Psyllid ID: psy8570

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MYILCFYRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLDAS
Secondary Structure (PSIPRED)
ccEEEEccccccEEEEEEEcccccccHHHHHHHHHcccccEEcccccccccccccccccEEEEccccccHHHHHHHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHccccEEEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccccEEEEEccccHHHHHHHHHHHHHccccEEEcccccccccccccccHHEcccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHcccEEEEEccc
Coil and Loop (DISEMBL)
MYILCFYRTGFVVCvdaflgpvcdyviapvarysgvwgipvltagglvanfelkfeyptltrmmgsfSLVGQAVQSILKNFNWTVAGFMFnnygqttgkgnsncwFTIASVYKIItspsgsndmklesfdeetvtpEKLKEQLIAITKRARIIKSLDAS
Flexible Loop (DISEMBL)
MYILCFYRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITspsgsndmklesfdeetvtpekLKEQLIAITKRARIIKSLDAS
Low Complexity Region (SEG)
MYILCFYRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLDAS
Disordered region (IsUnstruct)
*YILCFYRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIIT**************************LIAITKR**********
Disordered Region (DISOPRED)
*YILCFYRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLDAS
Disordered Region (DISEMBL)
MYILCFYRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLDAS
Disordered Region (DISPRO)
MYILCFYRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYILCFYRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLDAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
P41740	535	Atrial natriuretic peptid	yes	N/A	0.591	0.175	0.35	4e-14
P17342	541	Atrial natriuretic peptid	yes	N/A	0.685	0.201	0.333	4e-14
P70180	536	Atrial natriuretic peptid	yes	N/A	0.591	0.175	0.35	5e-14
P10730	537	Atrial natriuretic peptid	yes	N/A	0.591	0.175	0.36	1e-13
P16067	1047	Atrial natriuretic peptid	no	N/A	0.735	0.111	0.328	3e-09
P16066	1061	Atrial natriuretic peptid	no	N/A	0.578	0.086	0.326	3e-09
Q6VVW5	1047	Atrial natriuretic peptid	no	N/A	0.735	0.111	0.328	4e-09
P46197	1047	Atrial natriuretic peptid	no	N/A	0.735	0.111	0.328	6e-09
P20594	1047	Atrial natriuretic peptid	no	N/A	0.735	0.111	0.32	8e-09
P55202	1050	Atrial natriuretic peptid	N/A	N/A	0.471	0.071	0.373	9e-09

>sp|P41740|ANPRC_RAT Atrial natriuretic peptide receptor 3 OS=Rattus norvegicus GN=Npr3 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 63/100 (63%), Gaps = 6/100 (6%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
           D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ +
Sbjct: 124 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPAYAKMGEMM 183

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
            ++ ++ +W+ A  ++++      K   NC+FT+  V+++
Sbjct: 184 LALFRHHHWSRAALLYSD-----DKLERNCYFTLEGVHEV 218

Receptor for the natriuretic peptide hormones, binding with similar affinities atrial natriuretic peptide NPPA/ANP, brain natriuretic peptide NPPB/BNP, and C-type natriuretic peptide NPPC/CNP. May function as a clearance receptor for NPPA, NPPB and NPPC, regulating their local concentrations and effects. May regulate diuresis, blood pressure and skeletal development. Does not have guanylate cyclase activity.
Rattus norvegicus (taxid: 10116)

>sp|P17342|ANPRC_HUMAN Atrial natriuretic peptide receptor 3 OS=Homo sapiens GN=NPR3 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 8/117 (6%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
           D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ +
Sbjct: 129 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMM 188

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE 131
            ++ ++ +W+ A  ++++      K   NC+FT+  V+++           + SFDE
Sbjct: 189 LALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEVFQEEGLHT--SIYSFDE 238

Receptor for the natriuretic peptide hormones, binding with similar affinities atrial natriuretic peptide NPPA/ANP, brain natriuretic peptide NPPB/BNP, and C-type natriuretic peptide NPPC/CNP. May function as a clearance receptor for NPPA, NPPB and NPPC, regulating their local concentrations and effects. May regulate diuresis, blood pressure and skeletal development. Does not have guanylate cyclase activity.

Homo sapiens (taxid: 9606)

>sp|P70180|ANPRC_MOUSE Atrial natriuretic peptide receptor 3 OS=Mus musculus GN=Npr3 PE=1 SV=3

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 63/100 (63%), Gaps = 6/100 (6%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
           D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ +
Sbjct: 124 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPAYAKMGEMM 183

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
            ++ ++ +W+ A  ++++      K   NC+FT+  V+++
Sbjct: 184 LALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEV 218

Receptor for the natriuretic peptide hormones, binding with similar affinities atrial natriuretic peptide NPPA/ANP, brain natriuretic peptide NPPB/BNP, and C-type natriuretic peptide NPPC/CNP. May function as a clearance receptor for NPPA, NPPB and NPPC, regulating their local concentrations and effects. May regulate diuresis, blood pressure and skeletal development. Does not have guanylate cyclase activity.

Mus musculus (taxid: 10090)

>sp|P10730|ANPRC_BOVIN Atrial natriuretic peptide receptor 3 OS=Bos taurus GN=NPR3 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 6/100 (6%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
           D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  S++ +G+ +
Sbjct: 125 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPSYAKMGEMM 184

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
            ++ ++  W+ A  ++++      K   NC+FT+  V+++
Sbjct: 185 LALFRHHQWSRAVLVYSD-----DKLERNCFFTLEGVHEV 219

Receptor for the natriuretic peptide hormones, binding with similar affinities atrial natriuretic peptide NPPA/ANP, brain natriuretic peptide NPPB/BNP, and C-type natriuretic peptide NPPC/CNP. May function as a clearance receptor for NPPA, NPPB and NPPC, regulating their local concentrations and effects. May regulate diuresis, blood pressure and skeletal development. Does not have guanylate cyclase activity.

Bos taurus (taxid: 9913)

>sp|P16067|ANPRB_RAT Atrial natriuretic peptide receptor 2 OS=Rattus norvegicus GN=Npr2 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 8/125 (6%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQAV 74
           D  LGP C Y  A VAR++  W +P+LTAG + + F  K E Y TL R   S   +G+ V
Sbjct: 94  DLLLGPGCVYPAASVARFASHWHLPLLTAGAVASGFAAKNEHYRTLVRTGPSAPKLGEFV 153

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSN-DMKLESFDEET 133
            ++  +FNWT    +     +T  + +   +FTI  V++ +    GSN  ++ + +  E 
Sbjct: 154 VTLHGHFNWTARAALLYLDARTDDRPH---YFTIEGVFEAL---QGSNLSVQHQVYTREP 207

Query: 134 VTPEK 138
             PE+
Sbjct: 208 GGPEQ 212

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P16066|ANPRA_HUMAN Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 18  FLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSI 77
           FLGP C Y  APV R++  W +P+LTAG     F +K EY   TR   S++ +G  V ++
Sbjct: 113 FLGPGCVYAAAPVGRFTAHWRVPLLTAGAPALGFGVKDEYALTTRAGPSYAKLGDFVAAL 172

Query: 78  LKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVY 112
            +   W     M   Y    G    +C+F +  ++
Sbjct: 173 HRRLGWERQALML--YAYRPGD-EEHCFFLVEGLF 204

Receptor for the atrial natriuretic peptide NPPA/ANP and the brain natriuretic peptide NPPB/BNP which are potent vasoactive hormones playing a key role in cardiovascular homeostasis. Has guanylate cyclase activity upon binding of the ligand.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q6VVW5|ANPRB_MOUSE Atrial natriuretic peptide receptor 2 OS=Mus musculus GN=Npr2 PE=2 SV=2

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 8/125 (6%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQAV 74
           D  LGP C Y  A VAR++  W +P+LTAG + + F  K E Y TL R   S   +G+ V
Sbjct: 94  DLLLGPGCVYPAASVARFASHWRLPLLTAGAVASGFAAKNEHYRTLVRTGPSAPKLGEFV 153

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSN-DMKLESFDEET 133
            ++  +FNWT    +     +T  + +   +FTI  V++ +    GSN  ++ + +  E 
Sbjct: 154 VTLHGHFNWTARAALLYLDARTDDRPH---YFTIEGVFEAL---QGSNLSVQHQVYAREP 207

Query: 134 VTPEK 138
             PE+
Sbjct: 208 GGPEQ 212

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P46197|ANPRB_BOVIN Atrial natriuretic peptide receptor 2 OS=Bos taurus GN=NPR2 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQAV 74
           D  LGP C Y  A VAR++  W +P+LTAG + + F  K E Y TL R   S   +G+ V
Sbjct: 94  DLLLGPGCVYPAASVARFASHWRLPLLTAGAVASGFSAKSEHYRTLVRTGPSAPKLGEFV 153

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSN-DMKLESFDEET 133
             +  +FNWT    +     +T  + +   +FTI  V++ +    GSN  ++ + +  E 
Sbjct: 154 VMLHGHFNWTARAALLYLDARTDDRPH---YFTIEGVFEAL---QGSNLSVQHQVYAREP 207

