALn~LLS----G---RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg-k 115 (2355)
++|||...+..+.+ + +-.|+.+|.|.||+..+...+-..+....... . -|-. ...++.+. .
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-~---~Cg~-------C~sC~~~~~g 71 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-Q---PCGQ-------CHSCHLFQAG 71 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-C---CCCC-------CHHHHHHhcC
Confidence 46777777766653 3 24778999999999776644433333211111 1 1111 12233332 2
Q ss_pred ccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCc
Q psy8497 116 HVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193 (2355)
Q Consensus 116 ~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppnr 193 (2355)
..|++.++.-..+. .| .-+.+..+... ..-....+.++|||+||.|... -...+.++++.=|...
T Consensus 72 ~HPD~~~i~p~~~~---------~I---~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~ 138 (325)
T PRK06871 72 NHPDFHILEPIDNK---------DI---GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNT 138 (325)
T ss_pred CCCCEEEEccccCC---------CC---CHHHHHHHHHHHhhccccCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCe
Confidence 34454433211010 11 23334333322 1112357889999999998643 2355555665544444
Q ss_pred eEEEEEec
Q psy8497 194 QMLVVSAT 201 (2355)
Q Consensus 194 QILLLSAT 201 (2355)
.+|++|..
T Consensus 139 ~fiL~t~~ 146 (325)
T PRK06871 139 YFLLQADL 146 (325)
T ss_pred EEEEEECC
Confidence 44444443
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=89.46 E-value=2.4 Score=49.00 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=32.1
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
+.-++|.+++|+|||+.++..+...+. .+.+++|++..-. ..+..+.+..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g~~~~yi~~e~~-~~~~~~~~~~~ 74 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ----NGYSVSYVSTQLT-TTEFIKQMMSL 74 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh----CCCcEEEEeCCCC-HHHHHHHHHHh
Confidence 456899999999999665544443333 3567888885432 24444454444
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.44 E-value=1.8 Score=56.32 Aligned_cols=40 Identities=18% Similarity=0.377 Sum_probs=26.0
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.++||||+|+|.... ...+.++++.-+....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 3578899999999886432 345555666555555555544
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=89.43 E-value=2.4 Score=48.45 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHH---c-CC-cEEEEccCCchHHHHHH
Q psy8497 43 KESPIQMAAFPYVL---N-GY-DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 43 eLRPYQeEALn~LL---S-GR-NVILAAPTGSGKTLVAL 76 (2355)
.+.+.+.+++..+. . +. .++|.+|.|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 44555666666543 2 23 48899999999995543
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=89.41 E-value=3.7 Score=49.79 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
+++++|.|++|+|||..+. ++...+.. .+..++++
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~---~g~~v~~~ 190 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK---KGVSSTLL 190 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH---cCCCEEEE
Confidence 3579999999999997665 45555542 34444444
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.35 E-value=2.5 Score=52.87 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=28.2
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
..+.++||||+|+|.... ...+.++++.-+... ++++++|-+..+...+.
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPEDVLPTIR 165 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHHChHHHH
Confidence 567899999999986432 244555555433344 44444444444443333
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.28 E-value=2.6 Score=52.20 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=65.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCC------CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ------PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qg------gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk 133 (2355)
-.|+.+|.|.||+..+...+-..+.+..... ...|-+|+.-.. ..++.. ...|++.++.-..+.....
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~----c~~i~~--~~HPDl~~i~~~~~~~~~~ 116 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV----ARRIAA--GAHGGLLTLERSWNEKGKR 116 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH----HHHHHc--cCCCCeEEEeccccccccc
Confidence 4889999999999776644433333221111 123334443222 223322 3445665543221111100
Q ss_pred CCCCCcEEEECHHHHHHHHHhhc--ccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKLKY--LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdrr~--LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
....| +.+.+..+...-. .....+.+|||||+|.|-.. -...+.++++..+....+|++|..+.
T Consensus 117 --~~~~I---~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 117 --LRTVI---TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred --ccccc---cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCch
Confidence 01123 3344444433211 12356789999999987533 34556666665555555666555543
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=89.25 E-value=4.8 Score=48.06 Aligned_cols=130 Identities=19% Similarity=0.294 Sum_probs=71.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHH-HHHHHHHHHHHhcccCCcEEEEEECCccccCCCC
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREI-AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRAL-AqQ~anwLREFgk~APgLrVVvytGGkq~rkqir 136 (2355)
-+++++++|+|||.+..-.+. .+. ..+.++++|. +.+.- ..|...|..... +.+ +.....
T Consensus 74 vi~l~G~~G~GKTTt~akLA~-~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-----i~~--~~~~~~------ 136 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLAN-KLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-----VDV--IKQKEG------ 136 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-----eEE--EeCCCC------
Confidence 367789999999976554443 333 2356677776 33333 345555555542 221 111111
Q ss_pred CCcEEEECHHH-HHHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCC------CCceEEEEEeccChhHHH
Q psy8497 137 PVQIVVGSPGR-IKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLP------PMKQMLVVSATYSHDNLA 208 (2355)
Q Consensus 137 q~DILVTTPEr-LLDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~Lp------pnrQILLLSATLS~EILE 208 (2355)
..|.. +...+.. .....+++||||=+-++... .....+..+....+ +..-++.++||...+...
T Consensus 137 ------~dp~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~ 208 (272)
T TIGR00064 137 ------ADPAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE 208 (272)
T ss_pred ------CCHHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH
Confidence 01211 2222221 11356789999999876532 23344555555444 556678899998776666
Q ss_pred HHHHhc
Q psy8497 209 TLQKYM 214 (2355)
Q Consensus 209 lLkKfL 214 (2355)
.+..+.
T Consensus 209 ~~~~f~ 214 (272)
T TIGR00064 209 QAKVFN 214 (272)
T ss_pred HHHHHH
Confidence 555544
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=89.23 E-value=3.1 Score=43.28 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=25.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCC--CeEEEEcccHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQ--PQTIILAPTREIA 103 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qg--gRVLILVPTRALA 103 (2355)
++|.|+.|+|||.. +..+...+....... ..+++....+.+.
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEEEPPPSKFPYPFFFSLRDIS 46 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhcCcccccceEEEEEeehhhh
Confidence 78999999999954 445555555332222 2355555555553
|
|
| >PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] | Back alignment and domain information |
|---|
Probab=89.23 E-value=4.9 Score=46.63 Aligned_cols=145 Identities=16% Similarity=0.117 Sum_probs=59.2
Q ss_pred EEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH-HH---HHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA-VQ---ITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 62 ILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA-qQ---~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
||.++-|+|||.+..+.++..+.... ....++++ |+...+ .. ....+..+......+........ .... ...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~nG 76 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR-KIIL-PNG 76 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS-EEEE-TTS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC-cEEe-cCc
Confidence 57889999999887776766665311 12345555 555444 43 22333333322111221111111 1111 122
Q ss_pred CcEEEECHHHH--HHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEecc--ChhHHHHHHHh
Q psy8497 138 VQIVVGSPGRI--KQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY--SHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTPErL--LDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATL--S~EILElLkKf 213 (2355)
..|.+.+...- ...+ .-..+++|||||+-.+.+..+...+............ +++|.|+ ...........
T Consensus 77 ~~i~~~~~~~~~~~~~~-----~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~p~~~~~~~~~~~~~~ 150 (384)
T PF03237_consen 77 SRIQFRGADSPDSGDNI-----RGFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIR-MYISTPPNPGGWFYEIFQRN 150 (384)
T ss_dssp -EEEEES-----SHHHH-----HTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--E-EEEEE---SSSHHHHHHHHH
T ss_pred eEEEEeccccccccccc-----cccccceeeeeecccCchHHHHHHHHhhhhcccCcce-EEeecCCCCCCceeeeeehh
Confidence 33666663321 1112 2356779999998877654444443333333322222 2444433 33333444444
Q ss_pred ccC
Q psy8497 214 MVD 216 (2355)
Q Consensus 214 Lrd 216 (2355)
+..
T Consensus 151 ~~~ 153 (384)
T PF03237_consen 151 LDD 153 (384)
T ss_dssp HCT
T ss_pred hcC
Confidence 443
|
The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A. |
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=89.21 E-value=3.3 Score=46.37 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=76.2
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH-HHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA-VQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA-qQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
+.|-.++|.|||.+++..++..+. .+.+|+||-=.+.-. .--...++.+ +++.+.. .+.........
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~----~g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~--~g~~~~~~~~~-- 72 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALG----HGYRVGVVQFLKGGWKYGELKALERL----PNIEIHR--MGRGFFWTTEN-- 72 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEE--CCCCCccCCCC--
Confidence 566678899999888877776665 477888854333210 0001223332 3333332 22211110000
Q ss_pred EEEECHHHH---HHHHH--hhcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 140 IVVGSPGRI---KQMIK--LKYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 140 ILVTTPErL---LDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
..+.+ ...+. ...+....+++||+||+=...+.++ ...+..++...|...-+|+++-.++.++.+...
T Consensus 73 ----~~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 73 ----DEEDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred ----hHHHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 11111 11111 1333456889999999998776664 567777888888777888877777766655443
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=89.12 E-value=1.4 Score=49.90 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=26.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
|.-++|+|++|+|||...+-.++..+. ..+.+++|+..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~---~~g~~vly~s~ 50 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAK---KQGKPVLFFSL 50 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCceEEEeC
Confidence 445899999999999665544444443 12677888883
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=2.3 Score=56.03 Aligned_cols=39 Identities=21% Similarity=0.441 Sum_probs=24.5
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.++||||+|+|....+ ..+.++++.-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEEEE
Confidence 4688999999999875433 33444455444445555544
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=88.92 E-value=2 Score=56.83 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=65.9
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc-CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP 343 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr-GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP 343 (2355)
+.++||.++++..+..+.+.|.+. +..+..+||+++..+|..+...+..|..+|||+|.... -+.+..+.+||+-+..
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEeh 268 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEEH 268 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECCC
Confidence 358999999999999999988764 78899999999999999999999999999999997432 2567778888876643
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=88.89 E-value=2.8 Score=53.21 Aligned_cols=129 Identities=12% Similarity=0.198 Sum_probs=69.4
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
+++++++|+|||.++.-.+. ++.. .+.++++|+- .+.-+ .+|++.+.... ++.+......
T Consensus 103 i~lvG~~GvGKTTtaaKLA~-~l~~---~G~kV~lV~~D~~R~aA---~eQLk~~a~~~-~vp~~~~~~~---------- 164 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAY-YYQR---KGFKPCLVCADTFRAGA---FDQLKQNATKA-RIPFYGSYTE---------- 164 (429)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH---CCCCEEEEcCcccchhH---HHHHHHHhhcc-CCeEEeecCC----------
Confidence 67899999999966543333 3432 3556776663 34332 23333333222 2222211111
Q ss_pred cEEEECHHHH-HHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 139 QIVVGSPGRI-KQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 139 DILVTTPErL-LDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..|..+ ...+.. +....+++||||=+-++... .....+..+.....+..-++.++||..++....+..|
T Consensus 165 ----~dp~~i~~~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 165 ----SDPVKIASEGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred ----CCHHHHHHHHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 011111 112211 11245789999999876532 2345555666666666678889999887776666554
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=88.81 E-value=5.3 Score=51.49 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=30.0
Q ss_pred cCcCceEEEecccchhcccChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHH
Q psy8497 158 NMDSVRLFIMDEADKLINTGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 158 dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkK 212 (2355)
.+...++++||.+=+............++... .+...+|.|+||........+..
T Consensus 331 ~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~ 386 (484)
T PRK06995 331 ELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQ 386 (484)
T ss_pred hccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHH
Confidence 35566799999976543221111222223222 13336788999988765554443
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.81 E-value=4.3 Score=47.41 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=23.9
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+|||||+|.+.... ...+..++...+....+|+++
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 45699999999885432 244555555555555555544
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=88.70 E-value=3.4 Score=44.77 Aligned_cols=54 Identities=22% Similarity=0.414 Sum_probs=30.5
Q ss_pred cCceEEEecccchhc-ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 160 DSVRLFIMDEADKLI-NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 160 SkIdLLIVDEAHRLk-N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
...++||||....+. +......+..+.....+..-++.+.+.........+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 456789999998753 222334444444444445556667776555554444443
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=4.8 Score=51.11 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=61.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
-+.|.+|+|+|||......+...+.. .....-.+|.+.+.-+. ..+.+..++... ++.+
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~~-~~~~~v~~i~~d~~rig--alEQL~~~a~il-Gvp~----------------- 251 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIR-HGADKVALLTTDSYRIG--GHEQLRIYGKLL-GVSV----------------- 251 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEecCCcchh--HHHHHHHHHHHc-CCce-----------------
Confidence 48889999999996544333222221 11122344444442221 122232232221 2211
Q ss_pred EEEECHHHHHHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHH
Q psy8497 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 140 ILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkK 212 (2355)
..+.++..+...+. .+...++++||.+=+.... .....+..+.....+...+|.|+||........+..
T Consensus 252 ~~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~ 321 (420)
T PRK14721 252 RSIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS 321 (420)
T ss_pred ecCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH
Confidence 12233443433332 2556789999997433211 122333333222334456788999987766655443
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=88.23 E-value=2.3 Score=48.08 Aligned_cols=59 Identities=24% Similarity=0.314 Sum_probs=35.3
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
.|..++. +..++|.+++|+|||..++..+...+. .+..++|+... ....++.+..+.++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~----~g~~~~~is~e-~~~~~i~~~~~~~g 71 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR----DGDPVIYVTTE-ESRESIIRQAAQFG 71 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh----cCCeEEEEEcc-CCHHHHHHHHHHhC
Confidence 4555553 456899999999999665544444433 35567777742 22344444544443
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=1.3 Score=58.35 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=67.6
Q ss_pred CCeEEEEEcccccHHHHHHHHHh----cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-ccccCCCCccEEEE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLAN----ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA-ARGIDAANVDLVIN 339 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrE----rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL-GEGLDLPaVDTVII 339 (2355)
+.++||.++|+..+..+++.|.. .++.+..++|+++..+|..++..+.+|.++|||+|.++ ...+.+..+.+||+
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 45899999999999877766654 46899999999999999999999999999999999754 45678889999997
Q ss_pred ecCCC
Q psy8497 340 LEIPH 344 (2355)
Q Consensus 340 yDSP~ 344 (2355)
-..+.
T Consensus 390 DE~Hr 394 (681)
T PRK10917 390 DEQHR 394 (681)
T ss_pred echhh
Confidence 66653
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=88.04 E-value=2 Score=55.17 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc-CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr-GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS 342 (2355)
+.++||.++++..+..+.+.|.+. +..+..+||+++..+|..+......|+..|+|+|...-. +-+..+.+||+-+.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEECC
Confidence 458999999999999999988764 678999999999999999999999999999999975432 45677888886654
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=6.1 Score=50.33 Aligned_cols=130 Identities=19% Similarity=0.246 Sum_probs=71.0
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHH-HHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREI-AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRAL-AqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++++|+|||.++.-.+. ++.. ..+.++++|. +.+.. ..|+..|.... ++.+. ....
T Consensus 103 I~~vG~~GsGKTTtaakLA~-~l~~--~~G~kV~lV~~D~~R~aa~eQL~~~a~~~-----gv~v~--~~~~-------- 164 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK-YLKK--KKKKKVLLVAADVYRPAAIEQLKTLGEQI-----GVPVF--PSGD-------- 164 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH-HHHH--hcCCcEEEEEccccchHHHHHHHHHHhhc-----CCeEE--ecCC--------
Confidence 67899999999976554443 4442 1245566665 34443 35666665543 22221 1110
Q ss_pred CcEEEECHHHHH-HHHHhhcccCcCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhc
Q psy8497 138 VQIVVGSPGRIK-QMIKLKYLNMDSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214 (2355)
Q Consensus 138 ~DILVTTPErLL-DLLdrr~LdLSkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfL 214 (2355)
...|..+. ..+.. .....+++||||=+=++.. ......+..+.....+..-++.+.|+..++....+..+.
T Consensus 165 ----~~dp~~i~~~a~~~--a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~ 237 (433)
T PRK10867 165 ----GQDPVDIAKAALEE--AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFN 237 (433)
T ss_pred ----CCCHHHHHHHHHHH--HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHH
Confidence 01233332 22211 1234578999999877642 223345555555555555577788887766666666554
|
|
| >PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 | Back alignment and domain information |
|---|
Probab=87.82 E-value=3.8 Score=46.53 Aligned_cols=134 Identities=12% Similarity=0.182 Sum_probs=68.0
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
+.|--..|=|||.+++-.+++.+- .+.+|+||-=.+.- .....+..+ ..++++.+.. .+... +
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G----~G~rV~ivQFlKg~--~~~GE~~~l-~~l~~~~~~~--~g~~f--------~ 68 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAG----HGMRVLIVQFLKGG--RYSGELKAL-KKLPNVEIER--FGKGF--------V 68 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHC----TT--EEEEESS--S--S--HHHHHH-GGGT--EEEE----TT----------
T ss_pred EEEEeCCCCCchHHHHHHHHHHHh----CCCEEEEEEEecCC--CCcCHHHHH-HhCCeEEEEE--cCCcc--------c
Confidence 566677899999988888877665 47889999876651 011222222 2333333322 11111 1
Q ss_pred EEECHH-----HHHHHHHh--hcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 141 VVGSPG-----RIKQMIKL--KYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 141 LVTTPE-----rLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
.-..++ .+...+.. ..+....+++||+||+=..++.++ ...+..++...|...-+|++.-.++..+.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 69 WRMNEEEEDRAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp --GGGHHHHHHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 111111 12222221 334457899999999998887775 566777777777777778777777766555443
|
5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A. |
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=3.7 Score=53.56 Aligned_cols=40 Identities=10% Similarity=0.299 Sum_probs=26.5
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
.....+|||||+|+|.... ...+..+++..+....+|++|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999986533 345556666555556666655
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=87.67 E-value=0.76 Score=54.13 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=15.1
Q ss_pred cEEEEccCCchHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVV 77 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALI 77 (2355)
++|+.+|.|+|||..+.+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 599999999999966553
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.57 E-value=6.8 Score=48.65 Aligned_cols=129 Identities=18% Similarity=0.264 Sum_probs=76.6
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++..|+|||.. +.-+..++. ..+.++|+.+ ..|+ .+.|+..|-+..+ ..++. +.... .+
T Consensus 142 il~vGVNG~GKTTT-IaKLA~~l~---~~g~~VllaA~DTFRAaAiEQL~~w~er~g-----v~vI~--~~~G~----Dp 206 (340)
T COG0552 142 ILFVGVNGVGKTTT-IAKLAKYLK---QQGKSVLLAAGDTFRAAAIEQLEVWGERLG-----VPVIS--GKEGA----DP 206 (340)
T ss_pred EEEEecCCCchHhH-HHHHHHHHH---HCCCeEEEEecchHHHHHHHHHHHHHHHhC-----CeEEc--cCCCC----Cc
Confidence 67799999999955 434444444 3567777776 3444 4477777777763 33322 21100 00
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCc------eEEEEEeccChhHHHHH
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMK------QMLVVSATYSHDNLATL 210 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lppnr------QILLLSATLS~EILElL 210 (2355)
.-| +.+.+... .-+.+++||+|=|=||-+.. .-..+.+|.+-+.+.. -++.+=||..++.+.+.
T Consensus 207 AaV-------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA 277 (340)
T COG0552 207 AAV-------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA 277 (340)
T ss_pred HHH-------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH
Confidence 111 22333322 24678899999999987653 3455555555554433 33444899999888877
Q ss_pred HHh
Q psy8497 211 QKY 213 (2355)
Q Consensus 211 kKf 213 (2355)
+.|
T Consensus 278 k~F 280 (340)
T COG0552 278 KIF 280 (340)
T ss_pred HHH
Confidence 765
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=1.7 Score=53.23 Aligned_cols=63 Identities=16% Similarity=0.326 Sum_probs=42.0
Q ss_pred HHHCCCCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 36 LQENGFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 36 Lqa~GF~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
+...|. +.+.|.+.|..+.. +.++||+++||+||| .++-+++..+... ....++++|=...+|
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKT-Tll~aL~~~i~~~-~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKT-TLANAVIAEIVAS-APEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHHHhcC-CCCceEEEecCCccc
Confidence 334443 67788888776665 568999999999999 4455666655321 234567776666666
|
|
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=87.39 E-value=0.48 Score=52.74 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=11.5
Q ss_pred EEEEccCCchHHH
Q psy8497 61 AIVQSKSGTGKSI 73 (2355)
Q Consensus 61 VILAAPTGSGKTL 73 (2355)
++|.|+.|+|||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4799999999994
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=87.37 E-value=1.5 Score=50.00 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=37.9
Q ss_pred HHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 50 AAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 50 EALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..|..++.| .-++|.+++|+|||..+...+...+. .+.+++|+.-.... .++.+.+..+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~----~g~~~~y~~~e~~~-~~~~~~~~~~g 76 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK----QGKKVYVITTENTS-KSYLKQMESVK 76 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh----CCCEEEEEEcCCCH-HHHHHHHHHCC
Confidence 455666643 34888999999999766655444443 36778888754333 44555555553
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=3.8 Score=54.09 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=24.2
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
.....+|||||+|.|.... ...+...++.-+...-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999986432 234444455444444444444
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.34 E-value=2.9 Score=51.18 Aligned_cols=144 Identities=11% Similarity=0.077 Sum_probs=71.0
Q ss_pred CCcHHHHHHHHHHHc----CC---cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh-
Q psy8497 43 KESPIQMAAFPYVLN----GY---DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG- 114 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GR---NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg- 114 (2355)
.++|||...+..+.+ ++ -.|+.+|.|.||+..+.. +...|.-........-=.|+. ++.+.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC~~~~~~~~Cg~C~s----------C~~~~~ 70 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMCQQPQGHKSCGHCRG----------CQLMQA 70 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCCHH----------HHHHHc
Confidence 467888888877753 32 378999999999976654 444443211111111111222 22221
Q ss_pred cccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhh--cccCcCceEEEecccchhcccChHHHHHHHHHhCCCC
Q psy8497 115 AHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLK--YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr--~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn 192 (2355)
...|++..+.-.++. . ..+-+.+..+...- .-....+.++|||+|+.|-.. -.+.+.++++.=+..
T Consensus 71 g~HPD~~~i~p~~~~--------~---~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~ 138 (334)
T PRK07993 71 GTHPDYYTLTPEKGK--------S---SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDA-AANALLKTLEEPPEN 138 (334)
T ss_pred CCCCCEEEEeccccc--------c---cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCC
Confidence 334555543221110 0 11233344333221 112467889999999998643 235555555553333
Q ss_pred ceEEEEEeccChhHHHHH
Q psy8497 193 KQMLVVSATYSHDNLATL 210 (2355)
Q Consensus 193 rQILLLSATLS~EILElL 210 (2355)
.-+|++| .-+..++..+
T Consensus 139 t~fiL~t-~~~~~lLpTI 155 (334)
T PRK07993 139 TWFFLAC-REPARLLATL 155 (334)
T ss_pred eEEEEEE-CChhhChHHH
Confidence 4444444 4333343333
|
|
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=87.27 E-value=1.9 Score=54.15 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=29.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
+.+++++|.|+|||+.+=..+- ..+.+.+=|-..+|+.-|.-.-++
T Consensus 246 kgvLm~GPPGTGKTlLAKAvAT--------Ec~tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVAT--------ECGTTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHH--------hhcCeEEEechhhhhhhhccchHH
Confidence 5699999999999966542222 123566777777775544433333
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.19 E-value=2.6 Score=52.07 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHcC-----CcEEEEccCCchHHHHHHHHHH
Q psy8497 44 ESPIQMAAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAAL 80 (2355)
Q Consensus 44 LRPYQeEALn~LLSG-----RNVILAAPTGSGKTLVALIAIL 80 (2355)
++|||...+..+.+- +..++.+|.|.||+..+...+-
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~ 43 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQ 43 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHH
Confidence 478888888887752 2478999999999977664443
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=87.18 E-value=7.6 Score=44.68 Aligned_cols=51 Identities=24% Similarity=0.398 Sum_probs=32.2
Q ss_pred EEEEccCCchHHHHHHHHHHHHHH--------hcCCCCCeEEEEc---ccHHHHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLI--------KLPVQQPQTIILA---PTREIAVQITDVVR 111 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~--------ekr~qggRVLILV---PTRALAqQ~anwLR 111 (2355)
.+|++|.|+|||..++..++.... .......+|||+. |...+...+.....
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 689999999999776655554321 1123467899998 55555444443333
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.17 E-value=3.2 Score=53.45 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=17.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ 84 (2355)
.|+.+|.|+|||.++. ++...+.
T Consensus 39 ~Lf~GppGtGKTTlA~-~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR-LIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHh
Confidence 5999999999997765 4444443
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=87.07 E-value=4.9 Score=53.68 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=15.4
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.++||.+|+|+|||.++-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999996654
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=3.9 Score=52.35 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHcCCcEEEEccCCchHHHHHH
Q psy8497 44 ESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 44 LRPYQeEALn~LLSGRNVILAAPTGSGKTLVAL 76 (2355)
+.......+..+..++++|+.+|+|+|||.++.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667777788999999999999997665
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=86.85 E-value=1.8 Score=56.65 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=67.2
Q ss_pred CCeEEEEEcccccHHHHHHHHHh----cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-ccccCCCCccEEEE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLAN----ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA-ARGIDAANVDLVIN 339 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrE----rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL-GEGLDLPaVDTVII 339 (2355)
+.++||.++++..+..+++.+.+ .++++..++|+++..+|..+++.+.+|.++|||+|..+ ...+.+..+.+||+
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 35899999999999887776654 47899999999999999999999999999999999754 34577888998887
Q ss_pred ecCCC
Q psy8497 340 LEIPH 344 (2355)
Q Consensus 340 yDSP~ 344 (2355)
-..+.
T Consensus 364 DEaH~ 368 (630)
T TIGR00643 364 DEQHR 368 (630)
T ss_pred echhh
Confidence 66653
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=3.7 Score=54.29 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=16.7
Q ss_pred cEEEEccCCchHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAAL 80 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAIL 80 (2355)
.+|+.+|.|+|||.++.+.+-
T Consensus 40 a~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478899999999987765443
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=86.64 E-value=3.1 Score=51.79 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=55.3
Q ss_pred HHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 50 AAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 50 EALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
..|+.++.+ .-++|.+++|+|||...+..+ ..+. ..+.++|||.-.. -..|+......+.....
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a-~~~a---~~g~~VlYvs~EE-s~~qi~~Ra~rlg~~~~------ 137 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVA-ARLA---KRGGKVLYVSGEE-SPEQIKLRADRLGISTE------ 137 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHH-HHHH---hcCCeEEEEECCc-CHHHHHHHHHHcCCCcc------
Confidence 456677653 348899999999996555433 3333 2346789987543 33555555555532111
Q ss_pred EECCccccCCCCCCcEEE---ECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 125 FIGGTQVERPKRPVQIVV---GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 125 ytGGkq~rkqirq~DILV---TTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
.+.+ +..+.+...+. ....++||||+++.+.
T Consensus 138 --------------~l~l~~e~~le~I~~~i~-----~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 138 --------------NLYLLAETNLEDILASIE-----ELKPDLVIIDSIQTVY 171 (372)
T ss_pred --------------cEEEEccCcHHHHHHHHH-----hcCCcEEEEcchHHhh
Confidence 1112 12344444442 2356799999999875
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=86.63 E-value=1.2 Score=49.88 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=27.9
Q ss_pred HHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 51 AFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 51 ALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
...|+..+.+++|.+++|+|||..+... ...+.. .+..+++ ++...|+
T Consensus 40 ~~~~~~~~~~l~l~G~~G~GKThLa~ai-~~~~~~---~g~~v~f-~~~~~L~ 87 (178)
T PF01695_consen 40 ALEFIENGENLILYGPPGTGKTHLAVAI-ANEAIR---KGYSVLF-ITASDLL 87 (178)
T ss_dssp HH-S-SC--EEEEEESTTSSHHHHHHHH-HHHHHH---TT--EEE-EEHHHHH
T ss_pred cCCCcccCeEEEEEhhHhHHHHHHHHHH-HHHhcc---CCcceeE-eecCcee
Confidence 3344456788999999999999887644 444442 3455555 4555663
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=86.62 E-value=2.5 Score=53.60 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=56.5
Q ss_pred HHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 50 AAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 50 EALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
..|+.++.| .-++|.+++|+|||...+..+. .+. ..+.++||+.-.- -..|+......+......
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~-~~a---~~g~~vlYvs~Ee-s~~qi~~ra~rlg~~~~~----- 136 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAA-RLA---AAGGKVLYVSGEE-SASQIKLRAERLGLPSDN----- 136 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHH-HHH---hcCCeEEEEEccc-cHHHHHHHHHHcCCChhc-----
Confidence 456777753 3478999999999965554433 333 2356889988543 345666666555322111
Q ss_pred EECCccccCCCCCCcEEEE---CHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 125 FIGGTQVERPKRPVQIVVG---SPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 125 ytGGkq~rkqirq~DILVT---TPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
+.+. ..+.+...+. -...++||||+++.+..
T Consensus 137 ---------------l~~~~e~~l~~i~~~i~-----~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 137 ---------------LYLLAETNLEAILATIE-----EEKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---------------EEEeCCCCHHHHHHHHH-----hhCCCEEEEechhhhcc
Confidence 1122 2233434332 23567999999997753
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.58 E-value=3.5 Score=52.37 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=15.4
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.+||.||.|+|||.++-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999995544
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=4.2 Score=47.49 Aligned_cols=60 Identities=27% Similarity=0.301 Sum_probs=38.7
Q ss_pred HHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 50 AAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 50 EALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..|..++.| ..++|.+++|+|||+.++..+...+. .+.++|||.- .+-..++.+.+..++
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~----~ge~~lyis~-ee~~~~i~~~~~~~g 74 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MGEPGVYVAL-EEHPVQVRRNMRQFG 74 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh----cCCcEEEEEe-eCCHHHHHHHHHHcC
Confidence 356666643 45888999999999766655555444 3567788773 233344566666664
|
|
| >KOG2028|consensus | Back alignment and domain information |
|---|
Probab=86.52 E-value=1.8 Score=53.84 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=29.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
.+|+.+|.|+|||..+-+.+... ....-++|-+.-+.+-++.+...+++
T Consensus 164 SmIlWGppG~GKTtlArlia~ts----k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTS----KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhc----CCCceEEEEEeccccchHHHHHHHHH
Confidence 48999999999996654333211 11224466666666665554444443
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.44 E-value=3.4 Score=52.85 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=14.9
Q ss_pred EEEEccCCchHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVA 78 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIA 78 (2355)
+|+.||.|+|||.++.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999766543
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=86.39 E-value=4.5 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=17.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ 84 (2355)
..|+.||.|+|||..+. .+...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~-~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR-IFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHhc
Confidence 47899999999995544 4444444
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.02 E-value=6.8 Score=45.56 Aligned_cols=139 Identities=16% Similarity=0.153 Sum_probs=76.3
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHH-HHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQI-TDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~-anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
++|.-..|=|||.+++-.+++.+- .+.+++||-=.+--...- ...+..|.. .+....+--+...+......+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~G----hG~rv~vvQFiKg~~~~GE~~~~~~~~~---~v~~~~~~~g~tw~~~~~~~d 103 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALG----HGLRVGVVQFIKGGWKYGEEAALEKFGL---GVEFHGMGEGFTWETQDREAD 103 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhc----CCCEEEEEEEeecCcchhHHHHHHhhcc---ceeEEecCCceeCCCcCcHHH
Confidence 677788899999999888887765 477888876443221111 122222210 111111111111111111122
Q ss_pred EEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 140 IVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 140 ILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
+ ......+.. ..+.-..+++||+||+-..+..++ ...+..++...|...-+|++.-..++.+.+...
T Consensus 104 ~-----~aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 104 I-----AAAKAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred H-----HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 2 112222211 233445799999999998777664 566777777777777777766666666665554
|
|
| >PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 | Back alignment and domain information |
|---|
Probab=85.90 E-value=0.56 Score=52.61 Aligned_cols=36 Identities=11% Similarity=0.299 Sum_probs=24.4
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.++.+||.+|||.- ++-.+..+. ..+.++|++-|..
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~---~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYE---IAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHH---HTT-EEEEEEEST
T ss_pred EEEECCcCChhHHH-HHHHHHHHH---hCCCeEEEEEecc
Confidence 47889999999944 444444444 2567788888864
|
7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F .... |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.87 E-value=4 Score=54.97 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=19.9
Q ss_pred HHHHHHHc--CCcEEEEccCCchHHHHHHHH
Q psy8497 50 AAFPYVLN--GYDAIVQSKSGTGKSIVFVVA 78 (2355)
Q Consensus 50 EALn~LLS--GRNVILAAPTGSGKTLVALIA 78 (2355)
+.+..|.+ ..++||.+|+|+|||.++-..
T Consensus 197 ~~i~iL~r~~~~n~LLvGppGvGKT~lae~l 227 (758)
T PRK11034 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHH
Confidence 33444443 357999999999999665433
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=85.85 E-value=2 Score=52.29 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=42.4
Q ss_pred HHHHCCCCCCcHHHHHHHHHHH-cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 35 GLQENGFVKESPIQMAAFPYVL-NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 35 ~Lqa~GF~eLRPYQeEALn~LL-SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.|-..|+ +.+.|.+.|..+. .+.++||+++||+||| .++-+++..+.. .....++++|-.+.+|
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~-~~~~~rivtIEd~~El 190 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVI-QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhh-cCCCceEEEEcCCCcc
Confidence 3334454 6678888887655 4678999999999999 555566554431 1234567777777666
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=85.78 E-value=2.3 Score=49.08 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=26.0
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.+.-++|.+++|+|||...+..+...+. ..+.+++|+.-
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~---~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLIT---QHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH---hcCceEEEEEc
Confidence 4556899999999999655544443322 12567888874
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] | Back alignment and domain information |
|---|
Probab=85.61 E-value=1.6 Score=53.42 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=30.7
Q ss_pred EEEEccCCchHHHHHHHHHHH-HHHhcCCCCCeEEEEcccHHHH--HHHHHHHHHHh
Q psy8497 61 AIVQSKSGTGKSIVFVVAALN-KLIKLPVQQPQTIILAPTREIA--VQITDVVRSVG 114 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILe-rL~ekr~qggRVLILVPTRALA--qQ~anwLREFg 114 (2355)
++|-+|||+||+ ..+-.++. .+. ......|++|+|.+-.+ +++..|-.++.
T Consensus 90 ~~VYGPTG~GKS-qLlRNLis~~lI--~P~PETVfFItP~~~mIpp~E~~aW~~Ql~ 143 (369)
T PF02456_consen 90 GVVYGPTGSGKS-QLLRNLISCQLI--QPPPETVFFITPQKDMIPPQEITAWETQLC 143 (369)
T ss_pred EEEECCCCCCHH-HHHHHhhhcCcc--cCCCCceEEECCCCCCCCHHHHHHHHHHHH
Confidence 688999999999 32222221 111 12345699999988665 44455555543
|
During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription |
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=85.54 E-value=9.7 Score=44.27 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=30.5
Q ss_pred HHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 51 AFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 51 ALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.|+.++.| .=+||+|.+|.|||..++-.++..+.. .+.+|+|++.
T Consensus 8 ~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~---~~~~vly~Sl 56 (259)
T PF03796_consen 8 ALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALN---GGYPVLYFSL 56 (259)
T ss_dssp HHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHT---TSSEEEEEES
T ss_pred HHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHh---cCCeEEEEcC
Confidence 34555543 338999999999996666555555542 2478999986
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=6.8 Score=51.26 Aligned_cols=38 Identities=16% Similarity=0.387 Sum_probs=22.3
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
.....+|||||+|.|.... ...+...+...+....+|+
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEE
Confidence 3567899999999886432 2334444444443333343
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=85.46 E-value=2.8 Score=51.16 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=13.9
Q ss_pred CcEEEEccCCchHHHH
Q psy8497 59 YDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 59 RNVILAAPTGSGKTLV 74 (2355)
.+++|+++++-|||.+
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 4699999999999954
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=85.39 E-value=4.8 Score=52.43 Aligned_cols=40 Identities=18% Similarity=0.401 Sum_probs=27.7
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.++||||+|+|.... ...+..+++..+....+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 3578899999999986433 345566666666666666655
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=85.32 E-value=3.5 Score=53.61 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=15.8
Q ss_pred cEEEEccCCchHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAI 79 (2355)
-.|+.+|.|+|||.++-+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999997766444
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=85.27 E-value=10 Score=48.40 Aligned_cols=130 Identities=23% Similarity=0.278 Sum_probs=69.6
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++++|+|||.++.-.+.. +.. ..+.++++|. +.+. ...|+..+..... +.+.... .
T Consensus 102 i~~vG~~GsGKTTtaakLA~~-l~~--~~g~kV~lV~~D~~R~~a~~QL~~~a~~~g-----vp~~~~~--~-------- 163 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY-LKK--KQGKKVLLVACDLYRPAAIEQLKVLGQQVG-----VPVFALG--K-------- 163 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH-HHH--hCCCeEEEEeccccchHHHHHHHHHHHhcC-----CceEecC--C--------
Confidence 788999999999776544443 321 1245566655 3333 3355555554432 2211100 0
Q ss_pred CcEEEECHHHH-HHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhc
Q psy8497 138 VQIVVGSPGRI-KQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214 (2355)
Q Consensus 138 ~DILVTTPErL-LDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfL 214 (2355)
-..|..+ ...+.. +....+++||||=+=++... .....+..+...+.+..-++.+.|+...+....+..+.
T Consensus 164 ----~~~P~~i~~~al~~--~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~ 236 (428)
T TIGR00959 164 ----GQSPVEIARRALEY--AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFN 236 (428)
T ss_pred ----CCCHHHHHHHHHHH--HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHH
Confidence 0123222 222221 12345789999999876532 23445555555555555677788887766666665543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=85.23 E-value=1.1 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=15.2
Q ss_pred EEEEccCCchHHHHHHHH-HHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVA-ALNKLI 84 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIA-ILerL~ 84 (2355)
.+++|.+|+|||+.++.. ++..+.
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~ 27 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALK 27 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGG
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHh
Confidence 478999999999877666 444333
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=85.19 E-value=19 Score=44.25 Aligned_cols=129 Identities=20% Similarity=0.262 Sum_probs=67.4
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc-c-cHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA-P-TRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV-P-TRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
++|.+|+|+|||.+.. .+...+. ..+.+|+++. . .+. .+.|+..|.... ++.++.. ....
T Consensus 117 i~lvGpnGsGKTTt~~-kLA~~l~---~~g~~V~Li~~D~~r~~a~eql~~~a~~~-----~i~~~~~--~~~~------ 179 (318)
T PRK10416 117 ILVVGVNGVGKTTTIG-KLAHKYK---AQGKKVLLAAGDTFRAAAIEQLQVWGERV-----GVPVIAQ--KEGA------ 179 (318)
T ss_pred EEEECCCCCcHHHHHH-HHHHHHH---hcCCeEEEEecCccchhhHHHHHHHHHHc-----CceEEEe--CCCC------
Confidence 6788999999996544 3333333 2356677765 2 233 235555554443 2222111 1000
Q ss_pred CcEEEECHH-HHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhC------CCCceEEEEEeccChhHHHH
Q psy8497 138 VQIVVGSPG-RIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQL------PPMKQMLVVSATYSHDNLAT 209 (2355)
Q Consensus 138 ~DILVTTPE-rLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~L------ppnrQILLLSATLS~EILEl 209 (2355)
.|. ...+.+... ....+++||||=+-++.... ....+..+...+ .+..-++.++||...+....
T Consensus 180 ------dpa~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~ 251 (318)
T PRK10416 180 ------DPASVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ 251 (318)
T ss_pred ------CHHHHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH
Confidence 111 111222111 13667899999998765332 223444444322 23446788999988776666
Q ss_pred HHHhc
Q psy8497 210 LQKYM 214 (2355)
Q Consensus 210 LkKfL 214 (2355)
+..+.
T Consensus 252 a~~f~ 256 (318)
T PRK10416 252 AKAFH 256 (318)
T ss_pred HHHHH
Confidence 65543
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=85.02 E-value=6.2 Score=46.50 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=32.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc---cHHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP---TREIAVQITDVVRSV 113 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP---TRALAqQ~anwLREF 113 (2355)
.-++|.+++|+|||..++..+...+. .+.+++|+.- ...+..++......+
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~----~Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQAS----RGNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHh----CCCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 34889999999999766654444433 3668888883 334444444444444
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=84.62 E-value=4.6 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=18.1
Q ss_pred ccccCcchhhhhhccccCCCCC
Q psy8497 703 DNKLTPVDFDYINDFVNQTPSE 724 (2355)
Q Consensus 703 ~~~~~~~~~~~~~~~~n~~~~~ 724 (2355)
+.++++....|.++|.|....+
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~ 491 (605)
T PRK05896 470 DIELSKNMLQKFNKFKNEESAE 491 (605)
T ss_pred HHHhhhHHHHHHHhhhhhhhhh
Confidence 4477888999999999987776
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.59 E-value=4.1 Score=51.53 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=30.6
Q ss_pred CceEEEecccchhccc-ChHHHHHHHHHhCCCC-ceEEEEEeccChhH
Q psy8497 161 SVRLFIMDEADKLINT-GFVEDITWIYSQLPPM-KQMLVVSATYSHDN 206 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~-GF~SrLeeILs~Lppn-rQILLLSATLS~EI 206 (2355)
.+++++||.++.+... .....+..++..+... .|+|+.|..++...
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 6789999999988755 2345555666665443 47777776666443
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.52 E-value=6.5 Score=48.25 Aligned_cols=136 Identities=17% Similarity=0.193 Sum_probs=69.0
Q ss_pred CCcHHHHHHHHHHHc----CC---cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH-h
Q psy8497 43 KESPIQMAAFPYVLN----GY---DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV-G 114 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GR---NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF-g 114 (2355)
.++|||...+..+.+ ++ -.++.+|.|.||+..+...+-..+.... ... -|.. ...++.+ .
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~-~~~----~Cg~-------C~sC~~~~~ 70 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNY-QSE----ACGF-------CHSCELMQS 70 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCC-CCC----CCCC-------CHHHHHHHc
Confidence 567888888877663 32 4889999999999666544433333211 111 1111 1122222 1
Q ss_pred cccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccChHHHHHHHHHhCCCC
Q psy8497 115 AHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn 192 (2355)
...|++.++.-.+.. . .| +-+.+..+... ..-....+.++|||+||+|... -.+.+.++++.=+..
T Consensus 71 g~HPD~~~i~p~~~~---~-----~I---~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~ 138 (319)
T PRK06090 71 GNHPDLHVIKPEKEG---K-----SI---TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNES-ASNALLKTLEEPAPN 138 (319)
T ss_pred CCCCCEEEEecCcCC---C-----cC---CHHHHHHHHHHHhhCcccCCceEEEecchhhhCHH-HHHHHHHHhcCCCCC
Confidence 334555443221100 0 11 23334333221 1112456889999999998643 235555666654444
Q ss_pred ceEEEEEecc
Q psy8497 193 KQMLVVSATY 202 (2355)
Q Consensus 193 rQILLLSATL 202 (2355)
..+|++|..+
T Consensus 139 t~fiL~t~~~ 148 (319)
T PRK06090 139 CLFLLVTHNQ 148 (319)
T ss_pred eEEEEEECCh
Confidence 4455554443
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=84.51 E-value=2.8 Score=50.61 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 43 KESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 43 eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.+.+-|.+.|..+.+ +.++||+++||+||| .++-+++..+.. .....++++|=-..+|
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~al~~~i~~-~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKT-TLANALLAEIAK-NDPTDRVVIIEDTREL 174 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHHhhc-cCCCceEEEECCchhh
Confidence 355666676666554 568999999999999 445566655542 1234577777777776
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >KOG0739|consensus | Back alignment and domain information |
|---|
Probab=84.22 E-value=7.5 Score=47.85 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=68.3
Q ss_pred HHHHcCC-----cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEEC
Q psy8497 53 PYVLNGY-----DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIG 127 (2355)
Q Consensus 53 n~LLSGR-----NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytG 127 (2355)
|.++.++ .++|.+|.|+||+..+-..+- ....+.+-|-++.|+..|.-.-+++...
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT--------EAnSTFFSvSSSDLvSKWmGESEkLVkn----------- 216 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT--------EANSTFFSVSSSDLVSKWMGESEKLVKN----------- 216 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh--------hcCCceEEeehHHHHHHHhccHHHHHHH-----------
Confidence 4455553 389999999999954332221 1224677788888865544443333110
Q ss_pred CccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC---hHHHHHHH----HHhC----CCCceEE
Q psy8497 128 GTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG---FVEDITWI----YSQL----PPMKQML 196 (2355)
Q Consensus 128 Gkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G---F~SrLeeI----Ls~L----ppnrQIL 196 (2355)
|..+.+ -....+|.|||++.|.... -.....+| +-.+ ...--+|
T Consensus 217 --------------------LFemAR-----e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 217 --------------------LFEMAR-----ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred --------------------HHHHHH-----hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 222222 2344589999999775321 11111122 2222 1234688
Q ss_pred EEEeccChhHHHH-HHHhccCCeeecc
Q psy8497 197 VVSATYSHDNLAT-LQKYMVDPLLIRP 222 (2355)
Q Consensus 197 LLSATLS~EILEl-LkKfLrdPvIIrV 222 (2355)
.|.||-.++.+.. +.+.+...+.|..
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYIPL 298 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceeccC
Confidence 9999988887754 4444444444433
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.09 E-value=3.8 Score=50.05 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.1
Q ss_pred cEEEEccCCchHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAI 79 (2355)
.+++.+|.|+|||..+.+.+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHH
Confidence 49999999999997665443
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=84.04 E-value=5.4 Score=53.13 Aligned_cols=77 Identities=17% Similarity=0.064 Sum_probs=64.5
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcC--CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANAN--FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErG--IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS 342 (2355)
+.++||.++.+..+..+...|.... ..+..+|++++..+|.+.......|+.+|+|+|+.+ .=+=+++..+||+.+-
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA-vFaP~~~LgLIIvdEE 266 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA-VFAPVEDLGLVAIWDD 266 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-EEeccCCCCEEEEEcC
Confidence 4589999999999999999998764 568999999999999999999999999999999863 3345566677776553
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.97 E-value=2.2 Score=58.22 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=55.5
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-----CccEE-eeCCCCHHHHHHHHHHHhCCCccEEEEecc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN-----FGAEY-LSGAQDQKARLASLDSFKRGKVRILVTTDL 324 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG-----IKVar-LHGgMSqEERqeILErFRSGEIdVLVSTSA 324 (2355)
+..+.-..++.++++.++|...+..+++.|.... +.+.. +|+.|+..+++.++++|.+|+++|||+|..
T Consensus 116 ~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 116 LMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3344444455799999999999988888887642 44333 899999999999999999999999999975
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=83.60 E-value=6.4 Score=53.74 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.++||.+|+|.|||.++-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 479999999999996654
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=83.54 E-value=2.4 Score=50.19 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=34.9
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcC-C-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 36 LQENGFVKESPIQMAAFPYVLNG-Y-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 36 Lqa~GF~eLRPYQeEALn~LLSG-R-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
|..+|+ .+.|.+.|..++.. . .++|+++||+||| ..+.+++..+.. ....++.|-
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKT-T~l~all~~i~~---~~~~iitiE 115 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKT-TTLYSALSELNT---PEKNIITVE 115 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHH-HHHHHHHhhhCC---CCCeEEEEC
Confidence 445553 66688888776653 3 4889999999999 445556555431 234455543
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=83.46 E-value=3.5 Score=56.59 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=66.8
Q ss_pred CeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-cccccCCCCccEEEEe
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-AARGIDAANVDLVINL 340 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-LGEGLDLPaVDTVIIy 340 (2355)
.+++|.++|+..+...++.|... ++++..++|.++..++..+++.+..|.++|||+|.. +...+.+..+.+||+-
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEee
Confidence 68999999999999888877653 578889999999999999999999999999999964 4456788889998876
Q ss_pred cCCC
Q psy8497 341 EIPH 344 (2355)
Q Consensus 341 DSP~ 344 (2355)
..+.
T Consensus 581 Eahr 584 (926)
T TIGR00580 581 EEQR 584 (926)
T ss_pred cccc
Confidence 6553
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=83.24 E-value=11 Score=50.46 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=33.7
Q ss_pred ceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 162 VRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
--+||||++|.+.+......+..++..++....+|++|-+.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 348999999998766566788888888888888888887744
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=83.21 E-value=0.95 Score=49.58 Aligned_cols=43 Identities=21% Similarity=0.111 Sum_probs=28.9
Q ss_pred CCCCCcEEEECHHHHHHHHHhhccc--CcCceEEEecccchhccc
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKLKYLN--MDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdrr~Ld--LSkIdLLIVDEAHRLkN~ 176 (2355)
....++|||++|..|++-.....+. ...-.+|||||||.|.+.
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3444899999999987654443332 234468999999998753
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.20 E-value=6.5 Score=51.99 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=16.2
Q ss_pred CcEEEEccCCchHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAI 79 (2355)
+.+|+.||.|+|||.++.+.+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 347999999999997665433
|
|
| >KOG0701|consensus | Back alignment and domain information |
|---|
Probab=82.99 E-value=0.88 Score=64.40 Aligned_cols=94 Identities=21% Similarity=0.376 Sum_probs=78.9
Q ss_pred eEEEEEcccccHHHHHHHHHhcC-CccEEeeCCCC-----------HHHHHHHHHHHhCCCccEEEEecccccccCCCCc
Q psy8497 267 QCVIFSNYQLRPEVICENLANAN-FGAEYLSGAQD-----------QKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334 (2355)
Q Consensus 267 RVLVFSQTRKmAEiLADyLrErG-IKVarLHGgMS-----------qEERqeILErFRSGEIdVLVSTSALGEGLDLPaV 334 (2355)
-.|+|+.....+..+...|.... ..+..+.|.+. ...+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 56899999999988888887753 34444665443 3346788999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhhccCCCC
Q psy8497 335 DLVINLEIPHDAATYLHRMGRAGRYG 360 (2355)
Q Consensus 335 DTVIIyDSP~SPqSYIQRIGRAGRiG 360 (2355)
+.|++++.|.....|+|..||+-+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999998753
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=82.88 E-value=7.5 Score=52.71 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.3
Q ss_pred CcEEEEccCCchHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVA 78 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIA 78 (2355)
.++||.+|+|.|||.++-..
T Consensus 201 ~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred CCeEEECCCCCCHHHHHHHH
Confidence 57999999999999665533
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=82.44 E-value=11 Score=47.87 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=81.1
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-c------ccc-CCCCccE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA-A------RGI-DAANVDL 336 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL-G------EGL-DLPaVDT 336 (2355)
...+||.++++..+......|...++.+..+++.....++..++..+..+.++||++|.-. . ..+ ....+.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 3589999999999999899999999999999999999999999999999999999999632 1 122 4566778
Q ss_pred EEEecCCC------CHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 337 VINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 337 VIIyDSP~------SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
||+-..+. .......+++...+.-....++.+....+......+...+
T Consensus 131 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l 184 (470)
T TIGR00614 131 IAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQL 184 (470)
T ss_pred EEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHc
Confidence 87655552 1223333444333222223445554444444444444443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.40 E-value=8.8 Score=48.90 Aligned_cols=39 Identities=13% Similarity=0.341 Sum_probs=23.6
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
....+|||||+|.|.... ...+..++...+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 567899999999886432 234444555444444445443
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=82.29 E-value=12 Score=48.72 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=80.1
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc------cccCCCCccEEE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA------RGIDAANVDLVI 338 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG------EGLDLPaVDTVI 338 (2355)
.+.+||.++++..+....+.|...|+.+..+++.++..++..++..+..+.++||+.|.--- .-+....+.+||
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 35789999999999988899999999999999999999999999999999999999885321 123344567777
Q ss_pred EecCC----C--CHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 339 NLEIP----H--DAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 339 IyDSP----~--SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
+-... | ......++++.....-....++.+....+......+...+.
T Consensus 133 iDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 133 VDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred EeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 54443 2 12223344444322111223555554444444444544433
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=82.12 E-value=8.7 Score=52.36 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.+.||.+|+|.|||.+.-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999996654
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.63 E-value=11 Score=49.89 Aligned_cols=41 Identities=15% Similarity=0.342 Sum_probs=25.1
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
.....+|||||+|.|.... ...+..+++..+...-+| +.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEE-EEeC
Confidence 4678899999999986432 344555555544444444 4444
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=81.56 E-value=8.9 Score=45.34 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.9
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
+++|.+++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999996655
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=81.55 E-value=11 Score=51.48 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=20.6
Q ss_pred HHHHHHHHH----c--CCcEEEEccCCchHHHHHH
Q psy8497 48 QMAAFPYVL----N--GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 48 QeEALn~LL----S--GRNVILAAPTGSGKTLVAL 76 (2355)
|..-|..+. + ..++||.+|.|+|||.+.-
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 555555554 3 2579999999999995544
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=81.51 E-value=13 Score=45.33 Aligned_cols=40 Identities=3% Similarity=0.204 Sum_probs=26.7
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
..+.+||||++|.|-.. -...+.++++.-+ ...+|+++..
T Consensus 123 ~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 123 APRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 57889999999988543 3455666666655 5555555543
|
|
| >PRK07413 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=81.06 E-value=74 Score=40.63 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=78.5
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcC--CCCCeEEEEcccHH-HH-HHHHHHHHHHhcccC-CcEEEEEECCccccCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLP--VQQPQTIILAPTRE-IA-VQITDVVRSVGAHVK-NLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr--~qggRVLILVPTRA-LA-qQ~anwLREFgk~AP-gLrVVvytGGkq~rkqi 135 (2355)
++|--..|=|||.+++-.+++.+-+.. ....+|+||-=.+. -. .--...+..+....| .+.+..+--+......
T Consensus 22 i~VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~ivQFlKg~~~~~GE~~~l~~l~~~~~~~i~~~~~g~~~~~~~~- 100 (382)
T PRK07413 22 LHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRFLKGPGRAYDEDAAIEALQRGFPHLIDQVRTGRAEFFGAD- 100 (382)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEEEEEcCCCCCCcHHHHHHhccccCCCceEEEECCCCCeeeCC-
Confidence 677788899999999988887766311 11238888875443 10 000122222221111 2333221111111100
Q ss_pred CCCcEEEECHHHHHHHHH--hhcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 136 RPVQIVVGSPGRIKQMIK--LKYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
.... -........+. ...+.-..+++||+||+=..++.++ ...+..++...|...-+|++.-.++.++.+...
T Consensus 101 ~~~~---~~~~~a~~~~~~a~~~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~AD 177 (382)
T PRK07413 101 EITK---FDRQEAQRGWDIAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIAD 177 (382)
T ss_pred CCcH---HHHHHHHHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCC
Confidence 0000 00011111111 1333457889999999998887775 566777777777777888777777766665554
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=80.91 E-value=5.8 Score=46.93 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=34.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
+.-++|.|++|+|||+.++..+...+. .+.+++|+.---. ..|+.+.+..++
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~----~Ge~vlyfSlEes-~~~i~~R~~s~g 115 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMK----SGRTGVFFTLEYT-EQDVRDRLRALG 115 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHh----cCCeEEEEEEeCC-HHHHHHHHHHcC
Confidence 445899999999999766655554433 3667888864322 355566666663
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=80.72 E-value=5.1 Score=49.83 Aligned_cols=97 Identities=13% Similarity=0.237 Sum_probs=57.0
Q ss_pred HHHHHHHc-C-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEE
Q psy8497 50 AAFPYVLN-G-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVD 123 (2355)
Q Consensus 50 EALn~LLS-G-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVV 123 (2355)
..|+.++. | .-+.|.+|.|+|||..++..+..... .+..++||-.--++-. ..++.++...
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~----~G~~~~yId~E~s~~~---~~a~~lGvdl------ 112 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDP---VYAKKLGVDI------ 112 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEECCccchHH---HHHHHcCCCH------
Confidence 34566666 3 33779999999999877766655443 4678999988776643 3344442111
Q ss_pred EEECCccccCCCCCCcEEEECH---HHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 124 YFIGGTQVERPKRPVQIVVGSP---GRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 124 vytGGkq~rkqirq~DILVTTP---ErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
-++++..| +.++..+.. .+.-..+++||||=+-.|.