Query: 134 VTPEK 138
             PE+
Sbjct: 208 GGPEQ 212

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P20594|ANPRB_HUMAN Atrial natriuretic peptide receptor 2 OS=Homo sapiens GN=NPR2 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 8/125 (6%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQAV 74
           D  LGP C Y  A VAR++  W +P+LTAG + + F  K + Y TL R   S   +G+ V
Sbjct: 94  DLLLGPGCVYPAASVARFASHWRLPLLTAGAVASGFSAKNDHYRTLVRTGPSAPKLGEFV 153

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSN-DMKLESFDEET 133
            ++  +FNWT    +     +T  + +   +FTI  V++ +    GSN  ++ + +  E 
Sbjct: 154 VTLHGHFNWTARAALLYLDARTDDRPH---YFTIEGVFEAL---QGSNLSVQHQVYAREP 207

Query: 134 VTPEK 138
             PE+
Sbjct: 208 GGPEQ 212

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P55202|ANPRB_ANGJA Atrial natriuretic peptide receptor 2 OS=Anguilla japonica GN=npr2 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQ 75
           DAF GP C Y +A V R+   W +P++TA      F+ K EY T+ R   S + +G+   
Sbjct: 103 DAFFGPGCVYSVASVGRFVNHWKLPLITAWAPAFGFDSKEEYRTIVRTGLSTTKLGEFAH 162

Query: 76  SILKNFNWTVAGFMF 90
            +  +FNWT   FM 
Sbjct: 163 YLHSHFNWTTRAFML 177

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Anguilla japonica (taxid: 7937)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
307212159	555	Atrial natriuretic peptide receptor A [H	0.836	0.239	0.510	6e-34
383860979	1384	PREDICTED: atrial natriuretic peptide re	0.836	0.096	0.510	7e-34
328783669	1436	PREDICTED: atrial natriuretic peptide re	0.836	0.092	0.503	2e-33
242014720	664	Guanylate cyclase 32E precursor, putativ	0.874	0.209	0.503	4e-33
332029271	867	Atrial natriuretic peptide receptor A [A	0.830	0.152	0.514	5e-33
380016320	1351	PREDICTED: atrial natriuretic peptide re	0.842	0.099	0.5	1e-32
345493253	1322	PREDICTED: atrial natriuretic peptide re	0.836	0.100	0.503	1e-32
322784428	197	hypothetical protein SINV_16198 [Solenop	0.905	0.730	0.462	8e-32
340725323	1453	PREDICTED: atrial natriuretic peptide re	0.830	0.090	0.478	9e-31
328698603	251	PREDICTED: atrial natriuretic peptide re	0.817	0.517	0.532	1e-30

>gi|307212159|gb|EFN88013.1| Atrial natriuretic peptide receptor A [Harpegnathos saltator]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 93/139 (66%), Gaps = 6/139 (4%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEY-PTLTRMMGSFSLVGQAV 74
           DAFLGPVCDYVIAPVARY+GVWGIPVLTAG     F  K EY PTLTRMMGS  LVG+A+
Sbjct: 1   DAFLGPVCDYVIAPVARYAGVWGIPVLTAGAQAEAFRYKGEYFPTLTRMMGSHRLVGEAL 60

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
           + IL+ F W +AG +++N+   +G+GNS C FT+ +V+  +            SF++ET 
Sbjct: 61  RHILRRFGWKIAGLLYHNHPMASGRGNSECHFTLGAVFTALNQTPVH-----RSFNQETT 115

Query: 135 TPEKLKEQLIAITKRARII 153
             E  +  L  ++K ARI+
Sbjct: 116 IAEDYRNLLAFVSKSARIV 134

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860979|ref|XP_003705964.1| PREDICTED: atrial natriuretic peptide receptor 1-like [Megachile rotundata]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 93/139 (66%), Gaps = 6/139 (4%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQAV 74
           DAFLGPVCDYVIAPVARY+GVW IPVLTAG     F  K E YPTLTRMMGS  LVG+A+
Sbjct: 256 DAFLGPVCDYVIAPVARYAGVWSIPVLTAGAQAEAFRYKGEHYPTLTRMMGSHRLVGEAL 315

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
           + ILK F W +AG +++N+   + +GNS C FT+ +VY  +            SF++ET 
Sbjct: 316 RHILKRFGWKIAGLLYHNHAVASSRGNSECHFTLGAVYTALNQTP-----VYRSFNQETT 370

Query: 135 TPEKLKEQLIAITKRARII 153
           + E+ +  L+ + K ARI+
Sbjct: 371 SAEEYRNLLVFLAKSARIV 389

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783669|ref|XP_001121839.2| PREDICTED: atrial natriuretic peptide receptor 1-like [Apis mellifera]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/139 (50%), Positives = 94/139 (67%), Gaps = 6/139 (4%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQAV 74
           DAF GPVCDYVIAPVARY+G+WGIPVLTAG     F  K E YPTLTRMMGS  LVG+A+
Sbjct: 258 DAFFGPVCDYVIAPVARYAGIWGIPVLTAGAQAEAFRYKSEHYPTLTRMMGSHRLVGEAL 317

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
           + IL+ F W +AG +++N+   + +GNS C FT+ +V+  +   S       +SF++ET 
Sbjct: 318 RHILERFGWKIAGLLYHNHAMASSRGNSECHFTLGAVFTALGQTSVH-----KSFNQETT 372

Query: 135 TPEKLKEQLIAITKRARII 153
           T E  ++ L  + K ARI+
Sbjct: 373 TVEDYRDLLNFLAKSARIV 391

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014720|ref|XP_002428033.1| Guanylate cyclase 32E precursor, putative [Pediculus humanus corporis] gi|212512552|gb|EEB15295.1| Guanylate cyclase 32E precursor, putative [Pediculus humanus corporis]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 100/147 (68%), Gaps = 8/147 (5%)

Query: 9   TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSF 67
           T  ++  DAFLGPVCDYVIAPVARYS  WGIPVLTAG     F  K F + TLTRMMGS+
Sbjct: 2   TKEIMATDAFLGPVCDYVIAPVARYSATWGIPVLTAGAQANPFRHKTFNFHTLTRMMGSY 61

Query: 68  SLVGQAVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLE 127
           +LVG+A++ IL+N+ W VAG +++N+G+    GNS C FT+A+VY      S  N+  + 
Sbjct: 62  TLVGEALRHILENYGWKVAGLLYHNHGKEGPLGNSICHFTMAAVY------SALNETPVH 115

Query: 128 -SFDEETVTPEKLKEQLIAITKRARII 153
            SF++ T T  ++KE L  + K +RI+
Sbjct: 116 RSFNQNTFTYNQIKELLQTVAKNSRIV 142

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029271|gb|EGI69254.1| Atrial natriuretic peptide receptor A [Acromyrmex echinatior]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/138 (51%), Positives = 93/138 (67%), Gaps = 6/138 (4%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQAV 74
           +AFLGPVCDYVIAPVARY+GVWGIPVLTAG     F  K + YPTLTRMMGS  LVG+A+
Sbjct: 83  NAFLGPVCDYVIAPVARYAGVWGIPVLTAGAQAEAFRHKGQHYPTLTRMMGSHRLVGEAL 142

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
           + IL++F W + G +F+N+   + KGNS C FT+++VY  +           +SF++ET 
Sbjct: 143 RHILRSFGWKICGLLFHNHEMASSKGNSECHFTLSAVYTALNQTPAH-----KSFNQETA 197

Query: 135 TPEKLKEQLIAITKRARI 152
             ++ K  L  I K ARI
Sbjct: 198 DTDEYKNLLSFIAKSARI 215

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016320|ref|XP_003692135.1| PREDICTED: atrial natriuretic peptide receptor 1-like [Apis florea]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 92/140 (65%), Gaps = 6/140 (4%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQA 73
            DAF GPVCDYVIAPVARY+GVWGIPVLTAG     F  K E YPTLTRMMGS  LVG+A
Sbjct: 328 ADAFFGPVCDYVIAPVARYAGVWGIPVLTAGAQAEAFRYKSEHYPTLTRMMGSHRLVGEA 387

Query: 74  VQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET 133
           ++ IL  F W +AG +++N+   + +GNS C FT+ +V+  +   S       +SF++E 
Sbjct: 388 LRHILVRFGWKIAGLLYHNHAMASSRGNSECHFTLGAVFTALGQTSVH-----KSFNQEM 442

Query: 134 VTPEKLKEQLIAITKRARII 153
            T E  ++ L  + K ARI+
Sbjct: 443 TTVEDYRDLLAFLAKSARIV 462

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493253|ref|XP_001603765.2| PREDICTED: atrial natriuretic peptide receptor 2-like [Nasonia vitripennis]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/139 (50%), Positives = 91/139 (65%), Gaps = 6/139 (4%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQAV 74
           DAFLGPVC+YV+APVARY+G W IPVLTAGG    F  K E YPTLTRMMGS  LVG+A+
Sbjct: 258 DAFLGPVCEYVLAPVARYAGAWDIPVLTAGGQADAFRHKDEHYPTLTRMMGSHRLVGEAL 317