T Consensus 113 --------------d~lli~qp~~~Eq~l~i~~~-li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 113 --------------DNLLVSQPDTGEQALEIADT-LVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred --------------HHeEEecCCCHHHHHHHHHH-HhhcCCCCEEEEeChhhhc
Confidence 12344433 333333321 1223467899999877554
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=80.62 E-value=7.5 Score=44.09 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
.++.++. +.-++|.+++|+|||..++..+...+. .+.+++|+.... -..++.+.+..++
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~----~g~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK----NGEKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECCC-CHHHHHHHHHHcC
Confidence 4555554 345888999999999765555544443 366788887543 3456666666653
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.55 E-value=14 Score=44.98 Aligned_cols=41 Identities=10% Similarity=0.254 Sum_probs=26.5
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
...+.++||||+|+|... -...+.++++.-+....+|++|.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 356789999999988643 23455666665555555555444
|
|
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.54 E-value=7.9 Score=47.18 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHH-cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 42 VKESPIQMAAFPYVL-NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 42 ~eLRPYQeEALn~LL-SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
..+.+.|..-+..+. .++++|++++||+||| .++.+++..+- ...+++.+=-+.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKT-t~lnall~~Ip----~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKT-TLLNALLDFIP----PEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHH-HHHHHHHHhCC----chhcEEEEeccccc
Confidence 467777777665555 5688999999999999 55555554432 35566666655555
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.37 E-value=3.4 Score=53.22 Aligned_cols=39 Identities=36% Similarity=0.506 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHcCCc--EEEEccCCchHHHHHHHHHHHHHH
Q psy8497 45 SPIQMAAFPYVLNGYD--AIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 45 RPYQeEALn~LLSGRN--VILAAPTGSGKTLVALIAILerL~ 84 (2355)
.+.|.+.+..++.... ++|.+||||||| +.+.+++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKT-TTLY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKT-TTLYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHH-HHHHHHHHHhc
Confidence 7888888888887654 777999999999 55777777766
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=80.33 E-value=10 Score=51.14 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=23.5
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
.....++||||+|.|.... ...+...++.-+....+|+++
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 3577899999999876432 234444444444344444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2355 | ||||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 1e-56 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 2e-56 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 2e-56 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 3e-56 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 9e-54 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 2e-53 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 8e-52 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 6e-51 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 1e-50 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 2e-50 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 2e-49 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 2e-49 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 2e-47 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 3e-46 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 2e-45 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 8e-42 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 2e-41 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 2e-41 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 2e-41 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 7e-38 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 2e-36 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 6e-34 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 1e-33 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 1e-33 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 4e-32 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 8e-32 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 9e-32 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 4e-30 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 1e-28 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 7e-27 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 5e-26 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 1e-25 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 5e-25 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 4e-24 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 3e-23 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 2e-22 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 7e-22 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 2e-21 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 5e-21 | ||
| 1t5i_A | 172 | Crystal Structure Of The C-Terminal Domain Of Uap56 | 2e-19 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 3e-18 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 4e-18 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 7e-18 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 7e-17 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 1e-16 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 1e-16 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 6e-16 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 2e-15 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 3e-15 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 4e-15 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 6e-15 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 1e-14 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 4e-14 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 2e-13 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 6e-13 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 3e-12 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 3e-12 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 4e-12 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 3e-11 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 3e-09 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 4e-09 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 6e-09 | ||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 7e-09 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 8e-08 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 8e-08 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 8e-08 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 9e-07 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 7e-06 |
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 347 bits (892), Expect = e-107
Identities = 131/370 (35%), Positives = 197/370 (53%), Gaps = 22/370 (5%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DVL+ FE D +++ + G+ E GF K SPIQ A P + G D + ++K+GT
Sbjct: 11 QTDDVLNTKGNTFE-DFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGT 69
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ FV+ L K +K + + Q +I+ PTRE+A+Q + VVR++G H + GGT
Sbjct: 70 GKTAAFVIPTLEK-VKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-CGISCMVTTGGT 127
Query: 130 ----QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V I+VG+PGR+ + K ++ LFIMDEADK+++ F I I
Sbjct: 128 NLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQI 187
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
S LPP Q L+ SAT+ + K++ P I + L G+ Q A
Sbjct: 188 LSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYA-------- 238
Query: 246 SLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302
+V+E +K L L S+ NQ +IF N R E++ + + + + Y Q+
Sbjct: 239 ---FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQ 295
Query: 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR 362
R F++GKVR LV +DL RGID V++VIN + P A TYLHR+GR+GR+G
Sbjct: 296 ERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHL 355
Query: 363 GLVITIVSAE 372
GL I +++
Sbjct: 356 GLAINLINWN 365
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 336 bits (864), Expect = e-103
Identities = 124/358 (34%), Positives = 186/358 (51%), Gaps = 20/358 (5%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +
Sbjct: 11 RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ- 69
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPV- 138
++ Q +++ TRE+A QI+ ++ N+ V F GG E K+
Sbjct: 70 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 129
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K LN+ ++ FI+DE DK L D+ I+ P KQ+++
Sbjct: 130 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 189
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRP-LLGVKQLVALIPECKNPSLRYVDEEK-- 254
SAT S + +K+M DP+ I +D T+ L G++Q + + EK
Sbjct: 190 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD----------NEKNR 239
Query: 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
KL LL FNQ VIF R + + L NF A + Q+ RL+ FK
Sbjct: 240 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 299
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
+ RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL IT VS E
Sbjct: 300 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 357
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 332 bits (855), Expect = e-102
Identities = 127/354 (35%), Positives = 196/354 (55%), Gaps = 24/354 (6%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+++ + +G+ GF + S IQ A ++ G+D + Q++SGTGK+ F +AAL + I
Sbjct: 28 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR-IDTS 86
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR---PVQIVVGS 144
V+ PQ ++LAPTRE+A+QI VV ++ H ++ V IGGT QIVVG+
Sbjct: 87 VKAPQALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLRDAQIVVGT 145
Query: 145 PGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204
PGR+ I+ + D +++FI+DEAD+++++GF E I I++ LPP Q++++SAT +
Sbjct: 146 PGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 205
Query: 205 DNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD---EEKK---LVQ 258
D L K+M +P+ I + L G+KQ YV+ EE K L
Sbjct: 206 DVLEVTTKFMRNPVRILVKKDELTLEGIKQ-------------FYVNVEEEEYKYECLTD 252
Query: 259 LLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRI 318
L Q VIF N + + E + L N F + Q+ R + F+ G RI
Sbjct: 253 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 312
Query: 319 LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
L++TDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I V+ E
Sbjct: 313 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE 366
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-101
Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 25/355 (7%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F ++ L + +
Sbjct: 44 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC-LDIQ 102
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVG 143
V++ Q +ILAPTRE+AVQI + ++G + N+ IGGT + + +V G
Sbjct: 103 VRETQALILAPTRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRKLDYGQHVVAG 161
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP Q++++SAT
Sbjct: 162 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 221
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD---EEKK---LV 257
H+ L K+M DP+ I + L G+KQ +V EE K L
Sbjct: 222 HEILEMTNKFMTDPIRILVKRDELTLEGIKQ-------------FFVAVEREEWKFDTLC 268
Query: 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR 317
L Q VIF N + + + + E + ANF + G QK R + + F+ G R
Sbjct: 269 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 328
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V +
Sbjct: 329 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND 383
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-101
Identities = 122/356 (34%), Positives = 194/356 (54%), Gaps = 26/356 (7%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ + + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L + I+L
Sbjct: 47 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ-IELD 105
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-----PKRPVQIVV 142
++ Q ++LAPTRE+A QI VV ++G + IGGT V I+V
Sbjct: 106 LKATQALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAEVQKLQMEAPHIIV 164
Query: 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202
G+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L Q++++SAT
Sbjct: 165 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 224
Query: 203 SHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD---EEKK---L 256
D L +K+M DP+ I + L G++Q Y++ EE K L
Sbjct: 225 PSDVLEVTKKFMRDPIRILVKKEELTLEGIRQ-------------FYINVEREEWKLDTL 271
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q VIF N + + + + E + +F + G DQK R + F+ G
Sbjct: 272 CDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSS 331
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I +V+ E
Sbjct: 332 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 387
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 325 bits (835), Expect = 3e-99
Identities = 116/364 (31%), Positives = 186/364 (51%), Gaps = 35/364 (9%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIK 85
++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A L++ ++
Sbjct: 32 LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ-VE 90
Query: 86 LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGS 144
+ PQ + L+PT E+A+Q V+ +G L + Y + G ++ER K QIV+G+
Sbjct: 91 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGT 150
Query: 145 PGRIKQMI-KLKYLNMDSVRLFIMDEADK-LINTGFVEDITWIYSQLPPMKQMLVVSATY 202
PG + KLK+++ +++F++DEAD + G + I LP QML+ SAT+
Sbjct: 151 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 210
Query: 203 SHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD---EEKK-- 255
QK + DP + ++ E+ T +KQ YV ++K
Sbjct: 211 EDSVWKFAQKVVPDPNVIKLKREEETLD--TIKQ-------------YYVLCSSRDEKFQ 255
Query: 256 -LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L L Q +IF + + + L+ LSG + R A ++ F+ G
Sbjct: 256 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 315
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITI 368
K ++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +
Sbjct: 316 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 375
Query: 369 VSAE 372
V ++
Sbjct: 376 VDSK 379
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 317 bits (815), Expect = 1e-96
Identities = 97/360 (26%), Positives = 174/360 (48%), Gaps = 34/360 (9%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIK 85
+ + +G+ F K S IQ A P +L+ + I QS+SGTGK+ F + L + +
Sbjct: 12 LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTR-VN 70
Query: 86 LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSP 145
PQ I LAP+RE+A Q +VV+ +G K + + + + Q++VG+P
Sbjct: 71 PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQ-LIVPDSFEKNKQINAQVIVGTP 129
Query: 146 GRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSH 204
G + +++ K + + +++F++DEAD +++ G + + LP Q+++ SAT++
Sbjct: 130 GTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD 189
Query: 205 DNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD---EEKK---L 256
+K + + L ++ + +KQ Y+D E K L
Sbjct: 190 AVRQYAKKIVPNANTLELQTNEVNVD--AIKQ-------------LYMDCKNEADKFDVL 234
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+L +IF + V+ L + L G + R +D F+ G+
Sbjct: 235 TELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRS 294
Query: 317 RILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITIVS 370
++L+TT++ ARGID V +V+N ++P D ATY+HR+GR GR+G +G+ I+ V
Sbjct: 295 KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVH 354
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 320 bits (821), Expect = 2e-96
Identities = 118/364 (32%), Positives = 188/364 (51%), Gaps = 35/364 (9%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIK 85
++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A L++ ++
Sbjct: 99 LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ-VE 157
Query: 86 LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGS 144
+ PQ + L+PT E+A+Q V+ +G L + Y + G ++ER K QIV+G+
Sbjct: 158 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGT 217
Query: 145 PGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATY 202
PG + KLK+++ +++F++DEAD +I T G + I LP QML+ SAT+
Sbjct: 218 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277
Query: 203 SHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD---EEKK-- 255
QK + DP + ++ E+ T +KQ YV ++K
Sbjct: 278 EDSVWKFAQKVVPDPNVIKLKREEETLD--TIKQ-------------YYVLCSSRDEKFQ 322
Query: 256 -LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L L Q +IF + + + L+ LSG + R A ++ F+ G
Sbjct: 323 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITI 368
K ++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 442
Query: 369 VSAE 372
V ++
Sbjct: 443 VDSK 446
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 272 bits (698), Expect = 5e-82
Identities = 92/348 (26%), Positives = 162/348 (46%), Gaps = 28/348 (8%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ + I Q ++E GF + +Q P +L G + +V++K+G+GK+ + + L
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----- 55
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE---RPKRPVQIVVGS 144
+++++ PTRE+ Q+ +R +G + + V GG + R IVV +
Sbjct: 56 --GMKSLVVTPTRELTRQVASHIRDIGRY-MDTKVAEVYGGMPYKAQINRVRNADIVVAT 112
Query: 145 PGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204
PGR+ + +++ S + I+DEAD + GF++DI I +Q K + SAT
Sbjct: 113 PGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPE 172
Query: 205 DNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTP 264
+ ++ ++ + I V+ + D+ + VQ L +
Sbjct: 173 EIRKVVKDFITNYEEIEAC-IGLAN--VEHKFVHVK----------DDWRSKVQALRENK 219
Query: 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324
++F R L A L G Q R ++D+F+ G+ +L+TTD+
Sbjct: 220 DKGVIVFV----RTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDV 275
Query: 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
A+RG+D V+ VIN + P D TY+HR+GR GR G +G IT + E
Sbjct: 276 ASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNE 323
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 269 bits (689), Expect = 3e-80
Identities = 108/348 (31%), Positives = 182/348 (52%), Gaps = 22/348 (6%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKL 86
+ I ++ GF K + IQM P LN Y+ + Q+++G+GK+ F + + +
Sbjct: 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN-- 70
Query: 87 PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVV 142
+ IIL PTRE+A+Q+ D + S+ + KNL + GG Q++ K IVV
Sbjct: 71 ENNGIEAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALKNA-NIVV 128
Query: 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202
G+PGRI I LN+ +V+ FI+DEAD+++N GF++D+ I + K++L+ SAT
Sbjct: 129 GTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATM 188
Query: 203 SHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQ 262
+ L +KYM D I+ + ++Q + E + + L +LL
Sbjct: 189 PREILNLAKKYMGDYSFIKAKINAN----IEQSYVEVNE--------NERFEALCRLLKN 236
Query: 263 TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322
F ++F + + + L + F A + G Q R + FK+ K+RIL+ T
Sbjct: 237 KEF-YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT 295
Query: 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
D+ +RGID +++ VIN +P + +Y+HR+GR GR G +G I+I++
Sbjct: 296 DVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 343
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 4e-74
Identities = 115/570 (20%), Positives = 214/570 (37%), Gaps = 68/570 (11%)
Query: 18 IDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVF 75
+D L E + +++K I + + F +P+Q +L+ +D I ++K+GTGK+ F
Sbjct: 19 LDSLLE-EGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAF 77
Query: 76 VVAALNKLIKL---PVQQPQTIILAPTREIAVQITDVVRSVGAH---VKNLHVDYFIGGT 129
++ LI + +I+APTR++A+QI V+ + +K +GGT
Sbjct: 78 LIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Query: 130 QVER-----PKRPVQIVVGSPGRIKQMIKLKYLNM-DSVRLFIMDEADKLINTGFVEDIT 183
K IV+ +PGR+ +++ V ++DEAD+L+ GF +D+
Sbjct: 138 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLE 197
Query: 184 WIYSQLP-------PMKQMLVVSATYSHD--NLATLQKYMVDPLLIR----PEDATRPLL 230
I L + L+ SAT LA M + ++
Sbjct: 198 TISGILNEKNSKSADNIKTLLFSATLDDKVQKLA--NNIMNKKECLFLDTVDKNEPEAHE 255
Query: 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN- 289
+ Q V + + N V+ KK Q+ + + +IF+ +C L N
Sbjct: 256 RIDQSVVISEKFANSIFAAVEHIKK--QIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK 313
Query: 290 --FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAA 347
G Q R + + FK+ + ILV TD+ ARG+D NV V+ + +P + A
Sbjct: 314 KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 373
Query: 348 TYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFN---------------- 391
Y+HR+GR R G G + + + L L N+ A
Sbjct: 374 NYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEA 433
Query: 392 VGLVPDNLTGDQINWTQRVQTLLAKPLDQ------------AQEREDVEQTAEESSKVEN 439
V P++++ I+ ++ + + D + S + +
Sbjct: 434 VTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLD 493
Query: 440 TKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKT 499
L +P + + N +++S+ G ++N + R R + +
Sbjct: 494 KLGLSRSPIGKAMFEIRDYSSRDGNNKSYDYDDDSEISFRG--NKNYNNRSQNRDYDDEP 551
Query: 500 QEKCVKGAGEDENGDRKASKDEQKIDGANS 529
+ + R K+ +N
Sbjct: 552 FR---RSNNNRRSFSRSNDKNNYSSRNSNI 578
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 253 bits (647), Expect = 2e-72
Identities = 95/382 (24%), Positives = 163/382 (42%), Gaps = 35/382 (9%)
Query: 19 DVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFV 76
D L E + +++K I + + F +P+Q +L+ +D I ++K+GTGK+ F+
Sbjct: 71 DSLLE-EGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFL 129
Query: 77 VAALNKLIKL---PVQQPQTIILAPTREIAVQITDVVRSVGAH---VKNLHVDYFIGGTQ 130
+ LI + +I+APTR++A+QI V+ + +K +GGT
Sbjct: 130 IPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTD 189
Query: 131 VER-----PKRPVQIVVGSPGRIKQMIKLKYLNM-DSVRLFIMDEADKLINTGFVEDITW 184
K IV+ +PGR+ +++ V ++DEAD+L+ GF +D+
Sbjct: 190 FRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 249
Query: 185 IYSQLP-------PMKQMLVVSATYSHD--NLATLQKYMVDPLLIR----PEDATRPLLG 231
I L + L+ SAT LA M + ++
Sbjct: 250 ISGILNEKNSKSADNIKTLLFSATLDDKVQKLA--NNIMNKKECLFLDTVDKNEPEAHER 307
Query: 232 VKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN-- 289
+ Q V + + N V+ KK Q+ + + +IF+ +C L N
Sbjct: 308 IDQSVVISEKFANSIFAAVEHIKK--QIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK 365
Query: 290 -FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAAT 348
G Q R + + FK+ + ILV TD+ ARG+D NV V+ + +P + A
Sbjct: 366 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELAN 425
Query: 349 YLHRMGRAGRYGTRGLVITIVS 370
Y+HR+GR R G G + +
Sbjct: 426 YIHRIGRTARSGKEGSSVLFIC 447
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 4e-69
Identities = 108/216 (50%), Positives = 135/216 (62%), Gaps = 6/216 (2%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
RT DVL FE +L+ +P+ +GL+ GF + SP+Q+ A P G D IVQ+KSGT
Sbjct: 14 RTGDVLLAEPADFE-SLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGT 72
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ VF AL+ + L Q +ILAPTREIAVQI V+ ++G ++ L FIGGT
Sbjct: 73 GKTCVFSTIALDS-LVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGT 131
Query: 130 QVERPKR---PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWI 185
+ + K I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G F E I WI
Sbjct: 132 PLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWI 191
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR 221
YS LP KQML VSATY L KYM DP +R
Sbjct: 192 YSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 2e-64
Identities = 94/357 (26%), Positives = 180/357 (50%), Gaps = 30/357 (8%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI----KLP 87
I + ++G+ +PIQ + P + +G D + +++G+GK+ F++ L+KL+ +L
Sbjct: 67 IIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELE 126
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVG 143
+ +PQ +I++PTRE+A+QI + R L + GGT Q E R +V+
Sbjct: 127 LGRPQVVIVSPTRELAIQIFNEARKFA-FESYLKIGIVYGGTSFRHQNECITRGCHVVIA 185
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ--LPPMKQMLVVSAT 201
+PGR+ + ++ + R ++DEAD++++ GF ED+ I + + P Q L+ SAT
Sbjct: 186 TPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSAT 245
Query: 202 YSHD--NLATLQKYMVDPLLI---RPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ + +A +++ + + + A VKQ + + + + KL
Sbjct: 246 FPEEIQRMA--GEFLKNYVFVAIGIVGGACS---DVKQTIYEVNK--------YAKRSKL 292
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+++LS+ + ++F + + + L+ F + G + Q R +L FK G +
Sbjct: 293 IEILSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 351
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373
++L+ T +A+RG+D N+ VIN ++P Y+HR+GR GR G G + E
Sbjct: 352 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 9e-63
Identities = 74/197 (37%), Positives = 122/197 (61%), Gaps = 5/197 (2%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+++ + +G+ GF + S IQ A ++ G+D + Q++SGTGK+ F +AAL + I
Sbjct: 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR-IDTS 79
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP---VQIVVGS 144
V+ PQ ++LAPTRE+A+QI VV ++ H ++ V IGGT QIVVG+
Sbjct: 80 VKAPQALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLRDAQIVVGT 138
Query: 145 PGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204
PGR+ I+ + D +++FI+DEAD+++++GF E I I++ LPP Q++++SAT +
Sbjct: 139 PGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 198
Query: 205 DNLATLQKYMVDPLLIR 221
D L K+M +P+ I
Sbjct: 199 DVLEVTTKFMRNPVRIL 215
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 9e-63
Identities = 68/199 (34%), Positives = 117/199 (58%), Gaps = 7/199 (3%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+++ + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L + +++
Sbjct: 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ-LEIE 95
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-----PKRPVQIVV 142
++ Q ++LAPTRE+A QI V+ ++G + IGGT V IVV
Sbjct: 96 FKETQALVLAPTRELAQQIQKVILALGDY-MGATCHACIGGTNVRNEMQKLQAEAPHIVV 154
Query: 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202
G+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L Q++++SAT
Sbjct: 155 GTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214
Query: 203 SHDNLATLQKYMVDPLLIR 221
D L +K+M DP+ I
Sbjct: 215 PTDVLEVTKKFMRDPIRIL 233
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 3e-62
Identities = 62/197 (31%), Positives = 109/197 (55%), Gaps = 5/197 (2%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+++ + G+ E G+ K SPIQ + P L+G D + ++K+GTGKS +++ L + + L
Sbjct: 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER-LDLK 68
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVG 143
Q +++ PTRE+A+Q++ + V H+ V GGT + R V +V+
Sbjct: 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 128
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
+PGRI +IK +D V++ ++DEADKL++ FV+ + I LP +Q+L+ SAT+
Sbjct: 129 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188
Query: 204 HDNLATLQKYMVDPLLI 220
+ ++ P I
Sbjct: 189 LSVQKFMNSHLEKPYEI 205
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 9e-61
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 7/204 (3%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +
Sbjct: 17 RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ- 75
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPV- 138
++ Q +++ TRE+A QI+ ++ N+ V F GG E K+
Sbjct: 76 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 135
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K LN+ ++ FI+DE DK L D+ I+ P KQ+++
Sbjct: 136 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 195
Query: 198 VSATYSHDNLATLQKYMVDPLLIR 221
SAT S + +K+M DP+ I
Sbjct: 196 FSATLSKEIRPVCRKFMQDPMEIF 219
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 3e-59
Identities = 98/386 (25%), Positives = 183/386 (47%), Gaps = 55/386 (14%)
Query: 30 KPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV- 88
+ I ++ + + +P+Q A P + D + +++G+GK+ F++ L+++
Sbjct: 24 EIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83
Query: 89 ----------------QQPQTIILAPTREIAVQITDVVR--SVGAHVKNLHVDYFIGGT- 129
Q P +++LAPTRE+AVQI + R S + V+ V GG
Sbjct: 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV---YGGAD 140
Query: 130 ---QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIY 186
Q+ +R ++V +PGR+ M++ + +D + ++DEAD++++ GF I I
Sbjct: 141 IGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV 200
Query: 187 SQL--PP--MKQMLVVSATYSHD--NLATLQKYMVDPLLI---RPEDATRPLLGVKQLVA 237
Q PP ++ ++ SAT+ + LA + ++ + + + R + + Q V
Sbjct: 201 EQDTMPPKGVRHTMMFSATFPKEIQMLA--RDFLDEYIFLAVGRVGSTS---ENITQKVV 255
Query: 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCV-IFSNYQLRPEVICENLANANFGAEYLS 296
+ E D+ L+ LL+ T + +F + + + + L + + +
Sbjct: 256 WVEE--------SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIH 307
Query: 297 GAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRA 356
G + Q+ R +L F+ GK ILV T +AARG+D +NV VIN ++P D Y+HR+GR
Sbjct: 308 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 367
Query: 357 GRYGTRGLVITIVS------AESLVK 376
GR G GL + + + L+
Sbjct: 368 GRVGNLGLATSFFNERNINITKDLLD 393
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 5e-59
Identities = 69/199 (34%), Positives = 112/199 (56%), Gaps = 6/199 (3%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIK 85
++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A L++ ++
Sbjct: 99 LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ-VE 157
Query: 86 LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGS 144
+ PQ + L+PT E+A+Q V+ +G L + Y + G ++ER K QIV+G+
Sbjct: 158 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGT 217
Query: 145 PGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATY 202
PG + KLK+++ +++F++DEAD +I T G + I LP QML+ SAT+
Sbjct: 218 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277
Query: 203 SHDNLATLQKYMVDPLLIR 221
QK + DP +I+
Sbjct: 278 EDSVWKFAQKVVPDPNVIK 296
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 6e-56
Identities = 66/437 (15%), Positives = 142/437 (32%), Gaps = 60/437 (13%)
Query: 30 KPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ 89
+ R ++ + Q ++ G + + +G GK+ ++ AL K
Sbjct: 8 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---- 63
Query: 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKR----PVQIV 141
++ ++ PT + Q + ++ + + + F + + K I+
Sbjct: 64 GKKSALVFPTVTLVKQTLERLQKLADE--KVKIFGFYSSMKKEEKEKFEKSFEEDDYHIL 121
Query: 142 VGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201
V S + + L+ +D+ D ++ D + +P S
Sbjct: 122 VFSTQFV--SKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTI 179
Query: 202 YSHDNLATLQKYMVDPLLI-----RPEDATRPLLGVKQLVALIPECKNPSLR-------Y 249
+ L++ +P L + L+ R
Sbjct: 180 KQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF--RDLLNFTVGRLVSVARNITHVRIS 237
Query: 250 VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLD 309
++KLV+LL + +IF+ + + + E L F ++ + +
Sbjct: 238 SRSKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEK-----NFE 291
Query: 310 SFKRGKVRILVTTD----LAARGIDAAN-VDLVINLEIPH--DAATYLHRMGRAGRYGTR 362
FK GK+ IL+ RG+D + VI P D TY+ GR+ R
Sbjct: 292 DFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNG 351
Query: 363 GL--VITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQ 420
L ++++ E F SL + L + + + + + +
Sbjct: 352 VLVKGVSVIFEEDEEIFESLKTRLLLI--------------AEEEIIEEAEANWKELVHE 397
Query: 421 AQE-REDVEQTAEESSK 436
+E R E+ ++S+
Sbjct: 398 VEESRRRSERELTDTSR 414
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 7e-56
Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 8/201 (3%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ I + ++ F K + IQ P L G + QS++GTGK+ +++ + K IK
Sbjct: 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK-IKPE 69
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHV---KNLHVDYFIGGT----QVERPKRPVQI 140
+ Q +I APTRE+A QI + + + IGGT +E+ I
Sbjct: 70 RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHI 129
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200
V+G+PGRI I+ + L++ + + ++DEAD +++ GF+ D+ I +++P QMLV SA
Sbjct: 130 VIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSA 189
Query: 201 TYSHDNLATLQKYMVDPLLIR 221
T L+KYM +P +
Sbjct: 190 TIPEKLKPFLKKYMENPTFVH 210
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 3e-50
Identities = 65/200 (32%), Positives = 110/200 (55%), Gaps = 9/200 (4%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL--IK 85
++ I + L G +PIQ AA P L G D I Q+++GTGK++ F + +L +
Sbjct: 8 LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ 67
Query: 86 LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIV 141
++P+ ++L PTRE+A+Q+ + +V H+K + V GGT Q E R V
Sbjct: 68 ERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAV---YGGTGYGKQKEALLRGADAV 124
Query: 142 VGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201
V +PGR ++ L++ V + ++DEAD++++ GF E++ + S PP +Q L+ SAT
Sbjct: 125 VATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSAT 184
Query: 202 YSHDNLATLQKYMVDPLLIR 221
++YM +P+LI
Sbjct: 185 LPSWAKRLAERYMKNPVLIN 204
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-42
Identities = 53/199 (26%), Positives = 106/199 (53%), Gaps = 9/199 (4%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ + + + G+ K + IQ+ A P L G D I +++G+GK+ F + LN L++ P
Sbjct: 50 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 109
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG----TQVERPKRPVQIVVG 143
Q+ ++L PTRE+A QI++ ++G+ + + +GG +Q + I++
Sbjct: 110 -QRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIA 167
Query: 144 SPGR-IKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202
+PGR I + K N+ +++ +MDEAD+++N F ++ I +P ++ + SAT
Sbjct: 168 TPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 227
Query: 203 SHDNLATLQK-YMVDPLLI 220
+ + LQ+ + +P+
Sbjct: 228 T-KKVQKLQRAALKNPVKC 245
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 3e-41
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Query: 249 YVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
+ + +K L LL FNQ VIF R + + L NF A + Q+ RL
Sbjct: 12 KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL 71
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ FK + RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL
Sbjct: 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 131
Query: 366 ITIVSAES 373
IT VS E+
Sbjct: 132 ITFVSDEN 139
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 3e-41
Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 12/203 (5%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL- 86
+ K +GLQE + + IQ L G D + +K+G+GK++ F+V L L +L
Sbjct: 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ 91
Query: 87 --PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG----TQVERPKRPVQI 140
+I++PTRE+A Q +V+R VG + + IGG + ER I
Sbjct: 92 WTSTDGLGVLIISPTRELAYQTFEVLRKVGKN-HDFSAGLIIGGKDLKHEAERINNI-NI 149
Query: 141 VVGSPGRIKQ-MIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199
+V +PGR+ Q M + + +++ ++DEAD++++ GF + + + LP +Q L+ S
Sbjct: 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFS 209
Query: 200 ATYSHDNLATLQK-YMVDPLLIR 221
AT + ++ L + + +P +
Sbjct: 210 ATQT-KSVKDLARLSLKNPEYVW 231
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 15/210 (7%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F++ + + + G +K +PIQ A+P +L G D IV +++GTGK++ +++
Sbjct: 21 FKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFI 80
Query: 82 KLIKLPVQQ-----PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVE 132
L P+ + P ++L PTRE+A+ + K L GG Q+E
Sbjct: 81 HLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIE 138
Query: 133 RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ V I++ +PGR+ + +N+ S+ ++DEADK+++ F I I + P
Sbjct: 139 DISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPD 198
Query: 193 KQMLVVSATYSHD--NLATLQKYMVDPLLI 220
+Q ++ SAT+ LA Y+ DP+++
Sbjct: 199 RQTVMTSATWPDTVRQLA--LSYLKDPMIV 226
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 2e-37
Identities = 55/208 (26%), Positives = 110/208 (52%), Gaps = 16/208 (7%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
L+ + + ++E GF + IQ + +L G D + +K+G+GK++ F++ A+ ++
Sbjct: 58 CNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIV 117
Query: 85 KLPVQQPQT---IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG----TQVERPKRP 137
KL +IL+PTRE+A+Q V++ + H +GG + ++
Sbjct: 118 KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNG 176
Query: 138 VQIVVGSPGRIKQ-MIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQML 196
+ I+V +PGR+ M +++ ++DEAD++++ GF E++ I LP +Q +
Sbjct: 177 INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 236
Query: 197 VVSATYSH--DNLA--TLQKYMVDPLLI 220
+ SAT + ++LA +L+K +PL +
Sbjct: 237 LFSATQTRKVEDLARISLKK---EPLYV 261
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 3e-37
Identities = 46/206 (22%), Positives = 97/206 (47%), Gaps = 16/206 (7%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
I + Q + + GF +PIQM A P +L+G + + + +G+GK++ F + L +L +
Sbjct: 36 INSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA 95
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPVQIVV 142
+ + +I++PTRE+A QI + + + + + I+V
Sbjct: 96 NKGFRALIISPTRELASQIHRELIKISEG-TGFRIHMIHKAAVAAKKFGPKSSKKFDILV 154
Query: 143 GSPGRIKQMIKLK--YLNMDSVRLFIMDEADKL---INTGFVEDITWIYSQL-PPMKQML 196
+P R+ ++K +++ SV ++DE+DKL TGF + + I+ +
Sbjct: 155 TTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRA 214
Query: 197 VVSATYSHD--NLATLQKYMVDPLLI 220
+ SAT+++D + + + + +
Sbjct: 215 MFSATFAYDVEQWC--KLNLDNVISV 238
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 3e-36
Identities = 49/130 (37%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 249 YVD---EEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302
YV+ EE K L L Q VIF N + + E + L N F + Q+
Sbjct: 8 YVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQ 67
Query: 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR 362
R + F+ G RIL++TDL ARGID V LVIN ++P + Y+HR+GR GR+G +
Sbjct: 68 ERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRK 127
Query: 363 GLVITIVSAE 372
G+ I V+ E
Sbjct: 128 GVAINFVTNE 137
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-35
Identities = 52/200 (26%), Positives = 99/200 (49%), Gaps = 13/200 (6%)
Query: 31 PIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90
+ + F + + IQ +P L+G D + +++G+GK++ +++ A+ + P +
Sbjct: 39 NVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 98
Query: 91 ----PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVV 142
P ++LAPTRE+A Q+ V L GG Q+ +R V+I +
Sbjct: 99 RGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICI 157
Query: 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202
+PGR+ ++ N+ ++DEAD++++ GF I I Q+ P +Q L+ SAT+
Sbjct: 158 ATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217
Query: 203 SHD--NLATLQKYMVDPLLI 220
+ LA + ++ D + I
Sbjct: 218 PKEVRQLA--EDFLKDYIHI 235
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 3e-35
Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Query: 249 YVDEEKK----LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
D+ + LV LL Q + ++F + R + L A YL G Q R
Sbjct: 10 RADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 69
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
++ G+V +LV TD+AARGID +V V N ++P TYLHR+GR R G +G
Sbjct: 70 NEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 129
Query: 365 VITIVSAE 372
I++V A
Sbjct: 130 AISLVEAH 137
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 4e-35
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 22/218 (10%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F+ L IR + + + +PIQ A P +L D + +++G+GK+ F++ +N
Sbjct: 25 FDELKLDP-TIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 83
Query: 82 KLIKLPVQQ--------PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT---- 129
L+ + Q P+ +ILAPTRE+A+QI + + L GG
Sbjct: 84 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHS 142
Query: 130 QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
Q+ + ++V +PGR+ I+ ++++ + ++DEAD++++ GF I I +
Sbjct: 143 QIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES 202
Query: 190 PPMK----QMLVVSATYSHD--NLATLQKYMVDPLLIR 221
Q L+ SAT+ + LA ++ + + +
Sbjct: 203 NMPSGINRQTLMFSATFPKEIQKLA--ADFLYNYIFMT 238
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-35
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 250 VDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
V EE K L +L + C+IF + + + L + + + + G Q+ R
Sbjct: 17 VREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFD 76
Query: 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI 366
++ FKRG+ R LV TD+AARGID N+ LVIN ++P + +Y+HR GR GR G +G I
Sbjct: 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI 136
Query: 367 TIVSAE 372
+ V+A
Sbjct: 137 SFVTAF 142
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-33
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 251 DEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
+ K L + Q +IF + + + + LSG + R +
Sbjct: 17 HRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASI 76
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGT 361
+ F+ GK ++L+TT++ ARGID V +V+N ++P D TYLHR+GR GR+G
Sbjct: 77 IQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGK 136
Query: 362 RGLVITIVSAESL 374
+GL ++ + L
Sbjct: 137 KGLAFNMIEVDEL 149
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 250 VDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
+ L LL ++ ++F+ + E I + L A+ L G Q R
Sbjct: 13 APVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERER 72
Query: 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI 366
L +F++G+VR+LV TD+AARG+D VDLV++ +P A Y HR GR GR G G V+
Sbjct: 73 VLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVV 132
Query: 367 TIVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQE--- 423
+ +L + F P T +++ + + LLA+ ++
Sbjct: 133 LLYGPRERRDVEALERAVGRR--FKRVNPP---TPEEVL-EAKWRHLLARLARVPEKDYR 186
Query: 424 --REDVEQTAEESSK 436
++ + E
Sbjct: 187 LYQDFAGRLFAEGRV 201
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 22/168 (13%)
Query: 210 LQKYMVDPL--LIRPEDATRPLLG-----VKQLVALIPECKNPSLRYVDEEKK---LVQL 259
+ + + E+ +G V Q V YV EE K L++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMGAASLDVIQEV-----------EYVKEEAKMVYLLEC 49
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
L +TP +IF+ + + I E L A + G +DQ+ R ++++F+ GK +L
Sbjct: 50 LQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVL 108
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
V TD+A++G+D + VIN ++P + Y+HR+GR G G G+ T
Sbjct: 109 VATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATT 156
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 41/115 (35%), Positives = 62/115 (53%)
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L LL ++ ++F+ + E I + L A+ L G Q R + +F++G+
Sbjct: 19 LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE 78
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
VR+LV TD+AARG+D VDLV++ +P A Y HR GR GR G G V+ +
Sbjct: 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYG 133
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 249 YVDEEKK---LVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
+V+E K L+ LL+ T + ++F + + + + L + + + G + Q+ R
Sbjct: 26 WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 85
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
+L F+ GK ILV T +AARG+D +NV VIN ++P D Y+HR+GR GR G GL
Sbjct: 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 145
Query: 365 VIT 367
+
Sbjct: 146 ATS 148
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 3e-15
Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 15/193 (7%)
Query: 192 MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD 251
+ + + T L K + + A++ + K++ I +D
Sbjct: 282 LHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLD 341
Query: 252 EEK--KLVQLLSQ----TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGA------- 298
K KL +++ + ++ ++F+NY+ + I L A+ G
Sbjct: 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 401
Query: 299 -QDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG 357
Q+ + LD F RG+ +LV T + G+D VDLV+ E A + R GR G
Sbjct: 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTG 461
Query: 358 RYGTRGLVITIVS 370
R+ G VI +++
Sbjct: 462 RHMP-GRVIILMA 473
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 1e-11
Identities = 26/169 (15%), Positives = 70/169 (41%), Gaps = 8/169 (4%)
Query: 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105
Q + + ++ +G GK+++ ++ A +L K + ++LAPT+ + +Q
Sbjct: 12 IYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGK---VLMLAPTKPLVLQ 67
Query: 106 ITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV---QIVVGSPGRIKQMIKLKYLNMDSV 162
+ R + ++ + G E + +++V +P I+ + ++++ V
Sbjct: 68 HAESFRRL-FNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDV 126
Query: 163 RLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211
L + DEA + + I Y + ++ ++A+ ++
Sbjct: 127 SLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIME 175
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 4e-11
Identities = 66/431 (15%), Positives = 116/431 (26%), Gaps = 93/431 (21%)
Query: 20 VLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGY-DAIVQSKSGTGKSIVFVVA 78
V + E ++ P V + A + + +G+GKS A
Sbjct: 193 VCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAA 252
Query: 79 ALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVERPKRP 137
+ K ++L P+ GA++ K +D I T V
Sbjct: 253 YAAQGYK-------VLVLNPSVAAT-------LGFGAYMSKAHGIDPNI-RTGVRTITTG 297
Query: 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
+ + G+ + + + + I DE ++ + I + Q LV
Sbjct: 298 APVTYSTYGK---FLADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLV 353
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKN----PSLRYVDEE 253
V AT + T+ ++ + P G + I ++ S + DE
Sbjct: 354 VLATATPPGSVTVPHPNIEE-VALSNTGEIPFYGKAIPIEAIRGGRHLIFCHSKKKCDE- 411
Query: 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR 313
+ L+ A D
Sbjct: 412 ---------------------------LAAKLSGLGINAVAYYRGLDVSV-------IPT 437
Query: 314 GKVRILVTTDLAARG--IDAANVDLVI---------------------NLEIPHDAATYL 350
++V TD G D D VI +P DA +
Sbjct: 438 IGDVVVVATDALMTGYTGD---FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRS 494
Query: 351 HRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRV 410
R GR GR G+ + E + + L ++ G LT + R+
Sbjct: 495 QRRGRTGRGRR-GIYRFVTPGE---RPSGMFDSSVLCECYDAGCAWYELT--PAETSVRL 548
Query: 411 QTLLAKPLDQA 421
+ L P
Sbjct: 549 RAYLNTPGLPV 559
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 1e-10
Identities = 74/465 (15%), Positives = 161/465 (34%), Gaps = 79/465 (16%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90
I+ L+E G P Q A + G +A++ + +GK+++ +A +++++ Q
Sbjct: 12 IKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT---QG 68
Query: 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP-VQIVVGSPGRIK 149
+ + + P + +A + + L V G + I++ + +
Sbjct: 69 GKAVYIVPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDEWLGKYDIIIATAEKFD 126
Query: 150 QMIKLKYLNMDSVRLFIMDE----ADKLINTGFV-EDITWIYSQLPPMKQMLVVSATYS- 203
+++ + V++ + DE + + G E I + + Q++ +SAT
Sbjct: 127 SLLRHGSSWIKDVKILVADEIHLIGSR--DRGATLEVIL---AHMLGKAQIIGLSATIGN 181
Query: 204 HDNLAT---------------LQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSL 247
+ LA L++ + + ED + ++LV K +L
Sbjct: 182 PEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGAL 241
Query: 248 ------RYVDEE-----KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA-NFGAEYL 295
R + KK+ LL++ ++ L E LA A G +
Sbjct: 242 IFVNMRRKAERVALELSKKVKSLLTKPEIRALNELAD-SLEENPTNEKLAKAIRGGVAFH 300
Query: 296 SGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI--NLEI-------PHDA 346
+ R+ ++F++G ++ +V T + GI+ VI ++
Sbjct: 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTP-AFRVIIRDIWRYSDFGMERIPI 359
Query: 347 ATYLHRMGRAGR--YGTRGLVITIVSAESLVKFH-------------SLMGEINLDHAFN 391
+GRAGR Y G I + +++ + L E NL
Sbjct: 360 IEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVL 419
Query: 392 VGLVPDNLT--GDQINWTQRVQTLLAKPLDQAQEREDVEQTAEES 434
+ + + + + T A Q ++ +E+
Sbjct: 420 ALIATFGYSTVEEILKFISN--TFYAY---QRKDTYSLEEKIRNI 459
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-10
Identities = 68/391 (17%), Positives = 138/391 (35%), Gaps = 52/391 (13%)
Query: 30 KPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ 89
L+E G + P Q A V +G + ++ + GK+++ +A + + IK
Sbjct: 12 SYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---- 67
Query: 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK-RPVQIVVGSPGRI 148
+++ + P R +A + + + L + G + I+V + +
Sbjct: 68 GGKSLYVVPLRALAGEKYESFKKWEKI--GLRIGISTGDYESRDEHLGDCDIIVTTSEKA 125
Query: 149 KQMIKLKYLNMDSVRLFIMDE----ADKLINTGFV-EDITWIYSQLPPMKQMLVVSATYS 203
+I+ + + +V ++DE + G E + ++ +++ +SAT
Sbjct: 126 DSLIRNRASWIKAVSCLVVDEIHLLDSE--KRGATLEILVTKMRRMNKALRVIGLSATAP 183
Query: 204 -HDNLAT---------------LQKYMVDPLLIRPEDATRPLLGVKQLVALIPEC---KN 244
+A L + ++ + D + L+ EC
Sbjct: 184 NVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENG 243
Query: 245 PSL------RYVDEE-KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA-NFGAEYLS 296
L R ++ KL + ++ N+ + + + + LA GA +
Sbjct: 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303
Query: 297 GAQDQKARLASLDSFKRGKVRILVTTDLAARGID--AANVDLVINLEI------PHDAAT 348
R D+F+RG ++++V T A G++ A V +V +L +
Sbjct: 304 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRV-IVRSLYRFDGYSKRIKVSE 362
Query: 349 YLHRMGRAGR--YGTRGLVITIVSAESLVKF 377
Y GRAGR RG I IV
Sbjct: 363 YKQMAGRAGRPGMDERGEAIIIVGKRDREIA 393
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-10
Identities = 64/441 (14%), Positives = 121/441 (27%), Gaps = 150/441 (34%)
Query: 11 TKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTG 70
K +LS ++ + +++ K G L + ++
Sbjct: 42 PKSILSKEEI---DHIIMSKDAVSGT-----------------LRL--FWTLLSK----Q 75
Query: 71 KSIV--FVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128
+ +V FV L K + +T P+ + I R + + Y
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYN--- 130
Query: 129 TQVERPK------------RPVQIVV--GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174
V R + RP + V+ G G K + +D +
Sbjct: 131 --VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-----VALDVCL-------SYKV 176
Query: 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHDN-----LATLQK--YMVDPLLIRPEDATR 227
I W+ + N L LQK Y +DP D +
Sbjct: 177 QCKMDFKIFWL---------------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS- 220
Query: 228 PLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN 287
N LR + +L +LL P+ C++ + N+ N
Sbjct: 221 ---------------SNIKLRIHSIQAELRRLLKSKPYENCLL----------VLLNVQN 255
Query: 288 ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAA 347
A + ++F +IL+TT R D + AA
Sbjct: 256 AK-----------------AWNAFN-LSCKILLTT----R--FKQVTDFL-------SAA 284
Query: 348 TYLHRMGRAGRYG-----TRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGD 402
T H + L++ + + L E+ + + ++ +++
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLD----CRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 403 QINWTQRVQTLLAKPLDQAQE 423
W + + L E
Sbjct: 341 LATW-DNWKHVNCDKLTTIIE 360
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 3e-08
Identities = 63/494 (12%), Positives = 123/494 (24%), Gaps = 125/494 (25%)
Query: 693 DTIPNDETSNDNKLTPV-------DFD--YINDFVNQ--TPSETGDRPLVHGPNSVPKID 741
D + + V +FD + D + E ++ ++V
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTL 65
Query: 742 TPSDDYLVANMKACLTNDSVRVQVLMEKLDHVDASVLADWILNKHNNVAALFRSEDQSNS 801
L + + + VQ +E++ ++ L I + + + R +
Sbjct: 66 -----RLFWTL--LSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 802 VRIGDNDGTGNRSITRSKQNSQSGDHTDLKD---SNRPNANT----DPSTGKNV---KDI 851
DN +++R + + L+ RP N +GK
Sbjct: 118 RLYNDNQVFAKYNVSRLQP------YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 852 QSREIKSYASLSMF----SPCQTTLNKFDTQYNSSDYQSDSKPYGDRTKRRSRPRKNKEN 907
S +++ +F C + + YQ D + R+ S + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQID-PNWTSRSDHSSNIKLRIHS 229
Query: 908 T-DILNTLGQDKTSAHGRTPSGGHRTPERRRS----DGVRN-------D--------TRD 947
L L + K V+N + TR
Sbjct: 230 IQAELRRLLKSK---------------PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 948 ERNGAYTGDKGGRNRGHSVNSRKDHSFAGETPR-SKGGFDSYLDQSMDSFLDKSCREESF 1006
++ T H DH TP K YLD +
Sbjct: 275 KQV---TDFLSAATTTH---ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 1007 L------KRSHMPKR----DLVVYDDAFDMFSPAANNLDEYEI-DYVEQ----PVDEK-- 1049
V D + + N L+ E ++ P
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 1050 ----------KSRRELSQKMDSDRYRPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKPG 1099
+ ++ ++ + P S S+ + ++L+ KL
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE---STISIPS---IYLELKVKL--- 439
Query: 1100 HRLQRNSKKRHSKI 1113
N H I
Sbjct: 440 ----ENEYALHRSI 449
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 3e-04
Identities = 51/271 (18%), Positives = 86/271 (31%), Gaps = 71/271 (26%)
Query: 1278 SYHDEHAVFLPNSSSEDDCDGLSHGDEANG-LASEDADEY--SGSSLNSS--CIDLNCDH 1332
Y D +VF DC + D L+ E+ D S +++ +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 1333 LEN---DFSEEE------------AEEYLEETYVTDEYHECDDERCSHDDCGDLDY---- 1373
E F EE E + + +T Y E D R +D+ Y
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSR 133
Query: 1374 -QQYEKLR-GRQANTPTKTIGDTQGKRG-GRVNTRSNHVNSEDKS-------RVHTSEDR 1423
Q Y KLR P K + G G G K+ + + +
Sbjct: 134 LQPYLKLRQALLELRPAKNVL-IDGVLGSG-------------KTWVALDVCLSYKVQCK 179
Query: 1424 LNFKG-WIREMELYNVSTNVNVSDDDGLDESYNMIKTPTPRKRNGASGESSVEREDVGGG 1482
++FK W+ N+ N N S + L+ ++ P + + S+++
Sbjct: 180 MDFKIFWL------NLK-NCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 1483 KSLRNLL----LRRALMNKQNEV--NLWHRE 1507
LR LL L+ V N+ + +
Sbjct: 232 AELRRLLKSKPYENCLL-----VLLNVQNAK 257
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 54/395 (13%), Positives = 122/395 (30%), Gaps = 90/395 (22%)
Query: 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105
Q A L + +G+GK+ V + A + P T+I+ PT +A Q
Sbjct: 96 DYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI--NELSTP-----TLIVVPTLALAEQ 148
Query: 106 ITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLF 165
+ + G +V F G + +P + V + + L
Sbjct: 149 WKERLGIFG----EEYVGEFSGRIKELKP-----LTVSTYDSAYVNAEKLGNRFM---LL 196
Query: 166 IMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT-------------------YSHDN 206
I DE L +V+ + L ++AT +
Sbjct: 197 IFDEVHHLPAESYVQIAQ-----MSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFP 251
Query: 207 LATLQKYMVDPLLIR-----PEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ--- 258
+ K++ + R ED +++ + +LR ++ K+V
Sbjct: 252 DSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASG 311
Query: 259 -----------------LLSQTPFNQCVIFSNYQLRPE----VICENLANAN-----FGA 292
+ + + + + + + F
Sbjct: 312 YDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLI 371
Query: 293 EYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAAT---- 348
++ ++ R L+ F+ G+ R +V++ + GID + ++ + + + +
Sbjct: 372 PAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIM-----SGSGSAR 426
Query: 349 -YLHRMGRAGRY---GTRGLVITIVSAESLVKFHS 379
Y+ R+GR R ++ ++S + +
Sbjct: 427 EYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTA 461
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 4e-07
Identities = 53/325 (16%), Positives = 109/325 (33%), Gaps = 30/325 (9%)
Query: 72 SIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQV 131
S++ V ++ V +PQ I + ++ + + L D
Sbjct: 199 SVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVS------ 252
Query: 132 ERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191
E + QI G K + ++ + ADK + + + S L
Sbjct: 253 EELGKLFQIQNREFGTQKYEQWIVGVHK---ACSVFQMADKEEESRVCKALFLYTSHLRK 309
Query: 192 MKQMLVVSAT-YSHDNLATLQKYMVDPLLIRPEDATRPLL-----GVKQLVALIPECKNP 245
L++S D L L+ + D ++ R L +++L + + N
Sbjct: 310 YNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNE 369
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN----ANFGAEYLSG---- 297
+ + D L + P + ++F + + + + + + L+G
Sbjct: 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRT 429
Query: 298 ----AQDQKARLASLDSFK-RGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHR 352
A+ L++F+ G IL+ T +A GID A +LVI E + +
Sbjct: 430 NRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQT 489
Query: 353 MGRAGRYGTRGLVITIVSAESLVKF 377
GR + S+ +++
Sbjct: 490 RGRGRA--RDSKCFLLTSSADVIEK 512
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 54.2 bits (129), Expect = 5e-07
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 15/145 (10%)
Query: 236 VALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN----ANFG 291
V+ P +NP L + L + P ++F + + + + +
Sbjct: 371 VSRDPSNENPKLEDLCFI--LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLK 428
Query: 292 AEYLSG--------AQDQKARLASLDSFK-RGKVRILVTTDLAARGIDAANVDLVINLEI 342
L+G A+ LD+FK G IL+ T +A GID A +LVI E
Sbjct: 429 PGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY 488
Query: 343 PHDAATYLHRMGRAGRYGTRGLVIT 367
+ + GR G++ ++T
Sbjct: 489 VGNVIKMIQTRGRGRARGSKCFLLT 513
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 1e-06
Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 13/149 (8%)
Query: 232 VKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN---- 287
+L+AL + N + + + L P + ++F+ + + + +
Sbjct: 357 EPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL 416
Query: 288 ANFGAEYLSG--------AQDQKARLASLDSFKRGKV-RILVTTDLAARGIDAANVDLVI 338
L G ++ LD+FK K R+L+ T +A GID +LV+
Sbjct: 417 NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 476
Query: 339 NLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
E + + GR G++ +++T
Sbjct: 477 LYEYSGNVTKMIQVRGRGRAAGSKCILVT 505
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 2e-06
Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 7/143 (4%)
Query: 221 RPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEV 280
R D P ++ N R + L+ L+ + ++
Sbjct: 463 RARDMLYPERIYQEFEGDNATWWNFDPRV----EWLMGYLTSHRSQKVLVICAKAATALQ 518
Query: 281 ICENL-ANANFGAEYLSGAQDQKARLASLDSFKR--GKVRILVTTDLAARGIDAANVDLV 337
+ + L A R + F ++L+ +++ + G + +
Sbjct: 519 LEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHM 578
Query: 338 INLEIPHDAATYLHRMGRAGRYG 360
+ ++P + R+GR R G
Sbjct: 579 VMFDLPFNPDLLEQRIGRLDRIG 601
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 51.9 bits (123), Expect = 3e-06
Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 13/149 (8%)
Query: 232 VKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN---- 287
+L+AL + N + + + L P + ++F+ + + + +
Sbjct: 598 EPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL 657
Query: 288 ANFGAEYLSG--------AQDQKARLASLDSFKRGKV-RILVTTDLAARGIDAANVDLVI 338
L G ++ LD+FK K R+L+ T +A GID +LV+
Sbjct: 658 NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717
Query: 339 NLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
E + + GR G++ +++T
Sbjct: 718 LYEYSGNVTKMIQVRGRGRAAGSKCILVT 746
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 4e-06
Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 13/149 (8%)
Query: 232 VKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN---- 287
+L+AL + N + + + L P + ++F+ + + + +
Sbjct: 598 EPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL 657
Query: 288 ANFGAEYLSG--------AQDQKARLASLDSFKRGKV-RILVTTDLAARGIDAANVDLVI 338
L G ++ LD+FK K R+L+ T +A GID +LV+
Sbjct: 658 NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717
Query: 339 NLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
E + + GR G++ +++T
Sbjct: 718 LYEYSGNVTKMIQVRGRGRAAGSKCILVT 746
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 6e-04
Identities = 30/180 (16%), Positives = 69/180 (38%), Gaps = 12/180 (6%)
Query: 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTII-LAPTREIAV 104
Q+ +NG +A++ + +G+GK+ V ++ + +P + ++ LA +
Sbjct: 251 SYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYE 310
Query: 105 QITDVVRSV----GAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYL-NM 159
Q +V + G V+ + + F VE+ I+V +P + + L ++
Sbjct: 311 QQKNVFKHHFERQGYSVQGISGENFS-NVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSL 369
Query: 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ-----MLVVSATYSHDNLATLQKYM 214
L I DE + Y + +L ++A+ N +++ +
Sbjct: 370 SIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETI 429
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 5e-06
Identities = 48/326 (14%), Positives = 92/326 (28%), Gaps = 66/326 (20%)
Query: 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117
G ++ G GK+ F+ L + + ++ +T++LAPTR V+ +
Sbjct: 8 GMTTVLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTR-------VVLSEMKEAF 57
Query: 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
L V + R V + + + L+ + + + IMDEA L
Sbjct: 58 HGLDVKFHTQAFSAHGSGREVIDAMC-HATLTYRM-LEPTRVVNWEVIIMDEAHFLDPAS 115
Query: 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237
+ ++++AT P + +
Sbjct: 116 IAARGWAAHRARANESATILMTAT--------------------PPGTSDEFPHSNGEIE 155
Query: 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG 297
+ E F V+ +L A L+
Sbjct: 156 DVQT------DIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR 209
Query: 298 AQDQKARLASLDSFKRGKVRILVTTDLAARG--IDAANVDLVI----------------- 338
++ K+ K ++ TD+A G + V+ V+
Sbjct: 210 KTFEREYPT----IKQKKPDFILATDIAEMGANLC---VERVLDCRTAFKPVLVDEGRKV 262
Query: 339 --NLEIPHDAATYLHRMGRAGRYGTR 362
+ A++ R GR GR R
Sbjct: 263 AIKGPLRISASSAAQRRGRIGRNPNR 288
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 1e-05
Identities = 51/343 (14%), Positives = 106/343 (30%), Gaps = 25/343 (7%)
Query: 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105
Q A L I+ + G+S++ + A L + + +I+ PT + Q
Sbjct: 116 WYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQ 172
Query: 106 ITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLF 165
+ D + G ++ ++ K +VVG+ + ++K +
Sbjct: 173 MADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGT---WQTVVKQPKEWFSQFGMM 229
Query: 166 IMDEA------------DKLINTGFVEDITWIYS---QLPPMKQMLVVSATYSHDNLATL 210
+ DE L N F ++ + +
Sbjct: 230 MNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLM 289
Query: 211 QKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ--- 267
+ V L I P +L + + + + + K + L+ +
Sbjct: 290 EDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDEN 349
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT-DLAA 326
+ + + I + + N Y+SG D + R + GK I+V + + +
Sbjct: 350 AFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS 409
Query: 327 RGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV 369
GI N+ V+ L +GR R + T+
Sbjct: 410 TGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVW 452
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2355 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.97 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.97 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.97 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.97 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.97 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.97 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.97 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.97 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.96 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.96 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.96 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.96 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.96 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.96 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.96 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.96 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.95 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.95 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.95 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.95 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.95 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.95 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.95 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.95 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.94 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.93 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.93 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.92 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.89 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.87 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.86 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.86 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.85 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.85 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.85 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.84 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.83 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.83 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.83 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.8 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.79 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.79 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.65 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.73 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.72 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.7 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.66 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 98.84 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.35 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.82 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.75 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.74 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.71 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.66 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 97.66 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 97.53 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 97.18 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 96.97 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.59 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 95.58 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.48 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.46 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 95.43 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.11 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.1 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.07 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 94.93 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 94.6 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 94.51 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 94.4 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 94.24 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.21 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.12 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 93.96 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 93.72 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 93.7 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 93.58 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.54 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.45 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.44 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 93.04 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 92.9 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 92.71 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 92.48 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 92.41 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 92.4 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 92.28 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 91.82 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 91.77 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 91.63 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 91.62 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 91.57 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 91.54 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 91.49 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 91.41 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 91.19 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 91.18 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 90.64 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 90.52 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 90.29 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 89.79 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 89.65 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 89.54 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 89.33 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 89.05 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 88.86 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 88.72 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 87.79 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 87.12 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 87.0 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 86.8 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 86.73 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 86.57 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 86.49 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 86.42 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 84.99 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 84.77 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 84.66 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 84.28 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 84.07 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 84.05 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 83.96 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 83.79 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 83.03 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 82.54 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 82.14 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 82.07 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 80.77 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 80.61 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 80.42 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-49 Score=460.04 Aligned_cols=355 Identities=26% Similarity=0.491 Sum_probs=309.6
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC----CCCCe
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP----VQQPQ 92 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr----~qggR 92 (2355)
+.++.+|+++.+.+ +++.|...||..|+|+|.++++.++.++++|+++|||+|||++|+++++..+.... ..+++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 35678999999998 99999999999999999999999999999999999999999999999998887532 23678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEec
Q psy8497 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMD 168 (2355)
Q Consensus 93 VLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVD 168 (2355)
+|||+|+++|+.|+.+.++++.... ++++.+++|+..... ....++|+|+||++|.+++....+.+..+++||||
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred EEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 9999999999999999999997665 688888888865431 22458999999999999998888888999999999
Q ss_pred ccchhcccChHHHHHHHHHhC--CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCc
Q psy8497 169 EADKLINTGFVEDITWIYSQL--PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPS 246 (2355)
Q Consensus 169 EAHRLkN~GF~SrLeeILs~L--ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~s 246 (2355)
|||++.+.+|...+..++..+ +...|+|++|||++..+...+..++.++..+.+.........+.+.+..+...
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~---- 286 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY---- 286 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGG----
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcH----
Confidence 999999999999999999885 56789999999999998888888888888877766555556666666655432
Q ss_pred chhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q psy8497 247 LRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA 326 (2355)
Q Consensus 247 Lt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG 326 (2355)
.+...|..++..... ++||||++++.++.|++.|...++.+..+||++++.+|..+++.|++|+++|||||++++
T Consensus 287 ----~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~ 361 (434)
T 2db3_A 287 ----AKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVAS 361 (434)
T ss_dssp ----GHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGT
T ss_pred ----HHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhh
Confidence 355667777776554 599999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc-CHHHHHHHHH
Q psy8497 327 RGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE-SLVKFHSLMG 382 (2355)
Q Consensus 327 EGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd-DVEeIEsLrR 382 (2355)
+|||+|.+++||+||.|+++..|+||+||+||.|+.|.+++|+... +......+.+
T Consensus 362 rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~ 418 (434)
T 2db3_A 362 RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK 418 (434)
T ss_dssp SSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHH
T ss_pred CCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999843 4444444443
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=449.33 Aligned_cols=366 Identities=33% Similarity=0.553 Sum_probs=318.9
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
++...+|+.+.+.+ +++.|..+||..|+|+|.++++.++.++++|+++|||+|||++++++++..+.. .....++|||
T Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil 111 (410)
T 2j0s_A 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-QVRETQALIL 111 (410)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-TSCSCCEEEE
T ss_pred ccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-ccCCceEEEE
Confidence 35567899999888 999999999999999999999999999999999999999999999999877642 2356789999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
+|+++|+.|+.+.+.+++... ++.+..+.|+...... ...++|+|+||++|.+++....+.+..+++|||||||+
T Consensus 112 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~ 190 (410)
T 2j0s_A 112 APTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE 190 (410)
T ss_dssp CSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred cCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH
Confidence 999999999999999998766 7888888887654321 12368999999999999988878888999999999999
Q ss_pred hcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 173 LINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
+.+.++...+..++..++...|+|++|||++......+..++..+..+...........+.+.+..+... ..+
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k 263 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE-------EWK 263 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST-------THH
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH-------HhH
Confidence 9999999999999999999999999999999888777778888887776665555555666666655433 124
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...|..++......++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|
T Consensus 264 ~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 264 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcc
Confidence 45666666666667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccccccc
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNV 392 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~ 392 (2355)
.+++||+++.|+++..|+||+||+||.|++|.+++|+...+...+..+.+.+..++...+
T Consensus 344 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 344 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp TEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred cCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecc
Confidence 999999999999999999999999999999999999999999999999888777665443
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-48 Score=429.04 Aligned_cols=356 Identities=27% Similarity=0.467 Sum_probs=307.5
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
..+|+++.+++ +++.|...||..|+|+|.++++.++.+ +++||++|||+|||++++++++..+.. ...++++|||+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP-EDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-TCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-CCCCccEEEEC
Confidence 46899999988 999999999999999999999999998 899999999999999999999887653 23567899999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-c
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN-T 176 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN-~ 176 (2355)
|+++|+.|+.+++++++... ++.+..+.++.........++|+|+||++|..++....+.+..+++|||||||++.+ .