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
           Q IL+ F W VA  +F+N+   + +GNS C FT+ +VY  +   S       +SF++E  
Sbjct: 318 QHILQGFGWKVAALLFHNHAMASSRGNSKCHFTLGAVYTALNQTS-----MYKSFNQEDS 372

Query: 135 TPEKLKEQLIAITKRARII 153
           T    +  L  ++K ARI+
Sbjct: 373 TANDYRNLLTFVSKSARIV 391

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784428|gb|EFZ11399.1| hypothetical protein SINV_16198 [Solenopsis invicta]

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 96/147 (65%), Gaps = 3/147 (2%)

Query: 7   YRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGS 66
           + +   +   AFLGPVC+YVIAPVARY+GVWGIPVLTAG     F  K ++PTLTRMMGS
Sbjct: 42  HESTVTITKHAFLGPVCEYVIAPVARYAGVWGIPVLTAGAQAEAFRFKGDFPTLTRMMGS 101

Query: 67  FSLVGQAVQSILKNFNWTVAGFMFNNYGQTT--GKGNSNCWFTIASVYKIITSPSGSNDM 124
             LV +A++ IL  F W + G + +NY +     KGNS C+F +++V+  I S       
Sbjct: 102 HQLVSEALRHILWRFGWKICGLLLHNYNKANKDKKGNSECYFRLSAVFGAIESKLNYKP- 160

Query: 125 KLESFDEETVTPEKLKEQLIAITKRAR 151
           ++++FD+ET T E+ ++ L  I+K AR
Sbjct: 161 EVKAFDQETTTAEEYRDLLTHISKTAR 187

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725323|ref|XP_003401021.1| PREDICTED: atrial natriuretic peptide receptor 1-like [Bombus terrestris]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 90/140 (64%), Gaps = 8/140 (5%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQAV 74
           DAFLGPVCDY IAPVARY+GVW IPVLTAG     F  K E YPTLTRMMGS  LVG+A+
Sbjct: 260 DAFLGPVCDYAIAPVARYAGVWRIPVLTAGAQAEAFRHKGEHYPTLTRMMGSHRLVGEAL 319

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIIT-SPSGSNDMKLESFDEET 133
           + ILK F W + G +++N+   + +GNS C FT+ +++  +  +P   N      F++E+
Sbjct: 320 KHILKRFEWKIVGLLYHNHEMASSRGNSECHFTLGAIFTALNQTPVHKN------FNQES 373

Query: 134 VTPEKLKEQLIAITKRARII 153
            T E  +  L  + K  RI+
Sbjct: 374 STVEDYRNLLTFLAKSVRIV 393

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328698603|ref|XP_003240681.1| PREDICTED: atrial natriuretic peptide receptor 1-like [Acyrthosiphon pisum]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 91/137 (66%), Gaps = 7/137 (5%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQ 75
           D FLGPVCDYVIAPVARY+GVW IPVLTAGGL  NF  + EYPTLTRMMGS+ LVG A +
Sbjct: 97  DLFLGPVCDYVIAPVARYAGVWKIPVLTAGGLAENFNNREEYPTLTRMMGSYKLVGDAFR 156

Query: 76  SILKNFNWTVAGFMFNNYG-QTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
            IL  F W V G ++ NYG      GNS C+FT+++V+  +    G   M  +SF+ +T 
Sbjct: 157 HILHGFGWNVVGMLYYNYGLNALQMGNSKCYFTLSAVFIAL----GMKPM-YKSFN-DTD 210

Query: 135 TPEKLKEQLIAITKRAR 151
           + E  KE L  ++  AR
Sbjct: 211 SRESFKELLTEMSHNAR 227

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
FB|FBgn0051183	1417	CG31183 [Drosophila melanogast	0.842	0.094	0.368	4.5e-17
ZFIN|ZDB-GENE-060531-91	502	npr3 "natriuretic peptide rece	0.855	0.270	0.292	2.4e-14
UNIPROTKB|P17342	541	NPR3 "Atrial natriuretic pepti	0.685	0.201	0.341	5.9e-14
RGD|3196	535	Npr3 "natriuretic peptide rece	0.591	0.175	0.35	2e-13
UNIPROTKB|F8WG63	536	Npr3 "Atrial natriuretic pepti	0.591	0.175	0.35	2e-13
MGI|MGI:97373	536	Npr3 "natriuretic peptide rece	0.591	0.175	0.35	2.6e-13
UNIPROTKB|E2R6Z0	537	NPR3 "Uncharacterized protein"	0.591	0.175	0.35	3.3e-13
UNIPROTKB|B0JYL2	537	NPR3 "Natriuretic peptide rece	0.591	0.175	0.36	4.3e-13
UNIPROTKB|P10730	537	NPR3 "Atrial natriuretic pepti	0.591	0.175	0.36	4.3e-13
UNIPROTKB|E1C1V5	523	LOC431663 "Uncharacterized pro	0.685	0.208	0.324	8.5e-13

FB|FBgn0051183 CG31183 [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 4.5e-17, P = 4.5e-17
 Identities = 52/141 (36%), Positives = 79/141 (56%)

Query:    15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGS-FSLVGQ 72
             V+A  G  C+YV+AP++RY+ VW +PVLT GG    F  K E Y TLTR+ G+  + +G 
Sbjct:   160 VNAVFGLPCEYVLAPISRYADVWQVPVLTTGGNAKEFNKKSESYSTLTRLKGAQVNNLGN 219

Query:    73 AVQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEE 132
              V++IL +FNWT    ++ N      KGNS C+  +A+++  I   S     +L  FD  
Sbjct:   220 VVRAILNSFNWTRTALIYQNENAKV-KGNSVCFLCLAAIHDTIEEHSV---YQL-GFDTS 274

Query:   133 TVTPEKLKEQLIAITKRARII 153
             T T   +   L  +  ++RI+
Sbjct:   275 TWTKADITRMLKNVAMQSRIV 295

GO:0004383 "guanylate cyclase activity" evidence=ISS;NAS

GO:0016941 "natriuretic peptide receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IKR

GO:0006468 "protein phosphorylation" evidence=IKR

ZFIN|ZDB-GENE-060531-91 npr3 "natriuretic peptide receptor 3" [Danio rerio (taxid:7955)]

 Score = 192 (72.6 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 43/147 (29%), Positives = 77/147 (52%)

Query:    16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKF-EYPTLTRMMGSFSLVGQAV 74
             D  LGPVC+Y  + V R +  W IPV++AG L   F  K  EY  LTR+  ++  + +  
Sbjct:    96 DLVLGPVCEYAASSVTRVASHWNIPVISAGALATGFNSKTPEYSHLTRIAPTYLKMAETF 155

Query:    75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
             Q+I  +F W  A  ++++      K   NC+FT+  V+ +++    S D  + + +EE V
Sbjct:   156 QAIFGHFGWRTAYLIYDD-----DKDERNCYFTMEGVFTVLSEYHISTDFAVLNSNEERV 210

Query:   135 TPEKL-----KEQLIAITKRARIIKSL 156
              P+ +       +++ +  +A I++ L
Sbjct:   211 DPDGIITSVYGSEVVIMCSKADIVRDL 237

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P17342 NPR3 "Atrial natriuretic peptide receptor 3" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 5.9e-14, P = 5.9e-14
 Identities = 40/117 (34%), Positives = 70/117 (59%)

Query:    16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
             D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ +
Sbjct:   129 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMM 188

Query:    75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE 131
              ++ ++ +W+ A  ++++      K   NC+FT+  V+++     G +   + SFDE
Sbjct:   189 LALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEVFQE-EGLHT-SIYSFDE 238

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042562 "hormone binding" evidence=IPI

GO:0001501 "skeletal system development" evidence=ISS

GO:0002158 "osteoclast proliferation" evidence=ISS

GO:0008217 "regulation of blood pressure" evidence=ISS

GO:0035810 "positive regulation of urine volume" evidence=ISS

GO:0033688 "regulation of osteoblast proliferation" evidence=ISS

GO:0016941 "natriuretic peptide receptor activity" evidence=IDA

GO:0051000 "positive regulation of nitric-oxide synthase activity" evidence=ISS

GO:0008528 "G-protein coupled peptide receptor activity" evidence=ISS

GO:0017046 "peptide hormone binding" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=IC

RGD|3196 Npr3 "natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 35/100 (35%), Positives = 63/100 (63%)

Query:    16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
             D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ +
Sbjct:   124 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPAYAKMGEMM 183

Query:    75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
              ++ ++ +W+ A  ++++      K   NC+FT+  V+++
Sbjct:   184 LALFRHHHWSRAALLYSD-----DKLERNCYFTLEGVHEV 218

GO:0001501 "skeletal system development" evidence=ISO;ISS

GO:0002158 "osteoclast proliferation" evidence=ISO;ISS

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=IDA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IMP

GO:0008217 "regulation of blood pressure" evidence=ISO;ISS;IMP

GO:0008528 "G-protein coupled peptide receptor activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016941 "natriuretic peptide receptor activity" evidence=ISO;ISS;IMP;IDA

GO:0017046 "peptide hormone binding" evidence=IDA

GO:0030157 "pancreatic juice secretion" evidence=IMP

GO:0033688 "regulation of osteoblast proliferation" evidence=ISO;ISS

GO:0035810 "positive regulation of urine volume" evidence=ISO;ISS

GO:0042562 "hormone binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IMP

GO:0051000 "positive regulation of nitric-oxide synthase activity" evidence=IDA

UNIPROTKB|F8WG63 Npr3 "Atrial natriuretic peptide receptor 3" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 35/100 (35%), Positives = 63/100 (63%)

Query:    16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
             D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ +
Sbjct:   124 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPAYAKMGEMM 183

Query:    75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
              ++ ++ +W+ A  ++++      K   NC+FT+  V+++
Sbjct:   184 LALFRHHHWSRAALLYSD-----DKLERNCYFTLEGVHEV 218

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:97373 Npr3 "natriuretic peptide receptor 3" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 35/100 (35%), Positives = 63/100 (63%)

Query:    16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
             D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ +
Sbjct:   124 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPAYAKMGEMM 183

Query:    75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
              ++ ++ +W+ A  ++++      K   NC+FT+  V+++
Sbjct:   184 LALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEV 218

GO:0001501 "skeletal system development" evidence=IMP;IDA

GO:0002158 "osteoclast proliferation" evidence=IMP

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=ISO

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0008217 "regulation of blood pressure" evidence=ISO;IMP

GO:0008528 "G-protein coupled peptide receptor activity" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016941 "natriuretic peptide receptor activity" evidence=ISO

GO:0017046 "peptide hormone binding" evidence=ISO

GO:0030157 "pancreatic juice secretion" evidence=ISO

GO:0033688 "regulation of osteoblast proliferation" evidence=IMP

GO:0035810 "positive regulation of urine volume" evidence=IMP

GO:0042562 "hormone binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=ISO

GO:0051000 "positive regulation of nitric-oxide synthase activity" evidence=ISO

UNIPROTKB|E2R6Z0 NPR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 35/100 (35%), Positives = 62/100 (62%)

Query:    16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
             D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ +
Sbjct:   126 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPAYAKMGEMM 185

Query:    75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
              ++ ++  W+ A  ++++      K   NC+FT+  V+++
Sbjct:   186 LALFRHHQWSRAALVYSD-----DKLERNCYFTLEGVHEV 220

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|B0JYL2 NPR3 "Natriuretic peptide receptor C/guanylate cyclase C (Atrionatriuretic peptide receptor C)" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 36/100 (36%), Positives = 62/100 (62%)

Query:    16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
             D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  S++ +G+ +
Sbjct:   125 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPSYAKMGEMM 184

Query:    75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
              ++ ++  W+ A  ++++      K   NC+FT+  V+++
Sbjct:   185 LALFRHHQWSRAVLVYSD-----DKLERNCFFTLEGVHEV 219

GO:0042562 "hormone binding" evidence=IEA

GO:0035810 "positive regulation of urine volume" evidence=IEA

GO:0033688 "regulation of osteoblast proliferation" evidence=IEA

GO:0016941 "natriuretic peptide receptor activity" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0002158 "osteoclast proliferation" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P10730 NPR3 "Atrial natriuretic peptide receptor 3" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 36/100 (36%), Positives = 62/100 (62%)

Query:    16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
             D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  S++ +G+ +
Sbjct:   125 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPSYAKMGEMM 184

Query:    75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
              ++ ++  W+ A  ++++      K   NC+FT+  V+++
Sbjct:   185 LALFRHHQWSRAVLVYSD-----DKLERNCFFTLEGVHEV 219

GO:0016941 "natriuretic peptide receptor activity" evidence=ISS

GO:0033688 "regulation of osteoblast proliferation" evidence=ISS

GO:0035810 "positive regulation of urine volume" evidence=ISS

GO:0008217 "regulation of blood pressure" evidence=ISS

GO:0002158 "osteoclast proliferation" evidence=ISS

GO:0001501 "skeletal system development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C1V5 LOC431663 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 38/117 (32%), Positives = 65/117 (55%)

Query:    16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKF-EYPTLTRMMGSFSLVGQAV 74
             D  LGPVC+Y  APVAR +  W +P+L+AG L A F  K  EY  LTR+  +++ +G+ +
Sbjct:   109 DLLLGPVCEYAAAPVARLAAHWDVPMLSAGALAAGFGAKGGEYSHLTRVAPAYAKMGEML 168

Query:    75 QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE 131
              ++ ++  W+ A  ++++          NC+F +  V+ +    +    M + SFDE
Sbjct:   169 LALFRHHQWSRATLLYSD-----SNPERNCYFAMEGVHVVFQDEAFH--MAVHSFDE 218

GO:0016021 "integral to membrane" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0002158 "osteoclast proliferation" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0016941 "natriuretic peptide receptor activity" evidence=IEA

GO:0033688 "regulation of osteoblast proliferation" evidence=IEA

GO:0035810 "positive regulation of urine volume" evidence=IEA

GO:0042562 "hormone binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	159
cd06373	396	cd06373, PBP1_NPR_like, Ligand binding domain of n	1e-37
cd06352	389	cd06352, PBP1_NPR_GC_like, Ligand-binding domain o	1e-29
pfam01094	343	pfam01094, ANF_receptor, Receptor family ligand bi	9e-19
cd06386	387	cd06386, PBP1_NPR_C_like, Ligand-binding domain of	4e-18
cd06385	405	cd06385, PBP1_NPR_A, Ligand-binding domain of type	5e-14
cd06384	399	cd06384, PBP1_NPR_B, Ligand-binding domain of type	2e-12
cd06269	298	cd06269, PBP1_glutamate_receptors_like, Family C G	2e-09
cd04509	299	cd04509, PBP1_ABC_transporter_GCPR_C_like, Family	2e-08
cd06350	348	cd06350, PBP1_GPCR_family_C_like, Ligand-binding d	3e-05
cd06351	328	cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci	7e-05
cd06372	391	cd06372, PBP1_GC_G_like, Ligand-binding domain of	3e-04
cd06366	350	cd06366, PBP1_GABAb_receptor, Ligand-binding domai	8e-04
cd01391	269	cd01391, Periplasmic_Binding_Protein_Type_1, Type	0.002

>gnl|CDD|107368 cd06373, PBP1_NPR_like, Ligand binding domain of natriuretic peptide receptor (NPR) family

 Score =  132 bits (334), Expect = 1e-37
 Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 7/139 (5%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
            DAFLGP C+Y  APVAR++  W +PVLTAG   A F  K EY TLTR   S++ +G+ V
Sbjct: 74  PDAFLGPGCEYAAAPVARFAAHWNVPVLTAGAPAAGFSDKSEYSTLTRTGPSYTKLGEFV 133

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
            ++ ++FNW+ A  ++++        +  C+FT+  VY        +  +    FDE+  
Sbjct: 134 LALHEHFNWSRAALLYHDDKND----DRPCYFTLEGVY--TVLKEENITVSDFPFDEDK- 186

Query: 135 TPEKLKEQLIAITKRARII 153
             +  KE L  I+K+ R++
Sbjct: 187 ELDDYKELLRDISKKGRVV 205

Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase. Length = 396

>gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors

 Score =  110 bits (278), Expect = 1e-29
 Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 9/139 (6%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           VDAF+GP C Y  APVAR +  W IP+++ G +  +   K EYPTLTR +     +G+AV
Sbjct: 69  VDAFIGPGCPYACAPVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAV 128

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
            ++L+ FNW VA  ++++        + NC+FT+ ++         +  +    F E+  
Sbjct: 129 LALLRWFNWHVAVVVYSD-------DSENCFFTLEALE--AALREFNLTVSHVVFMEDNS 179

Query: 135 TPEKLKEQLIAITKRARII 153
             E L E L  I +R+RII
Sbjct: 180 GAEDLLEILQDIKRRSRII 198

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family. Length = 389

>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region

 Score = 81.0 bits (200), Expect = 9e-19
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           V A +GP C  V   VAR +G +GIP+++ G        K  YPT  R + S S   +A+
Sbjct: 51  VVAVIGPSCSSVAIAVARLAGAFGIPMISYGATSPELSDKTRYPTFARTVPSDSKQARAI 110

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
             ILK+F W     ++++        +      + ++   +     +             
Sbjct: 111 ADILKHFGWKRVAVIYDD--------DDYGEGGLEALEDALREAGLNVVAVASEVIASDD 162

Query: 135 TPEKLKEQLIAITKRARII 153
               L ++L  I  +AR+I
Sbjct: 163 DFTALLKELKDIKSKARVI 181

This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Length = 343

>gnl|CDD|107381 cd06386, PBP1_NPR_C_like, Ligand-binding domain of type C natriuretic peptide receptor