T Consensus 83 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 161 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQ 161 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCcc
Confidence 99999999999999997665 677888888776655555689999999999999988888889999999999999887 6
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHH
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaL 256 (2355)
++...+..+...++...|+|++|||++......+..++..+..+...........+.+.+..+... ..+...+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l 234 (395)
T 3pey_A 162 GLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE-------ADKFDVL 234 (395)
T ss_dssp THHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH-------HHHHHHH
T ss_pred ccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch-------HHHHHHH
Confidence 788888889999998999999999999888888888888877776665555555555555444322 2345666
Q ss_pred HHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccE
Q psy8497 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDL 336 (2355)
Q Consensus 257 LqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDT 336 (2355)
..++......++||||+++..++.+++.|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|.+++
T Consensus 235 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 314 (395)
T 3pey_A 235 TELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314 (395)
T ss_dssp HHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCE
Confidence 77777777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC------CHhHHHHHhhccCCCCCccEEEEEEcccCH-HHHHHHHHhhc
Q psy8497 337 VINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVSAESL-VKFHSLMGEIN 385 (2355)
Q Consensus 337 VIIyDSP~------SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV-EeIEsLrReLK 385 (2355)
||+++.|+ ++..|+||+|||||.|+.+.+++|+...+. ..+..+...+.
T Consensus 315 Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999 999999999999999999999999986544 44555544433
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-48 Score=433.34 Aligned_cols=367 Identities=32% Similarity=0.510 Sum_probs=314.3
Q ss_pred cccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCC
Q psy8497 14 VLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90 (2355)
Q Consensus 14 ~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qg 90 (2355)
....+....+|+.+.+.+ +++.|..+||..|+|+|.++++.++.+ +++||++|||+|||++|+++++..+.. ....
T Consensus 17 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-~~~~ 95 (412)
T 3fht_A 17 PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKY 95 (412)
T ss_dssp TTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-TSCS
T ss_pred CCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh-cCCC
Confidence 344456788999999988 999999999999999999999999987 899999999999999999999987763 2345
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-CCCCcEEEECHHHHHHHHHh-hcccCcCceEEEec
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIMD 168 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-irq~DILVTTPErLLDLLdr-r~LdLSkIdLLIVD 168 (2355)
+++|||+|+++|+.|+.++++++....+++.+....++...... ....+|+|+||++|..++.. ..+.+..+++||||
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 68999999999999999999999888888899888887665433 33479999999999888855 55667889999999
Q ss_pred ccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 169 EADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 169 EAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
|||++.+ .++...+..++..++...|+|++|||++......+..++..+..+...........+.+.+..+...
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 250 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR----- 250 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH-----
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh-----
Confidence 9999886 6778888888999998999999999999998888888888888887776665556666665554332
Q ss_pred hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 248 t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
..+...|..++......++||||++++.++.++..|...++.+..+||+|+..+|..+++.|++|+++|||||+++++
T Consensus 251 --~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 328 (412)
T 3fht_A 251 --DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 328 (412)
T ss_dssp --HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTS
T ss_pred --HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcccc
Confidence 234566667776666679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEecCCC------CHhHHHHHhhccCCCCCccEEEEEEcccC-HHHHHHHHHhhcccc
Q psy8497 328 GIDAANVDLVINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVSAES-LVKFHSLMGEINLDH 388 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~------SPqSYIQRIGRAGRiGQkGkVIVLVSsdD-VEeIEsLrReLKLKL 388 (2355)
|||+|++++||+++.|+ +...|+||+|||||.|+.|.+++++...+ ...+..+...+...+
T Consensus 329 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 396 (412)
T 3fht_A 329 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 396 (412)
T ss_dssp SCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCC
T ss_pred CCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCcc
Confidence 99999999999999995 67899999999999999999999997654 556666666555444
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-48 Score=434.53 Aligned_cols=366 Identities=34% Similarity=0.541 Sum_probs=313.9
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
....+|+.+.+++ +++.|...||..|+|+|.++++.++.++++||.+|||+|||++++++++..+.. ...+.++|||+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~ 96 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP-KLNKIQALIMV 96 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-TSCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-ccCCccEEEEc
Confidence 3467899999988 999999999999999999999999999999999999999999999999877652 22456899999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL 173 (2355)
|+++|+.|+.++++++.... ++.+..+.|+.... .....++|+|+||++|..++......+..+++|||||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 97 PTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 175 (400)
T ss_dssp SSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHh
Confidence 99999999999999997766 78888888876532 12345799999999999988887778889999999999999
Q ss_pred cccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHH
Q psy8497 174 INTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEE 253 (2355)
Q Consensus 174 kN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKk 253 (2355)
.+..+...+..++..++...|++++|||++......+..++..+..+..... .....+.+.+..+.. ..+.
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~k~ 246 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEE--------RQKL 246 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCG--------GGHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEech--------hhHH
Confidence 9888888888898888889999999999998888888888887776654432 223334444444332 2345
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
..+..++.....+++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|+
T Consensus 247 ~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 247 HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 56677777777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccCCC
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLV 395 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~eIV 395 (2355)
+++||+++.|+++..|+||+|||||.|++|.+++|+...+...+..+.+.++.++......+
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999888877765544433
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-49 Score=441.92 Aligned_cols=364 Identities=32% Similarity=0.538 Sum_probs=306.0
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+....|+.+.+.+ +++.|..+||..|+++|.++++.++.++++||++|||+|||++++++++..+.. ...+.++|||+
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~ 115 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-DLKATQALVLA 115 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-TSCSCCEEEEC
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-cCCceeEEEEe
Confidence 3457899999888 999999999999999999999999999999999999999999999999987653 23567899999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
|+++|+.|+.+++++++... ++.+..+.|+...... ...++|+|+||++|.+++....+.+..+++|||||||+
T Consensus 116 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 116 PTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp SSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred ChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 99999999999999997665 6778888877654321 24479999999999999988888888899999999999
Q ss_pred hcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 173 LINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
+.+.++...+..++..++...|+|+||||++......+..++..+..+...........+.+.+..+... ..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 267 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE-------EWK 267 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS-------TTH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH-------HhH
Confidence 9999999999999999999999999999999988888888888888887776666666666666555433 125
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...+..++......++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|
T Consensus 268 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 268 LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGG
T ss_pred HHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCcc
Confidence 56777888887778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccc
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFN 391 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe 391 (2355)
.+++||+++.|+++..|+||+|||||.|++|.+++|+...+...+..+...+...+...
T Consensus 348 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (414)
T 3eiq_A 348 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEM 406 (414)
T ss_dssp GCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEEC
T ss_pred CCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCcccc
Confidence 99999999999999999999999999999999999999998888888887776665443
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=438.50 Aligned_cols=359 Identities=25% Similarity=0.460 Sum_probs=304.2
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC---------
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP--------- 87 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr--------- 87 (2355)
+.++.+|+++.+++ +++.|...||..|+|+|.++++.++.++++|+++|||+|||++|+++++..+....
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 56678899999988 99999999999999999999999999999999999999999999999998876421
Q ss_pred --------CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhh
Q psy8497 88 --------VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLK 155 (2355)
Q Consensus 88 --------~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr 155 (2355)
...+++|||+|+++|+.|+.+.++++.... ++.+..++|+..... ....++|+|+||++|..++...
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 169 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG 169 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC
Confidence 123679999999999999999999987655 788888888864321 1234799999999999999888
Q ss_pred cccCcCceEEEecccchhcccChHHHHHHHHHh--CCC--CceEEEEEeccChhHHHHHHHhccCCeeeccCCCcccccc
Q psy8497 156 YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ--LPP--MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLG 231 (2355)
Q Consensus 156 ~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~--Lpp--nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~se 231 (2355)
.+.+..+++|||||||++.+.+|...+..++.. ++. ..|++++|||++......+..++..+..+...........
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSS
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccC
Confidence 778889999999999999999998998888874 332 5799999999998888888888888877666554444455
Q ss_pred ceEEEEeccCCCCCcchhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHH
Q psy8497 232 VKQLVALIPECKNPSLRYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310 (2355)
Q Consensus 232 VrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILEr 310 (2355)
+.+.+..+... .+...|..++... ...++||||++++.++.++++|...++.+..+||+|+..+|..+++.
T Consensus 250 i~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 250 ITQKVVWVEES--------DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp EEEEEEECCGG--------GHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEeccH--------hHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 55555554332 3456677777665 45699999999999999999999999999999999999999999999
Q ss_pred HhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 311 FRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
|++|+++|||||+++++|||+|++++||+++.|+++..|+||+||+||.|+.|.+++|+...+...+..+...+.
T Consensus 322 f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 322 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp HHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888877777765443
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=429.79 Aligned_cols=359 Identities=34% Similarity=0.541 Sum_probs=306.0
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
..|+++.+++ +++.|..+||..|+|+|.++++.++.++++||.+|||+|||++++++++..+.. .....++|||||++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC-CTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc-cCCCeeEEEECCCH
Confidence 5799999888 999999999999999999999999999999999999999999999999877652 23456899999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 101 EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 101 ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
+|+.|+.+.+.++....+++.+..+.|+...... ...++|+|+||++|..++....+.+..+++|||||||++.+
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh
Confidence 9999999999999888888999999988653221 12368999999999998888777889999999999999987
Q ss_pred c-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCcc-ccccceEEEEeccCCCCCcchhhhHH
Q psy8497 176 T-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATR-PLLGVKQLVALIPECKNPSLRYVDEE 253 (2355)
Q Consensus 176 ~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~-~~seVrQvVvqVpe~kn~sLt~lsKk 253 (2355)
+ ++...+..++..++...|+|++|||++......+..++..+..+....... ....+.+.+..+.. ..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 238 (391)
T 1xti_A 167 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--------NEKN 238 (391)
T ss_dssp SHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG--------GGHH
T ss_pred ccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc--------hhHH
Confidence 4 677888888888888999999999999988888888888887766554332 22334444443322 2345
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
..|..++......++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|.
T Consensus 239 ~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 239 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 66777777777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccC-HHHHHHHHHhhccccc
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES-LVKFHSLMGEINLDHA 389 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdD-VEeIEsLrReLKLKLa 389 (2355)
+++||+++.|+++..|+||+|||||.|+++.+++|+...+ ...+..+...+...+.
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS 375 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCE
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChh
Confidence 9999999999999999999999999999999999998764 4556666666655554
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-47 Score=417.50 Aligned_cols=353 Identities=30% Similarity=0.515 Sum_probs=302.9
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..+|+++.+.+ +++.|...||..|+|+|.++++.++.+ +++||.+|||+|||++++++++..+.. ..+.++|||+|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~--~~~~~~lil~P 82 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE--NNGIEAIILTP 82 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--SSSCCEEEECS
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc--cCCCcEEEEcC
Confidence 45799998888 999999999999999999999999988 689999999999999999998877653 34678999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
+++|+.|+.+.+.++.... ++.+..+.|+..... .....+|+|+||++|...+....+.+..+++|||||||.+.+
T Consensus 83 ~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 83 TRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp CHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh
Confidence 9999999999999987654 678888888765321 112478999999999998888777788999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
.++...+..++..++...++|++|||++......+..++.....+..... ..+.+.+..+.. ..+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~ 229 (367)
T 1hv8_A 162 MGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNE--------NERFEA 229 (367)
T ss_dssp TTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCG--------GGHHHH
T ss_pred hchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeCh--------HHHHHH
Confidence 99999999999999889999999999999888888877766554443322 133333333322 234556
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
|..++. ....++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|.++
T Consensus 230 l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 230 LCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 666665 3456999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccc
Q psy8497 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHA 389 (2355)
Q Consensus 336 TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLa 389 (2355)
+||+++.|+++..|+||+|||||.|+++.+++++...+...+..+.+.++.++.
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred EEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999887776654
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-49 Score=438.89 Aligned_cols=361 Identities=35% Similarity=0.571 Sum_probs=177.8
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+.+..|+++.+++ +++.|..+||..|+|+|.++++.++.++++||.+|||+|||++++++++..+.. ...++++|||+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~ 96 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLA 96 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-TCCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-cCCCCCEEEEc
Confidence 4467899999988 999999999999999999999999999999999999999999999999887653 23467899999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC---CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP---KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq---irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
|+++|+.|+.+.+.++.... ++.+..+.|+...... ...++|+|+||++|...+....+.+..+++|||||+|++.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 99999999999999987665 7888888887653221 1137899999999999888877778899999999999999
Q ss_pred ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHH
Q psy8497 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254 (2355)
Q Consensus 175 N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKke 254 (2355)
+.++...+..++..+++..|+|++|||++......+..++..+..+...........+.+.+..+... ..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 248 (394)
T 1fuu_A 176 SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE-------EYKYE 248 (394)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------
T ss_pred CCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch-------hhHHH
Confidence 88899999999999999999999999999988888888888877766554433333333333322211 11234
Q ss_pred HHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc
Q psy8497 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334 (2355)
Q Consensus 255 aLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV 334 (2355)
.+..++......++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|.+
T Consensus 249 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~ 328 (394)
T 1fuu_A 249 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccC
Confidence 45555555556799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 335 DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 335 DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
++||+++.|+++..|+||+|||||.|++|.+++|+...+...+..+.+.+...+
T Consensus 329 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 382 (394)
T 1fuu_A 329 SLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI 382 (394)
T ss_dssp ------------------------------------------------------
T ss_pred CEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999888887777766555444
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=443.55 Aligned_cols=359 Identities=33% Similarity=0.525 Sum_probs=176.4
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEE
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTII 95 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLI 95 (2355)
..+.+|+.+.+.+ +++.|..+||..|+|+|.++++.++.+ +++|+++|||+|||++|+++++..+.. ....+++||
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~li 167 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLC 167 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT-TSCSCCEEE
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh-cCCCCcEEE
Confidence 3467899999888 999999999999999999999999987 889999999999999999999877653 234558999
Q ss_pred EcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-CCCCcEEEECHHHHHHHHHh-hcccCcCceEEEecccchh
Q psy8497 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 96 LVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-irq~DILVTTPErLLDLLdr-r~LdLSkIdLLIVDEAHRL 173 (2355)
|+|+++|+.|+.++++++....+.+.+.+..++...... ....+|+|+||++|.+++.. ..+.+..+++|||||+|++
T Consensus 168 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred EeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 999999999999999999888888888888887654432 33478999999999888855 4567789999999999999
Q ss_pred cc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 174 IN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 174 kN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
.+ .++...+..++..++...|+|++|||++.........++..+..+...........+.+.+..+... ..+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~ 320 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR-------DEK 320 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH-------HHH
Confidence 86 5788888888888998999999999999988888888888887776665554444455544443322 123
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|
T Consensus 321 ~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 321 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 34455555555567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCC------CHhHHHHHhhccCCCCCccEEEEEEcccC-HHHHHHHHHhhc
Q psy8497 333 NVDLVINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVSAES-LVKFHSLMGEIN 385 (2355)
Q Consensus 333 aVDTVIIyDSP~------SPqSYIQRIGRAGRiGQkGkVIVLVSsdD-VEeIEsLrReLK 385 (2355)
++++||++|.|+ +...|+||+|||||.|+.|.+++|+...+ ...+..+...+.
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp ------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 999999999995 56899999999999999999999997654 444555444333
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=400.65 Aligned_cols=328 Identities=27% Similarity=0.456 Sum_probs=277.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 31 PIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 31 pLLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
.|.+.|..+||..|+|+|.++++.+++++++||.+|||+|||++++++++.. +.++|||+|+++|+.|+.+.+
T Consensus 4 ~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~~q~~~~~ 76 (337)
T 2z0m_A 4 KIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELTRQVASHI 76 (337)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999888753 567999999999999999999
Q ss_pred HHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHH
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs 187 (2355)
+++.... ++.+..+.|+..... ....++|+|+||++|...+....+.+..+++|||||||++.+.++...+..++.
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~ 155 (337)
T 2z0m_A 77 RDIGRYM-DTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILA 155 (337)
T ss_dssp HHHTTTS-CCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhhc-CCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHh
Confidence 9987665 678888888764321 122378999999999998888777788999999999999999999999999999
Q ss_pred hCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCe
Q psy8497 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267 (2355)
Q Consensus 188 ~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgR 267 (2355)
.++...+++++|||++......+..++..+..+... .....+...+..+... ....+..+......+
T Consensus 156 ~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 222 (337)
T 2z0m_A 156 QTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDD----------WRSKVQALRENKDKG 222 (337)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSS----------SHHHHHHHHTCCCSS
T ss_pred hCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChH----------HHHHHHHHHhCCCCc
Confidence 999899999999999998888888888776655332 1222333333333322 112335555566779
Q ss_pred EEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHh
Q psy8497 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAA 347 (2355)
Q Consensus 268 VLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPq 347 (2355)
+||||++++.++.+++.|. .+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||++++|+++.
T Consensus 223 ~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~ 298 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLR 298 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHH
T ss_pred EEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHH
Confidence 9999999999999998886 578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 348 TYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 348 SYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
.|+||+|||||.|+++.+++|+. .+...++.+.+.+
T Consensus 299 ~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 299 TYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp HHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred HhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999999 7777777775543
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=434.02 Aligned_cols=357 Identities=24% Similarity=0.380 Sum_probs=288.1
Q ss_pred cHH-HHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEccCCchHHHHHHHHHHHHHHhcC---CCCCeEEEEcccHHH
Q psy8497 29 EKP-IRQGLQENGFVKESPIQMAAFPYVL--NGYDAIVQSKSGTGKSIVFVVAALNKLIKLP---VQQPQTIILAPTREI 102 (2355)
Q Consensus 29 Lkp-LLK~Lqa~GF~eLRPYQeEALn~LL--SGRNVILAAPTGSGKTLVALIAILerL~ekr---~qggRVLILVPTRAL 102 (2355)
+.+ +++.|...||..|+|+|.++++.++ .++++|+++|||+|||++|+++++..+.... ....++|||+|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 555 9999999999999999999999999 6789999999999999999999999887533 224589999999999
Q ss_pred HHHHHHHHHHHhcc---cCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhh-cccCcCceEEEecccchh
Q psy8497 103 AVQITDVVRSVGAH---VKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLK-YLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 103 AqQ~anwLREFgk~---APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr-~LdLSkIdLLIVDEAHRL 173 (2355)
+.|+.+.++++... .+.+.+..+.|+...... ...++|||+||++|.+++... ...+..+++|||||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999997542 335667888887653321 124789999999998887654 335678999999999999
Q ss_pred cccChHHHHHHHHHhCC-------CCceEEEEEeccChhHHHHHHHhccCCeeeccCCC----ccccccceEEEEeccCC
Q psy8497 174 INTGFVEDITWIYSQLP-------PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDA----TRPLLGVKQLVALIPEC 242 (2355)
Q Consensus 174 kN~GF~SrLeeILs~Lp-------pnrQILLLSATLS~EILElLkKfLrdPvIIrVese----e~~~seVrQvVvqVpe~ 242 (2355)
.+++|...+..++..++ ...|+|+||||++..+...+..++..+..+..... ......+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999888888877652 36799999999998888888777776655443221 11222333444333322
Q ss_pred CCCcchhhhHHHHHHHHHhc-CCCCeEEEEEcccccHHHHHHHHHhc---CCccEEeeCCCCHHHHHHHHHHHhCCCccE
Q psy8497 243 KNPSLRYVDEEKKLVQLLSQ-TPFNQCVIFSNYQLRPEVICENLANA---NFGAEYLSGAQDQKARLASLDSFKRGKVRI 318 (2355)
Q Consensus 243 kn~sLt~lsKkeaLLqLLer-l~kgRVLVFSQTRKmAEiLADyLrEr---GIKVarLHGgMSqEERqeILErFRSGEIdV 318 (2355)
..........+...+.. ....++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+++|
T Consensus 319 ---~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 319 ---ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp ---THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred ---HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 11112223334444433 45679999999999999999999987 899999999999999999999999999999
Q ss_pred EEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 319 LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 319 LVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
||||+++++|||+|++++||+++.|.++..|+||+|||||.|+.|.+++|+...+...+..+.......+
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~ 465 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVI 465 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCC
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999888877655544
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=438.71 Aligned_cols=365 Identities=24% Similarity=0.376 Sum_probs=293.7
Q ss_pred ccCcccCC----cHH-HHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEccCCchHHHHHHHHHHHHHHhcC---CCC
Q psy8497 21 LFENDVLI----EKP-IRQGLQENGFVKESPIQMAAFPYVL--NGYDAIVQSKSGTGKSIVFVVAALNKLIKLP---VQQ 90 (2355)
Q Consensus 21 V~SFEeLl----Lkp-LLK~Lqa~GF~eLRPYQeEALn~LL--SGRNVILAAPTGSGKTLVALIAILerL~ekr---~qg 90 (2355)
..+|+++. +.+ |++.|..+||..|+|+|.++++.++ .++++|+++|||+|||++|+++++..+.... ...
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~ 95 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYM 95 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTS
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCC
Confidence 34455443 555 9999999999999999999999999 6789999999999999999999999887532 234
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhc---ccCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhh-cccCcC
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGA---HVKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLK-YLNMDS 161 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk---~APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr-~LdLSk 161 (2355)
.++|||+|+++|+.|+.+.++++.. ..+.+.+..+.|+...... ...++|||+||++|.+++... ...+..
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccccc
Confidence 6899999999999999999999864 3345677888887653321 123789999999999888764 445788
Q ss_pred ceEEEecccchhcccChHHHHHHHHHhCC-------CCceEEEEEeccChhHHHHHHHhccCCeeeccCCC----ccccc
Q psy8497 162 VRLFIMDEADKLINTGFVEDITWIYSQLP-------PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDA----TRPLL 230 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~GF~SrLeeILs~Lp-------pnrQILLLSATLS~EILElLkKfLrdPvIIrVese----e~~~s 230 (2355)
+++|||||||++.+++|...+..++..++ ...|+|+||||++..+...+..++..+..+..... .....
T Consensus 176 ~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 255 (579)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT
T ss_pred CCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccccc
Confidence 99999999999999999888888877653 26799999999998888888887777655443321 12222
Q ss_pred cceEEEEeccCCCCCcchhhhHHHHHHHHHhc-CCCCeEEEEEcccccHHHHHHHHHhc---CCccEEeeCCCCHHHHHH
Q psy8497 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQ-TPFNQCVIFSNYQLRPEVICENLANA---NFGAEYLSGAQDQKARLA 306 (2355)
Q Consensus 231 eVrQvVvqVpe~kn~sLt~lsKkeaLLqLLer-l~kgRVLVFSQTRKmAEiLADyLrEr---GIKVarLHGgMSqEERqe 306 (2355)
.+.+.+...... ..........+...+.. ....++||||+++..++.++..|... ++.+..+||+|++.+|..
T Consensus 256 ~i~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 256 RIDQSVVISEKF---ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp TEEEEEEEESST---THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred ccceEEEEecch---hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 334444333322 11122233444444443 45579999999999999999999987 899999999999999999
Q ss_pred HHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcc
Q psy8497 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINL 386 (2355)
Q Consensus 307 ILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKL 386 (2355)
+++.|++|+++|||||+++++|||+|.+++||+++.|.++..|+||+|||||.|+.+.+++|+...+...+..+......
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888776555
Q ss_pred cc
Q psy8497 387 DH 388 (2355)
Q Consensus 387 KL 388 (2355)
.+
T Consensus 413 ~~ 414 (579)
T 3sqw_A 413 VI 414 (579)
T ss_dssp CC
T ss_pred Cc
Confidence 44
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=383.94 Aligned_cols=330 Identities=19% Similarity=0.279 Sum_probs=249.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
+|+|||.+++++++.+ ++||++|||+|||++++++++..+. ....++|||||+++|+.||.+.+.++... +...+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT---KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH---HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHHHhCc-chhhe
Confidence 7999999999999999 9999999999999999988887765 34678999999999999999999998632 35688
Q ss_pred EEEECCccccCC---CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 123 DYFIGGTQVERP---KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 123 VvytGGkq~rkq---irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.|+...... ...++|+|+||+.|...+....+.+..|++|||||||++.+......+...+.......++|+||
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lT 163 (494)
T 1wp9_A 84 VALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLT 163 (494)
T ss_dssp EEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEe
Confidence 888887654311 12378999999999998887777889999999999999987766666666666667788999999
Q ss_pred eccChhHH--HHHHHhccCC-eeeccCCCccc---c--ccceEEEEeccCC-----------------------------
Q psy8497 200 ATYSHDNL--ATLQKYMVDP-LLIRPEDATRP---L--LGVKQLVALIPEC----------------------------- 242 (2355)
Q Consensus 200 ATLS~EIL--ElLkKfLrdP-vIIrVesee~~---~--seVrQvVvqVpe~----------------------------- 242 (2355)
|||..... ..+..++... ..+........ . ..........+..
T Consensus 164 aTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T 1wp9_A 164 ASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS 243 (494)
T ss_dssp SCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 99984322 2222222211 11111000000 0 0000000000000
Q ss_pred -----------------------CCCc---------------------------c-------------------------
Q psy8497 243 -----------------------KNPS---------------------------L------------------------- 247 (2355)
Q Consensus 243 -----------------------kn~s---------------------------L------------------------- 247 (2355)
...+ .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (494)
T 1wp9_A 244 PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK 323 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSH
T ss_pred CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhH
Confidence 0000 0
Q ss_pred ----------------hhhhHHHHHHHHHhc----CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeC--------CC
Q psy8497 248 ----------------RYVDEEKKLVQLLSQ----TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG--------AQ 299 (2355)
Q Consensus 248 ----------------t~lsKkeaLLqLLer----l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHG--------gM 299 (2355)
....+...|..++.. ....++||||+++..++.|++.|...++.+..+|| +|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~ 403 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGL 403 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC------
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccC
Confidence 011133445555554 46679999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHH
Q psy8497 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFH 378 (2355)
Q Consensus 300 SqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIE 378 (2355)
+..+|..+++.|++|.++|||||+++++|||+|.+++||++|+||++..|+||+|||||.|+ +.+++|+...+.+...
T Consensus 404 ~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee~~ 481 (494)
T 1wp9_A 404 SQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEAY 481 (494)
T ss_dssp -CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHHHH
T ss_pred CHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999888766543
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-41 Score=408.95 Aligned_cols=344 Identities=17% Similarity=0.229 Sum_probs=270.4
Q ss_pred ccccCcccCCcHH-HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 19 DVLFENDVLIEKP-IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
...+.+..+.+.+ +.+.|.. +||..|+|+|.++++.++.++++|+.+|||+|||++|+++++. ..+.+|||
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~-------~~g~~lVi 90 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC-------SDGFTLVI 90 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-------SSSEEEEE
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH-------cCCcEEEE
Confidence 3455566677777 9999998 7999999999999999999999999999999999999999863 25689999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----------CCCCCcEEEECHHHHHH---HHH--hhcccCcC
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----------PKRPVQIVVGSPGRIKQ---MIK--LKYLNMDS 161 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----------qirq~DILVTTPErLLD---LLd--rr~LdLSk 161 (2355)
+|+++|+.|+.+.+.++ ++.+..+.|+..... ....++|||+||++|.. ++. .....+..
T Consensus 91 sP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~ 165 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARR 165 (591)
T ss_dssp CSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTC
T ss_pred eCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccC
Confidence 99999999999999987 567778887754321 23458999999998742 221 12334678
Q ss_pred ceEEEecccchhcccC--hHHHHHH--HHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEE
Q psy8497 162 VRLFIMDEADKLINTG--FVEDITW--IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~G--F~SrLee--ILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVv 237 (2355)
+.+|||||||++.+++ |...+.. ++....+..++|+||||++..+...+..++..+..+..... .....+...+.
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~ 244 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-FNRPNLYYEVR 244 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-CCCTTEEEEEE
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-CCCcccEEEEE
Confidence 8999999999999876 4333332 33334457899999999999888877777654322211111 11122222222
Q ss_pred eccCCCCCcchhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCc
Q psy8497 238 LIPECKNPSLRYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316 (2355)
Q Consensus 238 qVpe~kn~sLt~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEI 316 (2355)
.... ........|+.++... ...++||||++++.++.|+..|...|+.+..+||+|+..+|..+++.|+.|++
T Consensus 245 ~~~~------~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~ 318 (591)
T 2v1x_A 245 QKPS------NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEI 318 (591)
T ss_dssp ECCS------SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred eCCC------cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 1111 1123445666666543 55799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHH
Q psy8497 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 317 dVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLr 381 (2355)
+|||||+++++|||+|++++||++++|.++..|+|++|||||.|+++.+++|+...+...+..++
T Consensus 319 ~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 319 QVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp SEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred eEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877766665554
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=404.20 Aligned_cols=335 Identities=20% Similarity=0.303 Sum_probs=270.0
Q ss_pred cCcccCCcHH-HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 22 FENDVLIEKP-IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
..|+.+.+.+ +++.|.. +||..|+|+|.++++.++.++++||.+|||+|||++|+++++.. .+.+|||+|+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-------~g~~lvi~P~ 74 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-------NGLTVVVSPL 74 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-------SSEEEEECSC
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-------CCCEEEECCh
Confidence 4789999988 9999998 89999999999999999999999999999999999999888732 4679999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
++|+.|+.+.+.++ ++.+..+.++..... ....++|+|+||++|........+....+.+|||||||
T Consensus 75 ~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 75 ISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp HHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred HHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcc
Confidence 99999999999886 566777777654221 11237899999999864333334455789999999999
Q ss_pred hhcccC--hH---HHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhc--cCCeeeccCCCccccccceEEEEeccCCCC
Q psy8497 172 KLINTG--FV---EDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM--VDPLLIRPEDATRPLLGVKQLVALIPECKN 244 (2355)
Q Consensus 172 RLkN~G--F~---SrLeeILs~LppnrQILLLSATLS~EILElLkKfL--rdPvIIrVesee~~~seVrQvVvqVpe~kn 244 (2355)
++.+++ |. ..+..+...+ +..++|+||||+.......+...+ ..+.++.... . ...+...+ ...
T Consensus 150 ~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~--r~~l~~~v--~~~--- 220 (523)
T 1oyw_A 150 CISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF-D--RPNIRYML--MEK--- 220 (523)
T ss_dssp GGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC-C--CTTEEEEE--EEC---
T ss_pred ccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC-C--CCceEEEE--EeC---
Confidence 999876 43 3334445555 468899999999988776665544 3343332211 1 11222211 111
Q ss_pred CcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc
Q psy8497 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324 (2355)
Q Consensus 245 ~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA 324 (2355)
......|+.++......++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|+++|||||++
T Consensus 221 -----~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a 295 (523)
T 1oyw_A 221 -----FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA 295 (523)
T ss_dssp -----SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT
T ss_pred -----CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 123456777777666679999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 325 LGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+++|||+|++++||+++.|+++..|+|++|||||.|.++.+++|+...+...+..++.
T Consensus 296 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998877777666654
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=393.33 Aligned_cols=335 Identities=18% Similarity=0.244 Sum_probs=199.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC-CCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV-QQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~-qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+..+|+|||.+++++++.++++||++|||+|||++|+++++..+..... .++++|||||+++|+.||.+.+.+++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 82 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ- 82 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 3458999999999999999999999999999999999999988875321 26789999999999999999999997765
Q ss_pred CcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcc-cCcCceEEEecccchhcccChHHHHH-HHHHh-C--
Q psy8497 119 NLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYL-NMDSVRLFIMDEADKLINTGFVEDIT-WIYSQ-L-- 189 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~L-dLSkIdLLIVDEAHRLkN~GF~SrLe-eILs~-L-- 189 (2355)
++.+..++|+....... ..++|+|+||++|...+....+ .+..+++|||||||++.+.+.+..+. .++.. +
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc
Confidence 78899999987544321 2378999999999999988776 78899999999999999877544442 22221 1
Q ss_pred -CCCceEEEEEeccChh----------HHHHHHHhccCCeeeccCCCcc----ccccceEEEEeccCCCC----------
Q psy8497 190 -PPMKQMLVVSATYSHD----------NLATLQKYMVDPLLIRPEDATR----PLLGVKQLVALIPECKN---------- 244 (2355)
Q Consensus 190 -ppnrQILLLSATLS~E----------ILElLkKfLrdPvIIrVesee~----~~seVrQvVvqVpe~kn---------- 244 (2355)
.+..++|+||||+... ....+...+....+........ ...........+.....
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 3568999999999542 1111112222111111111000 00000000000000000
Q ss_pred -------------------------Cc------c----------------------------------------------
Q psy8497 245 -------------------------PS------L---------------------------------------------- 247 (2355)
Q Consensus 245 -------------------------~s------L---------------------------------------------- 247 (2355)
.. .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 00 0
Q ss_pred ----------------------------------------------hhhhHHHHHHHHHhc----CCCCeEEEEEccccc
Q psy8497 248 ----------------------------------------------RYVDEEKKLVQLLSQ----TPFNQCVIFSNYQLR 277 (2355)
Q Consensus 248 ----------------------------------------------t~lsKkeaLLqLLer----l~kgRVLVFSQTRKm 277 (2355)
....+...|..+|.. ....++||||+++.+
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 001133344444432 456799999999999
Q ss_pred HHHHHHHHHhc------------CCccEEeeCCCCHHHHHHHHHHHhC-CCccEEEEecccccccCCCCccEEEEecCCC
Q psy8497 278 PEVICENLANA------------NFGAEYLSGAQDQKARLASLDSFKR-GKVRILVTTDLAARGIDAANVDLVINLEIPH 344 (2355)
Q Consensus 278 AEiLADyLrEr------------GIKVarLHGgMSqEERqeILErFRS-GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~ 344 (2355)
++.|+++|... |..+..+||+|+..+|..+++.|++ |.++|||||+++++|||+|+|++||+||+|+
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~ 482 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 482 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCS
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 99999999875 5566677888999999999999999 9999999999999999999999999999999
Q ss_pred CHhHHHHHhhccCCCCCccEEEEEEcccCHHHH
Q psy8497 345 DAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377 (2355)
Q Consensus 345 SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeI 377 (2355)
|+..|+||+|| ||. .++.+++|+...+....
T Consensus 483 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 483 NVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp CHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred CHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 99999999999 997 88999999987766554
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-41 Score=389.32 Aligned_cols=335 Identities=16% Similarity=0.227 Sum_probs=225.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
+|+|||.+++++++.++++||++|||+|||++|+++++..+.... ..++++|||||+++|+.||.+.+.+++... ++.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-CcE
Confidence 799999999999999999999999999999999999998887522 226789999999999999999999997766 788
Q ss_pred EEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcc-cCcCceEEEecccchhcccChHHHH-HHHHHhC-----C
Q psy8497 122 VDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYL-NMDSVRLFIMDEADKLINTGFVEDI-TWIYSQL-----P 190 (2355)
Q Consensus 122 VVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~L-dLSkIdLLIVDEAHRLkN~GF~SrL-eeILs~L-----p 190 (2355)
+..++|+....... ..++|+|+||++|...+....+ .+..+++|||||||++.+.+.+..+ ..++... .
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 99999998654331 2378999999999999887766 6888999999999999877533332 2333322 2
Q ss_pred CCceEEEEEeccChhH-------HH---HHHHhccCCeeeccCCCc----cccccceEEEEeccCCCC------------
Q psy8497 191 PMKQMLVVSATYSHDN-------LA---TLQKYMVDPLLIRPEDAT----RPLLGVKQLVALIPECKN------------ 244 (2355)
Q Consensus 191 pnrQILLLSATLS~EI-------LE---lLkKfLrdPvIIrVesee----~~~seVrQvVvqVpe~kn------------ 244 (2355)
+..++|+||||+.... .. .+...+....+....... ............+.....
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMK 242 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHH
Confidence 4579999999996421 11 122222222222111100 000000000110100000
Q ss_pred -------------------------C-----c------------------------------------------------
Q psy8497 245 -------------------------P-----S------------------------------------------------ 246 (2355)
Q Consensus 245 -------------------------~-----s------------------------------------------------ 246 (2355)
. .
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 322 (555)
T 3tbk_A 243 ETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQM 322 (555)
T ss_dssp HHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 0 0
Q ss_pred --------------------------------------------chhhhHHHHHHHHHhc----CCCCeEEEEEcccccH
Q psy8497 247 --------------------------------------------LRYVDEEKKLVQLLSQ----TPFNQCVIFSNYQLRP 278 (2355)
Q Consensus 247 --------------------------------------------Lt~lsKkeaLLqLLer----l~kgRVLVFSQTRKmA 278 (2355)
.....+...|..+|.. ....++||||+++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~ 402 (555)
T 3tbk_A 323 TDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALV 402 (555)
T ss_dssp HHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHH
Confidence 0001223344444432 4567999999999999
Q ss_pred HHHHHHHHhcC------------CccEEeeCCCCHHHHHHHHHHHhC-CCccEEEEecccccccCCCCccEEEEecCCCC
Q psy8497 279 EVICENLANAN------------FGAEYLSGAQDQKARLASLDSFKR-GKVRILVTTDLAARGIDAANVDLVINLEIPHD 345 (2355)
Q Consensus 279 EiLADyLrErG------------IKVarLHGgMSqEERqeILErFRS-GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~S 345 (2355)
+.|+++|...+ ..+..+||+|+..+|..+++.|++ |.++|||||+++++|||+|.|++||+||+|+|
T Consensus 403 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s 482 (555)
T 3tbk_A 403 DALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGN 482 (555)
T ss_dssp HHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSS
T ss_pred HHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCC
Confidence 99999999863 345556679999999999999999 99999999999999999999999999999999
Q ss_pred HhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 346 AATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
+..|+||+|| ||. ..+.+++|+...+......+
T Consensus 483 ~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 483 VIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999 897 89999999988776655433
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=382.92 Aligned_cols=321 Identities=19% Similarity=0.245 Sum_probs=250.0
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+.+.+.. +|+ +|+|+|.++++.++.++++|+++|||+|||++++++++..+. .++++|||+|+++|+.|+.+.+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHHHHHHH
Confidence 5555555 466 899999999999999999999999999999999888876653 4678999999999999999999
Q ss_pred HHHhcccCCcEEEEEECCccccC-------C-CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-------
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER-------P-KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN------- 175 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk-------q-irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN------- 175 (2355)
++++. .++++..++|+..... . ...++|+|+||++|.+++.. +.+..+++|||||||++..
T Consensus 85 ~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~ 160 (414)
T 3oiy_A 85 QKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 160 (414)
T ss_dssp HHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHH
T ss_pred HHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhh
Confidence 99876 4889999999876411 1 12379999999999877764 5667899999999997653
Q ss_pred ----cChHHH-HHHHHHhCC-----------CCceEEEEEec-cChhHHHH-HHHhccCCeeeccCCCccccccceEEEE
Q psy8497 176 ----TGFVED-ITWIYSQLP-----------PMKQMLVVSAT-YSHDNLAT-LQKYMVDPLLIRPEDATRPLLGVKQLVA 237 (2355)
Q Consensus 176 ----~GF~Sr-LeeILs~Lp-----------pnrQILLLSAT-LS~EILEl-LkKfLrdPvIIrVesee~~~seVrQvVv 237 (2355)
.+|... +..++..++ ...|+|++||| ++...... ...++. +.+.........+.+.+.
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~ 236 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRI 236 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEE
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheee
Confidence 556566 677777765 78899999999 44333322 222222 122222222333444443
Q ss_pred eccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccE-EeeCCCCHHHHHHHHHHHhCCCc
Q psy8497 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAE-YLSGAQDQKARLASLDSFKRGKV 316 (2355)
Q Consensus 238 qVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVa-rLHGgMSqEERqeILErFRSGEI 316 (2355)
.. .+...|..++... ..++||||+++..++.++..|...++.+. .+||. +|. ++.|++|++
T Consensus 237 ~~-----------~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~ 298 (414)
T 3oiy_A 237 SS-----------RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKI 298 (414)
T ss_dssp SS-----------CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSC
T ss_pred cc-----------CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCC
Confidence 32 1334455555552 37999999999999999999999999998 89984 444 999999999
Q ss_pred cEEEE----ecccccccCCCC-ccEEEEecCC--CCHhHHHHHhhccCCCC----CccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 317 RILVT----TDLAARGIDAAN-VDLVINLEIP--HDAATYLHRMGRAGRYG----TRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 317 dVLVS----TSALGEGLDLPa-VDTVIIyDSP--~SPqSYIQRIGRAGRiG----QkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
+|||| |+++++|||+|+ +++||+++.| .++..|+||+|||||.| ..|.+++|+ .+...+..+.+.+.
T Consensus 299 ~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 299 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp SEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred eEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99999 999999999999 9999999999 99999999999999987 478888888 56666666655544
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=396.24 Aligned_cols=345 Identities=19% Similarity=0.232 Sum_probs=218.0
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-CCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 33 RQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-VQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 33 LK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-~qggRVLILVPTRALAqQ~anwLR 111 (2355)
...+..+|+..|++||.+++++++.++++||++|||+|||++|+++++..+.... ...+++|||+|+++|+.||.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999999999999999998876432 223789999999999999999999
Q ss_pred HHhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcc-cCcCceEEEecccchhcccChHHHHH-HH
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYL-NMDSVRLFIMDEADKLINTGFVEDIT-WI 185 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~L-dLSkIdLLIVDEAHRLkN~GF~SrLe-eI 185 (2355)
+++... ++.+..++|+....... ..++|+|+||++|.+.+....+ .+..|++|||||||++.+...+..+. .+
T Consensus 83 ~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 83 KYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHTTTT-TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHhccC-CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 997654 78899999987543321 2479999999999999887766 68889999999999998665333332 22
Q ss_pred HHh-----CCCCceEEEEEeccC-------hhHHHHHHHhc---cCCeeeccCC-------------------Cccccc-
Q psy8497 186 YSQ-----LPPMKQMLVVSATYS-------HDNLATLQKYM---VDPLLIRPED-------------------ATRPLL- 230 (2355)
Q Consensus 186 Ls~-----LppnrQILLLSATLS-------~EILElLkKfL---rdPvIIrVes-------------------ee~~~s- 230 (2355)
+.. ..+..++|+||||+. ......+...+ ....+..... ......
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 222 245689999999997 33333332221 1111100000 000000
Q ss_pred ----------cceEEE------------------------------------EeccC-----------------------
Q psy8497 231 ----------GVKQLV------------------------------------ALIPE----------------------- 241 (2355)
Q Consensus 231 ----------eVrQvV------------------------------------vqVpe----------------------- 241 (2355)
.+..+. ...+.
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence 000000 00000
Q ss_pred --------------------------CCCCcc-----------------------hhhhHHHHHHHHHhcC----CCCeE
Q psy8497 242 --------------------------CKNPSL-----------------------RYVDEEKKLVQLLSQT----PFNQC 268 (2355)
Q Consensus 242 --------------------------~kn~sL-----------------------t~lsKkeaLLqLLerl----~kgRV 268 (2355)
...... ....+...|..++... ...++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 000000 0112344455555443 55799
Q ss_pred EEEEcccccHHHHHHHHHhcC----CccEEe--------eCCCCHHHHHHHHHHHhC-CCccEEEEecccccccCCCCcc
Q psy8497 269 VIFSNYQLRPEVICENLANAN----FGAEYL--------SGAQDQKARLASLDSFKR-GKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 269 LVFSQTRKmAEiLADyLrErG----IKVarL--------HGgMSqEERqeILErFRS-GEIdVLVSTSALGEGLDLPaVD 335 (2355)
||||+++..++.|+++|...+ +.+..+ ||+|+..+|..+++.|++ |+++|||||+++++|||+|+++
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999988 888888 559999999999999998 9999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 336 TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
+||+||+|+++..|+||+|| ||. +.+.+++++...+....+.+
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 99999999999999999999 997 78999999987766554433
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-39 Score=416.04 Aligned_cols=405 Identities=15% Similarity=0.122 Sum_probs=286.8
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
.|..+.+.+ +...+...+...|+++|.++++.+..++++||++|||+|||++|+++++..+. .++++|||+|+++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~----~g~rvlvl~Ptra 238 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----NKQRVIYTSPIKA 238 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH----TTCEEEEEESSHH
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh----cCCeEEEEcCcHH
Confidence 455555555 44455555666899999999999999999999999999999999999998876 3678999999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHH
Q psy8497 102 IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVED 181 (2355)
Q Consensus 102 LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~Sr 181 (2355)
|+.|+++.+.+++. .+.+++|+.... ..++|+|+||++|.+++......+..+++|||||||++.+.++...
T Consensus 239 La~Q~~~~l~~~~~-----~VglltGd~~~~---~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~ 310 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG-----DVGLMTGDITIN---PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVV 310 (1108)
T ss_dssp HHHHHHHHHHHHTS-----SEEEECSSCBCC---CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHH
T ss_pred HHHHHHHHHHHHhC-----CccEEeCccccC---CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHH
Confidence 99999999999864 467788887643 3478999999999999988777788999999999999999889999
Q ss_pred HHHHHHhCCCCceEEEEEeccChh--HHHHHHHhccCCeeeccCCCccccccceEEEEe---------ccCCCCC-----
Q psy8497 182 ITWIYSQLPPMKQMLVVSATYSHD--NLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL---------IPECKNP----- 245 (2355)
Q Consensus 182 LeeILs~LppnrQILLLSATLS~E--ILElLkKfLrdPvIIrVesee~~~seVrQvVvq---------Vpe~kn~----- 245 (2355)
+..++..++...|+|+||||++.. ....+...+..+..+....... ..+...+.. +......
T Consensus 311 ~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~ 388 (1108)
T 3l9o_A 311 WEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENF 388 (1108)
T ss_dssp HHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEETTTEECHHHH
T ss_pred HHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeeccccchhhhhH
Confidence 999999999999999999998764 2344555444444333222111 111221111 0000000
Q ss_pred ---------------------------------cchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCc-
Q psy8497 246 ---------------------------------SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFG- 291 (2355)
Q Consensus 246 ---------------------------------sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIK- 291 (2355)
..........++..+......++||||++++.++.++..|...++.
T Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~ 468 (1108)
T 3l9o_A 389 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNS 468 (1108)
T ss_dssp HHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHC
T ss_pred HHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCC
Confidence 0000223344555555566679999999999999999998654332
Q ss_pred --------------------------------------cEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 292 --------------------------------------AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 292 --------------------------------------VarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+
T Consensus 469 ~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~ 548 (1108)
T 3l9o_A 469 DDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPA 548 (1108)
T ss_dssp C----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCC
Confidence 789999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCC--------CHhHHHHHhhccCCCC--CccEEEEEEccc-CHHHHHHHHHhhccccccccCCCccchhhh
Q psy8497 334 VDLVINLEIPH--------DAATYLHRMGRAGRYG--TRGLVITIVSAE-SLVKFHSLMGEINLDHAFNVGLVPDNLTGD 402 (2355)
Q Consensus 334 VDTVIIyDSP~--------SPqSYIQRIGRAGRiG--QkGkVIVLVSsd-DVEeIEsLrReLKLKLaLe~eIVPkgLlKe 402 (2355)
+++||.++.++ ++.+|+||+|||||.| ..|.+|+++... ....+..+.......+.-.-.....+++..
T Consensus 549 v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnl 628 (1108)
T 3l9o_A 549 KTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 628 (1108)
T ss_dssp CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_pred ceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHHH
Confidence 99999766543 7778999999999999 678888888665 444455554322211111111111222222
Q ss_pred hhhHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHhhcC
Q psy8497 403 QINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKVENTK 441 (2355)
Q Consensus 403 qiDw~~~LERILKnPLdeeqErEELEQLeeElkKIEneL 441 (2355)
........+.++...+.+.+....+..+..+..++++.+
T Consensus 629 l~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~ 667 (1108)
T 3l9o_A 629 MRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDF 667 (1108)
T ss_dssp HHSTTCCHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 211111235566666666665555555555555555433
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=390.82 Aligned_cols=339 Identities=18% Similarity=0.241 Sum_probs=260.8
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPY-VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~-LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..+|+++.+++ +.+.+...||..|+++|.++++. +..++++||++|||+|||+++.++++..+.. .++++|||+|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~il~i~P 83 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK---NGGKAIYVTP 83 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---SCSEEEEECS
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 36799999888 99999999999999999999999 6788999999999999999999999988763 3679999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+++|+.|+.+.++.+. .. ++.+..++|+...... ....+|+|+||++|..++......+..+++|||||+|.+.+..
T Consensus 84 ~r~La~q~~~~~~~~~-~~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 84 LRALTNEKYLTFKDWE-LI-GFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp CHHHHHHHHHHHGGGG-GG-TCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred cHHHHHHHHHHHHHhh-cC-CCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 9999999999986553 23 7888888987654321 2358999999999998888766567899999999999998877
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEE-----------EeccCCCCCc
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV-----------ALIPECKNPS 246 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvV-----------vqVpe~kn~s 246 (2355)
+...+..++..++ ..|+|+||||+++. ..+..++..+. +...... ..+...+ ..+.......
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISNY--KQIAKWLGAEP-VATNWRP---VPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTTH--HHHHHHHTCEE-EECCCCS---SCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCCH--HHHHHHhCCCc-cCCCCCC---CCceEEEEecCCcccceeeecCcchhhh
Confidence 8888888887776 78999999999742 34444554322 1111111 1111111 1111100000
Q ss_pred ch-hhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC------------------------------------
Q psy8497 247 LR-YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN------------------------------------ 289 (2355)
Q Consensus 247 Lt-~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG------------------------------------ 289 (2355)
+. .......+..++. ..+++||||++++.++.++..|....
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 312 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLIS 312 (715)
T ss_dssp EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHh
Confidence 00 1123344444443 34799999999999999999998642
Q ss_pred CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ec-------CCCCHhHHHHHhhccCC
Q psy8497 290 FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LE-------IPHDAATYLHRMGRAGR 358 (2355)
Q Consensus 290 IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yD-------SP~SPqSYIQRIGRAGR 358 (2355)
..+.++||+|+..+|..+++.|++|.++|||||+++++|||+|++++||. || .|.++.+|+||+|||||
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGR 392 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCC
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCC
Confidence 35899999999999999999999999999999999999999999999998 88 78999999999999999
Q ss_pred CC--CccEEEEEEcccC
Q psy8497 359 YG--TRGLVITIVSAES 373 (2355)
Q Consensus 359 iG--QkGkVIVLVSsdD 373 (2355)
.| ..|.+++++...+
T Consensus 393 ~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 393 PGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTTCSCEEEEEECSCGG
T ss_pred CCCCCCceEEEEeCCch
Confidence 88 4788998887654
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=393.52 Aligned_cols=337 Identities=18% Similarity=0.251 Sum_probs=259.7
Q ss_pred CcccCC--cHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 23 ENDVLI--EKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 23 SFEeLl--Lkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
+|+++. +++ +.+.+...||..|+|+|.++++.++.++++||++|||+|||+++.++++..+.. ++++|||+|+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~ 77 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPL 77 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCc
Confidence 577777 777 999999999999999999999999999999999999999999999999988763 5789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
++|+.|+.+.++.+. .. ++.+..++|+..... ....++|+|+||++|..++......+..+++|||||+|.+.+.++
T Consensus 78 r~La~q~~~~~~~~~-~~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (702)
T 2p6r_A 78 RALAGEKYESFKKWE-KI-GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKR 155 (702)
T ss_dssp HHHHHHHHHHHTTTT-TT-TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTT
T ss_pred HHHHHHHHHHHHHHH-hc-CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCc
Confidence 999999999986553 23 788999999865443 234689999999999988887665578999999999999988777
Q ss_pred HHHHHHHHHhC---CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEe-----ccCCCCCcchhh
Q psy8497 179 VEDITWIYSQL---PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL-----IPECKNPSLRYV 250 (2355)
Q Consensus 179 ~SrLeeILs~L---ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvq-----Vpe~kn~sLt~l 250 (2355)
...+..++..+ .+..|+|+||||+++ ...+..++..+. +...... ..+...+.. +...........
T Consensus 156 ~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~~~-~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (702)
T 2p6r_A 156 GATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDADY-YVSDWRP---VPLVEGVLCEGTLELFDGAFSTSRRV 229 (702)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTCEE-EECCCCS---SCEEEEEECSSEEEEEETTEEEEEEC
T ss_pred ccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCCCc-ccCCCCC---ccceEEEeeCCeeeccCcchhhhhhh
Confidence 77776666554 568999999999984 344445554332 2211111 111111110 000000000011
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc------------------------------CCccEEeeCCCC
Q psy8497 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA------------------------------NFGAEYLSGAQD 300 (2355)
Q Consensus 251 sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr------------------------------GIKVarLHGgMS 300 (2355)
.....+.+.+. ..+++||||++++.++.++..|... +..+.++||+|+
T Consensus 230 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 230 KFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp CHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred hHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 13344445554 3479999999999999999988753 246889999999
Q ss_pred HHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ec---CCCCHhHHHHHhhccCCCC--CccEEEEEEcc
Q psy8497 301 QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LE---IPHDAATYLHRMGRAGRYG--TRGLVITIVSA 371 (2355)
Q Consensus 301 qEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yD---SP~SPqSYIQRIGRAGRiG--QkGkVIVLVSs 371 (2355)
..+|..+++.|++|.++|||||+++++|||+|++++||. || .|.++.+|+||+|||||.| ..|.+++++..
T Consensus 308 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 308 NGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 999999999999999999999999999999999999997 66 6889999999999999988 47889999887
Q ss_pred cC
Q psy8497 372 ES 373 (2355)
Q Consensus 372 dD 373 (2355)
.+
T Consensus 388 ~~ 389 (702)
T 2p6r_A 388 RD 389 (702)
T ss_dssp GG
T ss_pred cc
Confidence 66
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=393.92 Aligned_cols=338 Identities=17% Similarity=0.269 Sum_probs=265.3
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPY-VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~-LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
++|+++.+++ +.+.+...||..|+++|.++++. +..++++||++|||+|||+++.++++..+.. .++++|||+|+
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~~l~i~P~ 77 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT---QGGKAVYIVPL 77 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---HCSEEEEECSS
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCCEEEEEcCc
Confidence 3688888888 99999999999999999999998 7889999999999999999999999987763 26799999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
++|+.|+.+.++.+.. . ++.+..++|+...... ...++|+|+||++|..++......+..+++|||||+|.+.+..+
T Consensus 78 raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 78 KALAEEKFQEFQDWEK-I-GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GGGHHHHHHHTGGGGG-G-TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHHHHh-c-CCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 9999999999976543 2 7889999997654321 23589999999999888887666678999999999999998888
Q ss_pred HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEe-----ccCCCCCcchhhhHH
Q psy8497 179 VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL-----IPECKNPSLRYVDEE 253 (2355)
Q Consensus 179 ~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvq-----Vpe~kn~sLt~lsKk 253 (2355)
...+..++..++...|+|+||||+++. ..+..++.... +..... ...+...+.. +..... .......
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~r---p~~l~~~~~~~~~~~~~~~~~--~~~~~~~ 227 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGNP--EELAEWLNAEL-IVSDWR---PVKLRRGVFYQGFVTWEDGSI--DRFSSWE 227 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSCH--HHHHHHTTEEE-EECCCC---SSEEEEEEEETTEEEETTSCE--EECSSTT
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCCH--HHHHHHhCCcc-cCCCCC---CCcceEEEEeCCeeeccccch--hhhhHHH
Confidence 888988888887789999999999752 34444554221 111111 1111111110 111000 0001122
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc---------------------------------CCccEEeeCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA---------------------------------NFGAEYLSGAQD 300 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr---------------------------------GIKVarLHGgMS 300 (2355)
..+..++.. .+++||||++++.++.++..|... ...+.++||+|+
T Consensus 228 ~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~ 305 (720)
T 2zj8_A 228 ELVYDAIRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG 305 (720)
T ss_dssp HHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC
Confidence 334444443 479999999999999999998753 125899999999
Q ss_pred HHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ec----CCCCHhHHHHHhhccCCCC--CccEEEEEEc
Q psy8497 301 QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LE----IPHDAATYLHRMGRAGRYG--TRGLVITIVS 370 (2355)
Q Consensus 301 qEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yD----SP~SPqSYIQRIGRAGRiG--QkGkVIVLVS 370 (2355)
..+|..+++.|++|.++|||||+++++|||+|++++||. || .|.++.+|+||+|||||.| ..|.+++++.
T Consensus 306 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 306 RDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 999999999999999999999999999999999999997 66 5889999999999999988 4788999988
Q ss_pred ccCH
Q psy8497 371 AESL 374 (2355)
Q Consensus 371 sdDV 374 (2355)
..+.
T Consensus 386 ~~~~ 389 (720)
T 2zj8_A 386 SDDP 389 (720)
T ss_dssp SSCH
T ss_pred CccH
Confidence 7763
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=398.09 Aligned_cols=338 Identities=17% Similarity=0.230 Sum_probs=206.5
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-CCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 37 QENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-VQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 37 qa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
..+|+..|+|||.++++.++.++++||++|||+|||++|+++++..+.... ..++++|||||+++|+.||.+.+++++.
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 346788999999999999999999999999999999999999998887532 1277899999999999999999999986
Q ss_pred ccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcc-cCcCceEEEecccchhcccChHHHHH-HHHHh-
Q psy8497 116 HVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYL-NMDSVRLFIMDEADKLINTGFVEDIT-WIYSQ- 188 (2355)
Q Consensus 116 ~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~L-dLSkIdLLIVDEAHRLkN~GF~SrLe-eILs~- 188 (2355)
.. ++.+..++|+...... ...++|||+||++|...+....+ .+..|++|||||||++.+...+..+. .++..
T Consensus 322 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 322 RQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred cC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 65 7899999998854432 12489999999999998887766 68889999999999998776444332 22222
Q ss_pred ---CCCCceEEEEEeccChh----------HHHHHHHhccCCeeeccCCCcc----ccccceEEEEeccC----------
Q psy8497 189 ---LPPMKQMLVVSATYSHD----------NLATLQKYMVDPLLIRPEDATR----PLLGVKQLVALIPE---------- 241 (2355)
Q Consensus 189 ---LppnrQILLLSATLS~E----------ILElLkKfLrdPvIIrVesee~----~~seVrQvVvqVpe---------- 241 (2355)
..+..++|+||||+... ....+...+....+........ ...........+..