 Score = 79.5 bits (196), Expect = 4e-18
 Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 12/140 (8%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
           D  LGPVC+Y  APVAR +  W IP+++AG L A F  K  EY  LTR+  S+  +G+  
Sbjct: 69  DLILGPVCEYAAAPVARLASHWNIPMISAGALAAGFSHKKSEYSHLTRVAPSYVKMGETF 128

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
            ++ + F+W  A  ++ +  Q       NC+FT+  V+ +         M +  FDE   
Sbjct: 129 SALFERFHWRSALLVYEDDKQ-----ERNCYFTLEGVHHVFQEE--GYHMSIYPFDE--- 178

Query: 135 TPEKLKEQLI-AITKRARII 153
           T +   +++I AI    R++
Sbjct: 179 TKDLDLDEIIRAIQASERVV 198

Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANP>CNP>BNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation. Length = 387

>gnl|CDD|107380 cd06385, PBP1_NPR_A, Ligand-binding domain of type A natriuretic peptide receptor

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 19/152 (12%)

Query: 12  VVCVD--------AFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRM 63
           +V VD        AF+GP CDY  +PVAR++  W +P++TAG     F +K EY T+TR 
Sbjct: 64  LVAVDLKFTHNPWAFIGPGCDYTASPVARFTTHWDVPLVTAGAPALGFGVKDEYATITRT 123

Query: 64  MGSFSLVGQAVQSILKNFNWTV-AGFMFNNYGQTTGKG-NSNCWFTIASVYKIITSPSGS 121
             +   +G+ V  I ++F W   A  ++++      K  +  C+F +  +Y  +      
Sbjct: 124 GPTHKKLGEFVLHIHQHFGWRSHAMLIYSD-----NKVDDRPCYFAMEGLYMEL----KK 174

Query: 122 NDMKLESFDEETVTPEKLKEQLIAITKRARII 153
           N++ +     E          L  I ++ R+I
Sbjct: 175 NNITVVDLVFEEDDLINYTTLLQDIKQKGRVI 206

Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANP>BNP>>CNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure. Length = 405

>gnl|CDD|107379 cd06384, PBP1_NPR_B, Ligand-binding domain of type B natriuretic peptide receptor

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKF-EYPTLTRMMGSFSLVGQAV 74
           D F GP C Y  A VAR++  W +P++TAG     F  K  EY T  R   S + +G+ V
Sbjct: 75  DVFFGPGCVYPTASVARFATHWRLPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFV 134

Query: 75  QSILKNFNWTVAGFM 89
             + ++FNWT    +
Sbjct: 135 NHLHEHFNWTSRAAL 149

Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNP>>ANP>BNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux. Length = 399

>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 22/74 (29%), Positives = 32/74 (43%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           V A +GP        VA   G   IP ++          K ++P+  R + S S   QA+
Sbjct: 72  VVAVIGPSSSSSAEAVASLLGALHIPQISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAI 131

Query: 75  QSILKNFNWTVAGF 88
             +LK+F WT  G 
Sbjct: 132 VDLLKHFGWTWVGL 145

This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G). Length = 298

>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 22/79 (27%), Positives = 35/79 (44%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           VDA +GPV   V   VA  +    IP+++ G        K  YP L R   S     +A+
Sbjct: 68  VDALVGPVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEAL 127

Query: 75  QSILKNFNWTVAGFMFNNY 93
              +K +NW     ++++ 
Sbjct: 128 ADYIKEYNWKKVAILYDDD 146

This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4- isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine-binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus - which is included in this CD - followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type II periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Length = 299

>gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 21/70 (30%), Positives = 35/70 (50%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           V A +GP    V   VA   G++ IP ++ G        K ++P+  R + S +    A+
Sbjct: 92  VVAVIGPGSSSVSMAVAELLGLFKIPQISYGATSPLLSDKLQFPSFFRTVPSDTSQALAI 151

Query: 75  QSILKNFNWT 84
            ++LK+F WT
Sbjct: 152 VALLKHFGWT 161

Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further devided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins. Length = 348

>gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 17/79 (21%), Positives = 31/79 (39%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           V A  GP      + V        IP ++  G       K E  T  ++  S   +  A+
Sbjct: 64  VAAIFGPTSSESASAVQSICDALEIPHISISGGSEGLSDKEESSTTLQLYPSLEDLADAL 123

Query: 75  QSILKNFNWTVAGFMFNNY 93
             +L+ +NWT    ++++ 
Sbjct: 124 LDLLEYYNWTKFAIIYDSD 142

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. On the other hand, non-NMDA receptors have faster kinetics, are weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute to several forms of synaptic plasticity and are suggested to play an important role in the development of synaptic pathways. Length = 328

>gnl|CDD|107367 cd06372, PBP1_GC_G_like, Ligand-binding domain of membrane guanylyl cyclase G

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 7/139 (5%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           + A  GP C          +  W IP+    G  A  + +F Y T  +++     +G+ +
Sbjct: 69  ISALFGPACPEAAEVTGLLASQWNIPMFGFVGQTAKLDNRFLYDTYVKLVPPKQKIGEVL 128

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV 134
           Q  L++F W   G +F       G    + W  +  ++K + +    +     +    + 
Sbjct: 129 QKSLQHFGWKHIG-LFG------GSSRDSSWDEVDELWKAVENQLKFHFNITATVRYSSS 181

Query: 135 TPEKLKEQLIAITKRARII 153
            P+ L+E+L  I+  AR+I
Sbjct: 182 NPDLLQEKLRYISSVARVI 200

This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle. Length = 391

>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVL---TAGGLVANFELKFEYPTLTRMMGSFSLVG 71
           V A +GP C  V   VA  +  W +PVL        +++   + +YP   R   S S   
Sbjct: 67  VVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSS---RLQYPYFFRTTPSDSSQN 123

Query: 72  QAVQSILKNFNWT 84
            A+ ++LK F W 
Sbjct: 124 PAIAALLKKFGWR 136

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350

>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic binding fold superfamily

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           VD  +GP        V   +   GIPV++     A       YP + R+       G+A 
Sbjct: 59  VDGIIGPPSSSSALAVVELAAAAGIPVVSLD---ATAPDLTGYPYVFRVGPDNEQAGEAA 115

Query: 75  QSILKNFNWTVAGFMFNNYG 94
              L    W     ++ + G
Sbjct: 116 AEYLAEKGWKRVALIYGDDG 135

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The core structures of periplasmic binding proteins are classified into two types, and they differ in number and order of beta strands: type 1 has six beta strands, while type 2 has five beta strands per sub-domain. These two structural folds are thought to be distantly related via a common ancestor. Notably, while the N-terminal LIVBP-like domain of iGluRs belongs to the type 1 periplasmic-binding fold protein superfamily, the glutamate-binding domain of the iGluR is structurally similar to the type 2 periplasmic-binding fold. Length = 269