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 14568999999999631 1111222222111111110000 00000000000000
Q ss_pred -------------------------CCCCc------c-------------------------------------------
Q psy8497 242 -------------------------CKNPS------L------------------------------------------- 247 (2355)
Q Consensus 242 -------------------------~kn~s------L------------------------------------------- 247 (2355)
..... .
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00000 0
Q ss_pred -------------------------------------------------hhhhHHHHHHHHHhc----CCCCeEEEEEcc
Q psy8497 248 -------------------------------------------------RYVDEEKKLVQLLSQ----TPFNQCVIFSNY 274 (2355)
Q Consensus 248 -------------------------------------------------t~lsKkeaLLqLLer----l~kgRVLVFSQT 274 (2355)
....+...|..+|.. ....++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 001133344444443 556799999999
Q ss_pred cccHHHHHHHHHhc------------CCccEEeeCCCCHHHHHHHHHHHhC-CCccEEEEecccccccCCCCccEEEEec
Q psy8497 275 QLRPEVICENLANA------------NFGAEYLSGAQDQKARLASLDSFKR-GKVRILVTTDLAARGIDAANVDLVINLE 341 (2355)
Q Consensus 275 RKmAEiLADyLrEr------------GIKVarLHGgMSqEERqeILErFRS-GEIdVLVSTSALGEGLDLPaVDTVIIyD 341 (2355)
+.+++.|+++|... |..+..+||+|+..+|..+++.|++ |.++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5567778899999999999999999 9999999999999999999999999999
Q ss_pred CCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHH
Q psy8497 342 IPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377 (2355)
Q Consensus 342 SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeI 377 (2355)
+|+|+..|+||+|| ||. +++.+++|+...+....
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 99999999999999 997 88999999987766554
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=400.43 Aligned_cols=331 Identities=17% Similarity=0.195 Sum_probs=258.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 36 LQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 36 Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
...++| +|+++|.++++.+..++++||++|||+|||++++++++..+. .+.++|||+|+++|+.|+.+.+.+++.
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~----~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH----TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc----cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 344666 599999999999999999999999999999999999988775 367999999999999999999998864
Q ss_pred ccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceE
Q psy8497 116 HVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195 (2355)
Q Consensus 116 ~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQI 195 (2355)
.+.+++|+..... .++|+|+||++|..++......+..+++|||||+|++.+..+...+..++..++...|+
T Consensus 155 -----~vglltGd~~~~~---~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -----DVGLMTGDITINP---DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -----CEEEECSSCEECT---TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -----CEEEEeCCCccCC---CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 5778888876543 47899999999999888777778999999999999999998889999999999999999
Q ss_pred EEEEeccChhHH--HHHHHhccCCeeeccCCCccccccceEEEEecc--------CCCCCcc------------------
Q psy8497 196 LVVSATYSHDNL--ATLQKYMVDPLLIRPEDATRPLLGVKQLVALIP--------ECKNPSL------------------ 247 (2355)
Q Consensus 196 LLLSATLS~EIL--ElLkKfLrdPvIIrVesee~~~seVrQvVvqVp--------e~kn~sL------------------ 247 (2355)
|+||||++.... ..+......+..+...... ...+.+.+.... .......
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDD 304 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccc
Confidence 999999986432 2333333334333222211 112222222111 0000000
Q ss_pred --------------hh-------hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC----------------
Q psy8497 248 --------------RY-------VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF---------------- 290 (2355)
Q Consensus 248 --------------t~-------lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGI---------------- 290 (2355)
.. ......++..+......++||||++++.++.++..|...++
T Consensus 305 ~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 384 (1010)
T 2xgj_A 305 PNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 384 (1010)
T ss_dssp ------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 00 11223455555554556999999999999999999876443
Q ss_pred -----------------------ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ecC-
Q psy8497 291 -----------------------GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LEI- 342 (2355)
Q Consensus 291 -----------------------KVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yDS- 342 (2355)
++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||. ||.
T Consensus 385 ~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~ 464 (1010)
T 2xgj_A 385 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 464 (1010)
T ss_dssp HTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSS
T ss_pred HHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCc
Confidence 2789999999999999999999999999999999999999999999998 998
Q ss_pred ---CCCHhHHHHHhhccCCCCC--ccEEEEEEccc-CHHHHHHHH
Q psy8497 343 ---PHDAATYLHRMGRAGRYGT--RGLVITIVSAE-SLVKFHSLM 381 (2355)
Q Consensus 343 ---P~SPqSYIQRIGRAGRiGQ--kGkVIVLVSsd-DVEeIEsLr 381 (2355)
|+++.+|+||+|||||.|+ .|.||+++... +...+..++
T Consensus 465 ~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 465 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp CEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred CCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 8999999999999999996 58999998765 555555553
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=389.98 Aligned_cols=327 Identities=17% Similarity=0.223 Sum_probs=222.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC--CCCCeEEEEcccHHHHHHH-HHHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP--VQQPQTIILAPTREIAVQI-TDVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr--~qggRVLILVPTRALAqQ~-anwLREFgk~APg 119 (2355)
.|+|||.+++++++.++++||++|||+|||++|+++++..+.... ...+++|||+|+++|+.|| .+.+++++.. .
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--~ 84 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--W 84 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--T
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--C
Confidence 899999999999999999999999999999999999998776421 2237899999999999999 9999998754 3
Q ss_pred cEEEEEECCccccCCC----CCCcEEEECHHHHHHHH------HhhcccCcCceEEEecccchhcccChHHHHHH-HHHh
Q psy8497 120 LHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMI------KLKYLNMDSVRLFIMDEADKLINTGFVEDITW-IYSQ 188 (2355)
Q Consensus 120 LrVVvytGGkq~rkqi----rq~DILVTTPErLLDLL------drr~LdLSkIdLLIVDEAHRLkN~GF~SrLee-ILs~ 188 (2355)
+.+..++|+....... ...+|||+||++|...+ ....+.+..|++|||||||++....++..+.. ++..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 7899999987654321 34899999999998877 45556788999999999999865443222222 2211
Q ss_pred ----C---------CCCceEEEEEeccChh-------HHHHHH---HhccCCeeeccCCCcc----ccccceEEEEeccC
Q psy8497 189 ----L---------PPMKQMLVVSATYSHD-------NLATLQ---KYMVDPLLIRPEDATR----PLLGVKQLVALIPE 241 (2355)
Q Consensus 189 ----L---------ppnrQILLLSATLS~E-------ILElLk---KfLrdPvIIrVesee~----~~seVrQvVvqVpe 241 (2355)
. .+.+++|+||||+... ....+. ..+....+........ ........+..+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 1 1567999999999962 222111 1222211111110000 00000001111100
Q ss_pred CCC------------------------Cc---------------------------------------------------
Q psy8497 242 CKN------------------------PS--------------------------------------------------- 246 (2355)
Q Consensus 242 ~kn------------------------~s--------------------------------------------------- 246 (2355)
... ..
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00
Q ss_pred --------------------------------------------------------chhhhHHHHHHHHHhcCC-CCeEE
Q psy8497 247 --------------------------------------------------------LRYVDEEKKLVQLLSQTP-FNQCV 269 (2355)
Q Consensus 247 --------------------------------------------------------Lt~lsKkeaLLqLLerl~-kgRVL 269 (2355)
.........|...+.... ..++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 000000112222233323 57999
Q ss_pred EEEcccccHHHHHHHHHhc------CCccEEeeCC--------CCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 270 IFSNYQLRPEVICENLANA------NFGAEYLSGA--------QDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 270 VFSQTRKmAEiLADyLrEr------GIKVarLHGg--------MSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
|||+++.+++.|+++|... |+.+..+||+ |+..+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccC
Q psy8497 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373 (2355)
Q Consensus 336 TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdD 373 (2355)
+||+||+|+|+..|+||+|||+|.| +.++++....+
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 9999999999999999999987755 44455554443
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=395.22 Aligned_cols=341 Identities=17% Similarity=0.222 Sum_probs=205.6
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-CCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-VQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 34 K~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
....-.|+..|++||.+++++++.++++||++|||+|||++++++++..+.... ..++++|||+|+++|+.||.+.+++
T Consensus 239 ~~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 239 KPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ---------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 333345678999999999999999999999999999999999999987766421 1267899999999999999999999
Q ss_pred HhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcc-cCcCceEEEecccchhcccChHHHHH-HHH
Q psy8497 113 VGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYL-NMDSVRLFIMDEADKLINTGFVEDIT-WIY 186 (2355)
Q Consensus 113 Fgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~L-dLSkIdLLIVDEAHRLkN~GF~SrLe-eIL 186 (2355)
++... ++.+..++|+....... ..++|||+||++|.+.+....+ .+..+++|||||||++.+...+..+. .++
T Consensus 319 ~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~ 397 (936)
T 4a2w_A 319 HFERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (936)
T ss_dssp HHHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred Hhccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHH
Confidence 87655 78999999988554332 2379999999999998887666 67889999999999998775433332 222
Q ss_pred Hh----CCCCceEEEEEeccChh----------HHHHHHHhccCCeeeccCCCcc----ccccceEEEEecc--------
Q psy8497 187 SQ----LPPMKQMLVVSATYSHD----------NLATLQKYMVDPLLIRPEDATR----PLLGVKQLVALIP-------- 240 (2355)
Q Consensus 187 s~----LppnrQILLLSATLS~E----------ILElLkKfLrdPvIIrVesee~----~~seVrQvVvqVp-------- 240 (2355)
.. ..+..++|+||||+... ....+...+....+........ ...........+.
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 22 14568999999999531 1111112222111111110000 0000000000000
Q ss_pred ---------------------------CCCCCc-----------------------------------------------
Q psy8497 241 ---------------------------ECKNPS----------------------------------------------- 246 (2355)
Q Consensus 241 ---------------------------e~kn~s----------------------------------------------- 246 (2355)
......
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~ 557 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 000000
Q ss_pred ---------------------------------------------------chhhhHHHHHHHHHhc----CCCCeEEEE
Q psy8497 247 ---------------------------------------------------LRYVDEEKKLVQLLSQ----TPFNQCVIF 271 (2355)
Q Consensus 247 ---------------------------------------------------Lt~lsKkeaLLqLLer----l~kgRVLVF 271 (2355)
.....+...|..+|.. ....++|||
T Consensus 558 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF 637 (936)
T 4a2w_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (936)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEE
T ss_pred hhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 0001123344455543 345799999
Q ss_pred EcccccHHHHHHHHHhc------------CCccEEeeCCCCHHHHHHHHHHHhC-CCccEEEEecccccccCCCCccEEE
Q psy8497 272 SNYQLRPEVICENLANA------------NFGAEYLSGAQDQKARLASLDSFKR-GKVRILVTTDLAARGIDAANVDLVI 338 (2355)
Q Consensus 272 SQTRKmAEiLADyLrEr------------GIKVarLHGgMSqEERqeILErFRS-GEIdVLVSTSALGEGLDLPaVDTVI 338 (2355)
|+++++++.|+++|... |..+..+||+|+..+|..+++.|++ |.++|||||+++++|||+|.|++||
T Consensus 638 ~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI 717 (936)
T 4a2w_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (936)
T ss_dssp ESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEE
T ss_pred eCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEE
Confidence 99999999999999986 5556667888999999999999999 9999999999999999999999999
Q ss_pred EecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHH
Q psy8497 339 NLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377 (2355)
Q Consensus 339 IyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeI 377 (2355)
+||+|+|+..|+||+|| ||. ..+.+++|+...+....
T Consensus 718 ~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee~ 754 (936)
T 4a2w_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (936)
T ss_dssp EESCCSCSHHHHCC---------CCCEEEEESCHHHHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHHH
Confidence 99999999999999999 997 78899999877766543
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=388.91 Aligned_cols=329 Identities=17% Similarity=0.191 Sum_probs=251.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
++| +|+++|.++++.++.++++||++|||+|||++|+++++..+. .+.++|||+|+++|+.|+.+.+.+++ +
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~----~g~~vlvl~PtraLa~Q~~~~l~~~~---~ 107 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR----NMTKTIYTSPIKALSNQKFRDFKETF---D 107 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH----TTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHHc---C
Confidence 555 699999999999999999999999999999999988887665 36789999999999999999998864 3
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
++.+..++|+..... ..+|+|+||++|.+++......+..+++|||||||++.++++...+..++..+++..|+|+|
T Consensus 108 ~~~v~~l~G~~~~~~---~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlL 184 (997)
T 4a4z_A 108 DVNIGLITGDVQINP---DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILL 184 (997)
T ss_dssp -CCEEEECSSCEECT---TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEE
T ss_pred CCeEEEEeCCCccCC---CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEE
Confidence 678889999876543 37899999999999988877778899999999999999999889999999999999999999
Q ss_pred EeccChhHHHHHHHh---ccCCeeeccCCCccccccceEEE-------EeccCCCC------------------------
Q psy8497 199 SATYSHDNLATLQKY---MVDPLLIRPEDATRPLLGVKQLV-------ALIPECKN------------------------ 244 (2355)
Q Consensus 199 SATLS~EILElLkKf---LrdPvIIrVesee~~~seVrQvV-------vqVpe~kn------------------------ 244 (2355)
|||++... ++...+ ...+..+...... ..++...+ ..+.....
T Consensus 185 SAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (997)
T 4a4z_A 185 SATVPNTY-EFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSK 261 (997)
T ss_dssp ECCCTTHH-HHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------
T ss_pred cCCCCChH-HHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccc
Confidence 99987543 222221 1122222111111 11111111 00000000
Q ss_pred ------------------------------------------------------CcchhhhHHHHHHHHHhcCCCCeEEE
Q psy8497 245 ------------------------------------------------------PSLRYVDEEKKLVQLLSQTPFNQCVI 270 (2355)
Q Consensus 245 ------------------------------------------------------~sLt~lsKkeaLLqLLerl~kgRVLV 270 (2355)
...........|+..+......++||
T Consensus 262 ~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IV 341 (997)
T 4a4z_A 262 TDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVV 341 (997)
T ss_dssp -------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEE
Confidence 00001123456777777777779999
Q ss_pred EEcccccHHHHHHHHHhcCC---------------------------------------ccEEeeCCCCHHHHHHHHHHH
Q psy8497 271 FSNYQLRPEVICENLANANF---------------------------------------GAEYLSGAQDQKARLASLDSF 311 (2355)
Q Consensus 271 FSQTRKmAEiLADyLrErGI---------------------------------------KVarLHGgMSqEERqeILErF 311 (2355)
||.+++.++.++..|...++ ++..+||+|++.+|..+++.|
T Consensus 342 F~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F 421 (997)
T 4a4z_A 342 FVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILF 421 (997)
T ss_dssp ECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHH
Confidence 99999999999999977655 579999999999999999999
Q ss_pred hCCCccEEEEecccccccCCCCccEEEEecCCC---------CHhHHHHHhhccCCCC--CccEEEEEEc--ccCHHHHH
Q psy8497 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPH---------DAATYLHRMGRAGRYG--TRGLVITIVS--AESLVKFH 378 (2355)
Q Consensus 312 RSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~---------SPqSYIQRIGRAGRiG--QkGkVIVLVS--sdDVEeIE 378 (2355)
+.|.++|||||+++++|||+|+ .+||+++.+. ++.+|+|++|||||.| ..|.||+++. ..+...+.
T Consensus 422 ~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 422 SKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp HTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred HCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHH
Confidence 9999999999999999999999 5555555544 9999999999999988 5677777773 34555566
Q ss_pred HHHH
Q psy8497 379 SLMG 382 (2355)
Q Consensus 379 sLrR 382 (2355)
.++.
T Consensus 501 ~~i~ 504 (997)
T 4a4z_A 501 EVTM 504 (997)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=356.17 Aligned_cols=321 Identities=15% Similarity=0.240 Sum_probs=223.6
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
.|+|||.++++|+. .+.++||+++||+|||++++..+..... .....++|||||+ .|+.||.+.++++. |
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~--~~~~~~~LIv~P~-~l~~qw~~e~~~~~---~ 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK--ENELTPSLVICPL-SVLKNWEEELSKFA---P 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH--TTCCSSEEEEECS-TTHHHHHHHHHHHC---T
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh--cCCCCCEEEEccH-HHHHHHHHHHHHHC---C
Confidence 79999999999984 4678999999999999887655544333 2345689999996 58888888888774 5
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
.+.+.++.|+.. ......++|+|+||++|..... +....|++|||||||++.+.. ......+..++ ..++++|
T Consensus 111 ~~~v~~~~g~~~-~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l~L 183 (500)
T 1z63_A 111 HLRFAVFHEDRS-KIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRIAL 183 (500)
T ss_dssp TSCEEECSSSTT-SCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEEEE
T ss_pred CceEEEEecCch-hccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEEEE
Confidence 677888777663 2233458999999999865443 345678999999999998765 34455566664 5678999
Q ss_pred EeccChhHHHHHHH---h---------------------------------ccCCeeeccCCCc----cccccceEEEEe
Q psy8497 199 SATYSHDNLATLQK---Y---------------------------------MVDPLLIRPEDAT----RPLLGVKQLVAL 238 (2355)
Q Consensus 199 SATLS~EILElLkK---f---------------------------------LrdPvIIrVesee----~~~seVrQvVvq 238 (2355)
||||..+....+.. + +..++.++..... ............
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~ 263 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVY 263 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEE
Confidence 99997543222111 0 1123333222111 011111222222
Q ss_pred ccCCCCC-------------------------------------------------cchhhhHHHHHHHHHhcC--CCCe
Q psy8497 239 IPECKNP-------------------------------------------------SLRYVDEEKKLVQLLSQT--PFNQ 267 (2355)
Q Consensus 239 Vpe~kn~-------------------------------------------------sLt~lsKkeaLLqLLerl--~kgR 267 (2355)
++..... ......+...+.+++... ...+
T Consensus 264 ~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k 343 (500)
T 1z63_A 264 CNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDK 343 (500)
T ss_dssp ECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCc
Confidence 2111000 000112333344444332 4569
Q ss_pred EEEEEcccccHHHHHHHHHhc-CCccEEeeCCCCHHHHHHHHHHHhCC-Ccc-EEEEecccccccCCCCccEEEEecCCC
Q psy8497 268 CVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRG-KVR-ILVTTDLAARGIDAANVDLVINLEIPH 344 (2355)
Q Consensus 268 VLVFSQTRKmAEiLADyLrEr-GIKVarLHGgMSqEERqeILErFRSG-EId-VLVSTSALGEGLDLPaVDTVIIyDSP~ 344 (2355)
+||||+++.+++.|...|... ++.+.++||+|+..+|..+++.|+++ .+. |||+|.++++|||+|.+++||++|+||
T Consensus 344 ~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~ 423 (500)
T 1z63_A 344 IAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWW 423 (500)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCS
T ss_pred EEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCC
Confidence 999999999999999999985 99999999999999999999999988 555 799999999999999999999999999
Q ss_pred CHhHHHHHhhccCCCCCccEE--EEEEcccCHHH
Q psy8497 345 DAATYLHRMGRAGRYGTRGLV--ITIVSAESLVK 376 (2355)
Q Consensus 345 SPqSYIQRIGRAGRiGQkGkV--IVLVSsdDVEe 376 (2355)
|+..++|++||++|.|+...| +.|+...+.+.
T Consensus 424 ~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 424 NPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp CC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred CcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 999999999999999976554 55556665543
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=358.66 Aligned_cols=310 Identities=17% Similarity=0.169 Sum_probs=228.5
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
.+|+++|.++++.++.++++||++|||+|||++++++++..+.. ..+++|||||+++|+.||.+.+.++... +.+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---~~~~vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQMADDFVDYRLF-SHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH---CSSEEEEEESSHHHHHHHHHHHHHTTSS-CGGG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC---CCCeEEEEECcHHHHHHHHHHHHHhhcC-Cccc
Confidence 38999999999999999999999999999999999888877653 3459999999999999999999888543 3677
Q ss_pred EEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 122 VDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 122 VVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
+..+.|+..... .....+|+|+||+.|... ....+..+++|||||+|++.. ..+..++..+....++|+|||
T Consensus 188 v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp EEECGGGCCTTGGGCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEES
T ss_pred eEEEecCCccccccccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEe
Confidence 888877754432 123489999999976432 224467899999999999875 446667778877889999999
Q ss_pred ccChhHHHHHH-HhccCCeeeccCCCcc----cc--ccceEEEEeccCCC------CCcch---h----hhHHHHHHHHH
Q psy8497 201 TYSHDNLATLQ-KYMVDPLLIRPEDATR----PL--LGVKQLVALIPECK------NPSLR---Y----VDEEKKLVQLL 260 (2355)
Q Consensus 201 TLS~EILElLk-KfLrdPvIIrVesee~----~~--seVrQvVvqVpe~k------n~sLt---~----lsKkeaLLqLL 260 (2355)
||+......+. ..+..+..+....... .. ..+......++... ..... . ..+...+..++
T Consensus 261 Tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 340 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLA 340 (510)
T ss_dssp CGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHH
Confidence 99765322211 1223333333222110 01 11111111111100 00000 0 01122333333
Q ss_pred hcC---CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCccE
Q psy8497 261 SQT---PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT-DLAARGIDAANVDL 336 (2355)
Q Consensus 261 erl---~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST-SALGEGLDLPaVDT 336 (2355)
... ...++|||+. ++.++.|++.|...+..+.++||+|+..+|..+++.|++|+++||||| +++++|||+|.+++
T Consensus 341 ~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~ 419 (510)
T 2oca_A 341 IKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHH 419 (510)
T ss_dssp HHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEE
T ss_pred HHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcE
Confidence 322 3446677776 888999999999998899999999999999999999999999999999 99999999999999
Q ss_pred EEEecCCCCHhHHHHHhhccCCCCCcc
Q psy8497 337 VINLEIPHDAATYLHRMGRAGRYGTRG 363 (2355)
Q Consensus 337 VIIyDSP~SPqSYIQRIGRAGRiGQkG 363 (2355)
||+++.|+++..|+|++||+||.|+.+
T Consensus 420 vi~~~~~~s~~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 420 VVLAHGVKSKIIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp EEESSCCCSCCHHHHHHHHHHTTTCCC
T ss_pred EEEeCCCCCHHHHHHHHhcccccCCCC
Confidence 999999999999999999999999776
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=352.24 Aligned_cols=304 Identities=18% Similarity=0.210 Sum_probs=220.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE-
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH- 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr- 121 (2355)
.|+|+|.++++.++.+.++||++|||+|||++++.++... +.++|||||+++|+.||.+.+.+| ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF-----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG-----CGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC-----CCcc
Confidence 6899999999999999899999999999999998877643 568999999999999999998884 566
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
+.++.|+... ..+|+|+||+.|...+.. + ...|++|||||+|++.+..+.. ++..+ ...++|+||||
T Consensus 161 v~~~~g~~~~-----~~~Ivv~T~~~l~~~~~~--~-~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSAT 227 (472)
T 2fwr_A 161 VGEFSGRIKE-----LKPLTVSTYDSAYVNAEK--L-GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTAT 227 (472)
T ss_dssp EEEBSSSCBC-----CCSEEEEEHHHHHHTHHH--H-TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESC
T ss_pred eEEECCCcCC-----cCCEEEEEcHHHHHHHHH--h-cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEecC
Confidence 7888777643 367999999998665532 1 2458899999999999877643 44444 46789999999
Q ss_pred cChhHH--HHHHHhccCCeeeccCCCcc---ccccce--EEEEec----------------------------cCCCCCc
Q psy8497 202 YSHDNL--ATLQKYMVDPLLIRPEDATR---PLLGVK--QLVALI----------------------------PECKNPS 246 (2355)
Q Consensus 202 LS~EIL--ElLkKfLrdPvIIrVesee~---~~seVr--QvVvqV----------------------------pe~kn~s 246 (2355)
|..... ..+..+ ..+.......... ...... .+...+ .......
T Consensus 228 p~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 306 (472)
T 2fwr_A 228 FEREDGRHEILKEV-VGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKI 306 (472)
T ss_dssp CCCTTSGGGSHHHH-TCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTT
T ss_pred ccCCCCHHHHHHHH-hCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHH
Confidence 973211 011111 1111111100000 000000 000000 0000000
Q ss_pred ------------------------chhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHH
Q psy8497 247 ------------------------LRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302 (2355)
Q Consensus 247 ------------------------Lt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqE 302 (2355)
.....+...|..++......++||||+++..++.+++.|. +..+||+++..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~ 381 (472)
T 2fwr_A 307 VMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSRE 381 (472)
T ss_dssp TTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHH
Confidence 0011344667777777777899999999999999999874 56799999999
Q ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCc---cEEEEEEcccCHHHH
Q psy8497 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR---GLVITIVSAESLVKF 377 (2355)
Q Consensus 303 ERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQk---GkVIVLVSsdDVEeI 377 (2355)
+|..+++.|++|+++|||||+++++|||+|.+++||+++.|+++..|+|++|||||.|+. +.++.|+...+.++.
T Consensus 382 ~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~ 459 (472)
T 2fwr_A 382 EREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVN 459 (472)
T ss_dssp HHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---
T ss_pred HHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHH
Confidence 999999999999999999999999999999999999999999999999999999999854 345556666555543
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=375.20 Aligned_cols=325 Identities=18% Similarity=0.256 Sum_probs=228.2
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|+|||.++++||+ .+.++||+++||+|||++++..+...+. .....+++|||||. .|+.||.+.+.++ +
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~-~~~~~~~~LIV~P~-sll~qW~~E~~~~---~ 309 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIF-ARRQNGPHIIVVPL-STMPAWLDTFEKW---A 309 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHH-HHSCCSCEEEECCT-TTHHHHHHHHHHH---S
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHH-hcCCCCCEEEEECc-hHHHHHHHHHHHH---C
Confidence 389999999999987 6788999999999999887655544332 23456789999995 5667766666655 5
Q ss_pred CCcEEEEEECCcccc----------------CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHH
Q psy8497 118 KNLHVDYFIGGTQVE----------------RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVED 181 (2355)
Q Consensus 118 PgLrVVvytGGkq~r----------------kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~Sr 181 (2355)
|.+.++++.|....+ .....++|+|+||+++..... .+....|++|||||||++++.. ..
T Consensus 310 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~~--s~ 385 (800)
T 3mwy_W 310 PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNAE--SS 385 (800)
T ss_dssp TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCSS--SH
T ss_pred CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCch--hH
Confidence 788999999876432 123348999999999865432 3344578999999999998765 45
Q ss_pred HHHHHHhCCCCceEEEEEeccChhHHHHHHH---hc------------------------------cCCeeeccCCCcc-
Q psy8497 182 ITWIYSQLPPMKQMLVVSATYSHDNLATLQK---YM------------------------------VDPLLIRPEDATR- 227 (2355)
Q Consensus 182 LeeILs~LppnrQILLLSATLS~EILElLkK---fL------------------------------rdPvIIrVesee~- 227 (2355)
+...+..+. ....|+|||||..+....+.. ++ ..+++++......
T Consensus 386 ~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~ 464 (800)
T 3mwy_W 386 LYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVE 464 (800)
T ss_dssp HHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGT
T ss_pred HHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhh
Confidence 555666663 456789999995432222111 11 1112221111110
Q ss_pred -ccccceEEEEeccCCCC----------------------------------------Cc--------------------
Q psy8497 228 -PLLGVKQLVALIPECKN----------------------------------------PS-------------------- 246 (2355)
Q Consensus 228 -~~seVrQvVvqVpe~kn----------------------------------------~s-------------------- 246 (2355)
...........++.... +.
T Consensus 465 ~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 465 KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCS
T ss_pred hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccH
Confidence 01111111221111000 00
Q ss_pred -------chhhhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCc-
Q psy8497 247 -------LRYVDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV- 316 (2355)
Q Consensus 247 -------Lt~lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEI- 316 (2355)
.....+...|..+|... .+++|||||+++.+++.|.++|...|+.+.+|||+++..+|..+++.|+++..
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 00112334455555432 35699999999999999999999999999999999999999999999998544
Q ss_pred --cEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCcc--EEEEEEcccCHHH
Q psy8497 317 --RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG--LVITIVSAESLVK 376 (2355)
Q Consensus 317 --dVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkG--kVIVLVSsdDVEe 376 (2355)
.|||+|.++++||||+.+++||+||+||||..++||+||++|+|+.. .|+.|+...+++.
T Consensus 625 ~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 625 DFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp CCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred ceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 59999999999999999999999999999999999999999999765 4555566665544
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=392.65 Aligned_cols=344 Identities=16% Similarity=0.206 Sum_probs=252.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
..+.++..+|..|+|+|.++++.++. +.+++|++|||+|||+++.++|+..|.+ ..+.++|||+|+++|+.|..+.+
T Consensus 915 ~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~--~~~~kavyi~P~raLa~q~~~~~ 992 (1724)
T 4f92_B 915 AFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ--SSEGRCVYITPMEALAEQVYMDW 992 (1724)
T ss_dssp HHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh--CCCCEEEEEcChHHHHHHHHHHH
Confidence 67777888999999999999999986 5679999999999999999999999875 34678999999999999999888
Q ss_pred HHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccChHHHHHHHH-
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGFVEDITWIY- 186 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeIL- 186 (2355)
.+.+....+++|..++|+..... ....++|||||||+|..++.. ....+..+++|||||+|+|.+. ++..+..++
T Consensus 993 ~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~ 1071 (1724)
T 4f92_B 993 YEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICS 1071 (1724)
T ss_dssp HHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHH
T ss_pred HHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHHH
Confidence 76444434889999999875432 123478999999999776653 2223678999999999988764 444443333
Q ss_pred ------HhCCCCceEEEEEeccChhHHHHHHHhccC-C-eeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHH
Q psy8497 187 ------SQLPPMKQMLVVSATYSHDNLATLQKYMVD-P-LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ 258 (2355)
Q Consensus 187 ------s~LppnrQILLLSATLS~EILElLkKfLrd-P-vIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLq 258 (2355)
..++...|+|+||||+++. ..+..|+.. . ..+..... ..+..+...+....... ...........+..
T Consensus 1072 rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~-~~~~~~~~~~~~~~ 1147 (1724)
T 4f92_B 1072 RMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISH-TQTRLLSMAKPVYH 1147 (1724)
T ss_dssp HHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCS-HHHHHHTTHHHHHH
T ss_pred HHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCC-chhhhhhhcchHHH
Confidence 4456789999999999842 334444432 1 11111111 12223333333222221 11111111122222
Q ss_pred -HHhcCCCCeEEEEEcccccHHHHHHHHHhc----------------------------------CCccEEeeCCCCHHH
Q psy8497 259 -LLSQTPFNQCVIFSNYQLRPEVICENLANA----------------------------------NFGAEYLSGAQDQKA 303 (2355)
Q Consensus 259 -LLerl~kgRVLVFSQTRKmAEiLADyLrEr----------------------------------GIKVarLHGgMSqEE 303 (2355)
+.......++||||++++.++.++..|... ..+++++|++|+..+
T Consensus 1148 ~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~ 1227 (1724)
T 4f92_B 1148 AITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPME 1227 (1724)
T ss_dssp HHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHH
T ss_pred HHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHH
Confidence 233445579999999999998887766421 246899999999999
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ec------CCCCHhHHHHHhhccCCCCC--ccEEEEEEcc
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LE------IPHDAATYLHRMGRAGRYGT--RGLVITIVSA 371 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yD------SP~SPqSYIQRIGRAGRiGQ--kGkVIVLVSs 371 (2355)
|..+++.|++|.++|||||+++++|||+|+..+||. || .|.++.+|+||+|||||.|. .|.+++++..
T Consensus 1228 R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~ 1307 (1724)
T 4f92_B 1228 RRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQG 1307 (1724)
T ss_dssp HHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEG
T ss_pred HHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecc
Confidence 999999999999999999999999999999888882 22 35789999999999999986 6899999988
Q ss_pred cCHHHHHHHHH
Q psy8497 372 ESLVKFHSLMG 382 (2355)
Q Consensus 372 dDVEeIEsLrR 382 (2355)
.+...++.++.
T Consensus 1308 ~~~~~~~~ll~ 1318 (1724)
T 4f92_B 1308 SKKDFFKKFLY 1318 (1724)
T ss_dssp GGHHHHHHHTT
T ss_pred hHHHHHHHHhC
Confidence 88877777654
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=391.34 Aligned_cols=336 Identities=20% Similarity=0.246 Sum_probs=250.4
Q ss_pred CCCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcC-------CCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 40 GFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLP-------VQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr-------~qggRVLILVPTRALAqQ~anwLR 111 (2355)
||.+|+++|.++++.++. ++|+||+||||+|||+++.++++..|.+.. ..+.++|||+|+++|+.|+.+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999885 689999999999999999999999987421 346789999999999999999999
Q ss_pred HHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhc--ccCcCceEEEecccchhcccChHHHHHHHHH-
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKY--LNMDSVRLFIMDEADKLINTGFVEDITWIYS- 187 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~--LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs- 187 (2355)
+.+... +++|..++|+..... ....++|+|||||++..++.... ..+..+++|||||+|.|.+ .++..++.++.
T Consensus 156 ~~~~~~-gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~r 233 (1724)
T 4f92_B 156 KRLATY-GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVAR 233 (1724)
T ss_dssp HHHTTT-TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHH
T ss_pred HHHhhC-CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHH
Confidence 887776 899999999876543 33458999999999865554321 1357899999999997765 45555554443
Q ss_pred ------hCCCCceEEEEEeccChhHHHHHHHhccCCe---eeccCCCccccccceEEEEeccCCCCCcchhhh-HHHHHH
Q psy8497 188 ------QLPPMKQMLVVSATYSHDNLATLQKYMVDPL---LIRPEDATRPLLGVKQLVALIPECKNPSLRYVD-EEKKLV 257 (2355)
Q Consensus 188 ------~LppnrQILLLSATLS~EILElLkKfLrdPv---IIrVesee~~~seVrQvVvqVpe~kn~sLt~ls-KkeaLL 257 (2355)
.++...|+|+||||+++ ...+..|+.... ...+.. ...+..+.+.+..+.... ...... ....+.
T Consensus 234 l~~~~~~~~~~~riI~LSATl~N--~~dvA~wL~~~~~~~~~~~~~-~~RPvpL~~~~~~~~~~~--~~~~~~~~~~~~~ 308 (1724)
T 4f92_B 234 AIRNIEMTQEDVRLIGLSATLPN--YEDVATFLRVDPAKGLFYFDN-SFRPVPLEQTYVGITEKK--AIKRFQIMNEIVY 308 (1724)
T ss_dssp HHHHHHHHTCCCEEEEEECSCTT--HHHHHHHTTCCHHHHEEECCG-GGCSSCEEEECCEECCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcEEEEecccCC--HHHHHHHhCCCCCCCeEEECC-CCccCccEEEEeccCCcc--hhhhhHHHHHHHH
Confidence 45678999999999984 334555554320 111111 112223333332222221 111111 112233
Q ss_pred HHH-hcCCCCeEEEEEcccccHHHHHHHHHhc-------------------------------------CCccEEeeCCC
Q psy8497 258 QLL-SQTPFNQCVIFSNYQLRPEVICENLANA-------------------------------------NFGAEYLSGAQ 299 (2355)
Q Consensus 258 qLL-erl~kgRVLVFSQTRKmAEiLADyLrEr-------------------------------------GIKVarLHGgM 299 (2355)
..+ .....+++||||++++.++.++..|.+. ..+++++||+|
T Consensus 309 ~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 309 EKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 333 3344569999999999999988887641 24588999999
Q ss_pred CHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ecC------CCCHhHHHHHhhccCCCC--CccEEEE
Q psy8497 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LEI------PHDAATYLHRMGRAGRYG--TRGLVIT 367 (2355)
Q Consensus 300 SqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yDS------P~SPqSYIQRIGRAGRiG--QkGkVIV 367 (2355)
+..+|..+++.|++|.++|||||+++++|||+|++++||. |+. |.++.+|+||+|||||.| ..|.+|+
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 9999999999999999999999999999999999999984 443 468999999999999987 4688999
Q ss_pred EEcccCHHHHHHHHH
Q psy8497 368 IVSAESLVKFHSLMG 382 (2355)
Q Consensus 368 LVSsdDVEeIEsLrR 382 (2355)
++...+...+..++.
T Consensus 469 ~~~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 469 ITSHGELQYYLSLLN 483 (1724)
T ss_dssp EEESTTCCHHHHHTT
T ss_pred EecchhHHHHHHHHc
Confidence 988887777666654
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-35 Score=376.56 Aligned_cols=323 Identities=19% Similarity=0.226 Sum_probs=249.2
Q ss_pred HHHHHH-HCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQ-ENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lq-a~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+.+.+. .+|| +|+|+|.++++.++.++++|+++|||+|||++++++++..+. .++++|||+|+++|+.|+.+.+
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHHHH
Confidence 344443 3788 799999999999999999999999999999988888776653 4778999999999999999999
Q ss_pred HHHhcccCCcEEEEEECCccccC-------C-CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-------
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER-------P-KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN------- 175 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk-------q-irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN------- 175 (2355)
++++ ..++.+..++|+..... . ...++|||+||++|.+++.. +.+..+++|||||||++..
T Consensus 142 ~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 142 QKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchh
Confidence 9976 34889999999876511 1 12389999999999877764 5677899999999987653
Q ss_pred ----cChHHH-HHHHHHhCC-----------CCceEEEEEecc-ChhHHH-HHHHhccCCeeeccCCCccccccceEEEE
Q psy8497 176 ----TGFVED-ITWIYSQLP-----------PMKQMLVVSATY-SHDNLA-TLQKYMVDPLLIRPEDATRPLLGVKQLVA 237 (2355)
Q Consensus 176 ----~GF~Sr-LeeILs~Lp-----------pnrQILLLSATL-S~EILE-lLkKfLrdPvIIrVesee~~~seVrQvVv 237 (2355)
.+|... +..++..++ ...|+|++|||+ +..+.. .+..++. +.+.........+.+.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEE
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEE
Confidence 666666 788888776 788999999994 433322 2222222 222222333444555544
Q ss_pred eccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccE-EeeCCCCHHHHHHHHHHHhCCCc
Q psy8497 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAE-YLSGAQDQKARLASLDSFKRGKV 316 (2355)
Q Consensus 238 qVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVa-rLHGgMSqEERqeILErFRSGEI 316 (2355)
.+. +...|..++... ..++||||+++..++.|+..|...++.+. .+|| +|.+ ++.|++|++
T Consensus 294 ~~~-----------k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~ 355 (1104)
T 4ddu_A 294 SSR-----------SKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKI 355 (1104)
T ss_dssp SCC-----------CHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSC
T ss_pred ecC-----------HHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCC
Confidence 331 234445555543 37999999999999999999999999998 9998 2555 999999999
Q ss_pred cEEEE----ecccccccCCCC-ccEEEEecCCC-----------------------------------------------
Q psy8497 317 RILVT----TDLAARGIDAAN-VDLVINLEIPH----------------------------------------------- 344 (2355)
Q Consensus 317 dVLVS----TSALGEGLDLPa-VDTVIIyDSP~----------------------------------------------- 344 (2355)
+|||| |+++++|||+|+ |++||+||.|.
T Consensus 356 ~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~ 435 (1104)
T 4ddu_A 356 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQK 435 (1104)
T ss_dssp SEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHH
T ss_pred CEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 99999 999999999999 99999999998
Q ss_pred -------------------------CHhHHHHHhhccCCCCCcc--EEEEEEcccCHHHHHHHHHhhc
Q psy8497 345 -------------------------DAATYLHRMGRAGRYGTRG--LVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 345 -------------------------SPqSYIQRIGRAGRiGQkG--kVIVLVSsdDVEeIEsLrReLK 385 (2355)
++..|+||+||+||.|..| +.+.++..++...+..+.+.+.
T Consensus 436 ~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 436 EFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7789999999999965432 3444444577777777766554
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=378.44 Aligned_cols=323 Identities=15% Similarity=0.227 Sum_probs=246.9
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+.+.+.. +||. | ++|.++++.++.++++|+++|||+|||+ +.++++..+.. .++++|||+|+++|+.|+.+.+
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHH
Confidence 4555554 8998 9 9999999999999999999999999997 77777776653 4678999999999999999999
Q ss_pred HHHhcccCCc----EEEEEECCccccC------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHH
Q psy8497 111 RSVGAHVKNL----HVDYFIGGTQVER------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVE 180 (2355)
Q Consensus 111 REFgk~APgL----rVVvytGGkq~rk------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~S 180 (2355)
++++... ++ .+..++|+..... ....++|+|+||++|.+++.. +..+++|||||||++.++ ..
T Consensus 120 ~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~--~~ 192 (1054)
T 1gku_B 120 RKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA--SK 192 (1054)
T ss_dssp HHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS--TH
T ss_pred HHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc--cc
Confidence 9998766 56 8889999865432 112289999999999877654 568999999999999984 47
Q ss_pred HHHHHHHhC-----------CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchh
Q psy8497 181 DITWIYSQL-----------PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY 249 (2355)
Q Consensus 181 rLeeILs~L-----------ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ 249 (2355)
.+..++..+ +...|++++|||++.. ......++..+..+.+.........+.+.+. ...
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~--~~~------- 262 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV--NDE------- 262 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE--SCC-------
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe--chh-------
Confidence 777777766 3457899999999876 3222233322222333333233333444433 111
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEE----eccc
Q psy8497 250 VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVT----TDLA 325 (2355)
Q Consensus 250 lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVS----TSAL 325 (2355)
+...|..++... ..++||||++++.++.|+..|... +.+..+||+| ..+++.|++|.++|||| |+++
T Consensus 263 --k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 263 --SISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp --CTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC-----
T ss_pred --HHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCee
Confidence 122345555544 468999999999999999999988 9999999998 37889999999999999 8999
Q ss_pred ccccCCCCc-cEEEEecCC-------------------------------------------------------------
Q psy8497 326 ARGIDAANV-DLVINLEIP------------------------------------------------------------- 343 (2355)
Q Consensus 326 GEGLDLPaV-DTVIIyDSP------------------------------------------------------------- 343 (2355)
++|||+|+| ++||+++.|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999996 999999999
Q ss_pred ----------CCHhHHHHHhhccCCCCCcc--EEEEEEcccCHHHHHHHHHhhcc
Q psy8497 344 ----------HDAATYLHRMGRAGRYGTRG--LVITIVSAESLVKFHSLMGEINL 386 (2355)
Q Consensus 344 ----------~SPqSYIQRIGRAGRiGQkG--kVIVLVSsdDVEeIEsLrReLKL 386 (2355)
.+...|+||+|||||.|..| .+++|+...+...+..+.+.+..
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999987765 47888878788887777666553
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=346.24 Aligned_cols=326 Identities=17% Similarity=0.223 Sum_probs=223.5
Q ss_pred CCcHHHHHHHHHHH---------cCCcEEEEccCCchHHHHHHHHHHHHHHhcCC---CCCeEEEEcccHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVL---------NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV---QQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 43 eLRPYQeEALn~LL---------SGRNVILAAPTGSGKTLVALIAILerL~ekr~---qggRVLILVPTRALAqQ~anwL 110 (2355)
.|+|||.+++.|++ .+.++||+++||+|||++++..+...+..... ...++|||||+ +|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 79999999999985 24569999999999998887666655543221 23569999997 7778888888
Q ss_pred HHHhcccCCcEEEEEECCccccC------------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER------------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk------------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
.++... .+.++.+.++..... ....++|+|+||+.+.... ..+....|++|||||||++++..
T Consensus 134 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh-
Confidence 887643 355666666542210 0123789999999986433 44556789999999999999765
Q ss_pred HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHH-------------------h--------------------------
Q psy8497 179 VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQK-------------------Y-------------------------- 213 (2355)
Q Consensus 179 ~SrLeeILs~LppnrQILLLSATLS~EILElLkK-------------------f-------------------------- 213 (2355)
......+..+. ....|+|||||.++....+.. +
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 44455555554 457899999997543110000 0
Q ss_pred ---ccCCeeeccCCCcc--ccccceEEEEeccCCC--------------------C------------------------
Q psy8497 214 ---MVDPLLIRPEDATR--PLLGVKQLVALIPECK--------------------N------------------------ 244 (2355)
Q Consensus 214 ---LrdPvIIrVesee~--~~seVrQvVvqVpe~k--------------------n------------------------ 244 (2355)
+..+++++...... ..+.....+..++... .
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 00111111111100 0111111111111000 0
Q ss_pred --------------------------CcchhhhHHHHHHHHH---hcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEe
Q psy8497 245 --------------------------PSLRYVDEEKKLVQLL---SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYL 295 (2355)
Q Consensus 245 --------------------------~sLt~lsKkeaLLqLL---erl~kgRVLVFSQTRKmAEiLADyLrErGIKVarL 295 (2355)
.......+...|..++ ......++||||+++.+++.|+.+|...++.+.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 0000111222233333 22345799999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhCCCc---cEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCcc--EEEEEEc
Q psy8497 296 SGAQDQKARLASLDSFKRGKV---RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG--LVITIVS 370 (2355)
Q Consensus 296 HGgMSqEERqeILErFRSGEI---dVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkG--kVIVLVS 370 (2355)
||+|+..+|..+++.|+++.. .|||+|.++++||||+.+++||++|+||||..+.|++||++|+|+.. .|+.|+.
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 999999999999999999865 48999999999999999999999999999999999999999999765 4555566
Q ss_pred ccCHHH
Q psy8497 371 AESLVK 376 (2355)
Q Consensus 371 sdDVEe 376 (2355)
..+.++
T Consensus 527 ~~tiEe 532 (644)
T 1z3i_X 527 TGTIEE 532 (644)
T ss_dssp TTSHHH
T ss_pred CCCHHH
Confidence 665554
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=364.44 Aligned_cols=313 Identities=19% Similarity=0.188 Sum_probs=243.4
Q ss_pred HHHHH-HHCCCCCCcHHHHHHHHHHHc----CC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHH
Q psy8497 32 IRQGL-QENGFVKESPIQMAAFPYVLN----GY--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAV 104 (2355)
Q Consensus 32 LLK~L-qa~GF~eLRPYQeEALn~LLS----GR--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAq 104 (2355)
+.+.+ ..++| +|+|+|.++++.++. ++ ++||++|||+|||++++++++..+. .+.++||||||++|+.
T Consensus 592 ~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~----~g~~vlvlvPt~~La~ 666 (1151)
T 2eyq_A 592 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----NHKQVAVLVPTTLLAQ 666 (1151)
T ss_dssp HHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----TTCEEEEECSSHHHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH----hCCeEEEEechHHHHH
Confidence 44444 55787 579999999999986 55 8999999999999999988877655 3679999999999999
Q ss_pred HHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc
Q psy8497 105 QITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 105 Q~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~ 176 (2355)
|+.+.+.+++... ++.+..+.+...... ....++|+|+||+.|. ..+.+..+++|||||+|++.
T Consensus 667 Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g-- 738 (1151)
T 2eyq_A 667 QHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFG-- 738 (1151)
T ss_dssp HHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSC--
T ss_pred HHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhcC--
Confidence 9999999887655 677888877543221 1124899999998662 34567899999999999953
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHH
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaL 256 (2355)
.....++..+....++|+|||||.+.........+.+...+..... ....+...+.... .......+
T Consensus 739 ---~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~~--------~~~i~~~i 805 (1151)
T 2eyq_A 739 ---VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYD--------SMVVREAI 805 (1151)
T ss_dssp ---HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEECC--------HHHHHHHH
T ss_pred ---hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecCC--------HHHHHHHH
Confidence 4455666667778899999999988777666555544333322211 1122222222111 11222333
Q ss_pred HHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc
Q psy8497 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334 (2355)
Q Consensus 257 LqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV 334 (2355)
+..+. ..+++||||+++..++.+++.|... ++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++
T Consensus 806 l~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v 883 (1151)
T 2eyq_A 806 LREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 883 (1151)
T ss_dssp HHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTE
T ss_pred HHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCC
Confidence 33333 3479999999999999999999987 7899999999999999999999999999999999999999999999
Q ss_pred cEEEEecC-CCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 335 DLVINLEI-PHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 335 DTVIIyDS-P~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
++||+++. ++++.+|+|++||+||.|+.+.+++++...
T Consensus 884 ~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 884 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999998 579999999999999999999999998654
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=364.01 Aligned_cols=348 Identities=15% Similarity=0.131 Sum_probs=237.5
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
+|+|||.+++.+++.. .++||+++||+|||++++.++...+.. ....++|||||+ .|+.||...+.+.+ ++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~--g~~~rvLIVvP~-sLl~Qw~~E~~~~f----~l 225 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS--GAAERVLIIVPE-TLQHQWLVEMLRRF----NL 225 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT--SSCCCEEEECCT-TTHHHHHHHHHHHS----CC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh--CCCCeEEEEeCH-HHHHHHHHHHHHHh----CC
Confidence 7999999999999874 479999999999999988777666553 345589999999 99999998887665 45
Q ss_pred EEEEEECCccc------cCCCCCCcEEEECHHHHHHHHH-hhcccCcCceEEEecccchhcccChH-HHHHHHHHh-CCC
Q psy8497 121 HVDYFIGGTQV------ERPKRPVQIVVGSPGRIKQMIK-LKYLNMDSVRLFIMDEADKLINTGFV-EDITWIYSQ-LPP 191 (2355)
Q Consensus 121 rVVvytGGkq~------rkqirq~DILVTTPErLLDLLd-rr~LdLSkIdLLIVDEAHRLkN~GF~-SrLeeILs~-Lpp 191 (2355)
.+.++.++... .......+|+|+||+.|..... ...+....|++|||||||++.+.... .....++.. ...
T Consensus 226 ~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 66666655421 1223347899999998853211 12234567999999999999865421 111222222 224
Q ss_pred CceEEEEEeccChhH----HHHHHH----------------------------hccC-C---------------------
Q psy8497 192 MKQMLVVSATYSHDN----LATLQK----------------------------YMVD-P--------------------- 217 (2355)
Q Consensus 192 nrQILLLSATLS~EI----LElLkK----------------------------fLrd-P--------------------- 217 (2355)
..++|+|||||..+. ...+.. ++.. +
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHH
Confidence 567999999986411 111100 0000 0
Q ss_pred ------------------------------eeeccCCCc---cccccceEEEEecc------------------------
Q psy8497 218 ------------------------------LLIRPEDAT---RPLLGVKQLVALIP------------------------ 240 (2355)
Q Consensus 218 ------------------------------vIIrVesee---~~~seVrQvVvqVp------------------------ 240 (2355)
..++..... .+..........++
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRAR 465 (968)
T ss_dssp GGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTH
T ss_pred HhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHh
Confidence 000000000 00000000000000
Q ss_pred -------------CCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHh-cCCccEEeeCCCCHHHHHH
Q psy8497 241 -------------ECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN-ANFGAEYLSGAQDQKARLA 306 (2355)
Q Consensus 241 -------------e~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrE-rGIKVarLHGgMSqEERqe 306 (2355)
...........+...|..++......++||||+++..++.|+..|.. .|+.+..+||+|+..+|..
T Consensus 466 ~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~ 545 (968)
T 3dmq_A 466 DMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDR 545 (968)
T ss_dssp HHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHH
T ss_pred hhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 00001122234567788888877778999999999999999999995 5999999999999999999
Q ss_pred HHHHHhCCC--ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 307 SLDSFKRGK--VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 307 ILErFRSGE--IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
+++.|++|+ ++|||||+++++|||+|.+++||++|+||++..|+|++||++|.|+.+.|++++........+.+.+..
T Consensus 546 ~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 546 AAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 999999998 999999999999999999999999999999999999999999999888666665444444444555555
Q ss_pred ccccccccCCCcc
Q psy8497 385 NLDHAFNVGLVPD 397 (2355)
Q Consensus 385 KLKLaLe~eIVPk 397 (2355)
..+.......++.
T Consensus 626 ~~k~~~~~~~~~~ 638 (968)
T 3dmq_A 626 HEGLDAFEHTCPT 638 (968)
T ss_dssp HHTTCCSSSCCSS
T ss_pred HhCCCceecCCCC
Confidence 4444444444443
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=360.38 Aligned_cols=317 Identities=21% Similarity=0.237 Sum_probs=232.7
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+.+.+..++| .|+++|.++++.++.+ .++||++|||+|||++++++++..+.. +.++|||+|+++|+.|
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----GFQTAFMVPTSILAIQ 432 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----TSCEEEECSCHHHHHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHH
Confidence 5666778999 9999999999999875 589999999999999999999988763 6789999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+.+.+.+++... ++++..++|+...... ...++|+|+||+.|.+ .+.+..+++|||||+|++....
T Consensus 433 ~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 433 HYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 999999998665 7899999998654321 1248999999987633 4567889999999999964221
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHH
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLL 257 (2355)
...+.......++|+||||+.+...............+. ........+.. ..+... ........+.
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~--~~p~~r~~i~~--~~~~~~-----~~~~l~~~i~ 572 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVID--EMPPGRKEVQT--MLVPMD-----RVNEVYEFVR 572 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEEC--CCCSSCCCCEE--CCCCSS-----THHHHHHHHH
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeee--ccCCCCcceEE--EEeccc-----hHHHHHHHHH
Confidence 111222334689999999998765543321111111111 11010111111 111111 0111112222
Q ss_pred HHHhcCCCCeEEEEEccc--------ccHHHHHHHHHh---cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q psy8497 258 QLLSQTPFNQCVIFSNYQ--------LRPEVICENLAN---ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA 326 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTR--------KmAEiLADyLrE---rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG 326 (2355)
..+ ....+++|||+.+ ..++.+++.|.. .++.+..+||+|+..+|..+++.|++|+++|||||++++
T Consensus 573 ~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 573 QEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 222 2346899999966 457888888887 478999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEcccCHH
Q psy8497 327 RGIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSAESLV 375 (2355)
Q Consensus 327 EGLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVE 375 (2355)
+|||+|++++||++++|. +...+.|++||+||.|+.+.|++++...+..
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 999999999999999995 7899999999999999999999998743333
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=341.63 Aligned_cols=327 Identities=14% Similarity=0.175 Sum_probs=245.4
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|| .|+|+|..+++.+++|+ |..++||+|||++|++|++.... .+..++||+||++||.|..+|+..++.++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL----~g~~vlVltptreLA~qd~e~~~~l~~~l 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL----TGKGVHVVTVNEYLASRDAEQMGKIFEFL 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT----TSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 4899 99999999999999998 99999999999999999984332 25679999999999999999999998888
Q ss_pred CCcEEEEEECCccccCC--CCCCcEEEECHHHH-HHHHHhh------cccCcCceEEEecccchhc-ccC----------
Q psy8497 118 KNLHVDYFIGGTQVERP--KRPVQIVVGSPGRI-KQMIKLK------YLNMDSVRLFIMDEADKLI-NTG---------- 177 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkq--irq~DILVTTPErL-LDLLdrr------~LdLSkIdLLIVDEAHRLk-N~G---------- 177 (2355)
++++.+++|+...... ...++|+|+||..| .+++... .+.+..+.++||||||+|+ +..
T Consensus 152 -gl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 152 -GLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp -TCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred -CCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 8999999998643211 12389999999999 6666543 3557889999999999987 553
Q ss_pred -----hHHHHHHHHHhCCC---------CceEE-----------------EEEeccCh---hHHHHHH--Hhcc-C-Cee
Q psy8497 178 -----FVEDITWIYSQLPP---------MKQML-----------------VVSATYSH---DNLATLQ--KYMV-D-PLL 219 (2355)
Q Consensus 178 -----F~SrLeeILs~Lpp---------nrQIL-----------------LLSATLS~---EILElLk--KfLr-d-PvI 219 (2355)
|+..+..++..++. ..|++ ++|||.+. .+...+. .++. + .++
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 77889999999873 67777 88999763 2222222 1121 1 111
Q ss_pred e-----------------------------------ccCCCccccccce------------------------------E
Q psy8497 220 I-----------------------------------RPEDATRPLLGVK------------------------------Q 234 (2355)
Q Consensus 220 I-----------------------------------rVesee~~~seVr------------------------------Q 234 (2355)
+ .+.........+. .
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 1 0000000000000 0
Q ss_pred EEEeccCCCCC---------cchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 235 LVALIPECKNP---------SLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 235 vVvqVpe~kn~---------sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
-+..+|..... +.....+...|...+.. ....+|||||.+++.++.|...|...|+.+..|||.+.+.+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 01223321110 11223445566665543 23458999999999999999999999999999999998888
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCC--------CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAA--------NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLP--------aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|..+.+.|+.| .|||||+++++|+||+ .+.+||+++.|.++..|+||+||+||.|.+|.++.|++..+.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 87777666655 6999999999999999 788999999999999999999999999999999999976653
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=334.29 Aligned_cols=307 Identities=16% Similarity=0.196 Sum_probs=191.1
Q ss_pred CCcHHHHHHHHHHHc----C-CcEEEEccCCchHHHHHHHHHHHHHHhc-----CCCCCeEEEEcccHHHHHHHH-HHHH
Q psy8497 43 KESPIQMAAFPYVLN----G-YDAIVQSKSGTGKSIVFVVAALNKLIKL-----PVQQPQTIILAPTREIAVQIT-DVVR 111 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----G-RNVILAAPTGSGKTLVALIAILerL~ek-----r~qggRVLILVPTRALAqQ~a-nwLR 111 (2355)
.|++||.+++++++. + +++||++|||+|||++++.++...+... ....+++|||||+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999999886 4 5699999999999999765555444321 115688999999999999998 7776
Q ss_pred HHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHH----hhcccCcCceEEEecccchhcccChHHHHHHHHH
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIK----LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLd----rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs 187 (2355)
.+.. .+..+.++. .....+|+|+||++|..... ...+....+++|||||||++.... ...+..++.
T Consensus 258 ~~~~-----~~~~~~~~~----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~ 327 (590)
T 3h1t_A 258 PFGD-----ARHKIEGGK----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILE 327 (590)
T ss_dssp TTCS-----SEEECCC------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHH
T ss_pred hcch-----hhhhhhccC----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHH
Confidence 6532 233333221 23347899999999877654 234456779999999999987642 245566777
Q ss_pred hCCCCceEEEEEeccChhHHHHHHHhccCCeeec-cCC--CccccccceEEEEeccCC----------------------
Q psy8497 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PED--ATRPLLGVKQLVALIPEC---------------------- 242 (2355)
Q Consensus 188 ~LppnrQILLLSATLS~EILElLkKfLrdPvIIr-Ves--ee~~~seVrQvVvqVpe~---------------------- 242 (2355)
.++ ..++|+|||||.......+..++..+.... ... ..................