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
cd06386	387	PBP1_NPR_C_like Ligand-binding domain of type C na	99.92
cd06365	469	PBP1_Pheromone_receptor Ligand-binding domain of t	99.91
cd06375	458	PBP1_mGluR_groupII Ligand binding domain of the gr	99.89
cd06385	405	PBP1_NPR_A Ligand-binding domain of type A natriur	99.89
cd06361	403	PBP1_GPC6A_like Ligand-binding domain of the promi	99.88
cd06374	472	PBP1_mGluR_groupI Ligand binding domain of the gro	99.88
cd06376	463	PBP1_mGluR_groupIII Ligand-binding domain of the g	99.87
cd06371	382	PBP1_sensory_GC_DEF_like Ligand-binding domain of	99.87
PF01094	348	ANF_receptor: Receptor family ligand binding regio	99.87
cd06364	510	PBP1_CaSR Ligand-binding domain of the CaSR calciu	99.87
cd06362	452	PBP1_mGluR Ligand binding domain of the metabotrop	99.86
cd06384	399	PBP1_NPR_B Ligand-binding domain of type B natriur	99.86
cd06369	380	PBP1_GC_C_enterotoxin_receptor Ligand-binding doma	99.84
cd06367	362	PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali	99.84
cd06373	396	PBP1_NPR_like Ligand binding domain of natriuretic	99.83
cd06372	391	PBP1_GC_G_like Ligand-binding domain of membrane g	99.83
KOG1056|consensus	878		99.83
cd06370	404	PBP1_Speract_GC_like Ligand-binding domain of memb	99.82
cd06269	298	PBP1_glutamate_receptors_like Family C G-protein c	99.82
cd06383	368	PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine	99.82
cd06363	410	PBP1_Taste_receptor Ligand-binding domain of the T	99.81
cd06350	348	PBP1_GPCR_family_C_like Ligand-binding domain of m	99.81
cd06379	377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	99.78
cd06351	328	PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc	99.78
cd06366	350	PBP1_GABAb_receptor Ligand-binding domain of GABAb	99.77
cd06352	389	PBP1_NPR_GC_like Ligand-binding domain of membrane	99.77
cd06390	364	PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin	99.76
cd06393	384	PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol	99.76
cd06394	333	PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu	99.75
cd06387	372	PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin	99.74
cd06378	362	PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/	99.74
cd06392	400	PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v	99.72
cd06380	382	PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali	99.72
cd06391	400	PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v	99.68
cd06377	382	PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/	99.67
cd06388	371	PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin	99.66
cd06382	327	PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v	99.66
cd06389	370	PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin	99.66
cd06368	324	PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu	99.61
cd06346	312	PBP1_ABC_ligand_binding_like_11 Type I periplasmic	99.57
cd06338	345	PBP1_ABC_ligand_binding_like_5 Type I periplasmic	99.54
cd06342	334	PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind	99.53
cd04509	299	PBP1_ABC_transporter_GCPR_C_like Family C of G-pro	99.52
cd06345	344	PBP1_ABC_ligand_binding_like_10 Type I periplasmic	99.51
cd06381	363	PBP1_iGluR_delta_like N-terminal leucine/isoleucin	99.5
cd06340	347	PBP1_ABC_ligand_binding_like_6 Type I periplasmic	99.45
cd06347	334	PBP1_ABC_ligand_binding_like_12 Type I periplasmic	99.44
KOG1055|consensus	865		99.4
cd06343	362	PBP1_ABC_ligand_binding_like_8 Type I periplasmic	99.32
cd06330	346	PBP1_Arsenic_SBP_like Periplasmic solute-binding d	99.31
cd06335	347	PBP1_ABC_ligand_binding_like_2 Type I periplasmic	99.31
cd06329	342	PBP1_SBP_like_3 Periplasmic solute-binding domain	99.26
cd06336	347	PBP1_ABC_ligand_binding_like_3 Type I periplasmic	99.26
cd06348	344	PBP1_ABC_ligand_binding_like_13 Type I periplasmic	99.25
cd06327	334	PBP1_SBP_like_1 Periplasmic solute-binding domain	99.25
cd06344	332	PBP1_ABC_ligand_binding_like_9 Type I periplasmic	99.24
cd06268	298	PBP1_ABC_transporter_LIVBP_like Periplasmic bindin	99.23
cd06360	336	PBP1_alkylbenzenes_like Type I periplasmic binding	99.19
cd06349	340	PBP1_ABC_ligand_binding_like_14 Type I periplasmic	99.18
PRK15404	369	leucine ABC transporter subunit substrate-binding	99.14
cd06359	333	PBP1_Nba_like Type I periplasmic binding component	99.12
cd06332	333	PBP1_aromatic_compounds_like Type I periplasmic bi	99.09
KOG4440|consensus	993		99.07
KOG1054|consensus	897		99.05
cd06328	333	PBP1_SBP_like_2 Periplasmic solute-binding domain	99.0
cd06326	336	PBP1_STKc_like Type I periplasmic binding domain o	98.98
cd06333	312	PBP1_ABC-type_HAAT_like Type I periplasmic binding	98.96
cd06339	336	PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin	98.93
cd01391	269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	98.9
cd06331	333	PBP1_AmiC_like Type I periplasmic components of am	98.88
cd06358	333	PBP1_NHase Type I periplasmic-binding protein of t	98.87
cd06334	351	PBP1_ABC_ligand_binding_like_1 Type I periplasmic	98.84
TIGR03863	347	PQQ_ABC_bind ABC transporter, substrate binding pr	98.83
COG0683	366	LivK ABC-type branched-chain amino acid transport	98.82
PF13458	343	Peripla_BP_6: Periplasmic binding protein; PDB: 4E	98.73
cd06355	348	PBP1_FmdD_like Periplasmic component (FmdD) of an	98.71
cd06337	357	PBP1_ABC_ligand_binding_like_4 Type I periplasmic	98.64
cd06356	334	PBP1_Amide_Urea_BP_like Periplasmic component (Fmd	98.56
TIGR03407	359	urea_ABC_UrtA urea ABC transporter, urea binding p	98.46
TIGR03669	374	urea_ABC_arch urea ABC transporter, substrate-bind	98.38
cd06341	341	PBP1_ABC_ligand_binding_like_7 Type I periplasmic	98.27
cd06357	360	PBP1_AmiC Periplasmic binding domain of amidase (A	97.86
KOG1053|consensus	1258		97.52
cd01537	264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	95.74
cd06267	264	PBP1_LacI_sugar_binding_like Ligand binding domain	94.82
cd06300	272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	92.11
cd01536	267	PBP1_ABC_sugar_binding_like Periplasmic sugar-bind	91.47
cd06320	275	PBP1_allose_binding Periplasmic allose-binding dom	90.74
cd06282	266	PBP1_GntR_like_2 Ligand-binding domain of putative	90.01
PF13433	363	Peripla_BP_5: Periplasmic binding protein domain;	88.42
PF04348	536	LppC: LppC putative lipoprotein; InterPro: IPR0074	88.25
cd01545	270	PBP1_SalR Ligand-binding domain of DNA transcripti	87.66
TIGR00315	162	cdhB CO dehydrogenase/acetyl-CoA synthase complex,	86.63
cd06325	281	PBP1_ABC_uncharacterized_transporter Type I peripl	86.28
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	86.25
cd06323	268	PBP1_ribose_binding Periplasmic sugar-binding doma	85.13
COG2984	322	ABC-type uncharacterized transport system, peripla	84.39
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	82.29
PRK00945	171	acetyl-CoA decarbonylase/synthase complex subunit	82.15
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	81.24
PTZ00088	229	adenylate kinase 1; Provisional	80.93

>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor

Probab=99.92  E-value=3.3e-24  Score=173.59  Aligned_cols=137  Identities=31%  Similarity=0.565  Sum_probs=115.6

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCC-cccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFEL-KFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~-~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..++.|||||.|+..+..++.+|..|+||+|++++.++.+++ +..||+++|+.|++..++.++++++++|+|++|++||
T Consensus        65 ~~~v~aiiGp~~s~~~~~va~ia~~~~iP~Is~~a~~~~~s~~~~~yp~~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy  144 (387)
T cd06386          65 ARKPDLILGPVCEYAAAPVARLASHWNIPMISAGALAAGFSHKKSEYSHLTRVAPSYVKMGETFSALFERFHWRSALLVY  144 (387)
T ss_pred             hhCCCEEECCCCccHHHHHHHHHHhCCCcEEccccCchhhccCcccCCeeEEecCchHHHHHHHHHHHHhCCCeEEEEEE
Confidence            458999999999999999999999999999999999888887 6679999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD  157 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~  157 (159)
                      +++++     .+.|++.++++.+.++..+ ++++....+ .  .+..++.++|+++++.+||||++-
T Consensus       145 ~~~~~-----~~~~~~~~~~l~~~~~~~g-i~v~~~~~~-~--~~~~d~~~~l~~ik~~~rvii~~~  202 (387)
T cd06386         145 EDDKQ-----ERNCYFTLEGVHHVFQEEG-YHMSIYPFD-E--TKDLDLDEIIRAIQASERVVIMCA  202 (387)
T ss_pred             EcCCC-----CccceehHHHHHHHHHhcC-ceEEEEecC-C--CCcccHHHHHHHHHhcCcEEEEec
Confidence            88765     2457778999999988875 344332222 1  234589999999998779998873

Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.

>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=99.91  E-value=7.6e-24  Score=175.43  Aligned_cols=137  Identities=15%  Similarity=0.176  Sum_probs=117.9

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ..+++|+|||.||..+..+|.++..++||+|+++++++.++++..||+|+||.|++..++.|+++++++|||+||++|+.
T Consensus       101 ~~~vvavIG~~~S~~s~~va~i~~~~~IP~Is~~sts~~lsd~~~yp~ffRt~psd~~q~~ai~~li~~f~W~~Vaiv~~  180 (469)
T cd06365         101 QRKSVAVIGGPSWALSATIATLLGLYKFPQLTYGPFDPLLSDRVQFPSLYQMAPKDTSLPLGMVSLMLHFSWTWVGLVIS  180 (469)
T ss_pred             CCceEEEEcCCccHHHHHHHHHhhhhcccceeeccCCccccchhhCCcceEecCCchhHHHHHHHHHHhcCCeEEEEEEe
Confidence            46899999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCC-hHHHHHHHHHHhc-CceEEEeee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVT-PEKLKEQLIAITK-RARIIKSLD  157 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~-~~~~~~~L~~~~~-~aRIii~~~  157 (159)
                      ++++        +...++.+.+.+++.+ ++++....+.....+ ..++..+|+++++ .+||||++-
T Consensus       181 d~~y--------g~~~~~~~~~~~~~~g-i~I~~~~~i~~~~~~~~~~~~~~l~~i~~~~arvIvl~~  239 (469)
T cd06365         181 DDDR--------GEQFLSDLREEMQRNG-ICLAFVEKIPVNMQLYLTRAEKYYNQIMTSSAKVIIIYG  239 (469)
T ss_pred             cChh--------HHHHHHHHHHHHHHCC-eEEEEEEEecCCchhhHHHHHHHHHHhhcCCCeEEEEEc
Confidence            8765        6678899999999875 787777777653211 2477888888874 689887753

Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.