T Consensus 328 ~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (590)
T 3h1t_A 328 YFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGE 406 (590)
T ss_dssp HST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------------
T ss_pred hCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccccc
Confidence 775 478999999998654444444333222110 000 000000011110100000
Q ss_pred -CCCcchh----hhH----HHHHHHHHhc-CCCCeEEEEEcccccHHHHHHHHHhcCCc--------cEEeeCCCCHHHH
Q psy8497 243 -KNPSLRY----VDE----EKKLVQLLSQ-TPFNQCVIFSNYQLRPEVICENLANANFG--------AEYLSGAQDQKAR 304 (2355)
Q Consensus 243 -kn~sLt~----lsK----keaLLqLLer-l~kgRVLVFSQTRKmAEiLADyLrErGIK--------VarLHGgMSqEER 304 (2355)
....+.. ... ...|...+.. ....++||||+++..++.|++.|...+.. +..+||.++. +|
T Consensus 407 ~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r 485 (590)
T 3h1t_A 407 YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IG 485 (590)
T ss_dssp --CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HH
T ss_pred CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HH
Confidence 0000000 001 1223333333 34479999999999999999999876543 6788998764 79
Q ss_pred HHHHHHHhCCCcc---EEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCC
Q psy8497 305 LASLDSFKRGKVR---ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361 (2355)
Q Consensus 305 qeILErFRSGEId---VLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQ 361 (2355)
..+++.|++++.. |||+|+++++|||+|.+++||+++.|+++..|+||+||++|.+.
T Consensus 486 ~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 486 KGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999998765 88899999999999999999999999999999999999999874
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=334.61 Aligned_cols=326 Identities=14% Similarity=0.163 Sum_probs=222.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|+++|..+++.+++|+ |..++||+|||++|++|++.... .+.+++||+||++||.|..+|+..++.++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l----~g~~vlVltPTreLA~Q~~e~~~~l~~~l- 142 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL----TGKGVHVVTVNDYLAQRDAENNRPLFEFL- 142 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT----TSSCCEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH----cCCcEEEEcCCHHHHHHHHHHHHHHHHhc-
Confidence 676 99999999999999998 99999999999999999985443 25679999999999999999999999888
Q ss_pred CcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhhc------ccCcCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLKY------LNMDSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr~------LdLSkIdLLIVDEAHRLk-N~------------ 176 (2355)
++++.+++|+..... ....++|+|+||..| ++++.... +.+..+.++||||||+|+ +.
T Consensus 143 gl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 143 GLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 899999999865321 112389999999999 78877543 567889999999999988 43
Q ss_pred ---ChHHHHHHHHHhCCC--------------------CceEE------------------------EEEeccCh---hH
Q psy8497 177 ---GFVEDITWIYSQLPP--------------------MKQML------------------------VVSATYSH---DN 206 (2355)
Q Consensus 177 ---GF~SrLeeILs~Lpp--------------------nrQIL------------------------LLSATLS~---EI 206 (2355)
+|+..+..++..++. ..|++ ++|||.+. .+
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 256777788877764 34553 77888643 11
Q ss_pred HHHHH--Hhcc--------CCe-----------------------------eeccCCCccccccce--------------
Q psy8497 207 LATLQ--KYMV--------DPL-----------------------------LIRPEDATRPLLGVK-------------- 233 (2355)
Q Consensus 207 LElLk--KfLr--------dPv-----------------------------IIrVesee~~~seVr-------------- 233 (2355)
...+. .++. +.. .+.+.........+.
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 11110 0110 000 001110000000000
Q ss_pred ----------------EEEEeccCCCC---------CcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHH
Q psy8497 234 ----------------QLVALIPECKN---------PSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLA 286 (2355)
Q Consensus 234 ----------------QvVvqVpe~kn---------~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLr 286 (2355)
.-+..+|.... .+.....+...|...+.. ....+|||||.++..++.|...|.
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 00111221100 011223455666666643 345689999999999999999999
Q ss_pred hcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc--------------------------------
Q psy8497 287 NANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV-------------------------------- 334 (2355)
Q Consensus 287 ErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV-------------------------------- 334 (2355)
..|+.+..|||.+...++..+.+.|+.| .|+|||+++++|+||+..
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999999988998888999888 699999999999999973
Q ss_pred -----cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 335 -----DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 335 -----DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.+||+++.|.+...|.|++||+||.|.+|.++.|++..+.
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987664
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=330.14 Aligned_cols=335 Identities=15% Similarity=0.158 Sum_probs=241.7
Q ss_pred cccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHh-cCCCCCeEEEE
Q psy8497 20 VLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIK-LPVQQPQTIIL 96 (2355)
Q Consensus 20 kV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~e-kr~qggRVLIL 96 (2355)
+..+|..+.+.+ +.+.+...+ ..|.+.|.++|..++. ++++||++|||+|||++ ++++..... ....+..+||+
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEec
Confidence 456799999888 888888888 6888899998887775 56799999999999973 333321111 11125679999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcc
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LIN 175 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN 175 (2355)
+|+++|+.|+.+.+.+......+..+........ ......+|+|+|+++|...+... ..+..+++|||||+|. .++
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld 223 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLA 223 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHH
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccc
Confidence 9999999999887766543322333332221111 12235789999999998777654 3478999999999995 554
Q ss_pred cCh-HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHH
Q psy8497 176 TGF-VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254 (2355)
Q Consensus 176 ~GF-~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKke 254 (2355)
..+ ...+..+... .+..|+|+||||+... .+..++....++.+.... ..+...+...+.. ........
T Consensus 224 ~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~----~~~~~~l~ 292 (773)
T 2xau_A 224 TDILMGLLKQVVKR-RPDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT---YPVELYYTPEFQR----DYLDSAIR 292 (773)
T ss_dssp HHHHHHHHHHHHHH-CTTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC---CCEEEECCSSCCS----CHHHHHHH
T ss_pred hHHHHHHHHHHHHh-CCCceEEEEeccccHH---HHHHHhcCCCcccccCcc---cceEEEEecCCch----hHHHHHHH
Confidence 332 2334444433 3578999999999643 344455544444443322 1233222211111 11122334
Q ss_pred HHHHHHhcCCCCeEEEEEcccccHHHHHHHHHh-----------cCCccEEeeCCCCHHHHHHHHHHHh-----CCCccE
Q psy8497 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN-----------ANFGAEYLSGAQDQKARLASLDSFK-----RGKVRI 318 (2355)
Q Consensus 255 aLLqLLerl~kgRVLVFSQTRKmAEiLADyLrE-----------rGIKVarLHGgMSqEERqeILErFR-----SGEIdV 318 (2355)
.++.++.....+++|||+++++.++.++..|.. .++.+..+||+|+..+|..+++.|. .|..+|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE
Confidence 555565555668999999999999999999985 5788999999999999999999999 999999
Q ss_pred EEEecccccccCCCCccEEEEecC------------------CCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 319 LVTTDLAARGIDAANVDLVINLEI------------------PHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 319 LVSTSALGEGLDLPaVDTVIIyDS------------------P~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
||||+++++|||+|++++||.++. |.+..+|+||+|||||. .+|.+++|+...
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999777 88999999999999998 889999888644
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=317.06 Aligned_cols=286 Identities=18% Similarity=0.144 Sum_probs=208.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCcE-EEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 40 GFVKESPIQMAAFPYVLNGYDA-IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGRNV-ILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
|+.+++|+|. +++.++.++++ |+++|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~------- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR------- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT-------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc-------
Confidence 6778999985 79999988886 889999999999999999877663 45789999999999999988774
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHH-hCCCCceEEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS-QLPPMKQMLV 197 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs-~LppnrQILL 197 (2355)
++.+........ ........|.++|++.|...+... ..+..+++|||||||++ +..+...+..+.. ...+..|+|+
T Consensus 70 g~~v~~~~~~~~-~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~ 146 (451)
T 2jlq_A 70 GLPIRYQTPAVK-SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIF 146 (451)
T ss_dssp TSCEEECCTTCS-CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred Cceeeeeecccc-ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEE
Confidence 223322111111 112223568999999987776543 45788999999999987 3332222222222 2355789999
Q ss_pred EEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEccccc
Q psy8497 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLR 277 (2355)
Q Consensus 198 LSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKm 277 (2355)
||||++...... +...+..+.. ...++.. .. .. +...+... .+++||||++++.
T Consensus 147 ~SAT~~~~~~~~---~~~~~~~~~~-------------~~~~p~~--~~---~~----~~~~l~~~-~~~~lVF~~s~~~ 200 (451)
T 2jlq_A 147 MTATPPGSTDPF---PQSNSPIEDI-------------EREIPER--SW---NT----GFDWITDY-QGKTVWFVPSIKA 200 (451)
T ss_dssp ECSSCTTCCCSS---CCCSSCEEEE-------------ECCCCSS--CC---SS----SCHHHHHC-CSCEEEECSSHHH
T ss_pred EccCCCccchhh---hcCCCceEec-------------CccCCch--hh---HH----HHHHHHhC-CCCEEEEcCCHHH
Confidence 999997532211 1111111111 1111111 00 00 11222222 4599999999999
Q ss_pred HHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEec----------------
Q psy8497 278 PEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLE---------------- 341 (2355)
Q Consensus 278 AEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyD---------------- 341 (2355)
++.++..|...++.+..+|+.+. ..+++.|++|+++|||||+++++|||+|. ++||+++
T Consensus 201 a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~ 275 (451)
T 2jlq_A 201 GNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVI 275 (451)
T ss_dssp HHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceee
Confidence 99999999999999999999764 57899999999999999999999999999 9999988
Q ss_pred ----CCCCHhHHHHHhhccCCCCC-ccEEEEEEc
Q psy8497 342 ----IPHDAATYLHRMGRAGRYGT-RGLVITIVS 370 (2355)
Q Consensus 342 ----SP~SPqSYIQRIGRAGRiGQ-kGkVIVLVS 370 (2355)
.|.+..+|+||+|||||.|. .+.+++|..
T Consensus 276 ~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 276 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 99999999999999999997 788888864
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-32 Score=331.83 Aligned_cols=299 Identities=17% Similarity=0.134 Sum_probs=221.8
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
...+.|+|..+++.+++++++|+++|||+|||++|+++++..+.. .+.++|||+|+++|+.|+.+.+.. +
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa~Qi~~~l~~-------~ 238 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVAAEMEEALRG-------L 238 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTT-------S
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHHHHHHHHhcC-------C
Confidence 367788888789999999999999999999999999999988764 467899999999999999987762 2
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC-CCceEEEEE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQMLVVS 199 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-pnrQILLLS 199 (2355)
.+. +.+............|.++|.+.|...+... ..+..+++|||||||++ +.++...+..++..++ ...|+|+||
T Consensus 239 ~v~-~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~S 315 (618)
T 2whx_A 239 PIR-YQTPAVKSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMT 315 (618)
T ss_dssp CEE-ECCTTSSCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred cee-EecccceeccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEE
Confidence 232 2222211111122457788888877655443 34788999999999998 5566677777777664 678999999
Q ss_pred eccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHH
Q psy8497 200 ATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPE 279 (2355)
Q Consensus 200 ATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAE 279 (2355)
||++.....++. ..+..+.+. ..++... . ..++..+... ..++||||++++.++
T Consensus 316 AT~~~~~~~~~~---~~~~~~~v~-------------~~~~~~~---~------~~ll~~l~~~-~~~~LVF~~s~~~a~ 369 (618)
T 2whx_A 316 ATPPGSTDPFPQ---SNSPIEDIE-------------REIPERS---W------NTGFDWITDY-QGKTVWFVPSIKAGN 369 (618)
T ss_dssp SSCTTCCCSSCC---CSSCEEEEE-------------CCCCSSC---C------SSSCHHHHHC-CSCEEEECSSHHHHH
T ss_pred CCCchhhhhhhc---cCCceeeec-------------ccCCHHH---H------HHHHHHHHhC-CCCEEEEECChhHHH
Confidence 999754321110 011111111 0111110 0 0112222222 469999999999999
Q ss_pred HHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEE--------------------EE
Q psy8497 280 VICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLV--------------------IN 339 (2355)
Q Consensus 280 iLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTV--------------------II 339 (2355)
.+++.|...++.+..+||. +|.++++.|++|+++|||||+++++|||+| +++| |+
T Consensus 370 ~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~ 444 (618)
T 2whx_A 370 DIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILA 444 (618)
T ss_dssp HHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEc
Confidence 9999999999999999984 788899999999999999999999999998 8888 77
Q ss_pred ecCCCCHhHHHHHhhccCCCC-CccEEEEEEc---ccCHHHHHHHHHh
Q psy8497 340 LEIPHDAATYLHRMGRAGRYG-TRGLVITIVS---AESLVKFHSLMGE 383 (2355)
Q Consensus 340 yDSP~SPqSYIQRIGRAGRiG-QkGkVIVLVS---sdDVEeIEsLrRe 383 (2355)
++.|.+..+|+||+||+||.| .++.+++|+. ..+...+..+...
T Consensus 445 ~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 445 GPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH
T ss_pred ccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH
Confidence 888999999999999999996 4899999997 5555555555444
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=327.94 Aligned_cols=329 Identities=15% Similarity=0.140 Sum_probs=248.1
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|+ .|+++|..+++.+++|+ |..++||+|||++|++|++.... .+..++||+||+.||.|..+|+..++.++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL----~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL----AGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT----TTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH----hCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 3788 99999999999999988 99999999999999999964333 25679999999999999999999999888
Q ss_pred CCcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhh------cccCcCceEEEecccchhc-cc-----------
Q psy8497 118 KNLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLK------YLNMDSVRLFIMDEADKLI-NT----------- 176 (2355)
Q Consensus 118 PgLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr------~LdLSkIdLLIVDEAHRLk-N~----------- 176 (2355)
++++.+++|+..... ....++|+|+||..| ++++... .+.+..+.++||||||+|+ +.
T Consensus 180 -GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 180 -GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp -TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred -CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 899999999864321 112389999999998 7777654 3567889999999999987 32
Q ss_pred ----ChHHHHHHHHHhCC---------CCceEE-----------------EEEeccCh---hHHHHHHH--hcc-C----
Q psy8497 177 ----GFVEDITWIYSQLP---------PMKQML-----------------VVSATYSH---DNLATLQK--YMV-D---- 216 (2355)
Q Consensus 177 ----GF~SrLeeILs~Lp---------pnrQIL-----------------LLSATLS~---EILElLkK--fLr-d---- 216 (2355)
+|+..+..++..++ ...|++ ++|||.+. .+...+.. ++. +
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 47889999999997 678888 88999763 22222221 221 1
Q ss_pred ---CeeeccCCC-c---------------------cccccceEE------------------------------------
Q psy8497 217 ---PLLIRPEDA-T---------------------RPLLGVKQL------------------------------------ 235 (2355)
Q Consensus 217 ---PvIIrVese-e---------------------~~~seVrQv------------------------------------ 235 (2355)
..++.+... . .......+.
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 111111100 0 000000001
Q ss_pred -EEeccCCCC---------CcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 236 -VALIPECKN---------PSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 236 -VvqVpe~kn---------~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
+..+|.... .+.....+...|...+.. ....+|||||.++..++.|...|...|+.+..|||.+...+
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rE 498 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQE 498 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHH
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHH
Confidence 111221100 011122344556555533 23458999999999999999999999999999999998888
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCc-------------------------------------------------
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAANV------------------------------------------------- 334 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPaV------------------------------------------------- 334 (2355)
+..+.+.|+.| .|+|||+++++|+||+..
T Consensus 499 a~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 576 (922)
T 1nkt_A 499 ATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIE 576 (922)
T ss_dssp HHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 88888888877 699999999999999975
Q ss_pred ---cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 335 ---DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 335 ---DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
.+||+++.|.+...|.|++||+||.|.+|.++.|++..+..+
T Consensus 577 ~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 577 AGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp TTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred cCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 599999999999999999999999999999999998776644
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-32 Score=320.47 Aligned_cols=285 Identities=17% Similarity=0.195 Sum_probs=187.7
Q ss_pred HHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC
Q psy8497 54 YVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133 (2355)
Q Consensus 54 ~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk 133 (2355)
++++++++||++|||+|||++|+++++..+.. .+.++|||+||++|+.|+.+.+..+ .+....+.... .
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---~~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~~~-v 72 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAFSA-H 72 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCCCC-C
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---cCCeEEEEcchHHHHHHHHHHHhcC-------CeEEeccccee-c
Confidence 45678999999999999999999999987763 3578999999999999999888744 22222211100 0
Q ss_pred CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHH
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkK 212 (2355)
.....-+-+.+...+...+ .....+..+++|||||+|++ +..+...+..+...+ +...|+|+||||++.....+..
T Consensus 73 ~Tp~~l~~~l~~~~l~~~~-~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~- 149 (440)
T 1yks_A 73 GSGREVIDAMCHATLTYRM-LEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH- 149 (440)
T ss_dssp CCSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC-
T ss_pred cCCccceeeecccchhHhh-hCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh-
Confidence 0000112233333332222 22334788999999999998 333322222222222 3578999999999754221110
Q ss_pred hccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCcc
Q psy8497 213 YMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGA 292 (2355)
Q Consensus 213 fLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKV 292 (2355)
. ...+......++...... ++..+... ..++||||++++.++.+++.|...++.+
T Consensus 150 ---~------------~~~~~~~~~~~~~~~~~~---------~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~~~~v 204 (440)
T 1yks_A 150 ---S------------NGEIEDVQTDIPSEPWNT---------GHDWILAD-KRPTAWFLPSIRAANVMAASLRKAGKSV 204 (440)
T ss_dssp ---C------------SSCEEEEECCCCSSCCSS---------SCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCE
T ss_pred ---c------------CCCeeEeeeccChHHHHH---------HHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHcCCCE
Confidence 0 001111111122111000 11112222 4699999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE-------------------ecCCCCHhHHHHHh
Q psy8497 293 EYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN-------------------LEIPHDAATYLHRM 353 (2355)
Q Consensus 293 arLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII-------------------yDSP~SPqSYIQRI 353 (2355)
..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+ ++.|.++.+|+||+
T Consensus 205 ~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~ 279 (440)
T 1yks_A 205 VVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRR 279 (440)
T ss_dssp EECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHH
T ss_pred EEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhc
Confidence 99999 4688999999999999999999999999999 999985 88999999999999
Q ss_pred hccCCC-CCccEEEEEE---cccCHHHHHHHHH
Q psy8497 354 GRAGRY-GTRGLVITIV---SAESLVKFHSLMG 382 (2355)
Q Consensus 354 GRAGRi-GQkGkVIVLV---SsdDVEeIEsLrR 382 (2355)
||+||. |.++.+++|+ ...+...+..+..
T Consensus 280 GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~ 312 (440)
T 1yks_A 280 GRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEA 312 (440)
T ss_dssp TTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred cccCCCCCCCceEEEEeccCChhhhhhhhhhhH
Confidence 999997 6899999996 4555544544443
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=330.15 Aligned_cols=302 Identities=19% Similarity=0.224 Sum_probs=209.6
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHH------cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 35 GLQENGFV-----KESPIQM-----AAFPYVL------NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 35 ~Lqa~GF~-----eLRPYQe-----EALn~LL------SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.|...||. .|+++|. ++|+.++ .++++||++|||+|||++|+++++..+.. .+.++|||+|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaP 278 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAP 278 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEES
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEcc
Confidence 45556666 8999999 9998887 88999999999999999999999987663 4578999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
|++|+.|+.+.+..+. +. ...+... .......-+.+.+...+...+... ..+..+++|||||+|++ +..+
T Consensus 279 Tr~La~Q~~~~l~~~~-----i~--~~~~~l~-~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~ 348 (673)
T 2wv9_A 279 TRVVAAEMAEALRGLP-----VR--YLTPAVQ-REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPAS 348 (673)
T ss_dssp SHHHHHHHHHHTTTSC-----CE--ECCC----CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHH
T ss_pred HHHHHHHHHHHHhcCC-----ee--eeccccc-ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccH
Confidence 9999999998887542 11 1111100 000111224455666665444433 45788999999999998 2212
Q ss_pred HHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHH
Q psy8497 179 VEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257 (2355)
Q Consensus 179 ~SrLeeILs~L-ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLL 257 (2355)
...+..+...+ +...|+|+||||++..+..+ .. . ...+..+...++..... .++
T Consensus 349 ~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~----~~---------~---~~~i~~v~~~~~~~~~~---------~~l 403 (673)
T 2wv9_A 349 IAARGYIATRVEAGEAAAIFMTATPPGTSDPF----PD---------T---NSPVHDVSSEIPDRAWS---------SGF 403 (673)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS----CC---------C---SSCEEEEECCCCSSCCS---------SCC
T ss_pred HHHHHHHHHhccccCCcEEEEcCCCChhhhhh----cc---------c---CCceEEEeeecCHHHHH---------HHH
Confidence 22222233333 25789999999997542110 00 0 01111111111111000 011
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEE
Q psy8497 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLV 337 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTV 337 (2355)
..+.. ...++||||++++.++.++..|...++.+..+||. +|..+++.|++|+++|||||+++++|||+| +++|
T Consensus 404 ~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~V 477 (673)
T 2wv9_A 404 EWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRV 477 (673)
T ss_dssp HHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEE
Confidence 22222 35699999999999999999999999999999994 799999999999999999999999999999 9999
Q ss_pred EE--------------------ecCCCCHhHHHHHhhccCCC-CCccEEEEEE---cccCHHHHHHH
Q psy8497 338 IN--------------------LEIPHDAATYLHRMGRAGRY-GTRGLVITIV---SAESLVKFHSL 380 (2355)
Q Consensus 338 II--------------------yDSP~SPqSYIQRIGRAGRi-GQkGkVIVLV---SsdDVEeIEsL 380 (2355)
|+ ++.|.++.+|+||+||+||. |+.|.+++|+ ...+...+..+
T Consensus 478 I~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~i 544 (673)
T 2wv9_A 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWT 544 (673)
T ss_dssp EECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHH
T ss_pred EECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHH
Confidence 97 56889999999999999998 7899999996 34444333333
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=299.37 Aligned_cols=268 Identities=19% Similarity=0.185 Sum_probs=187.9
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
++++||++|||+|||++|+++++..+.. .+.++|||+|+++|+.|+.+.+. ++.+..+.|..... ....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~---~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~-~~~~ 70 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK---KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSE-RTGN 70 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC----------CC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCcccc-CCCC
Confidence 6789999999999999999888866553 45789999999999999887765 34555555542211 1112
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHh-CCCCceEEEEEeccChhHHHHHHHhccC
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ-LPPMKQMLVVSATYSHDNLATLQKYMVD 216 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~-LppnrQILLLSATLS~EILElLkKfLrd 216 (2355)
.-+.++|...+...+.. ...+..+++|||||+|++ ...+......+... .+...|+|+||||++..+..
T Consensus 71 ~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~-------- 140 (431)
T 2v6i_A 71 EIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA-------- 140 (431)
T ss_dssp CSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS--------
T ss_pred ceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh--------
Confidence 34667788877665554 445788999999999997 32222333333332 25679999999999853110
Q ss_pred CeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEee
Q psy8497 217 PLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLS 296 (2355)
Q Consensus 217 PvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLH 296 (2355)
.... ...+......++.... ..++..+... .+++||||++++.++.+++.|...++.+..+|
T Consensus 141 -----~~~~---~~~i~~~~~~~~~~~~---------~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh 202 (431)
T 2v6i_A 141 -----FPPS---NSPIIDEETRIPDKAW---------NSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLN 202 (431)
T ss_dssp -----SCCC---SSCCEEEECCCCSSCC---------SSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred -----hcCC---CCceeeccccCCHHHH---------HHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 0000 0111111111111110 1112233332 46899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccE-----------------EEEecCCCCHhHHHHHhhccCCC
Q psy8497 297 GAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDL-----------------VINLEIPHDAATYLHRMGRAGRY 359 (2355)
Q Consensus 297 GgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDT-----------------VIIyDSP~SPqSYIQRIGRAGRi 359 (2355)
|. +|..+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+..+|+||+||+||.
T Consensus 203 g~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 203 RK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp TT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred Cc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCC
Confidence 97 578899999999999999999999999999 544 67889999999999999999998
Q ss_pred CC-ccEEEEEE
Q psy8497 360 GT-RGLVITIV 369 (2355)
Q Consensus 360 GQ-kGkVIVLV 369 (2355)
|. .+.+++|.
T Consensus 278 g~~~~~~~~~~ 288 (431)
T 2v6i_A 278 PEKLGDIYAYS 288 (431)
T ss_dssp TTCCCCEEEEC
T ss_pred CCCCCeEEEEc
Confidence 84 45555555
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=309.63 Aligned_cols=274 Identities=20% Similarity=0.213 Sum_probs=191.1
Q ss_pred HHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcc
Q psy8497 51 AFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ 130 (2355)
Q Consensus 51 ALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq 130 (2355)
...++..++++||++|||+|||++|+++++..+.. .+.++|||+|+++|+.|+.+.+.. +.+....+...
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~~~~ 83 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALRG-------LPVRYQTSAVQ 83 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTTT-------SCEEECC----
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhcC-------ceEeEEecccc
Confidence 34455667889999999999999999999987763 467899999999999999988762 22222111111
Q ss_pred ccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh-----cccChHHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 131 VERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL-----INTGFVEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 131 ~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL-----kN~GF~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
. ......-|.++|...+...+... ..+..+++|||||||++ ...++... +. .....|+|+||||++..
T Consensus 84 ~-~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~---~~--~~~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 84 R-EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT---KV--ELGEAAAIFMTATPPGT 156 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH---HH--HTTSCEEEEECSSCTTC
T ss_pred c-CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH---Hh--ccCCccEEEEEcCCCcc
Confidence 0 01112347778888776655443 45788999999999983 32222111 11 23578999999999854
Q ss_pred HHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHH
Q psy8497 206 NLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENL 285 (2355)
Q Consensus 206 ILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyL 285 (2355)
+..+... ..+ +......++...... ++.++... .+++||||++++.++.+++.|
T Consensus 157 ~~~~~~~--~~p--------------i~~~~~~~~~~~~~~---------~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 157 TDPFPDS--NAP--------------IHDLQDEIPDRAWSS---------GYEWITEY-AGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp CCSSCCC--SSC--------------EEEEECCCCSSCCSS---------CCHHHHHC-CSCEEEECSCHHHHHHHHHHH
T ss_pred hhhhccC--CCC--------------eEEecccCCcchhHH---------HHHHHHhc-CCCEEEEeCChHHHHHHHHHH
Confidence 2110000 011 111111111111000 11122222 469999999999999999999
Q ss_pred HhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE--------------------ecCCCC
Q psy8497 286 ANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN--------------------LEIPHD 345 (2355)
Q Consensus 286 rErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII--------------------yDSP~S 345 (2355)
...++.+..+|+. +|..+++.|++|.++|||||+++++|||+|+ ++||+ ++.|.+
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 9999999999985 7888999999999999999999999999999 99998 779999
Q ss_pred HhHHHHHhhccCCCCC-ccEEEEEEccc
Q psy8497 346 AATYLHRMGRAGRYGT-RGLVITIVSAE 372 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQ-kGkVIVLVSsd 372 (2355)
+.+|+||+|||||.|. +|.+++|+...
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999996 89999999764
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-30 Score=319.21 Aligned_cols=276 Identities=16% Similarity=0.178 Sum_probs=207.3
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.++++|.+++..+..++++|+.+|||+|||+++.++++. .+.++|||+|+++|+.|+.+.+.+.. +..+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~----g~~v 285 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH----GIDP 285 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH----SCCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh----CCCe
Confidence 556777777777778889999999999999988877764 25589999999999999999887765 3345
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCce--EEEEEe
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ--MLVVSA 200 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQ--ILLLSA 200 (2355)
...+|+... ....+|+|+||++| +....+.+..+++|||||||. .+.++...+..++..++...+ ++++||
T Consensus 286 g~~vG~~~~---~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~llil~SA 358 (666)
T 3o8b_A 286 NIRTGVRTI---TTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGARLVVLATA 358 (666)
T ss_dssp EEECSSCEE---CCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred eEEECcEec---cCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCceEEEECC
Confidence 566666542 34478999999997 455566778899999999975 455677778888888877666 778899
Q ss_pred ccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHH
Q psy8497 201 TYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEV 280 (2355)
Q Consensus 201 TLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEi 280 (2355)
|++.... ...+.+..+.. ............ . . +.....+++||||++++.++.
T Consensus 359 T~~~~i~------~~~p~i~~v~~------~~~~~i~~~~~~----~-~----------l~~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 359 TPPGSVT------VPHPNIEEVAL------SNTGEIPFYGKA----I-P----------IEAIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp SCTTCCC------CCCTTEEEEEC------BSCSSEEETTEE----E-C----------GGGSSSSEEEEECSCHHHHHH
T ss_pred CCCcccc------cCCcceEEEee------cccchhHHHHhh----h-h----------hhhccCCcEEEEeCCHHHHHH
Confidence 9985210 00000000000 000000000000 0 0 122245799999999999999
Q ss_pred HHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEE----------Eec---------
Q psy8497 281 ICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI----------NLE--------- 341 (2355)
Q Consensus 281 LADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI----------IyD--------- 341 (2355)
+++.|...++.+..+||+|++.+ |.++..+|||||+++++|||++ +++|| +||
T Consensus 412 la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~ 483 (666)
T 3o8b_A 412 LAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET 483 (666)
T ss_dssp HHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE
T ss_pred HHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc
Confidence 99999999999999999999765 4556669999999999999997 99998 566
Q ss_pred --CCCCHhHHHHHhhccCCCCCccEEEEEEcccC
Q psy8497 342 --IPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373 (2355)
Q Consensus 342 --SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdD 373 (2355)
.|.+..+|+||+||+|| |.+|. ++|+...+
T Consensus 484 ~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e 515 (666)
T 3o8b_A 484 TTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGE 515 (666)
T ss_dssp EEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCC
T ss_pred ccCcCCHHHHHHHhccCCC-CCCCE-EEEEecch
Confidence 88999999999999999 99999 88886654
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=252.60 Aligned_cols=198 Identities=32% Similarity=0.501 Sum_probs=176.7
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.+|+++.+++ +++.|...||..|+++|.++++.++.++++|+.+|||+|||++++++++..+.. ...+.++|||+|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-KKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-TSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-cCCCeeEEEEeCcH
Confidence 5799999888 999999999999999999999999999999999999999999999999887652 23456899999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc
Q psy8497 101 EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 101 ALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~ 176 (2355)
+|+.|+.+.+.++....+++.+..+.|+.... .....++|+|+||++|...+....+.+..+++|||||||++.+.
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 161 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 161 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhh
Confidence 99999999999998877788899998886543 12345899999999999999887778889999999999999998
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeee
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLI 220 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvII 220 (2355)
+|...+..++..++...|+|++|||++..+...+..++.+|..+
T Consensus 162 ~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 162 DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred CcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999998899999999999999999999999888765
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=303.20 Aligned_cols=283 Identities=16% Similarity=0.184 Sum_probs=208.5
Q ss_pred HHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc
Q psy8497 53 PYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE 132 (2355)
Q Consensus 53 n~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r 132 (2355)
...++++++|+++|||+|||+.++ ..+.. .+..||++|+++|+.|+++.+.+. ++.+.+++|+....
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~al----~~l~~----~~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~i 216 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHAI----QKYFS----AKSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVT 216 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHHH----HHHHH----SSSEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEEC
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHH----HHHHh----cCCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEE
Confidence 344578899999999999997433 33332 234599999999999999999886 56788899887653
Q ss_pred CC--CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC-CCceEEEEEeccChhHHHH
Q psy8497 133 RP--KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQMLVVSATYSHDNLAT 209 (2355)
Q Consensus 133 kq--irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-pnrQILLLSATLS~EILEl 209 (2355)
.. .+..+++++|++.+. ....+++|||||+|++.+.++...+..++..++ ...+++++|||.. ....
T Consensus 217 v~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~--~i~~ 286 (677)
T 3rc3_A 217 VQPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID--LVME 286 (677)
T ss_dssp CSTTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH--HHHH
T ss_pred ecCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH--HHHH
Confidence 21 223789999987652 246779999999999999889999998998887 6789999999953 3333
Q ss_pred HHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC
Q psy8497 210 LQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN 289 (2355)
Q Consensus 210 LkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG 289 (2355)
+.........+...... ... . ..... + ..+.... ...||||.+++.++.++..|...+
T Consensus 287 l~~~~~~~~~v~~~~r~---~~l---~-~~~~~----l----------~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 287 LMYTTGEEVEVRDYKRL---TPI---S-VLDHA----L----------ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp HHHHHTCCEEEEECCCS---SCE---E-ECSSC----C----------CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHhcCCceEEEEeeec---chH---H-HHHHH----H----------HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcC
Confidence 33333333332111000 000 0 00000 0 0111122 345888999999999999999999
Q ss_pred CccEEeeCCCCHHHHHHHHHHHhC--CCccEEEEecccccccCCCCccEEEEecC--------------CCCHhHHHHHh
Q psy8497 290 FGAEYLSGAQDQKARLASLDSFKR--GKVRILVTTDLAARGIDAANVDLVINLEI--------------PHDAATYLHRM 353 (2355)
Q Consensus 290 IKVarLHGgMSqEERqeILErFRS--GEIdVLVSTSALGEGLDLPaVDTVIIyDS--------------P~SPqSYIQRI 353 (2355)
+.+..+||+|++.+|..+++.|+. |.++|||||+++++|||+ .+++||+++. |.+..+|+||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 999999999999999999999999 889999999999999999 8999999999 77999999999
Q ss_pred hccCCCCCc---cEEEEEEcccCHHHHHHHHH
Q psy8497 354 GRAGRYGTR---GLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 354 GRAGRiGQk---GkVIVLVSsdDVEeIEsLrR 382 (2355)
|||||.|.. |.|+++ ...+...+..+..
T Consensus 424 GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~ 454 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTM-NHEDLSLLKEILK 454 (677)
T ss_dssp TTBTCTTSSCSSEEEEES-STTHHHHHHHHHH
T ss_pred cCCCCCCCCCCCEEEEEE-ecchHHHHHHHHh
Confidence 999999865 544444 3344445555544
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=264.17 Aligned_cols=207 Identities=24% Similarity=0.412 Sum_probs=184.4
Q ss_pred CcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC----CCCC
Q psy8497 17 NIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP----VQQP 91 (2355)
Q Consensus 17 siDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr----~qgg 91 (2355)
.+.++..|+++.+.+ +++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.... ..++
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 467789999999888 99999999999999999999999999999999999999999999999998887422 3467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEe
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIM 167 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIV 167 (2355)
++|||+|+++|+.|+.++++++.... ++.+..++|+...... ...++|+|+||++|.+++....+.+..+++|||
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 89999999999999999999987766 7888888888654321 123789999999999999888888899999999
Q ss_pred cccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCC
Q psy8497 168 DEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPED 224 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVes 224 (2355)
||||++.+.+|...+..++..+++..|++++|||++..+...+..++.++..+.+..
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999999999998887654
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=260.61 Aligned_cols=210 Identities=47% Similarity=0.725 Sum_probs=177.5
Q ss_pred cccccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCC
Q psy8497 12 KDVLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90 (2355)
Q Consensus 12 k~~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qg 90 (2355)
...+..+.+...|+++.+.+ +++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.. ...+
T Consensus 14 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-~~~~ 92 (230)
T 2oxc_A 14 RTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL-ENLS 92 (230)
T ss_dssp ----------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-TSCS
T ss_pred ccCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-cCCC
Confidence 33455667788999999888 999999999999999999999999999999999999999999999999887753 2346
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEe
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIM 167 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIV 167 (2355)
.++|||+|+++|+.|+.+.++++....+++.+..+.|+..... ....++|+|+||++|.+++....+.+..+++|||
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 7899999999999999999999987777889999999865321 2235899999999999998887777889999999
Q ss_pred cccchhcccC-hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeecc
Q psy8497 168 DEADKLINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRP 222 (2355)
Q Consensus 168 DEAHRLkN~G-F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrV 222 (2355)
||||++.+.+ |...+..++..++...|+|++|||++..+...+..++.+|..+.+
T Consensus 173 DEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 173 DEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999887 899999999999989999999999999888888888888877654
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-28 Score=254.24 Aligned_cols=205 Identities=37% Similarity=0.612 Sum_probs=175.8
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
...+.+|+.+.+.+ +++.|..+||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.. ...+.++|||
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-~~~~~~~lil 88 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALML 88 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-TCCSCCEEEE
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc-cCCCceEEEE
Confidence 35567899999988 999999999999999999999999999999999999999999999999887753 2346789999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC---CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP---KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq---irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL 173 (2355)
+|+++|+.|+.+.+.++.... ++.+..+.|+...... ...++|+|+||++|...+....+.+..+++|||||||++
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 167 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred ECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH
Confidence 999999999999999987665 7888888887654322 233899999999999998887778889999999999999
Q ss_pred cccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCC
Q psy8497 174 INTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPED 224 (2355)
Q Consensus 174 kN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVes 224 (2355)
.+.++...+..++..++...|+|++|||++..+...+..++.+|..+.+..
T Consensus 168 ~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 168 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999998877654
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=256.46 Aligned_cols=204 Identities=29% Similarity=0.472 Sum_probs=177.4
Q ss_pred cccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 20 VLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 20 kV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
+..+|+++.+++ +++.|...||..|+++|.++++.+++++++|+++|||+|||++|+++++..+.. ...+.++|||+|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P 80 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-ERAEVQAVITAP 80 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEECS
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh-CcCCceEEEEcC
Confidence 346799999888 999999999999999999999999999999999999999999999999987653 234678999999
Q ss_pred cHHHHHHHHHHHHHHhcccC---CcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 99 TREIAVQITDVVRSVGAHVK---NLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~AP---gLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
+++|+.|+.+.++++....+ ++.+..+.|+...... ...++|+|+||++|..++....+.+..+++|||||||
T Consensus 81 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 81 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 160 (219)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH
T ss_pred cHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch
Confidence 99999999999999876653 5778888887654322 2347899999999999988877778899999999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCC
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPED 224 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVes 224 (2355)
++.+.++...+..++..++...|+|++|||++..+...+..++.+|..+....
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999988999999999999999999999999998776543
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=258.90 Aligned_cols=215 Identities=25% Similarity=0.418 Sum_probs=182.7
Q ss_pred hhhccccccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc
Q psy8497 8 CARTKDVLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL 86 (2355)
Q Consensus 8 r~rTk~~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek 86 (2355)
+.+.+.......+...|+++.+.+ +++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~ 90 (236)
T 2pl3_A 11 RLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRL 90 (236)
T ss_dssp HHHHTTTTCCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhccccCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhh
Confidence 344444444567788999999988 9999999999999999999999999999999999999999999999999887642
Q ss_pred C---CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhh-cccC
Q psy8497 87 P---VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLK-YLNM 159 (2355)
Q Consensus 87 r---~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr-~LdL 159 (2355)
. ..+.++|||+|+++|+.|+.+.+++++... ++.+..++|+..... ....++|+|+||++|...+... .+.+
T Consensus 91 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~ 169 (236)
T 2pl3_A 91 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHA 169 (236)
T ss_dssp TCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCC
T ss_pred cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCccc
Confidence 1 246789999999999999999999997655 688888888765331 1235799999999998887664 4567
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
..+++|||||||++.+++|...+..++..++...|+|+||||++..+..+...++.+|..+.+.
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 8899999999999999999999999999999999999999999999989889999988877654
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=256.28 Aligned_cols=207 Identities=25% Similarity=0.446 Sum_probs=175.8
Q ss_pred ccccCcccccCccc-CCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc----
Q psy8497 13 DVLSNIDVLFENDV-LIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL---- 86 (2355)
Q Consensus 13 ~~DSsiDkV~SFEe-LlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek---- 86 (2355)
+...-+++...|++ +.+.+ +++.|...||..|+++|.++++.+++++++|+.+|||+|||++|+++++..+...
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34445677889998 67777 9999999999999999999999999999999999999999999999998877531
Q ss_pred -CCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcccCcC
Q psy8497 87 -PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYLNMDS 161 (2355)
Q Consensus 87 -r~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~LdLSk 161 (2355)
...+.++|||+|+++|+.|+.+.++++. ..++.+..++|+....... ..++|+|+||++|..++....+.+..
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~ 167 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS--YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRS 167 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC--CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTT
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc--ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCccc
Confidence 1256789999999999999999999985 2367888888876544322 33799999999999998888888899
Q ss_pred ceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeec
Q psy8497 162 VRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR 221 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIr 221 (2355)
+++|||||||++.+.+|...+..++..++...|+|++|||++..+...+..++.+|..+.
T Consensus 168 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 168 ITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999998887764
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=258.36 Aligned_cols=204 Identities=35% Similarity=0.570 Sum_probs=174.2
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
.++..+|+++.+++ +++.|..+||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.. ...+.++|||
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil 104 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI-EFKETQALVL 104 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEE
T ss_pred CCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-cCCCceEEEE
Confidence 35578899999988 999999999999999999999999999999999999999999999999987653 2346789999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC-----CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK-----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi-----rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
+|+++|+.|+.+.+++++... ++.+..+.|+....... ..++|+|+||++|.+++....+.+..+++|||||||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 183 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 183 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH
T ss_pred ECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch
Confidence 999999999999999997665 67788888876543322 227999999999999998877788899999999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
++.+.+|...+..++..++...|+|++|||++..+...+..++.+|..+.+.
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999899999999999999999999999988877653
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=268.20 Aligned_cols=205 Identities=34% Similarity=0.514 Sum_probs=181.6
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTI 94 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVL 94 (2355)
+..+.+|+++.+.+ +++.|..+||..|+++|.++++.++.+ +++|+++|||+|||++|+++++..+.. ....+++|
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~-~~~~~~~l 166 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCL 166 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT-TSCSCCEE
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc-cCCCceEE
Confidence 34578899999988 999999999999999999999999987 899999999999999999999988763 23456899
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-CCCCcEEEECHHHHHHHHHh-hcccCcCceEEEecccch
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-irq~DILVTTPErLLDLLdr-r~LdLSkIdLLIVDEAHR 172 (2355)
||+|+++|+.|+.+.++.+....+++.+.++.|+...... ...++|||+||++|.+++.. ..+.+..+.+|||||||+
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 9999999999999999999888778899999888765433 34489999999999998865 566788999999999999
Q ss_pred hcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 173 LIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 173 LkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
|.+ .+|...+..++..++...|+|++|||++..+..++..++.+|..+.+.
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 997 688899999999999999999999999999999999999999887654
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=260.39 Aligned_cols=215 Identities=24% Similarity=0.444 Sum_probs=178.4
Q ss_pred CcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC--------
Q psy8497 17 NIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-------- 87 (2355)
Q Consensus 17 siDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-------- 87 (2355)
..++...|+++.+.+ +++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+....
T Consensus 18 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 97 (253)
T 1wrb_A 18 ATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 97 (253)
T ss_dssp CCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------C
T ss_pred CCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccc
Confidence 334678899999888 99999999999999999999999999999999999999999999999998876422
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCce
Q psy8497 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVR 163 (2355)
Q Consensus 88 ~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkId 163 (2355)
..++++|||+|+++|+.|+.+.++++.... ++.+..+.|+..... ....++|+|+||++|.+++....+.+..++
T Consensus 98 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 98 TAYPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 234689999999999999999999987665 678888888765432 123479999999999999988777888999
Q ss_pred EEEecccchhcccChHHHHHHHHHhC--CC--CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccc
Q psy8497 164 LFIMDEADKLINTGFVEDITWIYSQL--PP--MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGV 232 (2355)
Q Consensus 164 LLIVDEAHRLkN~GF~SrLeeILs~L--pp--nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seV 232 (2355)
+|||||||++.+.+|...+..++..+ +. ..|+|+||||++..+..++..++.++..+.+.........+
T Consensus 177 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i 249 (253)
T 1wrb_A 177 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSI 249 (253)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---------
T ss_pred EEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCc
Confidence 99999999999999999999999853 43 67999999999999999999999998888776554433333
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=246.93 Aligned_cols=197 Identities=34% Similarity=0.563 Sum_probs=172.3
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEccc
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPT 99 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVPT 99 (2355)
+|+++.+.+ +++.|...||..|+++|.++++.+++++++|+.+|||+|||++++++++..+... ...++++|||+|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 688898888 9999999999999999999999999999999999999999999999998887532 2346789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+.|+.+.+.++... +.+..+.|+...... ...++|+|+||++|..++....+.+..+++|||||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 99999999999998643 677788887643211 12378999999999999888777889999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeecc
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRP 222 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrV 222 (2355)
.++...+..++..++...|+|++|||++......+..++.+|..+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999989999999999999988999999998887654
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=252.32 Aligned_cols=200 Identities=33% Similarity=0.517 Sum_probs=173.9
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
...|+++.+++ +++.|...||..|+++|.++++.+++++++|+++|||+|||++++++++..+.. .....++|||+|+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt 91 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHT 91 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-CTTCCCEEEECSC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc-cCCCEEEEEEeCC
Confidence 35699999888 999999999999999999999999999999999999999999999999887652 2234589999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
++|+.|+.+.++++....+++.+..+.|+...... ...++|+|+||++|..++....+.+..+++|||||||++.
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 171 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 171 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHh
Confidence 99999999999999887778899999988653211 1236899999999999988877788999999999999998
Q ss_pred c-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeec
Q psy8497 175 N-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR 221 (2355)
Q Consensus 175 N-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIr 221 (2355)
+ .++...+..++..++...|+|++|||++......+..++.+|..+.
T Consensus 172 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 172 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 6 4677888889998988999999999999998899999998887664
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=260.37 Aligned_cols=203 Identities=24% Similarity=0.424 Sum_probs=178.4
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
.....+|+++.+.+ +++.|..+||..|+++|.++++.++.++++|+++|||+|||++|+++++..+... ..+.++|||
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-~~~~~~lil 117 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-PQRLFALVL 117 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-CCSSCEEEE
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-CCCceEEEE
Confidence 34578899999998 9999999999999999999999999999999999999999999999999887742 345679999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHh-hcccCcCceEEEecccc
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdr-r~LdLSkIdLLIVDEAH 171 (2355)
+|+++|+.|+.+.++++.... ++.+..++|+..... ....++|+|+||++|.+.+.. ..+.+..+++|||||||
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred eCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 999999999999999987665 778888888764321 123479999999999988876 45668889999999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeecc
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRP 222 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrV 222 (2355)
++.+.+|...+..++..++...|+|+||||++..+...+..++.+|..+.+
T Consensus 197 ~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 197 RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999989999999999999999999999999987754
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=251.16 Aligned_cols=207 Identities=23% Similarity=0.375 Sum_probs=175.1
Q ss_pred CcccccCcccC----CcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCC
Q psy8497 17 NIDVLFENDVL----IEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQP 91 (2355)
Q Consensus 17 siDkV~SFEeL----lLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qgg 91 (2355)
.+.++.+|+++ .+.+ +++.|...||..|+++|.++++.++.++++|+.+|||+|||++|+++++..+......+.
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 99 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF 99 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc
Confidence 45678889887 5666 999999999999999999999999999999999999999999999999988875445677
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC-----CCCCCcEEEECHHHHHHHHHhh--cccCcCceE
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-----PKRPVQIVVGSPGRIKQMIKLK--YLNMDSVRL 164 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-----qirq~DILVTTPErLLDLLdrr--~LdLSkIdL 164 (2355)
++|||+|+++|+.|+.+.+++++... ++.+..+.|+..... ....++|+|+||++|..++... .+.+..+++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 89999999999999999999997665 677777776543222 2344899999999999988775 467888999
Q ss_pred EEecccchhcc---cChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHHhccCCeeeccCC
Q psy8497 165 FIMDEADKLIN---TGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPED 224 (2355)
Q Consensus 165 LIVDEAHRLkN---~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkKfLrdPvIIrVes 224 (2355)
|||||||++.+ .+|...+..++..+ +...|+++||||++.++..++..++.+++.+.+..
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999987 46788888887775 45789999999999999999999999998877654
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=252.99 Aligned_cols=196 Identities=24% Similarity=0.422 Sum_probs=165.4
Q ss_pred cCcccCC--cHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC---CCCCeEEE
Q psy8497 22 FENDVLI--EKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP---VQQPQTII 95 (2355)
Q Consensus 22 ~SFEeLl--Lkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr---~qggRVLI 95 (2355)
..|+.+. +.+ +++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.... ..+.++||
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 3455544 555 99999999999999999999999999999999999999999999999998887422 24678999
Q ss_pred EcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhh-cccCcCceEEEeccc
Q psy8497 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLK-YLNMDSVRLFIMDEA 170 (2355)
Q Consensus 96 LVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr-~LdLSkIdLLIVDEA 170 (2355)
|+|+++|+.|+.+.+++++... ++.+..++|+...... ...++|+|+||++|...+... .+.+..+++||||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999998765 6788888887654321 123789999999998887664 356788999999999
Q ss_pred chhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCe
Q psy8497 171 DKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPL 218 (2355)
Q Consensus 171 HRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPv 218 (2355)
|++.+.+|...+..++..++...|+|+||||++..+..++..++..+.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999988888776543
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=285.17 Aligned_cols=324 Identities=12% Similarity=0.089 Sum_probs=207.8
Q ss_pred HHHHHHHCC-------CCCCcHHHHHHHHHHHc--------------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCC
Q psy8497 32 IRQGLQENG-------FVKESPIQMAAFPYVLN--------------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90 (2355)
Q Consensus 32 LLK~Lqa~G-------F~eLRPYQeEALn~LLS--------------GRNVILAAPTGSGKTLVALIAILerL~ekr~qg 90 (2355)
++..+..+- ...|+|||.+|++.++. ++++||+++||+|||++++ +++..+. .....
T Consensus 253 ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~-~l~~ll~-~~~~~ 330 (1038)
T 2w00_A 253 LLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSF-KAARLAT-ELDFI 330 (1038)
T ss_dssp HHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHH-HHHHHHT-TCTTC
T ss_pred HHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHH-HHHHHHH-hcCCC
Confidence 777776643 23699999999999875 3679999999999999874 5554443 22334
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CC-CCCCcEEEECHHHHHHHHHhhc--ccCcCce
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RP-KRPVQIVVGSPGRIKQMIKLKY--LNMDSVR 163 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kq-irq~DILVTTPErLLDLLdrr~--LdLSkId 163 (2355)
.++|||||+++|+.|+.+.+..+.... +.+..... .. ....+|+|+||++|..++.... ..+..+.
T Consensus 331 ~rvLvlvpr~eL~~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~ 403 (1038)
T 2w00_A 331 DKVFFVVDRKDLDYQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQV 403 (1038)
T ss_dssp CEEEEEECGGGCCHHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCE
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhcccccc
Confidence 689999999999999999998875321 11211110 00 1347899999999988776432 1345788
Q ss_pred EEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHH----HHHHHhccCCeeeccCC----CccccccceEE
Q psy8497 164 LFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNL----ATLQKYMVDPLLIRPED----ATRPLLGVKQL 235 (2355)
Q Consensus 164 LLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EIL----ElLkKfLrdPvIIrVes----ee~~~seVrQv 235 (2355)
+|||||||++... ..+..+...++ ..++|+|||||..... .....++..+ +..... ......++...
T Consensus 404 lvIiDEAHrs~~~---~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~dg~l~p~~v~ 478 (1038)
T 2w00_A 404 VFIFDECHRSQFG---EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRDEKVLKFKVD 478 (1038)
T ss_dssp EEEEESCCTTHHH---HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHHTSSCCEEEE
T ss_pred EEEEEccchhcch---HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhCCCcCCeEEE
Confidence 9999999997632 33455666665 5799999999974321 0111111111 110000 00000011100
Q ss_pred EEec---------c-C------C-CCCcchhhhHHHH----HHHHHh-c-------CCCCeEEEEEcccccHHHHHHHHH
Q psy8497 236 VALI---------P-E------C-KNPSLRYVDEEKK----LVQLLS-Q-------TPFNQCVIFSNYQLRPEVICENLA 286 (2355)
Q Consensus 236 VvqV---------p-e------~-kn~sLt~lsKkea----LLqLLe-r-------l~kgRVLVFSQTRKmAEiLADyLr 286 (2355)
+..+ . . . ....+........ ++..+. . ....++||||.++..|..++..|.
T Consensus 479 y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~ 558 (1038)
T 2w00_A 479 YNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFK 558 (1038)
T ss_dssp ECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHH
T ss_pred EEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHH
Confidence 0000 0 0 0 0000111111122 222221 1 123589999999999999999998
Q ss_pred hcC------------CccE-EeeCC----------C----------CH-----------------------------HHH
Q psy8497 287 NAN------------FGAE-YLSGA----------Q----------DQ-----------------------------KAR 304 (2355)
Q Consensus 287 ErG------------IKVa-rLHGg----------M----------Sq-----------------------------EER 304 (2355)
..+ +++. .+|+. | ++ .+|
T Consensus 559 ~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R 638 (1038)
T 2w00_A 559 RLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYY 638 (1038)
T ss_dssp HHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHH
T ss_pred hhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHH
Confidence 754 4554 44542 2 22 148
Q ss_pred HHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCc----cEEEEEEc
Q psy8497 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR----GLVITIVS 370 (2355)
Q Consensus 305 qeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQk----GkVIVLVS 370 (2355)
..++++|++++++|||+|+++.+|+|+|.+ .|+++|.|.+.+.|+|++||++|.+.. |.++.|+.
T Consensus 639 ~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 639 RDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 889999999999999999999999999999 677899999999999999999998743 55555554
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-24 Score=263.58 Aligned_cols=327 Identities=14% Similarity=0.162 Sum_probs=229.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+.-.|.+|+ |..+.||.|||+++.+|++.... .+..+.||+|+..||.|-.+|+..+..++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL----~G~~vhVvT~ndyLA~rdae~m~~l~~~L- 143 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL----IGKGVHLVTVNDYLARRDALWMGPVYLFL- 143 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT----TSSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh----cCCceEEEeccHHHHHhHHHHHHHHHHHh-
Confidence 676 89999999999888887 99999999999999999874333 26779999999999999999999999888
Q ss_pred CcEEEEEECCc------------------------------------------------cccCCC----CCCcEEEECHH
Q psy8497 119 NLHVDYFIGGT------------------------------------------------QVERPK----RPVQIVVGSPG 146 (2355)
Q Consensus 119 gLrVVvytGGk------------------------------------------------q~rkqi----rq~DILVTTPE 146 (2355)
++.|.+++... ...... -.++|+++|..
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~ 223 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNN 223 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHH
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCc
Confidence 99999988721 000000 01899999987
Q ss_pred HHH-HHHHhh------cccCcCceEEEecccchhc-ccC---------------hHHHHHHHHHhCC-------------
Q psy8497 147 RIK-QMIKLK------YLNMDSVRLFIMDEADKLI-NTG---------------FVEDITWIYSQLP------------- 190 (2355)
Q Consensus 147 rLL-DLLdrr------~LdLSkIdLLIVDEAHRLk-N~G---------------F~SrLeeILs~Lp------------- 190 (2355)
-|- ++|... ..-.+.+.+.||||++.++ +.. .+..+..++..+.
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 653 455432 2234678899999999753 110 1111111111110
Q ss_pred -------------------------------------------C------------------------------------
Q psy8497 191 -------------------------------------------P------------------------------------ 191 (2355)
Q Consensus 191 -------------------------------------------p------------------------------------ 191 (2355)
.
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence 0
Q ss_pred -------------------------CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceE-EEEeccCCCCC
Q psy8497 192 -------------------------MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQ-LVALIPECKNP 245 (2355)
Q Consensus 192 -------------------------nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQ-vVvqVpe~kn~ 245 (2355)
..++.+||+|+..+..++...|-. .++ .++... +...+.+ ...+
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l-~vv-~IPtnk-p~~R~d~~d~vy------- 453 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM-EVV-VIPTHK-PMIRKDHDDLVF------- 453 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC-CEE-ECCCSS-CCCCEECCCEEE-------
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC-eEE-EECCCC-CcceeecCcEEE-------
Confidence 014567777777655444433322 222 222111 1111111 0111
Q ss_pred cchhhhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec
Q psy8497 246 SLRYVDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323 (2355)
Q Consensus 246 sLt~lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS 323 (2355)
.....+...|+..+... ...+|||||.+++.++.|+..|...|+.+..|||++...++..+...|+.| .|||||+
T Consensus 454 -~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATd 530 (822)
T 3jux_A 454 -RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATN 530 (822)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEET
T ss_pred -ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcc
Confidence 11224555666655432 346899999999999999999999999999999997777776667777666 6999999
Q ss_pred ccccccCCC--------CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH-------HHHHHHhhcc
Q psy8497 324 LAARGIDAA--------NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK-------FHSLMGEINL 386 (2355)
Q Consensus 324 ALGEGLDLP--------aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe-------IEsLrReLKL 386 (2355)
++++|+||+ ...+||+++.|.++..|+|++||+||.|.+|.+++|++..+..+ +..++..+++
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~ 608 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSC
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCC
Confidence 999999998 56799999999999999999999999999999999998877443 4455555443
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=265.46 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=116.7
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC--
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI-- 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS-- 342 (2355)
..++||||+++.+++.|+++|...|+.+.++||+|++.+|..+++.|+.|.++|||||+++++|||+|.+++||+++.
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADK 518 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTS
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcc
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH-----hhccccccccCCCccchhhhhhhHHHHHHHHH
Q psy8497 343 ---PHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG-----EINLDHAFNVGLVPDNLTGDQINWTQRVQTLL 414 (2355)
Q Consensus 343 ---P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR-----eLKLKLaLe~eIVPkgLlKeqiDw~~~LERIL 414 (2355)
|.++.+|+||+|||||. ..|.+++|+...+..+...+.. .....+.....++|..+.+...+... .
T Consensus 519 ~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~p~~~~~~i~~~~~-~---- 592 (664)
T 1c4o_A 519 EGFLRSERSLIQTIGRAARN-ARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIR-P---- 592 (664)
T ss_dssp CSGGGSHHHHHHHHGGGTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC---------------
T ss_pred cCCCCCHHHHHHHHCccCcC-CCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhh-h----
Confidence 88999999999999997 4799999998887766555432 23333444455566655554432221 0
Q ss_pred hCCccHHHHHHHHHHHHHHHHHHhhcCCccCCCChhhhhcccccccCcccccccccccc
Q psy8497 415 AKPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEE 473 (2355)
Q Consensus 415 KnPLdeeqErEELEQLeeElkKIEneLkeLga~~kEaaeKe~~KeAakWrdddGQlEEE 473 (2355)
... .. ..... .....++++.+..+...|.++...+.++.++.+++...+++..
T Consensus 593 ~~~-~~---~~~~~--~~~~~~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~ 645 (664)
T 1c4o_A 593 EGY-EE---APLEA--DLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEAR 645 (664)
T ss_dssp -----------------------------------------------------------
T ss_pred hhc-ch---hhhhh--hcCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 000 00 00000 1122344555666777788888888889999988887666543
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.1e-23 Score=253.45 Aligned_cols=203 Identities=14% Similarity=0.168 Sum_probs=135.9
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC--
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI-- 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS-- 342 (2355)
..++||||+++.+++.|+++|...|+.+.++||+|++.+|..+++.|+.|.++|||||+++++|||+|.+++||+++.
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK 524 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCccc
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH-----hhccccccccCCCccchhhhhhhHHHHHHHHH
Q psy8497 343 ---PHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG-----EINLDHAFNVGLVPDNLTGDQINWTQRVQTLL 414 (2355)
Q Consensus 343 ---P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR-----eLKLKLaLe~eIVPkgLlKeqiDw~~~LERIL 414 (2355)
|.++..|+||+|||||. ..|.+++|+...+..+...+.. .....+.....++|..+.+...+... .....
T Consensus 525 ~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~~~i~~~~~-~~~~~ 602 (661)
T 2d7d_A 525 EGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIR-ATVAA 602 (661)
T ss_dssp CTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC-------------
T ss_pred ccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhHHHHHHh-hcccc
Confidence 88999999999999997 7899999998877766544422 22233333444555554444432221 00000
Q ss_pred hCCcc-HHHHHHHHHHHHHHHHHHhhcCCccCCCChhhhhcccccccCcccccccccc
Q psy8497 415 AKPLD-QAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSE 471 (2355)
Q Consensus 415 KnPLd-eeqErEELEQLeeElkKIEneLkeLga~~kEaaeKe~~KeAakWrdddGQlE 471 (2355)
..... ......... .....++.+.+..+...|.++...+.|+.++.+++....++
T Consensus 603 ~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~ 658 (661)
T 2d7d_A 603 EDKAEYKTKAAPKLS--KMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELK 658 (661)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC----
T ss_pred ccccccchhhhhhhh--hCCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 00000 000000000 00111222333334445666677777888888877665543
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=237.11 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=109.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|+++|..+++.+++|+ |..+.||+|||++++++++.... .+..++||+||+.||.|..+|+..++.++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL----~G~qv~VvTPTreLA~Qdae~m~~l~~~l- 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL----TGKGVHVVTVNDYLARRDAEWMGPVYRGL- 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT----TCSCCEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH----hCCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 899 99999999999999998 99999999999999999964333 25679999999999999999999999888
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHH-HHHHHhhc------ccCc---CceEEEecccchhc
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRI-KQMIKLKY------LNMD---SVRLFIMDEADKLI 174 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErL-LDLLdrr~------LdLS---kIdLLIVDEAHRLk 174 (2355)
++++.+++|+.... .....++|+|+||..| ++++.... +.+. .+.++||||+|.++
T Consensus 148 GLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred CCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 89999999986432 1122389999999999 78887653 4566 89999999999876
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=197.93 Aligned_cols=153 Identities=29% Similarity=0.504 Sum_probs=137.1
Q ss_pred cccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHH
Q psy8497 229 LLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASL 308 (2355)
Q Consensus 229 ~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeIL 308 (2355)
...+.+.+..++.. .+...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..++
T Consensus 7 ~~~i~~~~~~~~~~--------~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 78 (163)
T 2hjv_A 7 TRNIEHAVIQVREE--------NKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVM 78 (163)
T ss_dssp CCCEEEEEEECCGG--------GHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cccceEEEEECChH--------HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 34466666666543 3667777777776777999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 309 DSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 309 ErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
+.|++|.++|||||+++++|||+|.+++||++++|+++..|+||+||+||.|+++.+++|+...+...+..+.+.++.++
T Consensus 79 ~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 158 (163)
T 2hjv_A 79 NEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEI 158 (163)
T ss_dssp HHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCC
T ss_pred HHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888887766554
Q ss_pred c
Q psy8497 389 A 389 (2355)
Q Consensus 389 a 389 (2355)
.
T Consensus 159 ~ 159 (163)
T 2hjv_A 159 Q 159 (163)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=196.53 Aligned_cols=154 Identities=27% Similarity=0.528 Sum_probs=134.3
Q ss_pred cccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHH
Q psy8497 229 LLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASL 308 (2355)
Q Consensus 229 ~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeIL 308 (2355)
...+.+.+..++.. ..+...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..++
T Consensus 5 ~~~i~q~~~~~~~~-------~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~ 77 (175)
T 2rb4_A 5 LNNIRQYYVLCEHR-------KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASII 77 (175)
T ss_dssp BCCEEEEEEECSSH-------HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHH
T ss_pred cCCceEEEEEcCCh-------HhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 34566777666543 23667788888877778999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccEEEEecccccccCCCCccEEEEecCC------CCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 309 DSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 309 ErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP------~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+.|++|.++|||||+++++|||+|.+++||++|.| .++..|+||+||+||.|+.|.+++|+...+...+..+.+
T Consensus 78 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~ 157 (175)
T 2rb4_A 78 QRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQD 157 (175)
T ss_dssp HHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHH
T ss_pred HHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHH
Confidence 99999999999999999999999999999999999 899999999999999999999999999999888888888
Q ss_pred hhccccc
Q psy8497 383 EINLDHA 389 (2355)
Q Consensus 383 eLKLKLa 389 (2355)
.++..+.
T Consensus 158 ~~~~~~~ 164 (175)
T 2rb4_A 158 HFNSSIK 164 (175)
T ss_dssp HHTCCCE
T ss_pred HhcCccc
Confidence 7766554
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=203.33 Aligned_cols=165 Identities=26% Similarity=0.405 Sum_probs=126.3
Q ss_pred HHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC
Q psy8497 210 LQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN 289 (2355)
Q Consensus 210 LkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG 289 (2355)
.+.++.+|..+.+.........+.+.+..++.. .+...|..++.... .++||||+++..++.|+..|...+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~--------~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g 78 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEE--------AKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKG 78 (191)
T ss_dssp --------------------CCSEEEEEECCGG--------GHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChH--------HHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcC
Confidence 346777888887776666667788887776543 46677888877653 589999999999999999999999
Q ss_pred CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEE
Q psy8497 290 FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV 369 (2355)
Q Consensus 290 IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLV 369 (2355)
+.+..+||+|++.+|..+++.|++|.+.|||||+++++|||+|.+++||++|+|+++..|+||+||+||.|+.|.+++|+
T Consensus 79 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~ 158 (191)
T 2p6n_A 79 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFI 158 (191)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEE
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-CHHHHHHHHHh
Q psy8497 370 SAE-SLVKFHSLMGE 383 (2355)
Q Consensus 370 Ssd-DVEeIEsLrRe 383 (2355)
... +...+..+...
T Consensus 159 ~~~~~~~~~~~l~~~ 173 (191)
T 2p6n_A 159 NKACDESVLMDLKAL 173 (191)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHH
Confidence 875 56555555443
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-21 Score=195.07 Aligned_cols=153 Identities=31% Similarity=0.493 Sum_probs=131.3
Q ss_pred ceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHH
Q psy8497 232 VKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSF 311 (2355)
Q Consensus 232 VrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErF 311 (2355)
+.+.+..++.. ..+...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.|
T Consensus 4 i~~~~~~~~~~-------~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 76 (165)
T 1fuk_A 4 IKQFYVNVEEE-------EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 76 (165)
T ss_dssp CEEEEEEEESG-------GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEECCcc-------hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 45555555433 12667788888877778999999999999999999999999999999999999999999999
Q ss_pred hCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccc
Q psy8497 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFN 391 (2355)
Q Consensus 312 RSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe 391 (2355)
++|.++|||||+++++|||+|.+++||++|.|+++..|+||+||+||.|+.|.+++|+...+...+..+...+...+...
T Consensus 77 ~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (165)
T 1fuk_A 77 RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEEL 156 (165)
T ss_dssp HTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEEC
T ss_pred HcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888887766665433
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=199.24 Aligned_cols=168 Identities=19% Similarity=0.219 Sum_probs=120.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEcccHHHHHH-HHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPTREIAVQ-ITD 108 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVPTRALAqQ-~an 108 (2355)
+...........|+++|.++++.+++++++||.+|||+|||++++++++..+... .....++|||||+++|+.| +.+
T Consensus 22 ~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 22 VAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp HHHHTCCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHH
T ss_pred hhcccCccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHH
Confidence 4444444555699999999999999999999999999999999999888776532 1336789999999999999 888
Q ss_pred HHHHHhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhc------ccCcCceEEEecccchhcccCh
Q psy8497 109 VVRSVGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKY------LNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 109 wLREFgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~------LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
++.++... ++.+..+.|+....... ..++|+|+||++|...+.... +.+..+++|||||||++...++
T Consensus 102 ~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~ 179 (216)
T 3b6e_A 102 EFQPFLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV 179 (216)
T ss_dssp THHHHHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------C
T ss_pred HHHHHhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCc
Confidence 88888654 57788888876543321 127899999999988877542 4568899999999999987655
Q ss_pred HHHHH-HHHHhC-------------CCCceEEEEEec
Q psy8497 179 VEDIT-WIYSQL-------------PPMKQMLVVSAT 201 (2355)
Q Consensus 179 ~SrLe-eILs~L-------------ppnrQILLLSAT 201 (2355)
+..+. .++... .+..++|+||||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 180 YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 55443 222221 156899999998
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=196.06 Aligned_cols=151 Identities=35% Similarity=0.566 Sum_probs=133.0
Q ss_pred cceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHH
Q psy8497 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310 (2355)
Q Consensus 231 eVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILEr 310 (2355)
.+.+.+..++.. .+...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.
T Consensus 5 ~i~q~~~~~~~~--------~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~ 76 (172)
T 1t5i_A 5 GLQQYYVKLKDN--------EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQ 76 (172)
T ss_dssp CCEEEEEECCGG--------GHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEEECChH--------HHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHH
Confidence 456666665543 466778888887777899999999999999999999999999999999999999999999
Q ss_pred HhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc-CHHHHHHHHHhhccccc
Q psy8497 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE-SLVKFHSLMGEINLDHA 389 (2355)
Q Consensus 311 FRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd-DVEeIEsLrReLKLKLa 389 (2355)
|++|.+.|||||+++++|||+|.+++||++|.|+++..|+||+||+||.|+.+.+++|+... +...+..+...+..++.
T Consensus 77 f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (172)
T 1t5i_A 77 FKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS 156 (172)
T ss_dssp HHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEE
T ss_pred HHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999865 45566667666555543
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-20 Score=222.59 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEE--EecccccccCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV--TTDLAARGIDA 331 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLV--STSALGEGLDL 331 (2355)
..|..++.. ..+++|||+++...++.+.+.|.. + ..++++.. .+|..+++.|+.+. .||+ +|..+.+|||+
T Consensus 374 ~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 374 ILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 444455544 456999999999999999988865 2 24555553 46889999999864 5776 78999999999
Q ss_pred CC----ccEEEEecCCCC-H-----------------------------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 332 AN----VDLVINLEIPHD-A-----------------------------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 332 Pa----VDTVIIyDSP~S-P-----------------------------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
|+ +++||+++.|+. + ..+.|++||+.|...+.-+|++++.
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 97 899999999972 1 2356999999997555555656543
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-20 Score=197.67 Aligned_cols=142 Identities=30% Similarity=0.464 Sum_probs=129.6
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccC
Q psy8497 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGID 330 (2355)
Q Consensus 251 sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLD 330 (2355)
.+...|..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||
T Consensus 17 ~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 96 (212)
T 3eaq_A 17 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLD 96 (212)
T ss_dssp SHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSS
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCC
Confidence 36677777877767789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccccccc
Q psy8497 331 AANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNV 392 (2355)
Q Consensus 331 LPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~ 392 (2355)
+|.+++||+++.|+++..|+||+|||||.|+.|.+++|+...+...+..+.+.++..+....
T Consensus 97 i~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 97 IPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 158 (212)
T ss_dssp CCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECC
T ss_pred CccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecC
Confidence 99999999999999999999999999999999999999999999999998887776665433
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=196.29 Aligned_cols=149 Identities=30% Similarity=0.501 Sum_probs=118.6
Q ss_pred cccceEEEEeccCCCCCcchhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHH
Q psy8497 229 LLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307 (2355)
Q Consensus 229 ~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeI 307 (2355)
...+.+.+..++.. .+...|..++... ...++||||+++..++.|+..|...++.+..+||+|+..+|..+
T Consensus 17 ~~~i~q~~~~v~~~--------~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~ 88 (185)
T 2jgn_A 17 SENITQKVVWVEES--------DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 88 (185)
T ss_dssp CTTEEEEEEECCGG--------GHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHH
T ss_pred CCCceEEEEEeCcH--------HHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHH
Confidence 45677777776543 3667777777766 45799999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 308 LErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
++.|++|.++|||||+++++|||+|.+++||++|+|+++..|+||+||+||.|+.|.+++|+...+...+..+...+.
T Consensus 89 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 89 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp HHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888777776665443
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-18 Score=204.68 Aligned_cols=309 Identities=13% Similarity=0.117 Sum_probs=197.4
Q ss_pred CCcHHHHHHHHHH----HcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYV----LNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~L----LSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+++|+|.+.+..+ ..++++|+.+|||+|||++|+++++. ...++||++||++|+.|+.+.+..+....
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~- 74 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIREKR- 74 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCCSS-
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhhhc-
Confidence 7999999977654 46889999999999999999999986 25789999999999999999888876555
Q ss_pred CcEEEEEECCcccc-------------------------------------------------------CCCCCCcEEEE
Q psy8497 119 NLHVDYFIGGTQVE-------------------------------------------------------RPKRPVQIVVG 143 (2355)
Q Consensus 119 gLrVVvytGGkq~r-------------------------------------------------------kqirq~DILVT 143 (2355)
+++++++.|..... .....++|||+
T Consensus 75 ~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~ 154 (551)
T 3crv_A 75 NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIAL 154 (551)
T ss_dssp CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEE
T ss_pred CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEe
Confidence 67888877743210 00123699999
Q ss_pred CHHHHHHHHHhhcccC-cCceEEEecccchhcccCh--------------------------------------------
Q psy8497 144 SPGRIKQMIKLKYLNM-DSVRLFIMDEADKLINTGF-------------------------------------------- 178 (2355)
Q Consensus 144 TPErLLDLLdrr~LdL-SkIdLLIVDEAHRLkN~GF-------------------------------------------- 178 (2355)
||..|++...+..+.+ ....+|||||||.|.+ ..
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~ 233 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEK 233 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSS
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999987654443332 4677899999999765 10
Q ss_pred -----------HHHHH----------------------------HHHH----------------------------hCCC
Q psy8497 179 -----------VEDIT----------------------------WIYS----------------------------QLPP 191 (2355)
Q Consensus 179 -----------~SrLe----------------------------eILs----------------------------~Lpp 191 (2355)
...+. .++. .+..
T Consensus 234 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~ 313 (551)
T 3crv_A 234 YIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLND 313 (551)
T ss_dssp CEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGC
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhc
Confidence 00000 0000 0112
Q ss_pred C-ceEEEEEeccChhHHHHHHHhccCC--eee--ccCCCccccccceEEEEeccCCCCCcc-----h-hhhHHHHHHHHH
Q psy8497 192 M-KQMLVVSATYSHDNLATLQKYMVDP--LLI--RPEDATRPLLGVKQLVALIPECKNPSL-----R-YVDEEKKLVQLL 260 (2355)
Q Consensus 192 n-rQILLLSATLS~EILElLkKfLrdP--vII--rVesee~~~seVrQvVvqVpe~kn~sL-----t-~lsKkeaLLqLL 260 (2355)
. ..+|++|||+.+ ...+...+.-+ ... .......+. ..+....++....... . .......|..++
T Consensus 314 ~~~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~ 389 (551)
T 3crv_A 314 NELSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIY 389 (551)
T ss_dssp TTCEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHH
Confidence 2 578899999885 33333333221 210 000011111 2333333332211111 1 122334455555
Q ss_pred hcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe--cccccccCCC-----C
Q psy8497 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT--DLAARGIDAA-----N 333 (2355)
Q Consensus 261 erl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST--SALGEGLDLP-----a 333 (2355)
... .+++|||+++...++.+.+. .+..+..-..+++ +..+++.|+...-.||++| ....+|||+| .
T Consensus 390 ~~~-~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~ 462 (551)
T 3crv_A 390 FQA-KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSL 462 (551)
T ss_dssp HHC-SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEES
T ss_pred HhC-CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcc
Confidence 544 46999999999999998873 3333332222444 4557778864344799998 6899999999 4
Q ss_pred ccEEEEecCCCC--------------------H----------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 334 VDLVINLEIPHD--------------------A----------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 334 VDTVIIyDSP~S--------------------P----------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+.+||+...|+. . ..+.|.+||+-|...+.-+|++++.
T Consensus 463 l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 463 ISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred eeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 789999988862 1 1235999999997666666666654
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=196.86 Aligned_cols=153 Identities=17% Similarity=0.151 Sum_probs=122.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
+|++||.+++++++.+.++||++|||+|||+++++++...+.. ..+++|||||+++|+.||.+.+.+++... .+.+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQMADDFVDYRLFS-HAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH---CSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHhcccc-cceE
Confidence 8999999999999988889999999999999998877766553 24589999999999999999999986443 5667
Q ss_pred EEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 123 DYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 123 VvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
..+.++..... .....+|+|+||+.|.... ...+..+++|||||||++.+ ..+..++..+....++|+||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSAT 261 (282)
T 1rif_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGS 261 (282)
T ss_dssp EECSTTCSSTTCCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSS
T ss_pred EEEeCCCcchhhhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCC
Confidence 77777654432 2245889999999874331 22457889999999999874 3666777777778999999999
Q ss_pred cChhH
Q psy8497 202 YSHDN 206 (2355)
Q Consensus 202 LS~EI 206 (2355)
|....
T Consensus 262 p~~~~ 266 (282)
T 1rif_A 262 LRDGK 266 (282)
T ss_dssp CCTTS
T ss_pred CCCcc
Confidence 98653
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=199.13 Aligned_cols=142 Identities=30% Similarity=0.458 Sum_probs=126.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 252 EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 252 KkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
+...|..++......++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+
T Consensus 15 K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi 94 (300)
T 3i32_A 15 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDI 94 (300)
T ss_dssp HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccc
Confidence 56677777776667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccC
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVG 393 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~e 393 (2355)
|.+++||+++.|+++..|+||+|||||.|+.|.+++|+...+...+..+.+.++..+.....
T Consensus 95 ~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 95 PQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp CCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred cceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 99999999999999999999999999999999999999999999999998887776654433
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-20 Score=195.02 Aligned_cols=136 Identities=32% Similarity=0.517 Sum_probs=122.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 252 EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 252 KkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
+...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+
T Consensus 17 k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~ 96 (170)
T 2yjt_D 17 KTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDI 96 (170)
Confidence 44556666666666799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccc
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLD 387 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLK 387 (2355)
|.+++||+++.|+++..|+||+||+||.|+.+.+++|+...+...+..+.+.+...
T Consensus 97 ~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 97 PDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 99999999999999999999999999999999999999888777777666544433
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=176.05 Aligned_cols=162 Identities=16% Similarity=0.223 Sum_probs=121.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc-CCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL-PVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek-r~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
....++++|.++++.+..+++++|.+|||+|||+++.++++..+... ......+|+++|+++|+.|+.+.+........
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 34468999999999999999999999999999988887877765532 12245899999999999999888877654433
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh-cccChH-HHHHHHHHhCCCCceEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL-INTGFV-EDITWIYSQLPPMKQML 196 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL-kN~GF~-SrLeeILs~LppnrQIL 196 (2355)
+..+........ .......+|+|+||++|.+++.. .+..+++|||||+|++ .+.++. ..+..++... +..|+|
T Consensus 138 ~~~~g~~~~~~~-~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~i 212 (235)
T 3llm_A 138 GKSCGYSVRFES-ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIV 212 (235)
T ss_dssp TSSEEEEETTEE-ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEE
T ss_pred CceEEEeechhh-ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEE
Confidence 444443322221 11123478999999999988865 4788999999999985 555555 4555555555 578999
Q ss_pred EEEeccChhH
Q psy8497 197 VVSATYSHDN 206 (2355)
Q Consensus 197 LLSATLS~EI 206 (2355)
++|||++.+.
T Consensus 213 l~SAT~~~~~ 222 (235)
T 3llm_A 213 LMSATIDTSM 222 (235)
T ss_dssp EEECSSCCHH
T ss_pred EEecCCCHHH
Confidence 9999999765
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-18 Score=189.01 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhc-CCccEEeeCCCCHHHHHHHHHHHhCC-Ccc-EEEEeccc
Q psy8497 251 DEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRG-KVR-ILVTTDLA 325 (2355)
Q Consensus 251 sKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrEr-GIKVarLHGgMSqEERqeILErFRSG-EId-VLVSTSAL 325 (2355)
.+...|..++... ...++||||+++.+++.|..+|... |+.+.++||+++..+|..+++.|+++ .+. +||+|+++
T Consensus 96 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~ 175 (271)
T 1z5z_A 96 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG 175 (271)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhh
Confidence 4556666666544 4579999999999999999999985 99999999999999999999999988 677 78999999
Q ss_pred ccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE--EEEEEcccCHHH
Q psy8497 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL--VITIVSAESLVK 376 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk--VIVLVSsdDVEe 376 (2355)
++||||+.+++||+||+||||..++||+||++|+|+... ++.|+...+.++
T Consensus 176 g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 176 GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp CCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred cCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 999999999999999999999999999999999997654 556666666554
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=175.42 Aligned_cols=139 Identities=21% Similarity=0.184 Sum_probs=108.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE-
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH- 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr- 121 (2355)
.|+++|.+++..++.+.++||++|||+|||++++.++... +.++|||||+++|+.||.+.+.+| ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~-----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF-----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG-----CGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC-----CCCe
Confidence 7899999999999998889999999999999887665432 567999999999999999988874 456
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
+..+.|+... ..+|+|+||+.+...... + ...+++|||||+|++.+..+. .++..++ ..++|+||||
T Consensus 161 v~~~~g~~~~-----~~~i~v~T~~~l~~~~~~--~-~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LSAT 227 (237)
T 2fz4_A 161 VGEFSGRIKE-----LKPLTVSTYDSAYVNAEK--L-GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLTAT 227 (237)
T ss_dssp EEEESSSCBC-----CCSEEEEEHHHHHHTHHH--H-TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEEES
T ss_pred EEEEeCCCCC-----cCCEEEEeHHHHHhhHHH--h-cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEecC
Confidence 7777776543 367999999998655432 1 245889999999999876543 3445554 6789999999
Q ss_pred cChhH
Q psy8497 202 YSHDN 206 (2355)
Q Consensus 202 LS~EI 206 (2355)
|....
T Consensus 228 p~r~D 232 (237)
T 2fz4_A 228 FERED 232 (237)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 98543
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-15 Score=184.60 Aligned_cols=316 Identities=13% Similarity=0.125 Sum_probs=190.3
Q ss_pred CCCcHHHHHHHHH----HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPY----VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~----LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|+|.|.+.+.. +..++++|+.+|||+|||++++++++..+.. .+.++||++||++|+.|+.+.+..+....
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---~~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---RKLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---cCCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 3689999998864 4568999999999999999999999988763 35789999999999999999998886543
Q ss_pred CCcEEEEEECCccccC------------------------------------------C---------------------
Q psy8497 118 KNLHVDYFIGGTQVER------------------------------------------P--------------------- 134 (2355)
Q Consensus 118 PgLrVVvytGGkq~rk------------------------------------------q--------------------- 134 (2355)
.++++++.|....-. .
T Consensus 79 -~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~ 157 (620)
T 4a15_A 79 -KIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDY 157 (620)
T ss_dssp -CCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHH
T ss_pred -CeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHH
Confidence 566665554321000 0
Q ss_pred ---------------CCCCcEEEECHHHHHHHHHhhc----c-cCcCceEEEecccchhccc------------------
Q psy8497 135 ---------------KRPVQIVVGSPGRIKQMIKLKY----L-NMDSVRLFIMDEADKLINT------------------ 176 (2355)
Q Consensus 135 ---------------irq~DILVTTPErLLDLLdrr~----L-dLSkIdLLIVDEAHRLkN~------------------ 176 (2355)
...++|||++|..|++..-+.. + ....-.+|||||||.|.+.
T Consensus 158 ~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~ 237 (620)
T 4a15_A 158 GERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRAD 237 (620)
T ss_dssp HHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHH
T ss_pred hhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHH
Confidence 0017899999998765443221 1 1234568999999997431
Q ss_pred --------Ch----------HHH----HHH------------------------------------------HHH-----
Q psy8497 177 --------GF----------VED----ITW------------------------------------------IYS----- 187 (2355)
Q Consensus 177 --------GF----------~Sr----Lee------------------------------------------ILs----- 187 (2355)
.+ ... +.. +..
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 317 (620)
T 4a15_A 238 REAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENE 317 (620)
T ss_dssp HHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhh
Confidence 00 000 000 000
Q ss_pred --------------------h---CCC------------------------------CceEEEEEeccChhHHHHHHHhc
Q psy8497 188 --------------------Q---LPP------------------------------MKQMLVVSATYSHDNLATLQKYM 214 (2355)
Q Consensus 188 --------------------~---Lpp------------------------------nrQILLLSATLS~EILElLkKfL 214 (2355)
. ... ...+|++|||+.+ ...+...+
T Consensus 318 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p--~~~~~~~l 395 (620)
T 4a15_A 318 KEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP--FDFYSDIT 395 (620)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS--HHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc--HHHHHHHh
Confidence 0 000 1134788899875 33333323
Q ss_pred cC-CeeeccCCCccccccceEEEEeccCCCC-----CcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc
Q psy8497 215 VD-PLLIRPEDATRPLLGVKQLVALIPECKN-----PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA 288 (2355)
Q Consensus 215 rd-PvIIrVesee~~~seVrQvVvqVpe~kn-----~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr 288 (2355)
.- ...+.... +...-.+.+........ ...........|..++... .+++|||+++...++.+.+.|..
T Consensus 396 Gl~~~~~~~~s---pf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~- 470 (620)
T 4a15_A 396 GFEIPFKKIGE---IFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIVYFPSYSLMDRVENRVSF- 470 (620)
T ss_dssp CCCCCEEECCC---CSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHTSSCCS-
T ss_pred CCCceeeecCC---CCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCHHHHHHHHHHHHh-
Confidence 22 11122111 11111122222221111 0101112224455555544 35799999999999999988872
Q ss_pred CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec--ccccccCCCC--ccEEEEecCCCCH------------------
Q psy8497 289 NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD--LAARGIDAAN--VDLVINLEIPHDA------------------ 346 (2355)
Q Consensus 289 GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS--ALGEGLDLPa--VDTVIIyDSP~SP------------------ 346 (2355)
+... ..-+++..++..+++.|+ +.-.||++|. .+.+|||+|. +.+||+...|+.+
T Consensus 471 -~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 471 -EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp -CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred -cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 3323 455566678999999999 8888999985 8999999998 6789999998731
Q ss_pred -----------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 347 -----------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 347 -----------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
..+.|.+||+-|.-.+.-++++++.
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1236999999997766667777654
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=98.84 E-value=9.6e-09 Score=120.16 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=90.7
Q ss_pred HHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccC----
Q psy8497 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGID---- 330 (2355)
Q Consensus 255 aLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLD---- 330 (2355)
.|+..+.. ..++||||+++.++++.|.++|..+++++.+++|.....+ .+. .+..+.|.+.|.+++.|+|
T Consensus 116 ~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~~gin~~~~ 189 (328)
T 3hgt_A 116 DLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGINFTKYPIK 189 (328)
T ss_dssp HHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCC
T ss_pred HHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCCCCcCcccc
Confidence 33333333 3569999999999999999999999999999999855432 221 2445566666888888886
Q ss_pred -CCCccEEEEecCCCCHhHH-HHHhhccCCCC----CccEEEEEEcccCHHHHHHHH
Q psy8497 331 -AANVDLVINLEIPHDAATY-LHRMGRAGRYG----TRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 331 -LPaVDTVIIyDSP~SPqSY-IQRIGRAGRiG----QkGkVIVLVSsdDVEeIEsLr 381 (2355)
+..+++||+||++|||+.. +|++-|++|++ ++..|+.++...+++...-..
T Consensus 190 nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 190 SKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp CCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 7899999999999999998 99999999983 467888888888888765554
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.35 E-value=9.3e-07 Score=109.78 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHcCCcEEEEccCCchHHH--HHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSI--VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 45 RPYQeEALn~LLSGRNVILAAPTGSGKTL--VALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.+.|.+++..++.++.+||.+++|+|||. .+++.++..+. ...+.++++++||..++.++.+.+..+.... ++..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--~~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC--SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh--hcCCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCH
Confidence 68999999999999999999999999993 44444443321 1235689999999999999888877654433 1110
Q ss_pred EEEECCccccCCCCC-CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 123 DYFIGGTQVERPKRP-VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 123 VvytGGkq~rkqirq-~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
... . ........ ..++-.+|... .+.........+++|||||++++. ...+..++..++...|+|++.-.
T Consensus 228 ~~~-~--~~~~~~~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 228 EQK-K--RIPEDASTLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp CCC-C--SCSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHH-h--ccchhhhhhHhhhccCCCch--HHHhccCCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcch
Confidence 000 0 00000111 12222333321 111111223378899999999543 35667788888888999988754
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.82 E-value=1.8e-05 Score=98.41 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.|.+.|.+|+..++..++ .||.||.|+|||.+.+-.+...+. .+.++|+++||-..+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 589999999999987665 799999999999776555444443 3678999999999999988888765
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0002 Score=89.17 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
+..|++.|.+|+..++...-++|.+|.|+|||.+.. .++..+.. ..+.++|+++|+...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHT--SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHH--cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 356899999999999887779999999999997654 44445442 24678999999999999988887764
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00019 Score=85.88 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=80.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHc----CC-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLN----GY-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLS----GR-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~ 106 (2355)
+...+....|..|++-|.+++..++. +. .++|.|+.|+|||.+.. .++..|... ....+++++||...+..+
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~--~~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALIST--GETGIILAAPTHAAKKIL 90 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHT--TCCCEEEEESSHHHHHHH
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhc--CCceEEEecCcHHHHHHH
Confidence 44555667888999999999997653 23 79999999999996544 555555531 124799999999886655
Q ss_pred HHHHHHHhcccCCcEEEEEECCcccc-CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHH
Q psy8497 107 TDVVRSVGAHVKNLHVDYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185 (2355)
Q Consensus 107 anwLREFgk~APgLrVVvytGGkq~r-kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeI 185 (2355)
.+.+. +.+..+..-.... ........+... ....+..+++|||||++.+.. ..+..+
T Consensus 91 ~~~~~--------~~~~T~h~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~iiiDE~~~~~~----~~~~~l 148 (459)
T 3upu_A 91 SKLSG--------KEASTIHSILKINPVTYEENVLFEQK----------EVPDLAKCRVLICDEVSMYDR----KLFKIL 148 (459)
T ss_dssp HHHHS--------SCEEEHHHHHTEEEEECSSCEEEEEC----------SCCCCSSCSEEEESCGGGCCH----HHHHHH
T ss_pred Hhhhc--------cchhhHHHHhccCcccccccchhccc----------ccccccCCCEEEEECchhCCH----HHHHHH
Confidence 54431 1111100000000 000000011110 112345688999999997542 345556
Q ss_pred HHhCCCCceEEEEEe
Q psy8497 186 YSQLPPMKQMLVVSA 200 (2355)
Q Consensus 186 Ls~LppnrQILLLSA 200 (2355)
+..++...+++++.-
T Consensus 149 ~~~~~~~~~~~~vGD 163 (459)
T 3upu_A 149 LSTIPPWCTIIGIGD 163 (459)
T ss_dssp HHHSCTTCEEEEEEC
T ss_pred HHhccCCCEEEEECC
Confidence 666665666666654
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=6.7e-05 Score=93.14 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=81.4
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.|.+.|.+++..++....++|.++.|+|||.+. ..++..+.. .+.++++++||...+..+.+.+. ..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~~--------~~- 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES---LGLEVGLCAPTGKAARRLGEVTG--------RT- 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHT--------SC-
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh---cCCeEEEecCcHHHHHHhHhhhc--------cc-
Confidence 689999999999998888999999999999653 355555553 46789999999998766554321 00
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHH----HhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMI----KLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLL----drr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
..|...++... .........+++|||||++++.. ..+..++..++...++|++
T Consensus 256 -------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~----~~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 -------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGD----ALMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp -------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCH----HHHHHHHTTSCTTCEEEEE
T ss_pred -------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCCH----HHHHHHHHhCcCCCEEEEE
Confidence 11211111000 00111234678999999997642 4556667777777787776
Q ss_pred Ee
Q psy8497 199 SA 200 (2355)
Q Consensus 199 SA 200 (2355)
.-
T Consensus 313 GD 314 (574)
T 3e1s_A 313 GD 314 (574)
T ss_dssp EC
T ss_pred ec
Confidence 54
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00017 Score=92.78 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=55.9
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
+..|++.|.+|+..++...-++|.||.|+|||.+.... +..|... .+.++|+++|+...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~-i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATI-VYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHH-HHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH-HHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34689999999999988767899999999999765543 3344321 3578999999999999999988875
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.002 Score=79.15 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=56.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..|++-|.+++. .....++|.|+.|+|||.+.+--+...+........++|+|++|...+.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 479999999997 33567999999999999776655555544323344689999999999999999998874
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00018 Score=92.49 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
+..|.+.|.+|+..++...-++|.||.|+|||.+.. .++..|.. ..+.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHT--TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHH--cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 346899999999999887778999999999997654 44555552 24678999999999998888887764
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0038 Score=74.82 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=76.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC-cE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN-LH 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg-Lr 121 (2355)
.|.|||...+..+...+-++|..+-+.|||.+....++..+.. ..+..+++++|+...+..+.+.+..+....|. +.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~--~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS--SSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 7899999999887655668999999999998766555543332 34668999999999988888888777654443 11
Q ss_pred E-EEEECCccccCCCCCCcEEEE--CHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 122 V-DYFIGGTQVERPKRPVQIVVG--SPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 122 V-VvytGGkq~rkqirq~DILVT--TPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
. ........... .....|.+. ++..+ .-..+.++||||+|.+.+
T Consensus 241 ~~~~~~~~~~I~f-~nGs~i~~lsa~~~sl---------rG~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 241 PGIVEWNKGSIEL-DNGSSIGAYASSPDAV---------RGNSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CCEEEECSSEEEE-TTSCEEEEEECSHHHH---------HTSCCSEEEEESGGGSTT
T ss_pred hhhccCCccEEEe-CCCCEEEEEECCCCCc---------cCCCCCEEEechhhhcCC
Confidence 0 00111111110 111222222 34333 133456999999998775
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0076 Score=74.88 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=77.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC-cE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN-LH 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg-Lr 121 (2355)
.|.|+|...+..+...+.++|..+-|.|||.+....++..+.. ..+..+++++|+...+..+.+.++.+....|. +.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~--~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~ 240 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT--SSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh--CCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhc
Confidence 6899999999887556679999999999998766554444442 24568999999999999988888887766653 11
Q ss_pred EEEE-ECCccccCCCCCCcEE--EECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 122 VDYF-IGGTQVERPKRPVQIV--VGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 122 VVvy-tGGkq~rkqirq~DIL--VTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
.... ........ .....|. ...|..+. -..++++||||+|.+.+
T Consensus 241 ~~~~~~~~~~i~~-~nGs~i~~~s~~~~~lr---------G~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 241 PGIVEWNKGSIEL-DNGSSIGAYASSPDAVR---------GNSFAMIYIEDCAFIPN 287 (592)
T ss_dssp CCEEEECSSEEEE-TTSCEEEEEECCHHHHH---------HSCCSEEEEETGGGCTT
T ss_pred cccccCCccEEEe-cCCCEEEEEeCCCCCcc---------CCCcceEEEehhccCCc
Confidence 1001 11111111 1112222 22344431 12356899999998765
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.05 Score=56.52 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHH---------cCCcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 45 SPIQMAAFPYVL---------NGYDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 45 RPYQeEALn~LL---------SGRNVILAAPTGSGKTLVALIAILerL 83 (2355)
.+.|.+++..+. .+..++|.+|+|+|||..+. +++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~-~i~~~~ 62 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV-ATLKAI 62 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH-HHHHHH
Confidence 345666665554 35679999999999996544 444444
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.026 Score=69.13 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=62.8
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
.+|.|+.|+|||.... .++ . ...+|||+|+++++..+.+.+.+... .....+
T Consensus 164 ~~I~G~aGsGKTt~I~-~~~---~-----~~~~lVlTpT~~aa~~l~~kl~~~~~-------------------~~~~~~ 215 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL-SRV---N-----FEEDLILVPGRQAAEMIRRRANASGI-------------------IVATKD 215 (446)
T ss_dssp EEEEECTTSCHHHHHH-HHC---C-----TTTCEEEESCHHHHHHHHHHHTTTSC-------------------CCCCTT
T ss_pred EEEEcCCCCCHHHHHH-HHh---c-----cCCeEEEeCCHHHHHHHHHHhhhcCc-------------------cccccc
Confidence 6889999999995432 221 1 14579999999998776666532210 001123
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
-|.|.+.+ ++.........+++|||||+-.+ .. ..+..++..++. .++|++.-+
T Consensus 216 ~V~T~dsf--L~~~~~~~~~~~d~liiDE~sm~-~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 216 NVRTVDSF--LMNYGKGARCQFKRLFIDEGLML-HT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp TEEEHHHH--HHTTTSSCCCCCSEEEEETGGGS-CH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred eEEEeHHh--hcCCCCCCCCcCCEEEEeCcccC-CH---HHHHHHHHhCCC-CEEEEecCc
Confidence 47898876 23222222234789999999854 33 233334444443 667766654
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.032 Score=59.84 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=26.9
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
+.=.++.+|||+|||..++-.+..... .+.+++|+.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH----TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeecc
Confidence 344689999999999665544443333 356799998884
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.064 Score=60.00 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=50.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
.-+++.++||+|||...+-.+..+.. .+.+++|+.|...- . -...+.... | ....
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~----~g~kVli~~~~~d~----r-~~~~i~srl---------G-------~~~~ 67 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEY----ADVKYLVFKPKIDT----R-SIRNIQSRT---------G-------TSLP 67 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEEECCCG----G-GCSSCCCCC---------C-------CSSC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHh----cCCEEEEEEeccCc----h-HHHHHHHhc---------C-------CCcc
Confidence 34788999999999666544444433 36678888875421 0 000000000 1 1112
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
.+.+.+.+.+...+... +....+++|||||++.+.
T Consensus 68 ~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 68 SVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp CEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSC
T ss_pred ccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCc
Confidence 24456666665555432 223457899999999754
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.032 Score=70.85 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=75.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
..|++-|.+++.. ....++|.|..|+|||.+.+.-+...+.+.......+|+|+.|...+.++.+.+..+....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~---- 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA---- 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG----
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc----
Confidence 4799999999875 3567999999999999876655655554333345679999999999999999988874221
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccC--cCceEEEecccch
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNM--DSVRLFIMDEADK 172 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdL--SkIdLLIVDEAHR 172 (2355)
...+-|+|...|...+.+..... ..-.+.|+|+.+.
T Consensus 84 ---------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 84 ---------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp ---------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred ---------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 02367899888764433322111 1223578887663
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.063 Score=58.58 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=26.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.++.++||+|||...+-.+..+.. .+.+++++.|..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~----~g~kV~v~k~~~ 46 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI----AKQKIQVFKPEI 46 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEEC-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH----CCCEEEEEEecc
Confidence 688999999999665544444332 467899999874
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.035 Score=62.24 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=26.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
.++.++||+|||..++-.+..+.. .+.++||+.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~----~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQF----AKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH----CCCEEEEEEeccC
Confidence 568999999999766655554443 4778999999753
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.18 Score=51.72 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=26.1
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
....+|||||+|.+... ....+..++........+|++|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45679999999987543 234555566665555666655443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.071 Score=60.57 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=22.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
.++|.+|.|+|||... -.++..+... ....++++.
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~~~~--~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELYKDK--TTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHTTS--CCCEEEEEE
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHhhh--cCeeEEEEe
Confidence 6999999999999554 3444444321 034566664
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.036 Score=69.35 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
.|++-|.+++.. ....++|.|+.|+|||.+.+--+...+.........+|+|+.|...+.++.+.+....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 589999999975 3567999999999999876655555554323345679999999999999999998874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.16 Score=57.65 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=23.9
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..++|.+|+|+|||..+- ++...+.. .+.++++|..
T Consensus 38 ~~lll~G~~GtGKT~la~-~i~~~~~~---~~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ-AAGNEAKK---RGYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHH-HHHHHHHH---TTCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH---CCCEEEEEEH
Confidence 579999999999996544 44444442 1455666543
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.37 Score=56.64 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=20.0
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIK 85 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~e 85 (2355)
..+++|.+|+|+|||.+.- .++..|..
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 3569999999999996544 56666653
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.14 Score=59.13 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHHc----CC---cEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 44 ESPIQMAAFPYVLN----GY---DAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 44 LRPYQeEALn~LLS----GR---NVILAAPTGSGKTLVALIAILerL~ 84 (2355)
++|+|.+++..+.. ++ .+++.||.|+|||.++. .+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 56888888776652 32 38999999999996655 4444444
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.25 Score=55.82 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=18.1
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL 83 (2355)
...++|.+|+|+|||..+- .+...+
T Consensus 44 ~~~vll~G~~G~GKT~l~~-~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR-LVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH-HHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHH
Confidence 3569999999999996543 444444
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.064 Score=61.08 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=27.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
=.++.++||+|||...+-.+.++. ..+.+++|+-|..
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~----~~g~kvli~kp~~ 57 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQ----IAQYKCLVIKYAK 57 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH----TTTCCEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH----HCCCeEEEEeecC
Confidence 368899999999966555554443 3577899998875
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.097 Score=58.30 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=17.5
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL 83 (2355)
.+++|.+|+|+|||.++- ++...+
T Consensus 68 ~~vll~G~~GtGKT~la~-~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL-KMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHH-HHHHHH
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHH
Confidence 359999999999996654 333344
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.37 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=17.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL 83 (2355)
..++|.+|.|+|||..+. .+...+
T Consensus 46 ~~vll~G~~G~GKT~la~-~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK-YIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHHH-HHHHHH
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 459999999999996543 444444
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.70 E-value=1.8 Score=43.47 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=18.1
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
..++|.+|+|+|||..+. .+...+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~-~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE-GLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHHH-HHHHHHH
T ss_pred CceEEECCCCCCHHHHHH-HHHHHHH
Confidence 569999999999996544 4444443
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.34 Score=54.66 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+..++|.+|.|+|||..+- .++..+.........++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~-~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK-FVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH-HHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHHhcCCceEEEEE
Confidence 3569999999999995543 44444432111034455554
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.66 Score=51.33 Aligned_cols=18 Identities=11% Similarity=0.301 Sum_probs=15.0
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+|+|+|||.++-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 359999999999996654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.27 Score=51.67 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=22.8
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
..++|.+|+|+|||..+. ++...+.. .+.+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~~---~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELAK---RNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHHT---TTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH---cCCeEEEE
Confidence 679999999999996644 45555542 24445544
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.29 Score=49.42 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=18.5
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
..+++|.+|+|+|||..+. .+...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~-~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE-GLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH-HHHHHHH
Confidence 3569999999999996544 4444443
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.089 Score=59.43 Aligned_cols=37 Identities=11% Similarity=0.219 Sum_probs=25.3
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
.++.++||+|||...+-.+..+.. .+.+++|+.|...
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~----~g~kvli~kp~~D 67 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIY----AKQKVVVFKPAID 67 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH----TTCCEEEEEEC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----cCCceEEEEeccC
Confidence 688999999999655544433332 3577999999753
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.11 Score=57.74 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=25.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
=.++.+|||+|||.-.+-++-.+.. .+.+++|+.|.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~----~~~kvl~~kp~ 57 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQI----AQYKCLVIKYA 57 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH----TTCCEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH----cCCeEEEEccc
Confidence 3788999999999554544444433 35778999886
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.066 Score=55.65 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCchHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVAL 76 (2355)
.+..++|.+|+|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56779999999999995433
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.3 Score=55.14 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=25.2
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
...+|||||+|.+........+..++...+...++|+.+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 5679999999998622233455555555555556666443
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.57 Score=56.53 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=24.0
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..++|.||+|+|||..+- ++...+... ..+.++++|..
T Consensus 131 ~~lll~Gp~G~GKTtLa~-aia~~l~~~-~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQN-EPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHH-HHHHHHHHH-CCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHh-CCCCeEEEeeH
Confidence 469999999999996554 444444321 22445666543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.21 Score=55.08 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.6
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
...++|.+|+|+|||.++-
T Consensus 51 ~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CSEEEEESSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999996543
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.23 Score=54.47 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=15.5
Q ss_pred EEEEccCCchHHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAAL 80 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAIL 80 (2355)
.++.++.|+|||..++..++
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 68999999999977654433
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.82 E-value=0.62 Score=51.72 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=24.9
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
....+|||||+|.+... ....+..++...+....+|+++
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999988543 2344555566555555555544
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.47 Score=54.49 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=16.1
Q ss_pred cEEE--EccCCchHHHHHHHHHHHHH
Q psy8497 60 DAIV--QSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 60 NVIL--AAPTGSGKTLVALIAILerL 83 (2355)
.++| .+|.|+|||...- .++..+
T Consensus 52 ~~li~i~G~~G~GKT~L~~-~~~~~~ 76 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAK-FTVKRV 76 (412)
T ss_dssp EEEEECTTCCSSSHHHHHH-HHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHH-HHHHHH
Confidence 4777 8999999996543 444444
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.63 E-value=0.35 Score=54.51 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=26.0
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
....+|||||+|.+... ....+..++...+....+|+++.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 45679999999988643 23455566666655556666543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=1.3 Score=45.77 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=22.6
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
...+|||||+|.+... ....+..++...+....+|++|.
T Consensus 126 ~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEeC
Confidence 4569999999987432 23444444544444445555443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=91.57 E-value=0.39 Score=58.61 Aligned_cols=128 Identities=16% Similarity=0.237 Sum_probs=70.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++++|+|||.+.. .+...+.. .+.+++++. +.+. ...|+..+.... ++.+ +.....
T Consensus 100 I~lvG~~GsGKTTt~~-kLA~~l~~---~G~kVllv~~D~~r~~a~eqL~~~~~~~-----gv~~--~~~~~~------- 161 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAG-KLAYFYKK---RGYKVGLVAADVYRPAAYDQLLQLGNQI-----GVQV--YGEPNN------- 161 (433)
T ss_dssp EEECCCTTSCHHHHHH-HHHHHHHH---TTCCEEEEEECCSCHHHHHHHHHHHHTT-----TCCE--ECCTTC-------
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHH---cCCeEEEEecCccchhHHHHHHHHHHhc-----CCce--eecccc-------
Confidence 6778999999996554 33344442 356677665 3332 333333333222 2211 111100
Q ss_pred CcEEEECHHHHH-HHHHhhcccCcCceEEEecccchhc---ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 138 VQIVVGSPGRIK-QMIKLKYLNMDSVRLFIMDEADKLI---NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTPErLL-DLLdrr~LdLSkIdLLIVDEAHRLk---N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..|..+. ..+. .+....+++||||++-++. +..+...+..+...+.+..-++.+.|+........+..+
T Consensus 162 -----~dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 162 -----QNPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp -----SCHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred -----CCHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 1233222 2222 2234578899999998754 333556667777777777777888998776655555443
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.23 Score=50.56 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=16.8
Q ss_pred HHcCCcEEEEccCCchHHHHH
Q psy8497 55 VLNGYDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 55 LLSGRNVILAAPTGSGKTLVA 75 (2355)
+....+++|.+|+|+|||.++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=91.49 E-value=0.22 Score=52.48 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=18.6
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
...++|.+|+|+|||..+. .+...+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~-~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH-AACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4679999999999996544 4444433
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.24 Score=66.80 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=76.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC--CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP--VQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr--~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
.+++-|.++|..- +.+++|.|.-|||||.+.+--++..+.... ....++|+|++|...+.++.+.+.......-.-
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~~ 87 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQ 87 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhhc
Confidence 7899999998753 778999999999999887766666655321 245689999999999999998888743211000
Q ss_pred EEEEEECC-cccc-CCCCCCcEEEECHHHHHHHHHhhcccC--cCceEEEecccch
Q psy8497 121 HVDYFIGG-TQVE-RPKRPVQIVVGSPGRIKQMIKLKYLNM--DSVRLFIMDEADK 172 (2355)
Q Consensus 121 rVVvytGG-kq~r-kqirq~DILVTTPErLLDLLdrr~LdL--SkIdLLIVDEAHR 172 (2355)
... .... .......+-|+|...+...+-+..... ..-.+-|+||...
T Consensus 88 -----~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~~ 138 (1232)
T 3u4q_A 88 -----RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEG 138 (1232)
T ss_dssp -----STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHHH
T ss_pred -----CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHHH
Confidence 000 0000 000013468899988765444332111 1222447888663
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.33 Score=62.17 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
.++.-|.+++..+..- .-.+|.|+-|.|||.+ +-.++..+. ..++|.+|+..-+.. +.++...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~-lG~~~a~~~------~~~~vtAP~~~a~~~----l~~~~~~---- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSAL-AGQLISRIA------GRAIVTAPAKASTDV----LAQFAGE---- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHH-HHHHHHHSS------SCEEEECSSCCSCHH----HHHHHGG----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHH-HHHHHHHHH------hCcEEECCCHHHHHH----HHHHhhC----
Confidence 6788999999988863 3479999999999944 434444433 246999999876443 3333211
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
.|-+..|+.+.. .....++||||||=.+. ...+..++... ..++||.
T Consensus 240 ------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~----~~v~~~t 286 (671)
T 2zpa_A 240 ------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF----PRTLLTT 286 (671)
T ss_dssp ------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----SEEEEEE
T ss_pred ------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----CeEEEEe
Confidence 033446765421 23458899999998764 24445555432 2466666
Q ss_pred ccC
Q psy8497 201 TYS 203 (2355)
Q Consensus 201 TLS 203 (2355)
|..
T Consensus 287 Tv~ 289 (671)
T 2zpa_A 287 TVQ 289 (671)
T ss_dssp EBS
T ss_pred cCC
Confidence 654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.18 E-value=0.59 Score=53.08 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=28.8
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
....+|||||+|.| +......+..++...+....+|++|..+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 36779999999984 44445666777777666666666665443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=90.64 E-value=1.6 Score=45.87 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+.-++|.+|+|+|||..+.. ++..+.. .+..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~-l~~~~~~---~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLH-FIAKGLR---DGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHH-HHHHHHH---HTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHHHHH---CCCeEEEEE
Confidence 45588999999999955443 3323321 245677765
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=1.6 Score=48.56 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=73.4
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
..++|..+.|-|||.+++..++..+. .+.+|+|+.-.+. ...--.+.+..+ ++.+. ..+....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g----~G~rV~~vQF~Kg~~~~gE~~~l~~L-----~v~~~--~~g~gf~----- 92 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG----HGKNVGVVQFIKGTWPNGERNLLEPH-----GVEFQ--VMATGFT----- 92 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH----TTCCEEEEESSCCSSCCHHHHHHGGG-----TCEEE--ECCTTCC-----
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEEeeCCCCCccHHHHHHhC-----CcEEE--Ecccccc-----
Confidence 46999999999999999888887776 3778999843321 000001122222 12221 1111111
Q ss_pred CcEEEECHH------HHHHHHHh--hcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHH
Q psy8497 138 VQIVVGSPG------RIKQMIKL--KYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNL 207 (2355)
Q Consensus 138 ~DILVTTPE------rLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EIL 207 (2355)
..+++ .....+.. ..+.-..+++||+||+=.....++ ...+..++...+...-+|+++--++.++.
T Consensus 93 ----~~~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 93 ----WETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp ----CCGGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred ----cCCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 12211 11111111 233347799999999976554443 45667777777766667766666665554
Q ss_pred HHH
Q psy8497 208 ATL 210 (2355)
Q Consensus 208 ElL 210 (2355)
+..
T Consensus 169 e~A 171 (196)
T 1g5t_A 169 DLA 171 (196)
T ss_dssp HHC
T ss_pred HhC
Confidence 443
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.29 E-value=0.18 Score=51.36 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=24.0
Q ss_pred eEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 163 RLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 163 dLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
++|+|||+|.+... ....+..++...+...++|+.|..
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEECCc
Confidence 47999999988643 234455555555555666665554
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=89.79 E-value=0.44 Score=54.89 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=23.6
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH-hcCCCCCeEEEEc
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLI-KLPVQQPQTIILA 97 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~-ekr~qggRVLILV 97 (2355)
..+++|.+|+|+|||..+. ++...+. . .+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~~~---~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELSEK---KGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHHHH---SCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHHh---cCCcEEEEE
Confidence 4679999999999997655 3444443 2 234555543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.65 E-value=1.6 Score=47.30 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.0
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+|+|+|||.++-
T Consensus 40 ~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999996544
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=1.6 Score=51.15 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||.++-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 469999999999996654
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=89.33 E-value=0.85 Score=52.18 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||.++-
T Consensus 52 ~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CEEEEECSSSSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 469999999999996654
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.05 E-value=1.2 Score=51.51 Aligned_cols=39 Identities=5% Similarity=0.204 Sum_probs=24.6
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.+|||||+|.|.... ...+.++++.-++...+|+++
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 467899999999986432 244555555544445555544
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=88.86 E-value=1.4 Score=46.96 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
+.-++|.+|+|+|||..++..+...+. .+.+++|+..... ..++.+++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~----~~~~v~~~~~e~~-~~~~~~~~~~~ 73 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK----MGEPGIYVALEEH-PVQVRQNMAQF 73 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH----TTCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEEccCC-HHHHHHHHHHc
Confidence 455899999999999665544443333 3567888774322 34445555443
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.72 E-value=1.5 Score=51.53 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+++||.+|+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999996654
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=0.97 Score=49.74 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCchHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVAL 76 (2355)
...+++|.+|+|+|||.++-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 35679999999999996543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=87.12 E-value=3.2 Score=51.03 Aligned_cols=128 Identities=15% Similarity=0.253 Sum_probs=68.9
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHH-HHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREI-AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRAL-AqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++++|+|||.+.. .+..++.. .+.++++|. |.+.- ..|+..|... . ++.+ +.....
T Consensus 103 IlivG~~G~GKTTt~~-kLA~~l~~---~G~kVllv~~D~~R~aa~eqL~~~~~~----~-gvpv--~~~~~~------- 164 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVA-KLARYFQK---RGYKVGVVCSDTWRPGAYHQLRQLLDR----Y-HIEV--FGNPQE------- 164 (443)
T ss_dssp EEEECCTTSSHHHHHH-HHHHHHHT---TTCCEEEEECCCSSTHHHHHHHHHHGG----G-TCEE--ECCTTC-------
T ss_pred EEEECcCCCCHHHHHH-HHHHHHHH---CCCeEEEEeCCCcchhHHHHHHHHHHh----c-CCcE--EecCCC-------
Confidence 7889999999996654 44445542 456677666 44333 2333333222 2 2222 111110
Q ss_pred CcEEEECHHHH-HHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 138 VQIVVGSPGRI-KQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTPErL-LDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..|..+ ...+.. +....+++||||.+=++... .....+..+.....+..-++.+.|+........+..+
T Consensus 165 -----~dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 165 -----KDAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp -----CCHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 123322 222221 11234789999998665422 2344555666666666677888898876666555444
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.00 E-value=0.98 Score=50.03 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=24.0
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+|||||+|.+.... ...+..++...+....+|++|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999876432 233455555555555666555
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=86.80 E-value=7.1 Score=44.59 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=17.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL 83 (2355)
+.++|.+|+|+|||.++- ++...+
T Consensus 71 ~~vLl~GppGtGKT~la~-~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM-GMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHH-HHHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHHHh
Confidence 469999999999996554 444443
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=86.73 E-value=1.7 Score=50.53 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=65.2
Q ss_pred CCCeEEEEEcccccHHHHHHHHHh---cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc----cccCCCCccE
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLAN---ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA----RGIDAANVDL 336 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrE---rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG----EGLDLPaVDT 336 (2355)
...++||.++++..+..+++.|.. .++.+..++|+++..++...++.+..+..+|+|+|...- .-+++..+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 446999999999999999999988 578999999999999999999999999999999995321 1255667888
Q ss_pred EEEecC
Q psy8497 337 VINLEI 342 (2355)
Q Consensus 337 VIIyDS 342 (2355)
||+-..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 876554
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=86.57 E-value=1.5 Score=57.05 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=67.7
Q ss_pred CeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-ccccCCCCccEEEEe
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA-ARGIDAANVDLVINL 340 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL-GEGLDLPaVDTVIIy 340 (2355)
.++||.++++..+..+++.|... ++.+..++|+++..+|..+++.+.+|..+|||+|... ...+.+..+.+||+-
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 58999999999888777766653 7899999999999999999999999999999999653 456788899999987
Q ss_pred cCCC
Q psy8497 341 EIPH 344 (2355)
Q Consensus 341 DSP~ 344 (2355)
..+.
T Consensus 498 EaHr 501 (780)
T 1gm5_A 498 EQHR 501 (780)
T ss_dssp SCCC
T ss_pred ccch
Confidence 7775
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.49 E-value=23 Score=39.54 Aligned_cols=37 Identities=16% Similarity=0.468 Sum_probs=22.6
Q ss_pred ceEEEecccchhcc---cChHHHHHHHHHhCCCCceEEEEE
Q psy8497 162 VRLFIMDEADKLIN---TGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 162 IdLLIVDEAHRLkN---~GF~SrLeeILs~LppnrQILLLS 199 (2355)
--+|||||+|.+.. ..+...+..+....+ ...+|+++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 34899999999864 345556665555442 34444433
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=86.42 E-value=2 Score=48.71 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=15.2
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.+++|.+|+|+|||.++-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 469999999999996544
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=84.99 E-value=4.5 Score=45.95 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=23.2
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
....+|||||+|.+... ....+..++...+....+|++|
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 45679999999987543 2344455555544444444443
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=84.77 E-value=2.3 Score=47.30 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=15.7
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.++|.+|+|+|||.++-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999996543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=84.66 E-value=10 Score=45.63 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=29.1
Q ss_pred HHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 51 AFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 51 ALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.|..++.| .-++|+|++|+|||..++-.+..... ..+.+++|+..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~---~~g~~vl~~sl 237 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL---KEGVGVGIYSL 237 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCCCEEEEES
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEEC
Confidence 45666643 33899999999999655544444333 13567888874
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=84.28 E-value=1.7 Score=53.67 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=27.6
Q ss_pred ceEEEecccchhcccC----------hHHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 162 VRLFIMDEADKLINTG----------FVEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~G----------F~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
..+|+|||+|.|.... ....+..++..+.....++++.||-..