>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor

Probab=99.89  E-value=1.3e-22  Score=167.65  Aligned_cols=136  Identities=15%  Similarity=0.148  Sum_probs=117.6

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ...++.|||||.+|..+..++.++..++||+|+++++++.++++..||+|+|+.|++..++.++++++++|||+||++|+
T Consensus       102 ~~~~V~aVIG~~~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~  181 (458)
T cd06375         102 SPLAIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVA  181 (458)
T ss_pred             CCCCeEEEEcCCCchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEE
Confidence            45689999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHh--cCceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAIT--KRARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~--~~aRIii~~  156 (159)
                      +++++        +...++.+.+.+++.+ ++++....+... .+..++.+++++++  ..+||||+.
T Consensus       182 ~~~~y--------G~~~~~~~~~~~~~~g-i~i~~~~~i~~~-~~~~d~~~~l~~l~~~~~a~vVvl~  239 (458)
T cd06375         182 SEGDY--------GETGIEAFEQEARLRN-ICIATSEKVGRS-ADRKSYDSVIRKLLQKPNARVVVLF  239 (458)
T ss_pred             eCchH--------HHHHHHHHHHHHHHCC-eeEEEEEEecCC-CCHHHHHHHHHHHhccCCCEEEEEe
Confidence            98865        5567888888888875 677766777542 24568889998876  368987764

Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes

>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor

Probab=99.89  E-value=2.2e-22  Score=163.51  Aligned_cols=139  Identities=28%  Similarity=0.542  Sum_probs=114.7

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE-E
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF-M   89 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~-i   89 (159)
                      ..+++.|+|||.||..+..++.++..||+|+|+++++++.++++..||+++|+.|++..++.++++++++|+|+++++ +
T Consensus        71 ~~~~v~aiiGp~~S~~~~~va~~a~~~~iP~Is~~a~~~~l~~~~~~~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~ii  150 (405)
T cd06385          71 FTHNPWAFIGPGCDYTASPVARFTTHWDVPLVTAGAPALGFGVKDEYATITRTGPTHKKLGEFVLHIHQHFGWRSHAMLI  150 (405)
T ss_pred             HhcCCcEEECCCccchHHHHHHHHhccCCcEEccccChhhcCCcccCcceEEecCchHHHHHHHHHHHHhCCCeEEEEEE
Confidence            346889999999999999999999999999999999988999888999999999999999999999999999999985 5


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD  157 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~  157 (159)
                      |.+++.    .++.|+..++++.+.+++.+ ++++.. .+..  .+..++..+|+++++.+||||++-
T Consensus       151 ~~~~~~----~~~~~~~~~~~l~~~~~~~g-i~v~~~-~~~~--~~~~d~~~~l~~ik~~~~iii~~~  210 (405)
T cd06385         151 YSDNKV----DDRPCYFAMEGLYMELKKNN-ITVVDL-VFEE--DDLINYTTLLQDIKQKGRVIYVCC  210 (405)
T ss_pred             EecCcc----cccchHHHHHHHHHHHHhCC-eEEEEe-eccC--CchhhHHHHHHHHhhcceEEEEeC
Confidence            554432    12457778899999997764 455433 3332  235689999999998889998753

Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.

>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor

Probab=99.88  E-value=6.6e-22  Score=161.15  Aligned_cols=136  Identities=13%  Similarity=0.154  Sum_probs=114.6

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ++++.|++||.+|..+..++.++..++||+|+++++++.++++..||+|+|+.|++..++.++++++++|+|+||++|++
T Consensus       101 ~~~V~aVIG~~~S~~s~ava~v~~~~~IP~IS~~ats~~Ls~~~~~~~ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~~  180 (403)
T cd06361         101 VPRIKAVIGAGYSEISMAVSRMLNLQLIPQVSYASTAEILSDKIRFPSFLRTVPSDFYQTKAMAHLIKKSGWNWVGIIIT  180 (403)
T ss_pred             CCCeEEEECCCcchHHHHHHHHhccCCcceEecCcCCcccCCcccCCCeeECCCchHhHHHHHHHHHHHcCCcEEEEEEe
Confidence            36899999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCCh----HHHHHHHHHHhc-CceEEEee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTP----EKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~----~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++++        +...++.+.+.+++.+ +|++..+.+.....+.    .++..+++.++. .+||||+.
T Consensus       181 ~d~y--------G~~~~~~f~~~~~~~G-icIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv~  241 (403)
T cd06361         181 DDDY--------GRSALETFIIQAEANG-VCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVF  241 (403)
T ss_pred             cCch--------HHHHHHHHHHHHHHCC-eEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEEE
Confidence            8876        4567888888888875 7887777775521121    345556666664 68988764

This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.

>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor

Probab=99.88  E-value=7.3e-22  Score=163.62  Aligned_cols=136  Identities=14%  Similarity=0.184  Sum_probs=116.3

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      .+.+|.|||||.||..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.++++++++|+|+||++|+
T Consensus       114 ~~~~V~aiiGp~~S~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~~p~~fRt~p~d~~~~~al~~l~~~~~W~~Vaii~  193 (472)
T cd06374         114 SKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVH  193 (472)
T ss_pred             CCCCeEEEECCCcchHHHHHHHHhhhhcccccccccCchhhcccccCCceEEcCCChHHHHHHHHHHHHHCCCcEEEEEE
Confidence            35689999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc---CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK---RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~---~aRIii~~  156 (159)
                      +++++        +...++.+.+.+++.+ ++++....+... ....++.++|+++++   ++|||+++
T Consensus       194 ~~~~y--------g~~~~~~~~~~~~~~g-i~i~~~~~i~~~-~~~~d~~~~l~~lk~~~~da~vvv~~  252 (472)
T cd06374         194 TEGNY--------GESGMEAFKELAAHEG-LCIAHSDKIYSN-AGEQSFDRLLRKLRSRLPKARVVVCF  252 (472)
T ss_pred             ecchH--------HHHHHHHHHHHHHHCC-eeEEEEEEecCC-CchHHHHHHHHHHHhcCCCcEEEEEE
Confidence            98765        4556788888888875 677666666432 245688889998884   57887764

Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor

Probab=99.87  E-value=2.4e-21  Score=160.13  Aligned_cols=137  Identities=15%  Similarity=0.168  Sum_probs=113.4

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      .+++|.|||||.+|..+.+++.++..++||+|+++++++.++++..||+|+|+.|++..++.++++++++|+|++|++|+
T Consensus       100 ~~~~V~aviG~~~S~~t~ava~i~~~~~iP~Is~~ats~~ls~~~~~~~ffR~~p~d~~~~~ai~~~i~~~~w~~Vaii~  179 (463)
T cd06376         100 KPEKVVGVIGASASSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLA  179 (463)
T ss_pred             CCCCeEEEECCCCchHHHHHHHHhccccCcccccccCChhhcccccCCceEEccCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence            34689999999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc--CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK--RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~--~aRIii~~  156 (159)
                      .++++        +...++.+.+.+++.+++++.....+... ....++.++|+++++  .+||||+.
T Consensus       180 ~~~~y--------g~~~~~~~~~~~~~~g~~~v~~~~~i~~~-~~~~d~~~~l~~ik~~~~~~vIvl~  238 (463)
T cd06376         180 SEGNY--------GESGVEAFTQISREAGGVCIAQSIKIPRE-PRPGEFDKIIKRLLETPNARAVIIF  238 (463)
T ss_pred             eCChH--------HHHHHHHHHHHHHHcCCceEEEEEecCCC-CCHHHHHHHHHHHhccCCCeEEEEe
Confidence            87764        45667888888877543344343344332 245789999999964  68887764

Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues

Probab=99.87  E-value=3.2e-21  Score=155.95  Aligned_cols=131  Identities=16%  Similarity=0.206  Sum_probs=111.3

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      .++|.|||||.||.++..++.++..||||+|+++++++.+.++..|++|+|+.|++   +.+++.++++|+|+++++|++
T Consensus        64 ~~~V~aviGp~~S~~~~a~a~va~~~~iP~Is~~a~~~~lt~~~~y~~f~r~~~~~---~~~~~~~~~~~~w~~vaii~~  140 (382)
T cd06371          64 EGYASAFVGPVNPGYCEAAALLAKEWDKALFSWGCVNYELDDVRSYPTFARTLPSP---SRVLFTVLRYFRWAHVAIVSS  140 (382)
T ss_pred             cCCceEEECCCCchHHHHHHHHHHhcCceEEecccCchhhcCcccCCCceecCCCc---HHHHHHHHHHCCCeEEEEEEe
Confidence            46899999999999999999999999999999999998898878899999999886   567889999999999999999


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC--ceEEEeee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR--ARIIKSLD  157 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~--aRIii~~~  157 (159)
                      ++++        +...++.+.+.+++.+ ++++....+..   +..++.++|+++|..  +||||++.
T Consensus       141 ~~~~--------~~~~~~~l~~~l~~~g-i~v~~~~~~~~---~~~d~~~~L~~lk~~~~~~viv~~~  196 (382)
T cd06371         141 PQDI--------WVETAQKLASALRAHG-LPVGLVTSMGP---DEKGAREALKKVRSADRVRVVIMCM  196 (382)
T ss_pred             cccc--------hHHHHHHHHHHHHHCC-CcEEEEEEecC---CHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            8764        4557888999888775 56555566643   457899999999973  58888764