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 4589999999886421 234445555555556667777777553
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.07 E-value=0.76 Score=55.88 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.5
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
++||.+|+|+|||.++-
T Consensus 52 ~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAE 68 (447)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 59999999999996544
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=84.05 E-value=2.5 Score=48.03 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=15.8
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.++|.+|+|+|||..+-
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CceEEEECCCCcCHHHHHH
Confidence 4569999999999996644
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=83.96 E-value=4.1 Score=49.94 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=25.9
Q ss_pred cCceEEEecccchhcccC--hHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 160 DSVRLFIMDEADKLINTG--FVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~G--F~SrLeeILs~LppnrQILLLSATL 202 (2355)
....+|||||+|.|.... ....+..++... ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 345689999999986432 234455555442 45677777764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.79 E-value=5.8 Score=45.84 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.1
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||..+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 569999999999996544
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=83.03 E-value=2.9 Score=47.99 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=25.8
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
....++||||+|.|... ....+..+++..+....+|+++
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999987643 2345566666666556665544
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.54 E-value=1.4 Score=51.36 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.++|.+|+|+|||.++-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999996654
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=82.14 E-value=2.6 Score=50.87 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.2
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.+||.+|+|+|||.++-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999996654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=82.07 E-value=2.8 Score=44.81 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEcc
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAP 98 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVP 98 (2355)
.|+.++. +.-++|.+|.|+|||..+...+...+... ......+|++..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 4555553 34589999999999965544333222210 002456777764
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=80.77 E-value=7.1 Score=45.09 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=56.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
.-++|++++|+|||.+....+ ..+.. ..+.+++++. +.+ ....|+..+...+ ++.+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA-~~l~~--~~G~~V~lv~~D~~r~~a~eqL~~~~~~~-----gl~~~------------ 165 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA-AISML--EKHKKIAFITTDTYRIAAVEQLKTYAELL-----QAPLE------------ 165 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH-HHHHH--TTCCCEEEEECCCSSTTHHHHHHHHHTTT-----TCCCC------------
T ss_pred cEEEEECCCCCCHHHHHHHHH-HHHHH--hcCCEEEEEecCcccchHHHHHHHHHHhc-----CCCeE------------
Confidence 347889999999996544333 23331 1344666654 222 2223333332211 11110
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC---CCceEEEEEeccChh
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP---PMKQMLVVSATYSHD 205 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp---pnrQILLLSATLS~E 205 (2355)
...++..+...+.. +..+++||||-+-++... ...+..+...+. +..-++.+.+|....
T Consensus 166 -----~~~~~~~l~~al~~----~~~~dlvIiDT~G~~~~~--~~~~~el~~~l~~~~~~~~~lVl~at~~~~ 227 (296)
T 2px0_A 166 -----VCYTKEEFQQAKEL----FSEYDHVFVDTAGRNFKD--PQYIDELKETIPFESSIQSFLVLSATAKYE 227 (296)
T ss_dssp -----BCSSHHHHHHHHHH----GGGSSEEEEECCCCCTTS--HHHHHHHHHHSCCCTTEEEEEEEETTBCHH
T ss_pred -----ecCCHHHHHHHHHH----hcCCCEEEEeCCCCChhh--HHHHHHHHHHHhhcCCCeEEEEEECCCCHH
Confidence 00134445444431 266789999976554321 233334444443 223366676776533
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.42 E-value=8.4 Score=47.04 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.0
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.+||.+|.|+|||+.+-
T Consensus 182 prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCEEEESCSSSSHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHH
Confidence 3679999999999996654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2355 | ||||
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 1e-33 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 5e-32 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 6e-31 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 1e-29 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 4e-28 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 1e-26 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 4e-25 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 9e-25 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-23 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 3e-22 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 4e-19 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 4e-19 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 7e-19 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 8e-19 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 4e-17 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 2e-15 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 2e-13 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-12 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 2e-12 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 3e-12 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 3e-11 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 5e-10 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 4e-09 | |
| d1s2ma2 | 171 | c.37.1.19 (A:252-422) Putative ATP-dependent RNA h | 8e-09 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 1e-08 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 3e-08 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-06 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 8e-06 |
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 127 bits (320), Expect = 1e-33
Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 6/205 (2%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F ++ + I ++ GF K + IQM P LN IV ++ TG A
Sbjct: 6 FN-ELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVA-QARTGSGKTASFAIPL 63
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE---RPKRPV 138
+ + IIL PTRE+A+Q+ D + S+ + KNL + GG + + +
Sbjct: 64 IELVNENNGIEAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALKNA 122
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198
IVVG+PGRI I LN+ +V+ FI+DEAD+++N GF++D+ I + K++L+
Sbjct: 123 NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLF 182
Query: 199 SATYSHDNLATLQKYMVDPLLIRPE 223
SAT + L +KYM D I+ +
Sbjct: 183 SATMPREILNLAKKYMGDYSFIKAK 207
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 123 bits (309), Expect = 5e-32
Identities = 69/211 (32%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + ++ D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 5 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 64
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133
F ++ L + I+L ++ Q ++LAPTRE+A QI VV ++G ++ G
Sbjct: 65 TFAISILQQ-IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 123
Query: 134 PK----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
+ I+VG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L
Sbjct: 124 VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL 183
Query: 190 PPMKQMLVVSATYSHDNLATLQKYMVDPLLI 220
Q++++SAT D L +K+M DP+ I
Sbjct: 184 NSNTQVVLLSATMPSDVLEVTKKFMRDPIRI 214
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 120 bits (301), Expect = 6e-31
Identities = 71/209 (33%), Positives = 123/209 (58%), Gaps = 5/209 (2%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
+N D + D+ +++ + +G+ GF + S IQ A ++ G+D + Q++SGTGK+
Sbjct: 3 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTG 62
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN--LHVDYFIGGTQV 131
F +AAL ++ + PQ ++LAPTRE+A+QI VV ++ H+ +
Sbjct: 63 TFSIAALQRIDTSV-KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 121
Query: 132 ERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191
R QIVVG+PGR+ I+ + D +++FI+DEAD+++++GF E I I++ LPP
Sbjct: 122 AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 181
Query: 192 MKQMLVVSATYSHDNLATLQKYMVDPLLI 220
Q++++SAT +D L K+M +P+ I
Sbjct: 182 TTQVVLLSATMPNDVLEVTTKFMRNPVRI 210
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 116 bits (290), Expect = 1e-29
Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 8/205 (3%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L
Sbjct: 3 FR-DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KR 136
+L + Q +++ TRE+A QI+ ++ N+ V F GG +++ K
Sbjct: 62 QLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 120
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI-NTGFVEDITWIYSQLPPMKQM 195
IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+
Sbjct: 121 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQV 180
Query: 196 LVVSATYSHDNLATLQKYMVDPLLI 220
++ SAT S + +K+M DP+ I
Sbjct: 181 MMFSATLSKEIRPVCRKFMQDPMEI 205
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (280), Expect = 4e-28
Identities = 69/203 (33%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F+ + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F ++ L
Sbjct: 19 FD-TMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 77
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK---NLHVDYFIGGTQVERPKRPV 138
L V++ Q +ILAPTRE+AVQI + ++G ++ + + G + +
Sbjct: 78 CLDI-QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 136
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198
+V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP Q++++
Sbjct: 137 HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 196
Query: 199 SATYSHDNLATLQKYMVDPLLIR 221
SAT H+ L K+M DP+ I
Sbjct: 197 SATLPHEILEMTNKFMTDPIRIL 219
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 110 bits (276), Expect = 1e-26
Identities = 48/337 (14%), Positives = 88/337 (26%), Gaps = 61/337 (18%)
Query: 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116
I+ G GK+ ++ A + + IK + +T+ILAPTR +A ++ + +R +
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIK---RGLRTLILAPTRVVAAEMEEALRGLPIR 64
Query: 117 VKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176
+ + G + + + + L + + + L IMDEA
Sbjct: 65 YQTPAIRAEHTGRE--------IVDLMCHATFTMRL-LSPIRVPNYNLIIMDEAHFTDPA 115
Query: 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
+ ++AT Q
Sbjct: 116 SIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAP--------------------- 154
Query: 237 ALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLS 296
+ + + V F I L LS
Sbjct: 155 -----IMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLS 209
Query: 297 GAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA---------------ANVDLVINLE 341
+ + +VTTD++ G + D +
Sbjct: 210 RKTFDSEYIK----TRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVI 265
Query: 342 I----PHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
+ P ++ R GR GR I E L
Sbjct: 266 LAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEPL 302
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (256), Expect = 4e-25
Identities = 63/203 (31%), Positives = 111/203 (54%), Gaps = 6/203 (2%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GTGKS +++ L
Sbjct: 5 FE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-- 139
+ + L Q +++ PTRE+A+Q++ + V H+ V GGT + +
Sbjct: 64 R-LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
+V+ +PGRI +IK +D V++ ++DEADKL++ FV+ + I LP +Q+L+
Sbjct: 123 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 182
Query: 198 VSATYSHDNLATLQKYMVDPLLI 220
SAT+ + ++ P I
Sbjct: 183 YSATFPLSVQKFMNSHLEKPYEI 205
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 103 bits (256), Expect = 9e-25
Identities = 50/215 (23%), Positives = 105/215 (48%), Gaps = 18/215 (8%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F+ ++ ++ IR + + + +PIQ A P +L D + +++G+GK+ F++ +N
Sbjct: 23 FD-ELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 81
Query: 82 KLIKLPVQQ--------PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT---- 129
L+ + Q P+ +ILAPTRE+A+QI + + L GG
Sbjct: 82 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADTHS 140
Query: 130 QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
Q+ + ++V +PGR+ I+ ++++ + ++DEAD++++ GF I I +
Sbjct: 141 QIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES 200
Query: 190 ----PPMKQMLVVSATYSHDNLATLQKYMVDPLLI 220
+Q L+ SAT+ + ++ + + +
Sbjct: 201 NMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 235
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 99.6 bits (247), Expect = 1e-23
Identities = 32/215 (14%), Positives = 71/215 (33%), Gaps = 30/215 (13%)
Query: 20 VLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAA 79
LF D L+++ + IQ +L + +G GK+ + +
Sbjct: 22 CLFPEDFLLKE--FVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMS 79
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH----VKNLHVDYFIGGTQVER-- 133
L + + + ++ PT + +Q + +R +NL Y + E+
Sbjct: 80 LFLAL----KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKEN 135
Query: 134 ---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN-----------TGFV 179
R +IV+ + + + + + +D+ D ++ GF
Sbjct: 136 FMQNLRNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKASKNVDKLLHLLGFH 191
Query: 180 EDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214
D+ ++V +AT A L + +
Sbjct: 192 YDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL 226
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 95.1 bits (235), Expect = 3e-22
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 7/207 (3%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
FE D +++ + G+ E GF K SPIQ A P + G D + ++K+GTGK+ FV+
Sbjct: 3 FE-DFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP-TL 60
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-- 139
+ +K + + Q +I+ PTRE+ T V + GGT + +
Sbjct: 61 EKVKPKLNKIQALIMVPTREL-ALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 119
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
I+VG+PGR+ + K ++ LFIMDEADK+++ F I I S LPP Q L+
Sbjct: 120 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLL 179
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPED 224
SAT+ + K++ P I +
Sbjct: 180 FSATFPLTVKEFMVKHLHKPYEINLME 206
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 85.8 bits (211), Expect = 4e-19
Identities = 29/207 (14%), Positives = 83/207 (40%), Gaps = 13/207 (6%)
Query: 17 NIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
++ L E+ I L+E G + P Q A V +G + ++ + GK+++
Sbjct: 2 KVEELAES---ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAE 58
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
+A + + I + +++ + P R +A + + + + + +
Sbjct: 59 MAMVREAI----KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGI-STGDYESRDEHLG 113
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS---QLPPMK 193
I+V + + +I+ + + +V ++DE L + + + + ++
Sbjct: 114 DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKAL 173
Query: 194 QMLVVSATYSHDNLATLQKYMVDPLLI 220
+++ +SAT N+ + +++ +
Sbjct: 174 RVIGLSATAP--NVTEIAEWLDADYYV 198
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 88.1 bits (218), Expect = 4e-19
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 14/121 (11%)
Query: 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS----------LDSFKRGK 315
+ +IF + + + + + L A D S L + G
Sbjct: 37 GRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGD 96
Query: 316 VRILVTTDLAARG---IDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
++ + + +P DA + R GR GR G G+ + E
Sbjct: 97 FDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 155
Query: 373 S 373
Sbjct: 156 R 156
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 85.1 bits (209), Expect = 7e-19
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 7/205 (3%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F + I + ++ F K + IQ P L G + QS++GTGK+ +++ +
Sbjct: 3 FT-RFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 61
Query: 82 KLIKLPVQQP---QTIILAPTREIAVQITDVVRSVGAHVKN---LHVDYFIGGTQVERPK 135
K+ + +I + + + + +E+
Sbjct: 62 KIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN 121
Query: 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
IV+G+PGRI I+ + L++ + + ++DEAD +++ GF+ D+ I +++P QM
Sbjct: 122 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQM 181
Query: 196 LVVSATYSHDNLATLQKYMVDPLLI 220
LV SAT L+KYM +P +
Sbjct: 182 LVFSATIPEKLKPFLKKYMENPTFV 206
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 86.9 bits (214), Expect = 8e-19
Identities = 50/287 (17%), Positives = 105/287 (36%), Gaps = 39/287 (13%)
Query: 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-----IVVGSPGRIKQMIKL 154
+E+ + +++R +K L + + + PK+ V I + L
Sbjct: 16 KEVRKLLREMLRD---ALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGL 72
Query: 155 KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214
+ +++L A +L+ T + + +L + A+ ++
Sbjct: 73 LLYHAMALKL---HHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS---------KEIF 120
Query: 215 VDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNY 274
D + + + +P + + E + + L + ++ ++F+NY
Sbjct: 121 SDKRMKKAISLLVQAKEIGL--------DHPKMDKLKEI--IREQLQRKQNSKIIVFTNY 170
Query: 275 QLRPEVICENLANANFGAEYLSGAQDQKARL--------ASLDSFKRGKVRILVTTDLAA 326
+ + I L A+ G ++ LD F RG+ +LV T +
Sbjct: 171 RETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGE 230
Query: 327 RGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373
G+D VDLV+ E A + R GR GR+ G VI +++ +
Sbjct: 231 EGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGT 276
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 80.1 bits (196), Expect = 4e-17
Identities = 40/201 (19%), Positives = 77/201 (38%), Gaps = 17/201 (8%)
Query: 28 IEKPIRQGLQEN-GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL 86
+E +Q LQE G+ + P Q VL+G D +V +G GKS+ + + AL
Sbjct: 9 LESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN--- 65
Query: 87 PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIG---GTQVERPKRPVQIVVG 143
T++++P + D +++ G L+ ++++
Sbjct: 66 ----GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYI 121
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW----IYSQLPPMKQMLVVS 199
+P R+ L++L + L +DEA + G + Q P + ++
Sbjct: 122 APERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALT 181
Query: 200 ATYSHDNLATLQK--YMVDPL 218
AT + + + DPL
Sbjct: 182 ATADDTTRQDIVRLLGLNDPL 202
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.2 bits (181), Expect = 2e-15
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 251 DEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
+EE K L L Q VIF N + + E + L N F + Q+ R
Sbjct: 10 EEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTI 69
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
+ F+ G RIL++TDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I
Sbjct: 70 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN 129
Query: 368 IVSAESLVKFHSLMGEIN 385
V+ E + L +
Sbjct: 130 FVTNEDVGAMRELEKFYS 147
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.2 bits (171), Expect = 2e-13
Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 18/143 (12%)
Query: 249 YVDEEK--KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
V++E L +L + +I++ E I E+L N +
Sbjct: 8 AVNDESISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKG 60
Query: 307 SLDSFKRGKVRILVTT----DLAARGIDAA-NVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ F G++ L+ T RG+D + + + P + +
Sbjct: 61 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSP 116
Query: 362 RGLVITIVSAESLVKFHSLMGEI 384
+ + + ++ + L+ +
Sbjct: 117 QMVKLLAYLYRNVDEIERLLPAV 139
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 66.7 bits (161), Expect = 2e-12
Identities = 29/194 (14%), Positives = 77/194 (39%), Gaps = 9/194 (4%)
Query: 36 LQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTII 95
+ ++ Q + + ++ +G GK+++ ++ A +L K + ++
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLM 57
Query: 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--PKRPVQIVVGSPGRIKQMIK 153
LAPT+ + +Q + R + V + ER +++V +P I+ +
Sbjct: 58 LAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLL 117
Query: 154 LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213
++++ V L + DEA + + I Y + ++ ++A+ ++
Sbjct: 118 AGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVI 177
Query: 214 ---MVDPLLIRPED 224
++ + R E+
Sbjct: 178 NNLGIEHIEYRSEN 191
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (158), Expect = 2e-12
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 231 GVKQLVALIPECKNPSLRYVDEEK--KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA 288
G+KQ + +E K L L Q VIF N + + + + E + A
Sbjct: 7 GIKQFFVAVER---------EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 57
Query: 289 NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAAT 348
NF + G QK R + + F+ G R+L++TD+ ARG+D V L+IN ++P++
Sbjct: 58 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 117
Query: 349 YLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385
Y+HR+GR+GRYG +G+ I V + + + +
Sbjct: 118 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 154
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 64.2 bits (155), Expect = 3e-12
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 249 YVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
V+E ++ L +LL F ++F + + + L + F A + G Q R
Sbjct: 10 EVNENERFEALCRLLKNKEF-YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQRE 68
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ FK+ K+RIL+ TD+ +RGID +++ VIN +P + +Y+HR+GR GR G +G
Sbjct: 69 KVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA 128
Query: 366 ITIVSAESLVKFHSLMGEINL 386
I+I++ K + + L
Sbjct: 129 ISIINRREYKKLRYIERAMKL 149
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 62.6 bits (151), Expect = 3e-11
Identities = 23/123 (18%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR 313
+KL ++L + ++ +IF+ + I + F ++ ++ R L+ F+
Sbjct: 82 RKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTSREEREEILEGFRT 136
Query: 314 GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG---TRGLVITIVS 370
G+ R +V++ + GID + ++ + + A Y+ R+GR R ++ ++S
Sbjct: 137 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 196
Query: 371 AES 373
+
Sbjct: 197 RGT 199
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 59.3 bits (142), Expect = 5e-10
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 245 PSLRY--VDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQ 299
P++RY +++ K L++ + + +I+ N + + E L + A
Sbjct: 5 PNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGL 64
Query: 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY 359
+ R + F+R ++I+V T GI+ NV V++ +IP + +Y GRAGR
Sbjct: 65 ENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 124
Query: 360 GTRGLVITIVS 370
G +
Sbjct: 125 GLPAEAMLFYD 135
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.1 bits (131), Expect = 8e-09
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 249 YVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
+V+E +K L L S+ NQ +IF N R E++ + + + + Y Q+ R
Sbjct: 13 FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN 72
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
F++GKVR LV +DL RGID V++VIN + P A TYLHR+GR+GR+G GL
Sbjct: 73 KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 132
Query: 366 ITIVSAESLVKFHSLMGEINLDHA 389
I +++ + + E+ + A
Sbjct: 133 INLINWNDRFNLYKIEQELGTEIA 156
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 53.6 bits (128), Expect = 1e-08
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 11/116 (9%)
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
L + +IF + + + + + L A D ++
Sbjct: 30 LEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIPTNGDVVV 82
Query: 320 VTTDLAARGIDA---ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
V TD G + +D + P DA + R GR GR G G+ + E
Sbjct: 83 VATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 137
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 53.6 bits (128), Expect = 3e-08
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325
+ ++ + + E + + L A YL R+ + + GK +LV +L
Sbjct: 32 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 91
Query: 326 ARGIDAANVDLVINLEIPHDAATYLHR--MGRAGRYGTRG 363
G+D V LV L+ + R + GR
Sbjct: 92 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 131
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 2e-06
Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF 290
G++Q + + ++ +KL LL FNQ VIF R + + L NF
Sbjct: 1 GLQQYYVKLKD--------NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF 52
Query: 291 GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYL 350
A + Q+ RL+ FK + RILV T+L RG+D V++ N ++P D+ TYL
Sbjct: 53 PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 112
Query: 351 HRMGRAGRYGTRGLVITIVSAESLVKF 377
HR+ RAGR+GT+GL IT VS E+ K
Sbjct: 113 HRVARAGRFGTKGLAITFVSDENDAKI 139
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.8 bits (110), Expect = 8e-06
Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 20/183 (10%)
Query: 210 LQKYMVDPLLIRPEDATRPLLGVKQLVALIPEC---KNPSLRYVDEEK-------KLVQL 259
L + ++ + D + L+ EC L + + KL +
Sbjct: 4 LVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAI 63
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRGKVRI 318
++ N+ + + + + LA GA + R D+F+RG +++
Sbjct: 64 TAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKV 123
Query: 319 LVTTDLAARGIDAANVDLVI-------NLEIPHDAATYLHRMGRAGRYG--TRGLVITIV 369
+V T A G++ +++ + Y GRAGR G RG I IV
Sbjct: 124 VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 183
Query: 370 SAE 372
Sbjct: 184 GKR 186
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2355 | |||
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.96 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.96 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.96 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.96 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.96 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.96 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.95 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.95 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.95 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.94 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.89 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.88 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.88 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.88 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.87 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.86 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.85 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.84 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.84 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.83 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.83 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.79 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.76 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.73 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.71 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.68 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.64 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.61 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.6 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.6 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.6 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.58 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.56 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.55 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.54 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.5 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.47 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.41 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.37 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.37 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.34 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.77 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.47 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.09 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.96 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.83 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 97.61 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.14 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.6 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.59 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 95.49 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.38 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.05 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.83 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.46 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 93.99 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.77 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 93.29 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.99 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 92.93 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 92.88 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.72 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.64 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 92.46 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.42 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.12 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 91.59 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.46 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.02 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.8 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.58 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.05 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 86.63 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 85.61 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 85.05 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.04 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.61 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 83.12 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 81.87 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.05 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 80.06 |
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.6e-29 Score=266.27 Aligned_cols=199 Identities=32% Similarity=0.482 Sum_probs=181.0
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
..+|+++++++ |++.|.+.||..|+|+|.++++.+++|+|+|+++|||+|||++|+++++..+.. .....++|||+|+
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~-~~~~~~~lil~pt 80 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-KKDNIQAMVIVPT 80 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-TSCSCCEEEECSC
T ss_pred CCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccc-cccCcceEEEeec
Confidence 46899999999 999999999999999999999999999999999999999999999999988763 3567789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+.|+.+.+..+......+.+....|+..... ....++|||+||++|.+++....+.+..+.+|||||||+|.+
T Consensus 81 ~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~ 160 (206)
T d1veca_ 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred chhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEeccccccc
Confidence 9999999999999987777788888877764432 234589999999999999999888999999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeee
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLI 220 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvII 220 (2355)
.+|...+..++..++...|++++|||++.++..++..+|.+|+.+
T Consensus 161 ~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 161 QDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 999999999999999999999999999999999999999998765
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-29 Score=275.82 Aligned_cols=206 Identities=37% Similarity=0.597 Sum_probs=185.8
Q ss_pred cCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEE
Q psy8497 16 SNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTI 94 (2355)
Q Consensus 16 SsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVL 94 (2355)
...+...+|+++++++ |++.|...||..|+|+|.++|+.++.|+++|+.+|||+|||++|+++++..+.. .....++|
T Consensus 11 ~~~~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~-~~~~~~~l 89 (222)
T d2j0sa1 11 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-QVRETQAL 89 (222)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-TSCSCCEE
T ss_pred CCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccc-cccCceeE
Confidence 3467778999999999 999999999999999999999999999999999999999999999999988763 34567899
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEeccc
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEA 170 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEA 170 (2355)
|++|+++|+.|+.+.++.+.... ++++..++|+...... ...++|||+||++|.+++....+.+..+.+||||||
T Consensus 90 il~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEa 168 (222)
T d2j0sa1 90 ILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 168 (222)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EecchHHHHHHHHHHHHHHhCcc-ceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecch
Confidence 99999999999999999998765 8899999988754422 234899999999999999998889999999999999
Q ss_pred chhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 171 DKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 171 HRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
|+|++.+|...+..++..++...|++++|||++.++.+++..++.+|+.+.+.
T Consensus 169 D~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~ 221 (222)
T d2j0sa1 169 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221 (222)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred hHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEEe
Confidence 99999999999999999999999999999999998888889999999877653
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-28 Score=266.13 Aligned_cols=204 Identities=34% Similarity=0.564 Sum_probs=181.8
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
.+.+.+|+++++++ +++.|...||..|+++|.++++.++.|+++|+++|||+|||++|+++++..+.. .....++||+
T Consensus 8 ~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~-~~~~~~alil 86 (218)
T d2g9na1 8 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-DLKATQALVL 86 (218)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT-TCCSCCEEEE
T ss_pred CCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecc-cccCccEEEE
Confidence 35678999999999 999999999999999999999999999999999999999999999999988763 4567889999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
||+++|+.|+.+.+..+.... .+.+..+.++...... ...++|||+||++|.+++....+.+..+.+|||||||
T Consensus 87 ~Pt~eL~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD 165 (218)
T d2g9na1 87 APTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 165 (218)
T ss_dssp CSSHHHHHHHHHHHHHHHTTT-TCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH
T ss_pred cccchhhhhHHHHHhhhcccc-ceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecc
Confidence 999999999999999998877 6666666665543322 2348999999999999999988899999999999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
+|.+.+|...+..++..++...|++++|||++.++..+...++.+|+.+.+.
T Consensus 166 ~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v~ 217 (218)
T d2g9na1 166 EMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217 (218)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEECC
T ss_pred hhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999877653
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.96 E-value=2.6e-29 Score=272.31 Aligned_cols=272 Identities=18% Similarity=0.143 Sum_probs=183.9
Q ss_pred HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC
Q psy8497 55 VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP 134 (2355)
Q Consensus 55 LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq 134 (2355)
+.+++++||.+|||+|||++++++++..... .+.++|||+|+++|+.|+.+.++++.......... + ..
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~---~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~---~-----~~ 74 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK---RGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIR---A-----EH 74 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---HTCCEEEEESSHHHHHHHHHHTTTSCCBCCC---------------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh---cCCEEEEEccHHHHHHHHHHHHhcCCcceeeeEEe---e-----cc
Confidence 4567889999999999999888787765553 36789999999999999998887664333221111 1 11
Q ss_pred CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHh--CCCCceEEEEEeccChhHHHHHHH
Q psy8497 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ--LPPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 135 irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~--LppnrQILLLSATLS~EILElLkK 212 (2355)
.....|+++|++.|...+. ....+..+++|||||+|++..+++. +..++.. .....+++++|||++....
T Consensus 75 ~~~~~i~~~t~~~l~~~~~-~~~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~~~~~~~~~v~~SAT~~~~~~----- 146 (305)
T d2bmfa2 75 TGREIVDLMCHATFTMRLL-SPIRVPNYNLIIMDEAHFTDPASIA--ARGYISTRVEMGEAAGIFMTATPPGSRD----- 146 (305)
T ss_dssp -CCCSEEEEEHHHHHHHHT-SSSCCCCCSEEEEESTTCCSHHHHH--HHHHHHHHHHHTSCEEEEECSSCTTCCC-----
T ss_pred cCccccccCCcHHHHHHHh-cCccccceeEEEeeeeeecchhhHH--HHHHHHHhhccccceEEEeecCCCccee-----
Confidence 1235699999998866554 3344678999999999998765421 1222221 2356799999999863211
Q ss_pred hccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCcc
Q psy8497 213 YMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGA 292 (2355)
Q Consensus 213 fLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKV 292 (2355)
.. . .....+......++...... .+.. +.. ..+++||||++++.++.++..|.+.++.+
T Consensus 147 ----~~----~---~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~ 205 (305)
T d2bmfa2 147 ----PF----P---QSNAPIMDEEREIPERSWNS--------GHEW-VTD-FKGKTVWFVPSIKAGNDIAACLRKNGKKV 205 (305)
T ss_dssp ----SS----C---CCSSCEEEEECCCCCSCCSS--------CCHH-HHS-SCSCEEEECSCHHHHHHHHHHHHHHTCCC
T ss_pred ----ee----c---ccCCcceEEEEeccHHHHHH--------HHHH-HHh-hCCCEEEEeccHHHHHHHHHHHHhCCCCE
Confidence 00 0 00011111111111111000 0111 112 34689999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEE----------Eec----------CCCCHhHHHHH
Q psy8497 293 EYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI----------NLE----------IPHDAATYLHR 352 (2355)
Q Consensus 293 arLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI----------IyD----------SP~SPqSYIQR 352 (2355)
..+||++....+ ..|+++..++||+|+++++|+|++ ++.|| +++ .|.|+.+|+||
T Consensus 206 ~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr 280 (305)
T d2bmfa2 206 IQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQR 280 (305)
T ss_dssp EECCTTCHHHHG----GGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHH
T ss_pred EEeCCcChHHHH----hhhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhh
Confidence 999999865443 467899999999999999999995 45544 233 34589999999
Q ss_pred hhccCCCCCccEEEEEEcc
Q psy8497 353 MGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 353 IGRAGRiGQkGkVIVLVSs 371 (2355)
+|||||.|+.+..++++..
T Consensus 281 ~GR~GR~~~~~~~~~~~~~ 299 (305)
T d2bmfa2 281 RGRVGRNPKNENDQYIYMG 299 (305)
T ss_dssp HTTSSCSSSCCCEEEEECS
T ss_pred hcCcCcCCCCceEEEEECC
Confidence 9999999987766655543
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.9e-29 Score=266.27 Aligned_cols=198 Identities=33% Similarity=0.532 Sum_probs=178.4
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
.|+++++++ |++.|...||..|+|+|.++|+.+++|+|+|+++|||+|||++|+++++..+.. .....++||++|+++
T Consensus 2 ~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~-~~~~~~~lil~Ptre 80 (207)
T d1t6na_ 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTRE 80 (207)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-CTTCCCEEEECSCHH
T ss_pred CccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecc-cCCCceEEEEeccch
Confidence 699999999 999999999999999999999999999999999999999999999999988763 345678999999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc
Q psy8497 102 IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 102 LAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~ 176 (2355)
|+.|+.+.++.+....+.+.+.+++|+...... ...++|||+||++|.+++....+.+..+.+|||||||+|.+.
T Consensus 81 L~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~ 160 (207)
T d1t6na_ 81 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 160 (207)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS
T ss_pred hhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhc
Confidence 999999999999988877888888888654322 234899999999999999988888999999999999999974
Q ss_pred -ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeec
Q psy8497 177 -GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR 221 (2355)
Q Consensus 177 -GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIr 221 (2355)
+|...+..++..++...|++++|||++..+..+...++.+|..+.
T Consensus 161 ~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~ 206 (207)
T d1t6na_ 161 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 206 (207)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEe
Confidence 788999999999999999999999999998999999999887664
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.6e-28 Score=261.01 Aligned_cols=202 Identities=38% Similarity=0.617 Sum_probs=179.3
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
.+.+.+|+++++++ +++.|...||..|+++|.++++.++.|+|+|+++|||+|||++|+++++..+. ....++++|||
T Consensus 6 ~~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~-~~~~~~~~lil 84 (212)
T d1qdea_ 6 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID-TSVKAPQALML 84 (212)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCC-TTCCSCCEEEE
T ss_pred cccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhh-ccCCCcceEEE
Confidence 45689999999999 99999999999999999999999999999999999999999999999998876 34567889999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL 173 (2355)
+|+++|+.|....+..+.... .+.+....++..... ..+.++|+|+||++|..++....+.+..+++|||||||+|
T Consensus 85 ~pt~el~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~l 163 (212)
T d1qdea_ 85 APTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 163 (212)
T ss_dssp CSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred cccHHHhhhhhhhhccccccc-ccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCceecCcceEEeehhhhhh
Confidence 999999999999999987666 677777776654432 2345899999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeec
Q psy8497 174 INTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR 221 (2355)
Q Consensus 174 kN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIr 221 (2355)
.+.+|...+..++..++..+|++++|||++..+..+...++.+|+.+.
T Consensus 164 ld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~ 211 (212)
T d1qdea_ 164 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 211 (212)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC
T ss_pred cccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999998764
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=2.6e-28 Score=259.99 Aligned_cols=199 Identities=33% Similarity=0.544 Sum_probs=178.0
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCC-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGY-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGR-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
++|+++++++ |++.|.+.||..|+|+|.++|+.+++++ ++|+.+|||+|||++|+++++..... ..++++|||||+
T Consensus 4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~--~~~~~~lil~pt 81 (208)
T d1hv8a1 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE--NNGIEAIILTPT 81 (208)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--SSSCCEEEECSC
T ss_pred cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc--ccCcceEEEeec
Confidence 5899999888 9999999999999999999999999875 89999999999999999999876553 567789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC---CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP---KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq---irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~ 176 (2355)
++|+.|+.+++..+.... .+++..++|+...... ...++|||+||++|.+++....+.+..+.+|||||||+|.+.
T Consensus 82 ~~l~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~ 160 (208)
T d1hv8a1 82 RELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 160 (208)
T ss_dssp HHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred cccchhhhhhhhhhcccC-CeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcC
Confidence 999999999999998766 7888888888654322 234899999999999999988888999999999999999999
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
++...+..++..++...|++++|||++.++..++..++.++..++..
T Consensus 161 ~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~~ 207 (208)
T d1hv8a1 161 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK 207 (208)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC
T ss_pred CChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHHCCCCeEEEEE
Confidence 99999999999999999999999999999999999999988877643
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.95 E-value=2.4e-27 Score=258.48 Aligned_cols=211 Identities=25% Similarity=0.443 Sum_probs=184.8
Q ss_pred ccccccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc---
Q psy8497 11 TKDVLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--- 86 (2355)
Q Consensus 11 Tk~~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek--- 86 (2355)
+....+..+++.+|+++++++ |++.|...||..|+|+|.++|+.+++|+|+|+++|||+|||++|+++++..+...
T Consensus 10 ~~~~~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~ 89 (238)
T d1wrba1 10 TGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLN 89 (238)
T ss_dssp ECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-
T ss_pred eCCCCCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccc
Confidence 334455677899999999999 9999999999999999999999999999999999999999999999999988632
Q ss_pred -----CCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhhcc
Q psy8497 87 -----PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLKYL 157 (2355)
Q Consensus 87 -----r~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr~L 157 (2355)
....+++|||||+++|+.|+.+.+..+.... ++++..+.|+.... .....++|||+||++|.+++....+
T Consensus 90 ~~~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~ 168 (238)
T d1wrba1 90 QQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKI 168 (238)
T ss_dssp -----CCBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSB
T ss_pred cccccCCCCceEEEeccchhhhcchheeeeecccCC-CcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCce
Confidence 2345789999999999999999999998776 68888888876533 2334589999999999999998888
Q ss_pred cCcCceEEEecccchhcccChHHHHHHHHHhCCC----CceEEEEEeccChhHHHHHHHhccCCeeecc
Q psy8497 158 NMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP----MKQMLVVSATYSHDNLATLQKYMVDPLLIRP 222 (2355)
Q Consensus 158 dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp----nrQILLLSATLS~EILElLkKfLrdPvIIrV 222 (2355)
.+..+.++||||+|+|++.+|...+..++..+.. ..|+|++|||++.++..+...+|.+|+.+.+
T Consensus 169 ~l~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~v 237 (238)
T d1wrba1 169 SLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237 (238)
T ss_dssp CCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eccccceeeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEe
Confidence 8999999999999999999999999999987642 4699999999999999999999998877643
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.4e-27 Score=247.66 Aligned_cols=199 Identities=36% Similarity=0.565 Sum_probs=181.1
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
+|+++++++ |++.|.+.||..|+|+|.++++.+++|+++|+.+|||+|||++|+++++..+.. .....++++++|+..
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~-~~~~~~~~~~~~~~~ 80 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP-KLNKIQALIMVPTRE 80 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-TSCSCCEEEECSSHH
T ss_pred ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhcccccccccc-ccccccceeeccchh
Confidence 699999999 999999999999999999999999999999999999999999999999988763 455678999999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 102 IAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 102 LAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
++.|...++..+.... ++++...+|+.... .....++|||+||++|.+++....+.+..+.+|||||||+|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~ 159 (206)
T d1s2ma1 81 LALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 159 (206)
T ss_dssp HHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred hhhhhhhhhhhccccc-CeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhh
Confidence 9999999999887665 89999999886543 223558999999999999999988899999999999999999999
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
|...+..++..++..+|++++|||++.++..++..++.+|..+.+.
T Consensus 160 f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 160 FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred hHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEee
Confidence 9999999999999999999999999999999999999999887654
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.94 E-value=3.3e-26 Score=240.55 Aligned_cols=200 Identities=30% Similarity=0.482 Sum_probs=173.8
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
..|+++++.+ |++.|...||..|+|+|.++|+.+++|+|+|+++|||+|||++|+++++..+.. ......+++++|+.
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~-~~~~~~~~~~~~~~ 79 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-ERAEVQAVITAPTR 79 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEECSSH
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeecccccc-cccccccccccccc
Confidence 3699999999 999999999999999999999999999999999999999999999999988763 34566789999999
Q ss_pred HHHHHHHHHHHHHhcccC---CcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh
Q psy8497 101 EIAVQITDVVRSVGAHVK---NLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 101 ALAqQ~anwLREFgk~AP---gLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL 173 (2355)
.++.+...++........ ...+....+..... .....++|+|+||+++..++......+..+.++||||||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~l 159 (209)
T d1q0ua_ 80 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 159 (209)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred chhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccc
Confidence 999999988887654432 34455556655332 23344899999999999999888888899999999999999
Q ss_pred cccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeecc
Q psy8497 174 INTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRP 222 (2355)
Q Consensus 174 kN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrV 222 (2355)
.+.+|...+..++..+++..|++++|||++.++..++..++.+|..+.+
T Consensus 160 l~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 160 LDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred cccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999887754
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.1e-22 Score=211.40 Aligned_cols=159 Identities=33% Similarity=0.555 Sum_probs=143.9
Q ss_pred cccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHH
Q psy8497 229 LLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASL 308 (2355)
Q Consensus 229 ~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeIL 308 (2355)
...+.+++..++.. .+...|..+|...+..++||||+++++++.|+.+|...|+.+..+||+|+..+|..++
T Consensus 4 l~~i~q~yi~v~~~--------~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~ 75 (171)
T d1s2ma2 4 LKGITQYYAFVEER--------QKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVF 75 (171)
T ss_dssp CTTEEEEEEECCGG--------GHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHH
T ss_pred ccceEEEEEEcCHH--------HHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhh
Confidence 45677788776554 4678888888888888999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 309 DSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 309 ErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
+.|+.|.++|||||+++++|||+|.+++||+||+|+++..|+||+||+||.|+.|.+|+|+...+...+..+.+.++.++
T Consensus 76 ~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~ 155 (171)
T d1s2ma2 76 HEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEI 155 (171)
T ss_dssp HHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred hhcccCccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888877766
Q ss_pred ccccCCC
Q psy8497 389 AFNVGLV 395 (2355)
Q Consensus 389 aLe~eIV 395 (2355)
...+..+
T Consensus 156 ~~~p~~~ 162 (171)
T d1s2ma2 156 AAIPATI 162 (171)
T ss_dssp EECCSSC
T ss_pred CCCCccc
Confidence 5444433
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.88 E-value=1.5e-22 Score=212.03 Aligned_cols=181 Identities=15% Similarity=0.216 Sum_probs=142.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
++..|...||.+|+|+|.+++..+++++++||++|||+|||++++++++..+.. .+++|||+|+++|+.|+.++++
T Consensus 14 ~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~----~~~vl~l~P~~~L~~q~~~~~~ 89 (202)
T d2p6ra3 14 AVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALAGEKYESFK 89 (202)
T ss_dssp HHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc----cCcceeecccHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999888887763 5689999999999999999998
Q ss_pred HHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHH---HHHH
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDIT---WIYS 187 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLe---eILs 187 (2355)
++... ...+..+.++..... ....+.|+++||..+..++......+..+++||+||+|.+.+..+...+. ..+.
T Consensus 90 ~~~~~--~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~ 167 (202)
T d2p6ra3 90 KWEKI--GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR 167 (202)
T ss_dssp TTTTT--TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH
T ss_pred HHhhc--cccceeeccCcccccccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHHHH
Confidence 87654 345666666654432 33458899999999988888777778889999999999998776544443 3344
Q ss_pred hCCCCceEEEEEeccChhHHHHHHHhccCCeee
Q psy8497 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPLLI 220 (2355)
Q Consensus 188 ~LppnrQILLLSATLS~EILElLkKfLrdPvII 220 (2355)
.+++..|+|+||||+++ ...+..|+.....+
T Consensus 168 ~~~~~~~~l~lSATl~n--~~~~~~~l~~~~~~ 198 (202)
T d2p6ra3 168 RMNKALRVIGLSATAPN--VTEIAEWLDADYYV 198 (202)
T ss_dssp HHCTTCEEEEEECCCTT--HHHHHHHTTCEEEE
T ss_pred hcCCCCcEEEEcCCCCc--HHHHHHHcCCCeee
Confidence 45678899999999864 24456777655443
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.1e-22 Score=208.75 Aligned_cols=156 Identities=29% Similarity=0.526 Sum_probs=141.1
Q ss_pred ccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHH
Q psy8497 228 PLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307 (2355)
Q Consensus 228 ~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeI 307 (2355)
....++|.+..++.. ..+...|..++......++||||+++..++.++.+|...++.+..+||+|+..+|..+
T Consensus 4 tl~~i~q~~v~v~~~-------~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 76 (168)
T d2j0sa2 4 TLEGIKQFFVAVERE-------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 76 (168)
T ss_dssp SCTTEEEEEEEESST-------THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHH
T ss_pred CCCCcEEEEEEecCh-------HHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHH
Confidence 346778888777654 2466778888877777899999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccc
Q psy8497 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLD 387 (2355)
Q Consensus 308 LErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLK 387 (2355)
++.|++|+++|||||+++++|||+|.+++||+||+|+++..|+||+||+||.|+.|.+|+|+...+...+..+.+.++.+
T Consensus 77 ~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~ 156 (168)
T d2j0sa2 77 MKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 156 (168)
T ss_dssp HHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred HHHHhcCCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888887777665
Q ss_pred ccc
Q psy8497 388 HAF 390 (2355)
Q Consensus 388 LaL 390 (2355)
+..
T Consensus 157 i~e 159 (168)
T d2j0sa2 157 IDE 159 (168)
T ss_dssp CEE
T ss_pred CCC
Confidence 543
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=2.5e-22 Score=208.14 Aligned_cols=143 Identities=31% Similarity=0.504 Sum_probs=128.2
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccC
Q psy8497 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGID 330 (2355)
Q Consensus 251 sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLD 330 (2355)
.+...|..++...+..++||||+++..++.|+..|...++.+..+||+|+..+|..+++.|+.++++|||||+++++|||
T Consensus 13 ~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv~~rGiD 92 (162)
T d1fuka_ 13 YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 92 (162)
T ss_dssp GHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCC
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccceeecccccccccc
Confidence 36677888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccC
Q psy8497 331 AANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVG 393 (2355)
Q Consensus 331 LPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~e 393 (2355)
+|.+++||+||+|+++..|+||+||+||.|+.|.+++|+...+...+..+.+.++.++...+.
T Consensus 93 i~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~ip~ 155 (162)
T d1fuka_ 93 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 155 (162)
T ss_dssp CCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred CCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCcCCCCCh
Confidence 999999999999999999999999999999999999999999999988888877776654443
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.87 E-value=7.3e-22 Score=201.93 Aligned_cols=149 Identities=28% Similarity=0.484 Sum_probs=134.0
Q ss_pred cceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHH
Q psy8497 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310 (2355)
Q Consensus 231 eVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILEr 310 (2355)
.+++.+..++.. .+...|.++|... ..++||||++++.++.|+.+|...++.+..+|++++..+|..+++.
T Consensus 3 nI~~~~i~v~~~--------~K~~~L~~ll~~~-~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~ 73 (155)
T d1hv8a2 3 NIEQSYVEVNEN--------ERFEALCRLLKNK-EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRL 73 (155)
T ss_dssp SSEEEEEECCGG--------GHHHHHHHHHCST-TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHH
T ss_pred CeEEEEEEeChH--------HHHHHHHHHHccC-CCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhh
Confidence 456666666543 4677888888764 4589999999999999999999999999999999999999999999
Q ss_pred HhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 311 FRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
|+.|+..|||||+++++|||+|.+++||+||+|+++..|+||+||+||.|+.|.+|+|+...+...+..+.+.++.++
T Consensus 74 f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~i 151 (155)
T d1hv8a2 74 FKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKI 151 (155)
T ss_dssp HHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred hhcccceeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998888888877666554
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.7e-21 Score=202.58 Aligned_cols=149 Identities=35% Similarity=0.557 Sum_probs=131.0
Q ss_pred ceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHH
Q psy8497 232 VKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSF 311 (2355)
Q Consensus 232 VrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErF 311 (2355)
+.+.+..+... .+...|.+++......++||||++++.++.|+++|...++.+..+||+|+..+|..+++.|
T Consensus 2 l~q~~v~~~~~--------~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F 73 (168)
T d1t5ia_ 2 LQQYYVKLKDN--------EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 73 (168)
T ss_dssp CEEEEEECCGG--------GHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEEeChH--------HHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhh
Confidence 45666666543 5778899999888888999999999999999999999999999999999999999999999
Q ss_pred hCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc-CHHHHHHHHHhhcccc
Q psy8497 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE-SLVKFHSLMGEINLDH 388 (2355)
Q Consensus 312 RSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd-DVEeIEsLrReLKLKL 388 (2355)
++|+++|||||+++++|||+|.+++||+|++|+++..|+||+||+||.|+.+.+|+|+... +...+..+...+...+
T Consensus 74 ~~g~~~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~ 151 (168)
T d1t5ia_ 74 KDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 151 (168)
T ss_dssp HTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCE
T ss_pred ccccceeeeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999999999998764 3445555555554443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.84 E-value=5e-21 Score=197.66 Aligned_cols=161 Identities=16% Similarity=0.228 Sum_probs=128.9
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
-+|++||.+++..+. ++++||++|||+|||+++++++...+.+ .+.++|||+|+++|+.|+.+.+.+++... +.+
T Consensus 8 ~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~---~~~~il~i~P~~~L~~q~~~~~~~~~~~~-~~~ 82 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEK 82 (200)
T ss_dssp HCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGG
T ss_pred CCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHh---cCCcEEEEcCchHHHHHHHHHHHHhhccc-ccc
Confidence 389999999999876 4579999999999999988877766653 35689999999999999999999997655 677
Q ss_pred EEEEECCccccCC---CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 122 VDYFIGGTQVERP---KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 122 VVvytGGkq~rkq---irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
+..+.++...... .....|+++||+.+...+....+.+..+++|||||||.+........+...+.......++++|
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (200)
T d1wp9a1 83 IVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGL 162 (200)
T ss_dssp EEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEE
T ss_pred eeeeecccchhHHHHhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEEEE
Confidence 7777766443221 1226799999999998888888888899999999999988766555555555555667899999
Q ss_pred EeccChhHH
Q psy8497 199 SATYSHDNL 207 (2355)
Q Consensus 199 SATLS~EIL 207 (2355)
||||.....
T Consensus 163 SATp~~~~~ 171 (200)
T d1wp9a1 163 TASPGSTPE 171 (200)
T ss_dssp ESCSCSSHH
T ss_pred EecCCCcHH
Confidence 999865443
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.3e-21 Score=202.68 Aligned_cols=183 Identities=22% Similarity=0.294 Sum_probs=137.7
Q ss_pred CcccCCcHH-HHHHHHHC-CCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 23 ENDVLIEKP-IRQGLQEN-GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~-GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.+|.+++.+ +...|+.. ||..|+|||.++++.+++++++||++|||+|||++|+++++. ...+++|++|++
T Consensus 3 ~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~-------~~~~~~~v~P~~ 75 (206)
T d1oywa2 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL-------LNGLTVVVSPLI 75 (206)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH-------SSSEEEEECSCH
T ss_pred chhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhh-------ccCceEEeccch
Confidence 467788888 77777775 999999999999999999999999999999999999888763 256899999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCcccc--------CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 101 EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE--------RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 101 ALAqQ~anwLREFgk~APgLrVVvytGGkq~r--------kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
+|+.|+.+.++.++... .......... .......|+++|++.+.............+.+|||||+|.
T Consensus 76 ~L~~q~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~ 150 (206)
T d1oywa2 76 SLMKDQVDQLQANGVAA-----ACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHC 150 (206)
T ss_dssp HHHHHHHHHHHHTTCCE-----EEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG
T ss_pred hhhhhHHHHHHhhcccc-----cccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeee
Confidence 99999999998875332 2222221110 0112378999999988655555555677899999999999
Q ss_pred hcccCh-----HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh--ccCCe
Q psy8497 173 LINTGF-----VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY--MVDPL 218 (2355)
Q Consensus 173 LkN~GF-----~SrLeeILs~LppnrQILLLSATLS~EILElLkKf--LrdPv 218 (2355)
+.++++ +..+..+...+ +..|+|+||||+++.+.+.+..+ +.+|+
T Consensus 151 ~~~~~~~~~~~~~~~~~l~~~~-~~~~ii~lSATl~~~v~~di~~~L~l~~p~ 202 (206)
T d1oywa2 151 ISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL 202 (206)
T ss_dssp GCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred eeccccchHHHHHHHHHHHHhC-CCCceEEEEeCCCHHHHHHHHHHcCCCCCc
Confidence 887653 12333444445 46899999999998876655544 56664
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.3e-20 Score=202.02 Aligned_cols=131 Identities=20% Similarity=0.359 Sum_probs=122.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 252 EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 252 KkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
+...|+.+|......++||||+++..++.|+.+|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+
T Consensus 17 k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~~~GiD~ 96 (200)
T d1oywa3 17 PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 96 (200)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecchhhhccCC
Confidence 45678888887777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
|+|++||+|++|.++..|+|++|||||.|++|.+++|+...+...++.++.
T Consensus 97 p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i~ 147 (200)
T d1oywa3 97 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 147 (200)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999998877777766643
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.83 E-value=4.2e-21 Score=205.46 Aligned_cols=180 Identities=13% Similarity=0.171 Sum_probs=127.2
Q ss_pred cCcccCCcHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 22 ~SFEeLlLkpLLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
..|.+..+......+...++.+|+++|+++++.++.|+++||++|||+|||++++++++..+. .+.++|||+|+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~----~~~rvliv~Pt~~ 97 (237)
T d1gkub1 22 CLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLAL----KGKRCYVIFPTSL 97 (237)
T ss_dssp SCCTTHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHT----TSCCEEEEESCHH
T ss_pred ccCccchhHHHHHHHHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHH----hcCeEEEEeccHH
Confidence 334333333323445566888999999999999999999999999999999999888876654 3678999999999
Q ss_pred HHHHHHHHHHHHhcccCCcE----EEEEECCcccc------CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 102 IAVQITDVVRSVGAHVKNLH----VDYFIGGTQVE------RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 102 LAqQ~anwLREFgk~APgLr----VVvytGGkq~r------kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
|+.|+.++++++.... ++. +..+.+..... .....++|+|+||++|.+. ...+..+++|||||+|
T Consensus 98 La~Q~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~----~~~~~~~~~vVvDE~d 172 (237)
T d1gkub1 98 LVIQAAETIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKH----YRELGHFDFIFVDDVD 172 (237)
T ss_dssp HHHHHHHHHHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHC----STTSCCCSEEEESCHH
T ss_pred HHHHHHHHHHHHHHHc-CCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHh----hhhcCCCCEEEEEChh
Confidence 9999999999987654 222 33333332211 1122378999999987542 3346789999999999
Q ss_pred hhcccChHHHHHHHHHh-------------CCCCceEEEEEeccChhHHHHHHH
Q psy8497 172 KLINTGFVEDITWIYSQ-------------LPPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~-------------LppnrQILLLSATLS~EILElLkK 212 (2355)
.+.+.. ..+..++.. .+...|+|++|||++..+...+.+
T Consensus 173 ~~l~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r 224 (237)
T d1gkub1 173 AILKAS--KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFR 224 (237)
T ss_dssp HHHTST--HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHH
T ss_pred hhhhcc--cchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHH
Confidence 987655 222222222 244568999999998665444433
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=3.7e-19 Score=188.76 Aligned_cols=134 Identities=20% Similarity=0.252 Sum_probs=113.3
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP 343 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP 343 (2355)
.+.++||||.++++++.|+.+|...|+.+..+||+|++.+|..+++.|++|+++|||+|.++++|||+|++++||++++|
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~~~~~ 109 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 109 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEEEeccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-----CHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH-----HHhhccccccccCCCccc
Q psy8497 344 H-----DAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL-----MGEINLDHAFNVGLVPDN 398 (2355)
Q Consensus 344 ~-----SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL-----rReLKLKLaLe~eIVPkg 398 (2355)
. +..+|+|++|||||.+. +.++++....+..+.+.+ ++..+..+...+.++|..
T Consensus 110 ~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~~~~~~i~et~rRr~iq~~~N~~h~i~p~~ 173 (174)
T d1c4oa2 110 KEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPET 173 (174)
T ss_dssp SCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred cccccchhHHHHHHhhhhhhcCC-CeeEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 6 56889999999999654 888888876665544333 223344445555565553
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.76 E-value=1.5e-18 Score=184.11 Aligned_cols=109 Identities=22% Similarity=0.345 Sum_probs=99.4
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH 344 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~ 344 (2355)
..++||||+++..++.++.+|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|.|++||+||+|.
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~~d~p~ 110 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK 110 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEETTTTS
T ss_pred CCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEEEecCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 345 -----DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 345 -----SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
+...|+||+|||||.|. +.++++......
T Consensus 111 ~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~~~~ 144 (181)
T d1t5la2 111 EGFLRSERSLIQTIGRAARNAN-GHVIMYADTITK 144 (181)
T ss_dssp CSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCH
T ss_pred ccccccHHHHHHHHHhhccccC-ceeEeecchhhH
Confidence 78999999999999876 445555544433
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.73 E-value=1e-17 Score=186.71 Aligned_cols=192 Identities=18% Similarity=0.154 Sum_probs=131.6
Q ss_pred hhhhhhhhccccccCccc-ccCcccCCcHHHHHHHHHCCC------CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHH
Q psy8497 3 HDIQKCARTKDVLSNIDV-LFENDVLIEKPIRQGLQENGF------VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 3 ~DIesr~rTk~~DSsiDk-V~SFEeLlLkpLLK~Lqa~GF------~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVA 75 (2355)
.+|.+.+...+..-.++. ...........+.+.+....+ .+|++||.+++..++..+.+||.+|||+|||+++
T Consensus 66 ~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~ 145 (282)
T d1rifa_ 66 GQIKKFCDNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQ 145 (282)
T ss_dssp GGHHHHHHHTTCCEEECGGGGCCCCCCHHHHHHHHHTCCCEETTEECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHH
T ss_pred HHHHHHHHhcCCceeeeccccccccccchhcccccccccccccCCccccchHHHHHHHHHHhcCCceeEEEcccCccHHH
Confidence 345555555444333322 223333333346666665533 3799999999999999999999999999999887
Q ss_pred HHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc-CCCCCCcEEEECHHHHHHHHHh
Q psy8497 76 VVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKL 154 (2355)
Q Consensus 76 LIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r-kqirq~DILVTTPErLLDLLdr 154 (2355)
...+...+. ....++|||||+++|+.||.+.+.+++... ...+..+.++.... .......|+|+|++.+....
T Consensus 146 ~~i~~~~~~---~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~i~i~t~qs~~~~~-- 219 (282)
T d1rifa_ 146 ALLARYYLE---NYEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP-- 219 (282)
T ss_dssp HHHHHHHHH---HCSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSC--
T ss_pred HHHHHHhhh---cccceEEEEEcCchhHHHHHHHHHHhhccc-cccceeecceecccccccccceEEEEeeehhhhhc--
Confidence 654433333 234689999999999999999999986544 44455555544332 23344789999998874332
Q ss_pred hcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 155 KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 155 r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
...+..+++|||||||++.. ..+..++..+......++|||||...
T Consensus 220 -~~~~~~f~~VIvDEaH~~~a----~~~~~il~~~~~~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 220 -KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp -GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTT
T ss_pred -ccccCCCCEEEEECCCCCCc----hhHHHHHHhccCCCeEEEEEeecCCC
Confidence 22356799999999999764 34556666665555679999998654
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.71 E-value=1.2e-17 Score=183.32 Aligned_cols=124 Identities=27% Similarity=0.429 Sum_probs=108.2
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeC--------CCCHHHHHHHHHHHhCCCccEEEEeccc
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG--------AQDQKARLASLDSFKRGKVRILVTTDLA 325 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHG--------gMSqEERqeILErFRSGEIdVLVSTSAL 325 (2355)
..|..++......++||||+++..++.+++.|...++++..++| +|+..+|..+++.|++|+++|||||+++
T Consensus 150 ~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~~~ 229 (286)
T d1wp9a2 150 EIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVG 229 (286)
T ss_dssp HHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGG
T ss_pred HHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEccce
Confidence 33444555666789999999999999999999999999998877 4556689999999999999999999999
Q ss_pred ccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHH
Q psy8497 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFH 378 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIE 378 (2355)
++|||+|.|++||+||+||++..|+||+||+||. .++.+++|+...+.++..
T Consensus 230 ~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~-~~~~~~~l~~~~~~ee~~ 281 (286)
T d1wp9a2 230 EEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILMAKGTRDEAY 281 (286)
T ss_dssp GGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC-CCSEEEEEEETTSHHHHH
T ss_pred eccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCC-CCCEEEEEEeCCCHHHHH
Confidence 9999999999999999999999999999999995 578999999888776543
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.68 E-value=9e-17 Score=170.20 Aligned_cols=136 Identities=21% Similarity=0.165 Sum_probs=101.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
+|++||.+++..++.++++||++|||+|||++++..+. .+ ..++|||||+++|+.||.+.+..++. ..+
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~------~~~~Liv~p~~~L~~q~~~~~~~~~~----~~~ 138 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN-EL------STPTLIVVPTLALAEQWKERLGIFGE----EYV 138 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHH-HS------CSCEEEEESSHHHHHHHHHHHGGGCG----GGE
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHH-Hh------cCceeEEEcccchHHHHHHHHHhhcc----cch
Confidence 69999999999999998999999999999987764432 22 45799999999999999998887743 234
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATL 202 (2355)
..+.|... ....|+|+|++.+...... ....|++|||||||++.... +..++..++ ...+|+||||+
T Consensus 139 ~~~~~~~~-----~~~~i~i~t~~~~~~~~~~---~~~~~~lvIiDEaH~~~a~~----~~~i~~~~~-~~~~lgLTATl 205 (206)
T d2fz4a1 139 GEFSGRIK-----ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAES----YVQIAQMSI-APFRLGLTATF 205 (206)
T ss_dssp EEESSSCB-----CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTT----HHHHHHTCC-CSEEEEEEESC
T ss_pred hhcccccc-----cccccccceehhhhhhhHh---hCCcCCEEEEECCeeCCcHH----HHHHHhccC-CCcEEEEecCC
Confidence 55555432 2246999999987654432 13578899999999987543 334444443 45678999997
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.64 E-value=6.4e-17 Score=169.78 Aligned_cols=118 Identities=19% Similarity=0.349 Sum_probs=103.4
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccC
Q psy8497 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGID 330 (2355)
Q Consensus 251 sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLD 330 (2355)
.+...|.+++......++||||++...++.|.+.|. +..+||.++..+|..+++.|++|+++|||+|+++++|||
T Consensus 79 ~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gid 153 (200)
T d2fwra1 79 NKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGID 153 (200)
T ss_dssp HHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSC
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhcccC
Confidence 355778888888877899999999999999987763 456899999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCHhHHHHHhhccCCCCCc---cEEEEEEcccC
Q psy8497 331 AANVDLVINLEIPHDAATYLHRMGRAGRYGTR---GLVITIVSAES 373 (2355)
Q Consensus 331 LPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQk---GkVIVLVSsdD 373 (2355)
+|.+++||++++|||+..++||+||++|.|+. ..++.|+..++
T Consensus 154 l~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~T 199 (200)
T d2fwra1 154 VPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199 (200)
T ss_dssp SCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecCCC
Confidence 99999999999999999999999999999853 35555665543
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.61 E-value=1.7e-15 Score=167.67 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=109.1
Q ss_pred CCcHHHHHHHHHHHc---------CCcEEEEccCCchHHHHHHHHHHHHHHhcC---CCCCeEEEEcccHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLN---------GYDAIVQSKSGTGKSIVFVVAALNKLIKLP---VQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 43 eLRPYQeEALn~LLS---------GRNVILAAPTGSGKTLVALIAILerL~ekr---~qggRVLILVPTRALAqQ~anwL 110 (2355)
.|+|||.+++.||+. +..+||+++||+|||++++..+...+.... ....++|||||.. |+.||.+.+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~s-l~~qW~~Ei 133 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS-LVRNWYNEV 133 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccch-hhHHHHHHH
Confidence 799999999999853 346999999999999776544433333221 1234699999986 678888888
Q ss_pred HHHhcccCCcEEEEEECCcccc------------CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVE------------RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~r------------kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
.++... .+.++.++++.... ......+|+|+||+.+... ...+....|++|||||+|++.+..
T Consensus 134 ~k~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~--~~~l~~~~~~~vI~DEaH~ikn~~- 208 (298)
T d1z3ix2 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH--AEVLHKGKVGLVICDEGHRLKNSD- 208 (298)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH--TTTTTTSCCCEEEETTGGGCCTTC-
T ss_pred HhhcCC--ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccc--hhcccccceeeeeccccccccccc-
Confidence 887643 24555666654221 1122368999999988533 344556678999999999999876
Q ss_pred HHHHHHHHHhCCCCceEEEEEeccChhHH
Q psy8497 179 VEDITWIYSQLPPMKQMLVVSATYSHDNL 207 (2355)
Q Consensus 179 ~SrLeeILs~LppnrQILLLSATLS~EIL 207 (2355)
......+..+. ....++|||||..+..
T Consensus 209 -s~~~~a~~~l~-~~~rllLTGTPi~N~~ 235 (298)
T d1z3ix2 209 -NQTYLALNSMN-AQRRVLISGTPIQNDL 235 (298)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGG
T ss_pred -chhhhhhhccc-cceeeeecchHHhhhh
Confidence 44444455553 4567899999986644
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.60 E-value=2.7e-16 Score=160.40 Aligned_cols=99 Identities=23% Similarity=0.340 Sum_probs=89.2
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEec--
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLE-- 341 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyD-- 341 (2355)
..+++||||++++.++.|++.|...|+.+..+|++|+. +.|+++..+|||||+++++||| |++++||+++
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~-------~~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~ 105 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIPTNGDVVVVATDALMTGFT-GDFDSVIDCNTS 105 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCS-------CCCTTSSCEEEEESSSSCSSSC-CCBSEEEECSEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchh-------hhhhhhhcceeehhHHHHhccc-cccceEEEEEec
Confidence 34699999999999999999999999999999999984 4578999999999999999999 9999999865
Q ss_pred --CCCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 342 --IPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 342 --SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
+|.++..|+||+||||| |++|. ++|+.+.
T Consensus 106 ~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~ 136 (138)
T d1jr6a_ 106 DGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPG 136 (138)
T ss_dssp TTEECCHHHHHHHHTTBCS-SSCEE-EEECCSS
T ss_pred CCCCCCHHHHHhHhccccC-CCCcE-EEEEcCC
Confidence 58899999999999999 99994 6676654
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.60 E-value=1.7e-15 Score=173.63 Aligned_cols=126 Identities=16% Similarity=0.233 Sum_probs=106.6
Q ss_pred hHHHHHHHHHh---cCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCc---cEEEEecc
Q psy8497 251 DEEKKLVQLLS---QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV---RILVTTDL 324 (2355)
Q Consensus 251 sKkeaLLqLLe---rl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEI---dVLVSTSA 324 (2355)
.+...|..+|. ...+.|||||++++.+++.|..+|...|+.+.+++|.++..+|..+++.|+++.. -+|++|.+
T Consensus 101 ~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~a 180 (346)
T d1z3ix1 101 GKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKA 180 (346)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecchh
Confidence 34444444443 3446799999999999999999999999999999999999999999999997643 36889999
Q ss_pred cccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE--EEEEEcccCHHH
Q psy8497 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL--VITIVSAESLVK 376 (2355)
Q Consensus 325 LGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk--VIVLVSsdDVEe 376 (2355)
+++||||+.+++||+||++|||..+.|++||++|+|+... ++.|+...+++.
T Consensus 181 gg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe 234 (346)
T d1z3ix1 181 GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 234 (346)
T ss_dssp SCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred hhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHH
Confidence 9999999999999999999999999999999999997654 455555555544
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.60 E-value=8.4e-16 Score=147.14 Aligned_cols=136 Identities=17% Similarity=0.234 Sum_probs=91.1
Q ss_pred HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC
Q psy8497 55 VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP 134 (2355)
Q Consensus 55 LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq 134 (2355)
+.+++++||++|||+|||++++.+++..+.. .+.++||++|++.|+.|+.+++..+ .+.+..... ....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~---~~~~vli~~p~~~l~~q~~~~~~~~-------~~~~~~~~~-~~~~ 72 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAF-SAHG 72 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCC-CCCC
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhh---cCceeeeeecchhHHHHHHHHhhhh-------hhhhccccc-cccc
Confidence 3457889999999999999887777766653 4678999999999988887765432 222222211 1122
Q ss_pred CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHH-HHHHHHHhCCCCceEEEEEeccC
Q psy8497 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVE-DITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 135 irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~S-rLeeILs~LppnrQILLLSATLS 203 (2355)
.....+++.|...+.... .....+.+|++|||||||.+....+.. .+...+.. ....++|+|||||+
T Consensus 73 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~-~~~~~~l~lTATPp 140 (140)
T d1yksa1 73 SGREVIDAMCHATLTYRM-LEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPP 140 (140)
T ss_dssp CSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCT
T ss_pred ccccchhhhhHHHHHHHH-hccccccceeEEEEccccccChhhHHHHHHHHHHhh-CCCCCEEEEEcCCC
Confidence 223557778877765543 345567899999999999875443221 12222222 35789999999986
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.58 E-value=2.2e-15 Score=160.71 Aligned_cols=120 Identities=22% Similarity=0.341 Sum_probs=100.3
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc------------------------------CCccEEeeCCCCHHH
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA------------------------------NFGAEYLSGAQDQKA 303 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr------------------------------GIKVarLHGgMSqEE 303 (2355)
..+.+++.. .+++||||++++.++.++..|... ..+++++|++|+..+
T Consensus 31 ~l~~~~i~~--~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~ 108 (201)
T d2p6ra4 31 ELVEECVAE--NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQ 108 (201)
T ss_dssp HHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHH
T ss_pred HHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhh
Confidence 344555554 368999999999999888887642 134889999999999
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCccEEEE-------ecCCCCHhHHHHHhhccCCCCC--ccEEEEEEcccCH
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN-------LEIPHDAATYLHRMGRAGRYGT--RGLVITIVSAESL 374 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII-------yDSP~SPqSYIQRIGRAGRiGQ--kGkVIVLVSsdDV 374 (2355)
|..+++.|++|.++|||||.++++|||+|..++||. ++.|.++.+|+||+|||||.|. .|.+++++...+.
T Consensus 109 r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~ 188 (201)
T d2p6ra4 109 RRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 188 (201)
T ss_dssp HHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCCh
Confidence 999999999999999999999999999998888885 5667899999999999999884 6778877766544
Q ss_pred H
Q psy8497 375 V 375 (2355)
Q Consensus 375 E 375 (2355)
.
T Consensus 189 ~ 189 (201)
T d2p6ra4 189 E 189 (201)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.56 E-value=6.2e-15 Score=157.05 Aligned_cols=156 Identities=14% Similarity=0.234 Sum_probs=107.4
Q ss_pred CCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+|||.+++.|+.. +..+||+++||+|||++++..+ ..+.. .....++|||||. .++.||.+.+.++..
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~-~~~~~-~~~~~~~LIv~p~-~l~~~W~~e~~~~~~--- 85 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKK-ENELTPSLVICPL-SVLKNWEEELSKFAP--- 85 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHH-TTCCSSEEEEECS-TTHHHHHHHHHHHCT---
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhh-hhhhh-cccccccceecch-hhhhHHHHHHHhhcc---
Confidence 799999999998753 4569999999999998876444 44442 2345679999996 556777777777653
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
...+..+ ...........++|+|+||+.+..... +....|.+||+||+|.+++.. ......+..+. ....++|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~~~vvi~~~~~~~~~~~---l~~~~~~~vI~DEah~~k~~~--s~~~~~~~~l~-a~~r~~L 158 (230)
T d1z63a1 86 HLRFAVF-HEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRIAL 158 (230)
T ss_dssp TSCEEEC-SSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEEEE
T ss_pred cccceee-ccccchhhccCcCEEEeeHHHHHhHHH---HhcccceEEEEEhhhcccccc--hhhhhhhhhhc-cceEEEE
Confidence 3344333 222223333448999999998754332 223468899999999998765 33444455554 4567999
Q ss_pred EeccChhHHHHHH
Q psy8497 199 SATYSHDNLATLQ 211 (2355)
Q Consensus 199 SATLS~EILElLk 211 (2355)
||||..+....+.
T Consensus 159 TgTPi~n~~~dl~ 171 (230)
T d1z63a1 159 TGTPIENKVDDLW 171 (230)
T ss_dssp CSSCSTTCHHHHH
T ss_pred ecchHHhHHHHHH
Confidence 9999876555443
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1.4e-14 Score=159.29 Aligned_cols=164 Identities=20% Similarity=0.196 Sum_probs=126.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHc----C--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLN----G--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLS----G--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
.......+.| .|++-|.+++..+.. . .+.+|++.||+|||.+|+.+++..+. .+.+++|++|+..|+.|
T Consensus 45 ~~~~~~~lP~-~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~----~g~qv~~l~Pt~~La~Q 119 (233)
T d2eyqa3 45 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----NHKQVAVLVPTTLLAQQ 119 (233)
T ss_dssp HHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----TTCEEEEECSSHHHHHH
T ss_pred HHhhhhcccc-ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH----cCCceEEEccHHHhHHH
Confidence 3334444555 999999999988764 2 35899999999999999999988776 48899999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+++.+++++..+ ++.+.++++...... .....+|||+|...| ...+.+.++++|||||-|+..
T Consensus 120 ~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l-----~~~~~f~~LgLiIiDEeH~fg--- 190 (233)
T d2eyqa3 120 HYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVDEEHRFG--- 190 (233)
T ss_dssp HHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEESGGGSC---
T ss_pred HHHHHHHHHhhC-CCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhh-----ccCCccccccceeeechhhhh---
Confidence 999999988776 778888888765332 123378999997654 245567899999999999743
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
..-...+......+.+|++||||.+..+....
T Consensus 191 --~kQ~~~l~~~~~~~~~l~~SATPiprtl~~~~ 222 (233)
T d2eyqa3 191 --VRHKERIKAMRANVDILTLTATPIPRTLNMAM 222 (233)
T ss_dssp --HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHH
T ss_pred --hHHHHHHHhhCCCCCEEEEecchhHHHHHHHH
Confidence 22223344444568899999999988765554
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=7.8e-15 Score=163.70 Aligned_cols=164 Identities=23% Similarity=0.271 Sum_probs=124.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHc----C--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLN----G--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLS----G--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+...+..+.| +|++-|.+++..+.. + .+.+|+|.||+|||++|+.+++..+.. +.++++++||..|+.|
T Consensus 73 ~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~----g~q~~~m~Pt~~La~Q 147 (264)
T d1gm5a3 73 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----GFQTAFMVPTSILAIQ 147 (264)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----TSCEEEECSCHHHHHH
T ss_pred HHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc----ccceeEEeehHhhhHH
Confidence 4555566777 899999999999864 2 358999999999999999999988874 7889999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+++.+.+++... ++.+.+++|+..... ....++|||+|..-+. ..+.+.++++|||||-|+..-..
T Consensus 148 h~~~~~~~f~~~-~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~-----~~~~f~~LglviiDEqH~fgv~Q 221 (264)
T d1gm5a3 148 HYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-----EDVHFKNLGLVIIDEQHRFGVKQ 221 (264)
T ss_dssp HHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH-----HCCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHhhhhc-cccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhc-----CCCCccccceeeeccccccchhh
Confidence 999999998776 788999988765432 1234889999986542 34457789999999999864322
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
...+......+.+|+|||||.+..+....
T Consensus 222 -----r~~l~~~~~~~~~l~~SATPiprtl~~~~ 250 (264)
T d1gm5a3 222 -----REALMNKGKMVDTLVMSATPIPRSMALAF 250 (264)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHHH
T ss_pred -----HHHHHHhCcCCCEEEEECCCCHHHHHHHH
Confidence 11111222357899999999988765553
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.50 E-value=1.6e-14 Score=155.89 Aligned_cols=126 Identities=17% Similarity=0.278 Sum_probs=91.7
Q ss_pred hHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhc-CCccEEeeCCCCHHHHHHHHHHHhCC-CccEE-EEeccc
Q psy8497 251 DEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRG-KVRIL-VTTDLA 325 (2355)
Q Consensus 251 sKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrEr-GIKVarLHGgMSqEERqeILErFRSG-EIdVL-VSTSAL 325 (2355)
.+...|..++... .+.+|||||+....++.|..+|... ++.+.++||+++..+|..+++.|+++ ...|| ++|.++
T Consensus 69 ~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~ 148 (244)
T d1z5za1 69 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG 148 (244)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTT
T ss_pred hHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhcccccccc
Confidence 3455555555432 4569999999999999999999764 89999999999999999999999865 45665 456899
Q ss_pred ccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCc--cEEEEEEcccCHHH
Q psy8497 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR--GLVITIVSAESLVK 376 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQk--GkVIVLVSsdDVEe 376 (2355)
+.||||+.+++||+++++|||..+.|++||++|.|+. ..++.|+...+.+.
T Consensus 149 g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Tiee 201 (244)
T d1z5za1 149 GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 201 (244)
T ss_dssp CCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred ccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCCHHH
Confidence 9999999999999999999999999999999999965 45555666666544
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.47 E-value=8.4e-14 Score=136.82 Aligned_cols=126 Identities=16% Similarity=0.115 Sum_probs=86.3
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
+.+||.+|||+|||+++...++ ..+.++||++|++.|+.|+.+.+.++.... .....++.... ...
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~-------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~~---~~~ 74 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYA-------AQGYKVLVLNPSVAATLGFGAYMSKAHGVD----PNIRTGVRTIT---TGS 74 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH-------TTTCCEEEEESCHHHHHHHHHHHHHHHSCC----CEEECSSCEEC---CCC
T ss_pred CEEEEEeCCCCCHHHHHHHHHH-------HcCCcEEEEcChHHHHHHHHHHHHHHhhcc----ccccccccccc---ccc
Confidence 4589999999999976543322 246789999999999999999999876443 23333333222 224
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC--CCceEEEEEecc
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP--PMKQMLVVSATY 202 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp--pnrQILLLSATL 202 (2355)
.++++|+..+.... ...+..+++|||||+|++... ....+..++..+. +..++|+|||||
T Consensus 75 ~~~~~~~~~~~~~~---~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 75 PITYSTYGKFLADG---GCSGGAYDIIICDECHSTDAT-SILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp SEEEEEHHHHHHTT---GGGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred ceEEEeeeeecccc---chhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 68899988764332 334678999999999986533 2233445555443 456899999997
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.41 E-value=2.3e-15 Score=163.11 Aligned_cols=115 Identities=14% Similarity=0.229 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe----ccccccc
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT----DLAARGI 329 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST----SALGEGL 329 (2355)
..|..+|.... .++||||++++.++.|+++|... +||+|++.+|..+++.|++|+++||||| +++++||
T Consensus 15 ~~l~~~l~~~~-~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rGl 87 (248)
T d1gkub2 15 STLSSILEKLG-TGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGL 87 (248)
T ss_dssp TTTHHHHTTSC-SCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCS
T ss_pred HHHHHHHHHhC-CCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCeEEEEeccccchhhhcc
Confidence 44666776543 58999999999999999999863 8999999999999999999999999999 6789999
Q ss_pred CCCC-ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHH
Q psy8497 330 DAAN-VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379 (2355)
Q Consensus 330 DLPa-VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEs 379 (2355)
|+|. |++||+||+|+ |.|++||+||.|+.+.+++++...+...+..
T Consensus 88 Dip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~ 134 (248)
T d1gkub2 88 DLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIER 134 (248)
T ss_dssp CCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHT
T ss_pred CccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHH
Confidence 9996 99999999996 7789999999998887777666655555443
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=3.3e-12 Score=138.83 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=104.9
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
..+...+. .+++|.+.|+.++.++.+.+.|.+. ++++..+||.|+..++..++..|.+|+++|||||.+++.|||+
T Consensus 22 ~~I~~El~--rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDv 99 (211)
T d2eyqa5 22 EAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 99 (211)
T ss_dssp HHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHH--cCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCC
Confidence 44444444 3579999999999999999999885 6789999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCC-CCHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 332 ANVDLVINLEIP-HDAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 332 PaVDTVIIyDSP-~SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
|+++++|+.+++ +-..++-|..||+||.+..+.|++++..
T Consensus 100 pnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~ 140 (211)
T d2eyqa5 100 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 140 (211)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECC
T ss_pred CCCcEEEEecchhccccccccccceeeecCccceEEEEecC
Confidence 999999999998 4899999999999998899999999854
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=9.6e-14 Score=150.06 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=93.9
Q ss_pred CCCeEEEEEcccccHHH--------HHHHHHhc---CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 264 PFNQCVIFSNYQLRPEV--------ICENLANA---NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEi--------LADyLrEr---GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
..+++.|.|+.++..+. ..+.|.+. ++++..+||.|++.+|..++..|++|+++|||||.++++|||+|
T Consensus 28 ~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip 107 (206)
T d1gm5a4 28 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVP 107 (206)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCT
T ss_pred cCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhhcccccc
Confidence 34688888887655443 33344332 56788999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 333 NVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 333 aVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
+|++||++++|. ...++.|..||+||.|..+.|++++...+....+.+
T Consensus 108 ~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl 156 (206)
T d1gm5a4 108 RANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 156 (206)
T ss_dssp TCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhh
Confidence 999999999996 799999999999999999999999876555444443
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.34 E-value=1.5e-13 Score=155.41 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=92.2
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHH----------HHHHHHHhCCCccEEEEeccccc---ccCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR----------LASLDSFKRGKVRILVTTDLAAR---GIDA 331 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEER----------qeILErFRSGEIdVLVSTSALGE---GLDL 331 (2355)
.+++||||++++.++.|+..|...|+++..+|++|++..| ..+++.|..|++++||+|+++.+ |+|+
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDi 115 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSL 115 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCC
Confidence 4699999999999999999999999999999999998876 46788999999999999999877 7788
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEE
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV 369 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLV 369 (2355)
+.+.+||+++.|.|+.+|+||+||+|| |++|....+.
T Consensus 116 d~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~ 152 (299)
T d1a1va2 116 DPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVA 152 (299)
T ss_dssp SSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESC
T ss_pred CcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEe
Confidence 888899999999999999999999999 8888665544
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.77 E-value=7.2e-09 Score=117.02 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=78.1
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE-----
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----- 339 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----- 339 (2355)
.+++||||+++..++.++..|...|.++..|||.+...++. .|.+++.+|||||+++++|||++ +..||-
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~~-~~~vid~g~~~ 110 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAF 110 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTCC-CSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceecC-ceEEEecCcee
Confidence 46899999999999999999999999999999999977755 46789999999999999999994 888883
Q ss_pred ----ecC----------CCCHhHHHHHhhccCCCCCccEEEEEE
Q psy8497 340 ----LEI----------PHDAATYLHRMGRAGRYGTRGLVITIV 369 (2355)
Q Consensus 340 ----yDS----------P~SPqSYIQRIGRAGRiGQkGkVIVLV 369 (2355)
|+. |.+..+..||.||+||.+....++.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y 154 (299)
T d1yksa2 111 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 154 (299)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred ceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEe
Confidence 332 247889999999999976443333333
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.47 E-value=4.1e-07 Score=96.35 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=87.9
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC--------ccE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN--------VDL 336 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa--------VDT 336 (2355)
+.+|||++.+++..+.|..+|...++....++......+-..+-+ .-..-.|.|||+++++|.|+.- --+
T Consensus 34 grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~II~~--Ag~~g~VtIATNmAGRGtDikl~~~v~~~GGLh 111 (175)
T d1tf5a4 34 GQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEE--AGQKGAVTIATNMAGRGTDIKLGEGVKELGGLA 111 (175)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTT--TTSTTCEEEEETTSSTTCCCCCCTTSGGGTSEE
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHHHHHHh--ccCCCceeehhhHHHcCCCccchHHHHhCCCcE
Confidence 468999999999999999999999999999998765444332222 2223469999999999999743 226
Q ss_pred EEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccC
Q psy8497 337 VINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373 (2355)
Q Consensus 337 VIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdD 373 (2355)
||....+.|...+.|..||+||.|.+|...+|++-++
T Consensus 112 VI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 112 VVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred EEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 8889999999999999999999999999999996554
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.09 E-value=4.7e-06 Score=93.04 Aligned_cols=167 Identities=11% Similarity=0.158 Sum_probs=116.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+--.|..|+ |..+.||-|||+++.+++..... .+..|-||+.+.-||..=.+|+..+..++
T Consensus 77 lG~-RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al----~g~~vhvvTvNdyLA~RDae~m~~iy~~l- 148 (273)
T d1tf5a3 77 TGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL----TGKGVHVVTVNEYLASRDAEQMGKIFEFL- 148 (273)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT----TSSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred hce-EEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHh----cCCCceEEecCccccchhhhHHhHHHHHc-
Confidence 565 88999999888888875 99999999999998887765444 36679999999999999999999998888
Q ss_pred CcEEEEEECCccccCC--CCCCcEEEECHHHHH-HHHHhh------cccCcCceEEEecccchhc-ccChHHHH------
Q psy8497 119 NLHVDYFIGGTQVERP--KRPVQIVVGSPGRIK-QMIKLK------YLNMDSVRLFIMDEADKLI-NTGFVEDI------ 182 (2355)
Q Consensus 119 gLrVVvytGGkq~rkq--irq~DILVTTPErLL-DLLdrr------~LdLSkIdLLIVDEAHRLk-N~GF~SrL------ 182 (2355)
++.|.++......... .-.++|+++|...|- ++++.. ....+.+.+.||||++.++ +......+
T Consensus 149 Glsvg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpliisg~~~ 228 (273)
T d1tf5a3 149 GLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQSM 228 (273)
T ss_dssp TCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEE
T ss_pred CCCccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCceEeccCcc
Confidence 9999887665432211 112899999988653 555442 2235778899999999754 32100000
Q ss_pred ----HHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 183 ----TWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 183 ----eeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..+-..+....++.+||+|...+..++..-|
T Consensus 229 ~~a~it~q~~f~~y~~l~gmtgta~~~~~e~~~iy 263 (273)
T d1tf5a3 229 TLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 263 (273)
T ss_dssp EEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHhCCccccHHHHHHHHhcc
Confidence 0011223334588999999876555544443
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=5.4e-05 Score=86.54 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=92.6
Q ss_pred HHHHHHHC-CCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh-cCCCCCeEEEEcccHHHHHHHHHH
Q psy8497 32 IRQGLQEN-GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-LPVQQPQTIILAPTREIAVQITDV 109 (2355)
Q Consensus 32 LLK~Lqa~-GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e-kr~qggRVLILVPTRALAqQ~anw 109 (2355)
+.+.+.+. ....+.+.|.+|+..++.++-+||.+|.|+|||.+.. .++..|.. ....+.++++++||-..+..+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~ 214 (359)
T d1w36d1 136 LAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQMADGERCRIRLAAPTGKAAARLTES 214 (359)
T ss_dssp HHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHH-HHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHH
T ss_pred HHHHHHHhccCcccccHHHHHHHHHHcCCeEEEEcCCCCCceehHH-HHHHHHHHHHhccCCeEEEecCcHHHHHHHHHH
Confidence 44444442 3345688999999999988889999999999997644 33333332 234567899999999988877777
Q ss_pred HHHHhcccCCcEEEEEECCccccCCCCCCc-EEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHh
Q psy8497 110 VRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ 188 (2355)
Q Consensus 110 LREFgk~APgLrVVvytGGkq~rkqirq~D-ILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~ 188 (2355)
+.......+.... .. ..........+ ++-.++.. ..+.........+++|||||+-++. ...+..++..
T Consensus 215 ~~~~~~~~~~~~~-~~---~~~~~~~~t~~~ll~~~~~~--~~~~~~~~~~l~~d~lIIDEaSmv~----~~l~~~ll~~ 284 (359)
T d1w36d1 215 LGKALRQLPLTDE-QK---KRIPEDASTLHRLLGAQPGS--QRLRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDA 284 (359)
T ss_dssp HTHHHHHSSCCSC-CC---CSCSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHT
T ss_pred HHHHHhhcCchhh-hh---hhhhhhhhHHHHHHhhhhcc--hHHHHhhhcccccceeeehhhhccC----HHHHHHHHHH
Confidence 6554322210000 00 00000000011 11111111 1122223345678899999999764 2456677888
Q ss_pred CCCCceEEEEEec
Q psy8497 189 LPPMKQMLVVSAT 201 (2355)
Q Consensus 189 LppnrQILLLSAT 201 (2355)
++...++|++.-.
T Consensus 285 ~~~~~~lILvGD~ 297 (359)
T d1w36d1 285 LPDHARVIFLGDR 297 (359)
T ss_dssp CCTTCEEEEEECT
T ss_pred hcCCCEEEEECCh
Confidence 8888888887653
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.61 E-value=0.00024 Score=76.94 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=88.7
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCC-ccEEEEecccccccCCCC---------
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK-VRILVTTDLAARGIDAAN--------- 333 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGE-IdVLVSTSALGEGLDLPa--------- 333 (2355)
.+.+|||.+.++...+.|...|.+.++...+|+..-...|-. |+. ..|. -.|.|||+++++|.||.=
T Consensus 33 ~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAe-IIA--qAG~~GaVTIATNMAGRGTDI~LGgn~~~~~~ 109 (219)
T d1nkta4 33 KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEAT-IIA--VAGRRGGVTVATNMAGRGTDIVLGGNVDFLTD 109 (219)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHH-HHH--TTTSTTCEEEEETTCSTTCCCCTTCCHHHHHH
T ss_pred cCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHHHHHH-HHH--hcccCCcEEeeccccCCCCceeecCchhhhhH
Confidence 346999999999999999999999999999999975433222 222 2454 369999999999999821
Q ss_pred -------------------------------------------ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEc
Q psy8497 334 -------------------------------------------VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370 (2355)
Q Consensus 334 -------------------------------------------VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVS 370 (2355)
==+||.....-|..-+-|..||+||.|.+|....|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQLRGRsGRQGDPGsSrFflS 189 (219)
T d1nkta4 110 QRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLS 189 (219)
T ss_dssp HHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEE
T ss_pred HHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccccccccccccCCCccceeEEe
Confidence 1257888888899999999999999999999999998
Q ss_pred ccCHHH
Q psy8497 371 AESLVK 376 (2355)
Q Consensus 371 sdDVEe 376 (2355)
-++.-+
T Consensus 190 LeDdLm 195 (219)
T d1nkta4 190 LGDELM 195 (219)
T ss_dssp TTSHHH
T ss_pred ccHHHH
Confidence 766543
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.14 E-value=0.00033 Score=74.48 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
+|+|-|.+++.+ ....++|.|+.|+|||.+.+.-+...+........++|||+++++++..+...+.++.
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 589999999975 3456999999999999776655544444333345679999999999988888887764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.60 E-value=0.002 Score=69.32 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..|++-|.+++.. ....++|.|+.|+|||.+.+-.+...+........++|++++++.++..+...+.+..
T Consensus 10 ~~L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHHHHHHHHHhhc
Confidence 3589999999985 3456999999999999887766655555433344579999999999999998888764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.022 Score=59.47 Aligned_cols=137 Identities=8% Similarity=0.111 Sum_probs=66.6
Q ss_pred CCcHHHHHHHHHHHc----CC---cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 43 KESPIQMAAFPYVLN----GY---DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GR---NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
.++|||..++..+.+ ++ .+|+.||.|+|||..+.. ++..|...........-.++.-. .+.. .
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~-~a~~l~~~~~~~~~~~~~~~~~~-------~i~~--~ 71 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLLCQQPQGHKSCGHCRGCQ-------LMQA--G 71 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHTCSSCBTTBCCSCSHHHH-------HHHH--T
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHH-HHHhcccccccccccccccchhh-------hhhh--c
Confidence 457888888876643 32 389999999999976654 44444321111111111122211 1111 1
Q ss_pred ccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhc--ccCcCceEEEecccchhcccChHHHHHHHHHhCCCCc
Q psy8497 116 HVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKY--LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193 (2355)
Q Consensus 116 ~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~--LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppnr 193 (2355)
..+. +..+....... .| .-+.+..+...-. .......+|||||+|.|... -...+..+++.-+...
T Consensus 72 ~~~~--~~~~~~~~~~~------~i---~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~-a~n~Llk~lEep~~~~ 139 (207)
T d1a5ta2 72 THPD--YYTLAPEKGKN------TL---GVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-AANALLKTLEEPPAET 139 (207)
T ss_dssp CCTT--EEEECCCTTCS------SB---CHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-HHHHHHHHHTSCCTTE
T ss_pred cccc--cchhhhhhccc------cc---ccchhhHHhhhhhhccccCccceEEechhhhhhhh-hhHHHHHHHHhhcccc
Confidence 1112 22222211110 11 1222333333211 12356789999999988643 2345555666555555
Q ss_pred eEEEEEec
Q psy8497 194 QMLVVSAT 201 (2355)
Q Consensus 194 QILLLSAT 201 (2355)
.+|++|-.
T Consensus 140 ~fIl~t~~ 147 (207)
T d1a5ta2 140 WFFLATRE 147 (207)
T ss_dssp EEEEEESC
T ss_pred eeeeeecC
Confidence 55555543
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.49 E-value=0.042 Score=57.47 Aligned_cols=114 Identities=8% Similarity=0.187 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCC---cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH--HHHHHHHHHHHhcccCCcEE
Q psy8497 48 QMAAFPYVLNGY---DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI--AVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 48 QeEALn~LLSGR---NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL--AqQ~anwLREFgk~APgLrV 122 (2355)
|.+.+..+...+ ++|+.+|.|+|||..+. .+...+.......+-++++.|...- +.|+.+ +.++
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~-~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~-i~~~--------- 70 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSL-ELPEYVEKFPPKASDVLEIDPEGENIGIDDIRT-IKDF--------- 70 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHH-HHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHH-HHHH---------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHH-HHHHHHhccccCCCCEEEEeCCcCCCCHHHHHH-HHHH---------
Confidence 677777777643 59999999999996655 3334444333334457777664211 122222 1111
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATL 202 (2355)
+.... ....+.++||||||+|-.. ....+.++++.-+....+|++|..+
T Consensus 71 -----------------------------~~~~~-~~~~~KviIId~ad~l~~~-aqNaLLK~LEEPp~~t~fiLit~~~ 119 (198)
T d2gnoa2 71 -----------------------------LNYSP-ELYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNTRRW 119 (198)
T ss_dssp -----------------------------HTSCC-SSSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred -----------------------------HhhCc-ccCCCEEEEEeCccccchh-hhhHHHHHHhCCCCCceeeeccCCh
Confidence 11111 1356779999999998643 3456667777666667777766654
Q ss_pred C
Q psy8497 203 S 203 (2355)
Q Consensus 203 S 203 (2355)
.
T Consensus 120 ~ 120 (198)
T d2gnoa2 120 H 120 (198)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.05 E-value=0.062 Score=57.06 Aligned_cols=131 Identities=17% Similarity=0.220 Sum_probs=74.6
Q ss_pred CCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cHHH-HHHHHHHHHHHhcccCCcEEEEEECCccccC
Q psy8497 58 GYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TREI-AVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133 (2355)
Q Consensus 58 GRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TRAL-AqQ~anwLREFgk~APgLrVVvytGGkq~rk 133 (2355)
.++ +++++|||+|||.+..-.+. ++.. .+.++++|+. .|.- +.|+..+.+.+. +.+..
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~-~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~-----v~~~~--------- 70 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLAL-YYKG---KGRRPLLVAADTQRPAAREQLRLLGEKVG-----VPVLE--------- 70 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH-HHHH---TTCCEEEEECCSSCHHHHHHHHHHHHHHT-----CCEEE---------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHH---CCCcEEEEecccccchHHHHHHHHHHhcC-----Ccccc---------
Confidence 345 45699999999966554433 3432 2455666663 3333 355555555442 22211
Q ss_pred CCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCceEEEEEeccChhHHHHH
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDNLATL 210 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~LppnrQILLLSATLS~EILElL 210 (2355)
+.+++.+...... ........++|+||=+=+..... ....+..+.....+..-++.++|+...+....+
T Consensus 71 --------~~~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~ 142 (207)
T d1ls1a2 71 --------VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 142 (207)
T ss_dssp --------CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH
T ss_pred --------ccccchhhHHHHHHHHHHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHH
Confidence 1222212211110 11124567799999988765332 456666677777777778889999888877777
Q ss_pred HHhc
Q psy8497 211 QKYM 214 (2355)
Q Consensus 211 kKfL 214 (2355)
..+.
T Consensus 143 ~~f~ 146 (207)
T d1ls1a2 143 RAFD 146 (207)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.06 Score=57.60 Aligned_cols=128 Identities=17% Similarity=0.213 Sum_probs=69.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++|||+|||.+..-.+ .++.. .+.++.+|+- .| .-+.|+..+.+.+ ++.+..
T Consensus 12 i~lvGptGvGKTTTiAKLA-~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l-----~v~~~~------------- 69 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLA-RQFEQ---QGKSVMLAAGDTFRAAAVEQLQVWGQRN-----NIPVIA------------- 69 (211)
T ss_dssp EEEECCTTSCHHHHHHHHH-HHHHT---TTCCEEEECCCTTCHHHHHHHHHHHHHT-----TCCEEC-------------
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH---CCCcEEEEecccccccchhhhhhhhhhc-----CCcccc-------------
Confidence 5579999999996655443 34442 3455666653 23 3345555555544 222211
Q ss_pred CcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhccc-ChHHHHHHHHHhCC------CCceEEEEEeccChhHHH
Q psy8497 138 VQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLP------PMKQMLVVSATYSHDNLA 208 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~Lp------pnrQILLLSATLS~EILE 208 (2355)
+-+++.+...+.. .......+++|+||=+=++... .....+..+.+.+. +...++.++|+.......
T Consensus 70 ----~~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~ 145 (211)
T d2qy9a2 70 ----QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS 145 (211)
T ss_dssp ----CSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHH
T ss_pred ----cccCCCHHHHHHHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHH
Confidence 1111112222211 1112356789999998765432 23344555554442 445678899999887776
Q ss_pred HHHHhc
Q psy8497 209 TLQKYM 214 (2355)
Q Consensus 209 lLkKfL 214 (2355)
.+..+.
T Consensus 146 ~~~~~~ 151 (211)
T d2qy9a2 146 QAKLFH 151 (211)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 666543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.46 E-value=0.072 Score=56.85 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=67.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc---cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP---TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP---TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++|||+|||.+..-.+ .++.. .+.++.+|+- ...-+.|+..+.+.+. +.+..
T Consensus 15 i~lvGptGvGKTTTiAKLA-~~~~~---~g~kV~lit~Dt~R~ga~eQL~~~a~~l~-----v~~~~------------- 72 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLA-YFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIG-----VPVYG------------- 72 (211)
T ss_dssp EEEECSCCC----HHHHHH-HHHHH---TTCCEEEEECCCSSHHHHHHHHHHHHHHT-----CCEEC-------------
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH---CCCceEEEEeeccccchhHHHHHhccccC-----cceee-------------
Confidence 5568999999996654443 34442 2344555543 3344455555555553 22111
Q ss_pred CcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccC---hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHH
Q psy8497 138 VQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTG---FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~G---F~SrLeeILs~LppnrQILLLSATLS~EILElLkK 212 (2355)
+.+++.+...+.. ........++|+||=+=+..... ....+..+.....+..-++.++|+...+....+..
T Consensus 73 ----~~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~ 148 (211)
T d1j8yf2 73 ----EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASK 148 (211)
T ss_dssp ----CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHH
T ss_pred ----cccchhhhHHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhh
Confidence 1111112222211 11124567899999886532221 23556667777777777888999998877766655
Q ss_pred hc
Q psy8497 213 YM 214 (2355)
Q Consensus 213 fL 214 (2355)
+.
T Consensus 149 ~~ 150 (211)
T d1j8yf2 149 FN 150 (211)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=93.99 E-value=0.054 Score=54.38 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=51.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
-++.+||.+||| +.++-.+..+. ..+.+++++-|...- .... .+ ..+.......+
T Consensus 5 ~~i~GpMfsGKT-teLi~~~~~~~---~~~~kv~~ikp~~D~---------R~~~-----~i-------~s~~g~~~~~~ 59 (139)
T d2b8ta1 5 EFITGPMFAGKT-AELIRRLHRLE---YADVKYLVFKPKIDT---------RSIR-----NI-------QSRTGTSLPSV 59 (139)
T ss_dssp EEEECSTTSCHH-HHHHHHHHHHH---HTTCCEEEEEECCCG---------GGCS-----SC-------CCCCCCSSCCE
T ss_pred EEEEccccCHHH-HHHHHHHHHHH---HCCCcEEEEEEcccc---------cccc-----eE-------EcccCceeeeE
Confidence 378899999999 44545554444 346789999997432 0100 01 11111222345
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
.+.+...+...+..... ...+++|.|||+|-+.
T Consensus 60 ~~~~~~~~~~~~~~~~~-~~~~dvI~IDE~QFf~ 92 (139)
T d2b8ta1 60 EVESAPEILNYIMSNSF-NDETKVIGIDEVQFFD 92 (139)
T ss_dssp EESSTHHHHHHHHSTTS-CTTCCEEEECSGGGSC
T ss_pred EeccchhhHHHHHhhcc-ccCcCEEEechhhhcc
Confidence 66665555555543332 3578899999999764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.77 E-value=0.11 Score=55.26 Aligned_cols=128 Identities=16% Similarity=0.267 Sum_probs=67.3
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++|||+|||.+..-.+ .++.. .+.++.+|+- .| .-++|+..+.+.+. +.+. ......
T Consensus 9 i~lvGptGvGKTTTiaKLA-~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~-----i~~~--~~~~~~------ 71 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLG-RYYQN---LGKKVMFCAGDTFRAAGGTQLSEWGKRLS-----IPVI--QGPEGT------ 71 (207)
T ss_dssp EEEECSTTSSHHHHHHHHH-HHHHT---TTCCEEEECCCCSSTTHHHHHHHHHHHHT-----CCEE--CCCTTC------
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH---CCCcEEEEEeccccccchhhHhhcccccC-----ceEE--eccCCc------
Confidence 6779999999996655433 34442 2455666653 23 44466555555553 2211 111100
Q ss_pred CcEEEECHHH-HHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhC------CCCceEEEEEeccChhHHHH
Q psy8497 138 VQIVVGSPGR-IKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQL------PPMKQMLVVSATYSHDNLAT 209 (2355)
Q Consensus 138 ~DILVTTPEr-LLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~L------ppnrQILLLSATLS~EILEl 209 (2355)
.+.. +.+... .......++|+||=+=++.... ....+..+.... .+..-+|.++||...+....
T Consensus 72 ------d~~~~~~~~~~--~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~ 143 (207)
T d1okkd2 72 ------DPAALAYDAVQ--AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ 143 (207)
T ss_dssp ------CHHHHHHHHHH--HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH
T ss_pred ------cHHHHHHHHHH--HHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHH
Confidence 0111 111111 1123456899999988765332 223333333322 34556788999999877766
Q ss_pred HHHh
Q psy8497 210 LQKY 213 (2355)
Q Consensus 210 LkKf 213 (2355)
+..+
T Consensus 144 ~~~~ 147 (207)
T d1okkd2 144 AKKF 147 (207)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.29 E-value=0.11 Score=57.24 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=66.9
Q ss_pred CeEEEEEcccccHHHHHHHHH----hcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc-cccCCCCccEEEEe
Q psy8497 266 NQCVIFSNYQLRPEVICENLA----NANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA-RGIDAANVDLVINL 340 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLr----ErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG-EGLDLPaVDTVIIy 340 (2355)
.++++.+++.-.+......+. ..++.+..+||+++..+|..++..+.+|+++|||+|.++- ..+.+.++.+||+-
T Consensus 133 ~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~LglviiD 212 (264)
T d1gm5a3 133 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 212 (264)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred cceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCCCccccceeeec
Confidence 589999999888876555554 4578999999999999999999999999999999997664 46777788888876
Q ss_pred cCCCCHhHHHHHhh
Q psy8497 341 EIPHDAATYLHRMG 354 (2355)
Q Consensus 341 DSP~SPqSYIQRIG 354 (2355)
.... -.+.||..
T Consensus 213 EqH~--fgv~Qr~~ 224 (264)
T d1gm5a3 213 EQHR--FGVKQREA 224 (264)
T ss_dssp SCCC--C-----CC
T ss_pred cccc--cchhhHHH
Confidence 6552 24566653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.99 E-value=0.16 Score=54.20 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=66.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc-c-cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA-P-TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV-P-TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++|||+|||.+..-.+ .++.. .+.++.+|+ - .| .-++|+..+.+.+. +.+. ......
T Consensus 14 i~lvGptGvGKTTTiAKLA-a~~~~---~~~kV~lit~Dt~R~gA~eQL~~~a~~l~-----i~~~--~~~~~~------ 76 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLA-KMFVD---EGKSVVLAAADTFRAAAIEQLKIWGERVG-----ATVI--SHSEGA------ 76 (213)
T ss_dssp EEEECCTTSSHHHHHHHHH-HHHHH---TTCCEEEEEECTTCHHHHHHHHHHHHHHT-----CEEE--CCSTTC------
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH---CCCceEEEeecccccchhHHHHHHhhhcC-----cccc--ccCCCC------
Confidence 5679999999996655443 34442 234455544 3 33 33355555555442 2221 111110
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCC------CCceEEEEEeccChhHHHHH
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLP------PMKQMLVVSATYSHDNLATL 210 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lp------pnrQILLLSATLS~EILElL 210 (2355)
-+..+..... .......+++|+||=+=+..... ....+..+..... +...++.++||........+
T Consensus 77 ------d~~~~~~~~~-~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~ 149 (213)
T d1vmaa2 77 ------DPAAVAFDAV-AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA 149 (213)
T ss_dssp ------CHHHHHHHHH-HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH
T ss_pred ------cHHHHHHHHH-HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhh
Confidence 0111111110 11123567899999887654322 2344444444432 34567889999887777666
Q ss_pred HHhc
Q psy8497 211 QKYM 214 (2355)
Q Consensus 211 kKfL 214 (2355)
..+.
T Consensus 150 ~~~~ 153 (213)
T d1vmaa2 150 KIFK 153 (213)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 5543
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.93 E-value=0.066 Score=54.02 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=26.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
-||.+||.+||| ..++-.+..+. ..+.++|++-|...
T Consensus 10 ~lI~GpMfSGKT-teLi~~~~~~~---~~g~~vl~i~~~~D 46 (141)
T d1xx6a1 10 EVIVGPMYSGKS-EELIRRIRRAK---IAKQKIQVFKPEID 46 (141)
T ss_dssp EEEECSTTSSHH-HHHHHHHHHHH---HTTCCEEEEEEC--
T ss_pred EEEEeccccHHH-HHHHHHHHHhh---hcCCcEEEEEeccc
Confidence 478999999999 54555555444 24678999999754
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.038 Score=55.05 Aligned_cols=36 Identities=11% Similarity=0.245 Sum_probs=26.2
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
-+|.+||.+||| ..++-.+.... ..+.+++++-|..
T Consensus 5 ~li~GpMfsGKT-t~Li~~~~~~~---~~g~~v~~ikp~~ 40 (133)
T d1xbta1 5 QVILGPMFSGKS-TELMRRVRRFQ---IAQYKCLVIKYAK 40 (133)
T ss_dssp EEEECCTTSCHH-HHHHHHHHHHH---TTTCCEEEEEETT
T ss_pred EEEEecccCHHH-HHHHHHHHHHH---HcCCcEEEEeccc
Confidence 478899999999 45555555444 3467799998864
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.72 E-value=0.28 Score=51.42 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=25.0
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
....+|||||+|.|... ....+..+++..+....+|++|-
T Consensus 114 ~~~kviiIde~d~l~~~-~q~~Llk~lE~~~~~~~~il~tn 153 (239)
T d1njfa_ 114 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATT 153 (239)
T ss_dssp SSSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEES
T ss_pred CCCEEEEEECcccCCHH-HHHHHHHHHhcCCCCeEEEEEcC
Confidence 45679999999997533 23455666665555555555443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.64 E-value=0.19 Score=52.78 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=56.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
.++|.+|+|+|||.... ++...+.. .+..+++ ++...+..+....+..-
T Consensus 38 ~l~l~G~~G~GKTHLl~-A~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~-------------------------- 86 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHLLQ-AAGNEAKK---RGYRVIY-SSADDFAQAMVEHLKKG-------------------------- 86 (213)
T ss_dssp SEEEECSSSSSHHHHHH-HHHHHHHH---TTCCEEE-EEHHHHHHHHHHHHHHT--------------------------
T ss_pred cEEEECCCCCcHHHHHH-HHHHHhcc---CccceEE-echHHHHHHHHHHHHcc--------------------------
Confidence 38999999999996654 44444442 2344444 45555544444433221
Q ss_pred EEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCC-CCceEEEEEeccC
Q psy8497 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLP-PMKQMLVVSATYS 203 (2355)
Q Consensus 140 ILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lp-pnrQILLLSATLS 203 (2355)
....+... +...++||||++|.+.... +...+..++..+. ...++|+.|..++
T Consensus 87 ----~~~~~~~~-------~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p 141 (213)
T d1l8qa2 87 ----TINEFRNM-------YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 141 (213)
T ss_dssp ----CHHHHHHH-------HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred ----chhhHHHH-------HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcc
Confidence 01112222 3467799999999987443 3344555555543 4556665555443
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=92.46 E-value=0.19 Score=54.33 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=68.4
Q ss_pred CCeEEEEEcccccHHHHHHHHHh----cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc-cccCCCCccEEEE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLAN----ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA-RGIDAANVDLVIN 339 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrE----rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG-EGLDLPaVDTVII 339 (2355)
+.+++|.+++.-.+..+...+.+ .++.+..+||.++..+|..++..+.+|.++|||+|.++- ..+.+++.-+||+
T Consensus 104 g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 104 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhccCCccccccceee
Confidence 46999999999999888888875 467899999999999999999999999999999998655 4688888888887
Q ss_pred ecCC
Q psy8497 340 LEIP 343 (2355)
Q Consensus 340 yDSP 343 (2355)
-...
T Consensus 184 DEeH 187 (233)
T d2eyqa3 184 DEEH 187 (233)
T ss_dssp ESGG
T ss_pred echh
Confidence 6655
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.42 E-value=0.1 Score=53.33 Aligned_cols=43 Identities=12% Similarity=0.246 Sum_probs=25.7
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATL 202 (2355)
.....+|||||+|.+.... ...+..++........+++++...
T Consensus 106 ~~~~~viiiDe~d~l~~~~-~~~l~~~~~~~~~~~~~i~~~~~~ 148 (237)
T d1sxjd2 106 CPPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICNYV 148 (237)
T ss_dssp CCSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ccCceEEEEecccccCHHH-HHHHhhcccccccccccccccccc
Confidence 3445689999999887543 334445555555455555544443
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.12 E-value=0.2 Score=51.56 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=26.6
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
..+.+|||||+|.|... ....+..++...+....+|+++..
T Consensus 130 ~~~~iiiide~d~l~~~-~~~~l~~~~e~~~~~~~~Il~tn~ 170 (252)
T d1sxje2 130 HRYKCVIINEANSLTKD-AQAALRRTMEKYSKNIRLIMVCDS 170 (252)
T ss_dssp -CCEEEEEECTTSSCHH-HHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCceEEEeccccccccc-cchhhhcccccccccccceeeecc
Confidence 44668999999987544 345566677766656666655433
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=91.59 E-value=0.14 Score=59.39 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=48.9
Q ss_pred CCcHHHHHHHHHHHc----C-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 43 KESPIQMAAFPYVLN----G-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----G-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
.|.--|-+||..|.. + +..+|.+-||+|||++.. .++..+ +.++|||+|+..+|.|+++.++.|+.
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~------~rp~LVVt~n~~~A~qL~~dL~~~l~ 81 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV------NKPTLVIAHNKTLAGQLYSELKEFFP 81 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH------TCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh------CCCEEEEeCCHHHHHHHHHHHHHHcC
Confidence 455557666666554 3 458899999999995533 333332 45799999999999999999999863
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.46 E-value=0.57 Score=50.22 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=22.1
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
+.+|+.+|.|+|||.++- ++...+ +.+++.|-+.
T Consensus 43 ~giLl~GppGtGKT~la~-aia~~~------~~~~~~i~~~ 76 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLAR-AVAGEA------RVPFITASGS 76 (247)
T ss_dssp SEEEEECCTTSSHHHHHH-HHHHHT------TCCEEEEEHH
T ss_pred ceEEEecCCCCChhHHHH-HHHHHc------CCCEEEEEhH
Confidence 459999999999996654 332221 3456666554
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.02 E-value=0.47 Score=48.37 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=25.7
Q ss_pred cCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 158 NMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 158 dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
......+|||||+|.+.... ...+..++........+++++
T Consensus 96 ~~~~~kiiiiDe~d~~~~~~-~~~Ll~~le~~~~~~~~~~~~ 136 (227)
T d1sxjc2 96 FSKGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 136 (227)
T ss_dssp SSCSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred cCCCeEEEEEeccccchhhH-HHHHHHHhhhcccceeecccc
Confidence 34556699999999876443 345556666655555444444
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.80 E-value=0.6 Score=47.80 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=23.8
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
.....+|||||+|.+.... ...+..++........+|+.+.
T Consensus 107 ~~~~~iilide~d~~~~~~-~~~ll~~l~~~~~~~~~i~~~n 147 (231)
T d1iqpa2 107 GASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSCN 147 (231)
T ss_dssp GCSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCceEEeehhhhhcchhH-HHHHhhhcccCCcceEEEeccC
Confidence 4456789999999876443 2334445554444444444433
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.58 E-value=0.26 Score=50.60 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=28.0
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
.....+||+||+|.+.... ...+...+...+....+++++....
T Consensus 99 ~~~~kviiiDe~d~~~~~~-~~~ll~~~e~~~~~~~~i~~~~~~~ 142 (224)
T d1sxjb2 99 PGKHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACNQSN 142 (224)
T ss_dssp TTCCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CcceEEEEEecccccchhH-HHHHhhhccccccceeeeeccCchh
Confidence 3456799999999887542 3344455555555666666665543
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.05 E-value=0.74 Score=49.11 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=14.4
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.+||.+|+|+|||..+-
T Consensus 42 ~vLL~GppGtGKT~la~ 58 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAA 58 (246)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999996543
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.63 E-value=0.92 Score=45.94 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.5
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
.+++|.||+|+|||.++ -.++..+.
T Consensus 44 ~~lll~GppGtGKT~l~-~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTL-RKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHHT
T ss_pred CceEEECCCCCCHHHHH-HHHHHHHh
Confidence 46999999999999554 34555554
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.61 E-value=1.9 Score=45.48 Aligned_cols=111 Identities=10% Similarity=0.149 Sum_probs=62.0
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcC----CCCCeEEEEcccHHHH------HHHHHHHHHHhccc--CCcEEEEEE
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLP----VQQPQTIILAPTREIA------VQITDVVRSVGAHV--KNLHVDYFI 126 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr----~qggRVLILVPTRALA------qQ~anwLREFgk~A--PgLrVVvyt 126 (2355)
.|+||++|.|.|||.+.- .+...+.... -.+.+ +|.+-...|+ -||.+.++.+...+ ..-+++++.
T Consensus 44 ~n~lLvG~pGVGKTalv~-~LA~ri~~~~vp~~L~~~~-i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfI 121 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVE-GLAQRIINGEVPEGLKGRR-VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp CEEEEECCTTSCHHHHHH-HHHHHHHHTCSCGGGTTCE-EEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCeEEEecCCcccHHHHH-HHHHHHHhCCCCHHHcCce-EEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEc
Confidence 579999999999996554 3333443221 12344 5544444554 36666666544332 122455555
Q ss_pred CCccccCC-------C------------CCCc-EEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 127 GGTQVERP-------K------------RPVQ-IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 127 GGkq~rkq-------i------------rq~D-ILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
.+...-.. . .... |.-|||+.+..++....--.+.|..|.|+|-.
T Consensus 122 Deih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~ 186 (195)
T d1jbka_ 122 DELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp ETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred chHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCC
Confidence 44322110 0 0123 55678888877766655445677888888864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=85.05 E-value=1.7 Score=46.81 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.2
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|.|+|||+++-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAK 63 (256)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEeeCCCCCCccHHHH
Confidence 569999999999996644
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=85.04 E-value=0.57 Score=53.39 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHcCCc--EEEEccCCchHHHHHHHHHHHHHH
Q psy8497 44 ESPIQMAAFPYVLNGYD--AIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 44 LRPYQeEALn~LLSGRN--VILAAPTGSGKTLVALIAILerL~ 84 (2355)
+.+.|.+.+..+..... +||++|||+||| +.+.+++..+.
T Consensus 142 ~~~~~~~~l~~l~~~~~GliLvtGpTGSGKS-TTl~~~l~~~~ 183 (401)
T d1p9ra_ 142 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKS-TTLYAGLQELN 183 (401)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHH-HHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHhhhhceEEEEcCCCCCcc-HHHHHHhhhhc
Confidence 46888888888887654 888999999999 44556776654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.61 E-value=1.2 Score=47.53 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=21.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
+.+||.+|.|+|||+.+- ++... .+.+++++.+.
T Consensus 39 ~giLL~GppGtGKT~l~~-ala~~------~~~~~~~i~~~ 72 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIAR-AVANE------TGAFFFLINGP 72 (258)
T ss_dssp CEEEEECCTTSSHHHHHH-HHHHH------TTCEEEEECHH
T ss_pred ceeEEecCCCCCchHHHH-HHHHH------hCCeEEEEEch
Confidence 569999999999996533 22222 23456665544
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=83.12 E-value=0.79 Score=51.06 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=40.3
Q ss_pred HHHHHHCCCCCC---cHHHHHHHHHHH-cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 33 RQGLQENGFVKE---SPIQMAAFPYVL-NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 33 LK~Lqa~GF~eL---RPYQeEALn~LL-SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
+..+...|+..+ .+-+...+..+. .++++||+++||+||| .++-+++.. .....++++|--+.+|
T Consensus 137 l~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKT-T~l~al~~~----i~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 137 HSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKT-TYIKSIMEF----IPKEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHH-HHHHHHGGG----SCTTCCEEEEESSCCC
T ss_pred hHHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccch-HHHHHHhhh----cccccceeeccchhhh
Confidence 344555555432 344555555544 4688999999999999 434444432 2346677777666665
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=81.87 E-value=0.46 Score=46.09 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=17.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ 84 (2355)
.++|.+|.|+|||.. +-.++..+.
T Consensus 2 ki~I~G~~G~GKSTL-l~~i~~~l~ 25 (178)
T d1ye8a1 2 KIIITGEPGVGKTTL-VKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHG
T ss_pred EEEEECCCCcHHHHH-HHHHHhcCC
Confidence 479999999999954 445555444
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.05 E-value=1.4 Score=48.11 Aligned_cols=121 Identities=9% Similarity=0.071 Sum_probs=65.0
Q ss_pred HHHHHHc--CCcEEEEccCCchHHHHHHHHHHHHHHhcC----CCCCeEEEEcccHHHH-----HHHHHHHHHHhcccC-
Q psy8497 51 AFPYVLN--GYDAIVQSKSGTGKSIVFVVAALNKLIKLP----VQQPQTIILAPTREIA-----VQITDVVRSVGAHVK- 118 (2355)
Q Consensus 51 ALn~LLS--GRNVILAAPTGSGKTLVALIAILerL~ekr----~qggRVLILVPTRALA-----qQ~anwLREFgk~AP- 118 (2355)
.+..|.+ ..|+||++|.|.|||.+.- .+...+.... -.+..++.|-+.+-++ -+|.++++.+...+.
T Consensus 30 l~~iL~r~~k~n~lLVG~~GvGKTalv~-~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~ 108 (268)
T d1r6bx2 30 AIQVLCRRRKNNPLLVGESGVGKTAIAE-GLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ 108 (268)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH-HHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS
T ss_pred HHHHHhcCccCCcEEECCCCCcHHHHHH-HHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhhc
Confidence 3344443 3579999999999995544 3444444321 1244566666655443 344444444433221
Q ss_pred CcEEEEEECCccccC------------------C--CCCCc-EEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 119 NLHVDYFIGGTQVER------------------P--KRPVQ-IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 119 gLrVVvytGGkq~rk------------------q--irq~D-ILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
.-+++++..+...-. . ..... |.-|||+.+..++....-....|..|.|+|-..
T Consensus 109 ~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~ 183 (268)
T d1r6bx2 109 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSI 183 (268)
T ss_dssp SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCH
T ss_pred cCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCH
Confidence 123555554322110 0 01133 556788888766665554567788999999874
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=80.06 E-value=1.4 Score=50.59 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=48.3
Q ss_pred CCcHHHHHHHHHHH----cCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 43 KESPIQMAAFPYVL----NGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 43 eLRPYQeEALn~LL----SGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
+|+.-|-++|..|. .+.. +.|.+-+|++||++.. .++..+ +.++|||||+...|.++.+.+..|..
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A-~l~~~~------~rp~LvVt~~~~~A~~l~~dL~~~l~ 78 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL------GRPALVLAPNKILAAQLAAEFRELFP 78 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHHHHh------CCCEEEEeCCHHHHHHHHHHHHHhcC
Confidence 56666766666654 3444 7889999999995432 333322 35799999999999999999999863
|