This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge

>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure []

Probab=99.87  E-value=8.4e-22  Score=155.28  Aligned_cols=139  Identities=23%  Similarity=0.324  Sum_probs=107.1

Q ss_pred             ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCC-cccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570          10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFEL-KFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus        10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~-~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      ..++++.|||||.|+..+..++++++.|++|+|+++++.+.+++ +..||+++|+.|+...++.++++++++|+|++|++
T Consensus        47 ~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~v~v  126 (348)
T PF01094_consen   47 LNKQGVVAVIGPSCSSSAEAVASLASEWNIPQISPGSTSPSLSDRKTRYPTFFRTVPSDSSQARALVDLLKHFGWTRVSV  126 (348)
T ss_dssp             HHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEESSGGSGGGGSTTTTTTTEEESSB-HHHHHHHHHHHHHHTTSSEEEE
T ss_pred             ccCCCcEEEECCCcccccchhheeecccccceeeccccccccccchhhccccccccccHHHHHHHHHHhhhcCCCceeee
Confidence            35578999999999999999999999999999999999999999 89999999999999999999999999999999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCccee-eeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKL-ESFDEETVTPEKLKEQLIAITKRARIIKSLD  157 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~-~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~  157 (159)
                      |+++++.        +....+.+.+.+++.+. ..+.. ........+..++.+.|++.+..+||||++-
T Consensus       127 v~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~rvvil~~  187 (348)
T PF01094_consen  127 VYSDDDY--------GNSLADSFQDLLRERGG-ICVAFISVVISSDSDAEELLKKLKEIKSGARVVILCS  187 (348)
T ss_dssp             EEESSHH--------HHHHHHHHHHHHHHHTT-CEEEEEEEEETTTSHHHHHHHHHHHHTTTTSEEEEES
T ss_pred             ecccccc--------ccccchhhhhhhccccc-ceecccccccccccchhhhhhhhhhccccceeeeeec
Confidence            9998753        44557788888877532 22222 2222211233445555555446788887653

; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=99.87  E-value=4.1e-21  Score=160.67  Aligned_cols=136  Identities=15%  Similarity=0.152  Sum_probs=117.6

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ...++.|+|||.+|..+..++.++..++||+|+++++++.++++..||+|+|+.|++..++.++++++++|+|+||++|+
T Consensus       115 ~~~~v~aVIG~~sS~~s~ava~~~~~~~IP~IS~~sss~~ls~~~~yp~ffRt~psd~~q~~Ai~~l~~~f~wk~VaiI~  194 (510)
T cd06364         115 HIPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIA  194 (510)
T ss_pred             CCCceEEEECCCchhHHHHHHHHhccccccccccccCCcccCCccccCCeeEcCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence            44568999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      .++++        +...++.+.+.+++.+ ++++..+.+... .+..++.+++++++. .+||||+.
T Consensus       195 ~dd~y--------G~~~~~~~~~~~~~~G-i~I~~~~~i~~~-~~~~d~~~~l~klk~~~a~vVvl~  251 (510)
T cd06364         195 ADDDY--------GRPGIEKFREEAEERD-ICIDFSELISQY-SDEEEIQRVVEVIQNSTAKVIVVF  251 (510)
T ss_pred             ecCcc--------hHHHHHHHHHHHHHCC-cEEEEEEEeCCC-CCHHHHHHHHHHHHhcCCeEEEEE
Confidence            98875        5567888989888875 777766666542 256688889988876 68888764

Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci

>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR)

Probab=99.86  E-value=4.8e-21  Score=157.62  Aligned_cols=136  Identities=19%  Similarity=0.197  Sum_probs=116.5

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      .+.++.|||||.||..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.++++++++|+|++|++|+
T Consensus       100 ~~~~v~aviG~~~S~~~~av~~~~~~~~ip~Is~~sts~~ls~~~~~~~~fR~~p~d~~~~~a~~~~l~~~~w~~vaii~  179 (452)
T cd06362         100 SPKPVAGVIGASYSSVSIQVANLLRLFKIPQISYASTSPELSDKTRYDYFSRTVPPDSFQAQAMVDIVKAFNWTYVSTVA  179 (452)
T ss_pred             CCCCeEEEECCCCCchHHHHHHHhccccCcccccccCchhhccccccCCEEEecCChHHHHHHHHHHHHHCCCcEEEEEE
Confidence            45789999999999999999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc--CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK--RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~--~aRIii~~  156 (159)
                      +++++        +...++.+.+.+++.+ ++++....+... ....++.++++++++  .+||||+.
T Consensus       180 ~~~~~--------G~~~~~~~~~~~~~~g-i~i~~~~~~~~~-~~~~d~~~~l~~l~~~~~a~viil~  237 (452)
T cd06362         180 SEGNY--------GEKGIEAFEKLAAERG-ICIAGSEKIPSS-ATEEEFDNIIRKLLSKPNARVVVLF  237 (452)
T ss_pred             eCCHH--------HHHHHHHHHHHHHHCC-eeEEEEEEcCCC-CCHHHHHHHHHHHhhcCCCeEEEEE
Confidence            98764        5567888888888875 566655666542 245789999998874  58987664

Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.

>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor

Probab=99.86  E-value=6.8e-21  Score=154.63  Aligned_cols=138  Identities=26%  Similarity=0.441  Sum_probs=109.8

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCc-ccCCeeEEeeCChhhHHHHHHHHHHHcCCc-EEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAVQSILKNFNWT-VAGFM   89 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~-~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~-~v~~i   89 (159)
                      .+++.++|||.||.++.+++.++..|++|+|+++++++.++++ ..||+++|+.|++..++.++..++++|+|+ ++++|
T Consensus        71 ~~~v~aviGp~~S~~~~av~~i~~~~~iP~Is~~at~~~ls~~~~~y~~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaii  150 (399)
T cd06384          71 YSDPDVFFGPGCVYPTASVARFATHWRLPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWTSRAALL  150 (399)
T ss_pred             hcCCCEEECCCCchHHHHHHHHHhhcCCcEEeeccchhhhccccccCCceEEecCcHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            4678899999999999999999999999999999998888876 589999999999999999999999999999 58899


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD  157 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~  157 (159)
                      |++++.    ++..++...+++.+.+++.+ ++++. ..+..  .+..++.++|+++|..+|||+++-
T Consensus       151 y~~~~~----~~~~~~~~~~~~~~~~~~~g-i~v~~-~~~~~--~~~~d~~~~l~~ik~~~~vIi~~~  210 (399)
T cd06384         151 YLDLKT----DDRPHYFISEGVFLALQEEN-ANVSA-HPYHI--EKNSDIIEIIQFIKQNGRIVYICG  210 (399)
T ss_pred             EecCCc----cCCcceEehHHHHHHHHhcC-ceEEE-EEEec--cchhhHHHHHHHHhhcccEEEEeC
Confidence            876532    12234446777888887764 34332 22222  235689999999998899998653

Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.

>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C

Probab=99.84  E-value=5.9e-21  Score=151.82  Aligned_cols=133  Identities=18%  Similarity=0.322  Sum_probs=110.1

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH------HHcCCcE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL------KNFNWTV   85 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll------~~f~W~~   85 (159)
                      .+..++++||.|.+++.++++++.+|++|+||.|+....++.|   ++++|+.|+..+++..++.+.      ++|+|+ 
T Consensus        79 ~~~gcv~lGP~CtYat~~~~~~~~~~~~P~ISaGsfglscd~k---~~LTR~~pparK~~~~~~~f~~~~~~~~~~~W~-  154 (380)
T cd06369          79 GRLGCVLLGPSCTYATFQMVDDEFNLSLPIISAGSFGLSCDYK---ENLTRLLPPARKISDFFVDFWKEKNFPKKPKWE-  154 (380)
T ss_pred             CccCcEEEcCccceehhhhhhhhhcCCCceEeccccccCCCch---hhhhhcCchHHHHHHHHHHHHhcccccCCCCCc-
Confidence            4567899999999999999999999999999999987777665   389999999999999999999      599997 


Q ss_pred             EEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeeeC
Q psy8570          86 AGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLDA  158 (159)
Q Consensus        86 v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~~  158 (159)
                      -++||++++     ..++|++.+++|.......+  .   ...|.+....+++++++|+++++.+||||+|.+
T Consensus       155 ~ayvyk~~~-----~~edCf~~i~al~a~~~~f~--~---~~~~~~~l~~~~~~~~il~~~~~~sRIiImCG~  217 (380)
T cd06369         155 TAYVYKKQE-----NTEDCFWYINALEAGVAYFS--S---ALKFKELLRTEEELQKLLTDKNRKSNVIIMCGT  217 (380)
T ss_pred             eeEEEcCCC-----CccceeeEhHhhhhhhhhhh--h---cccceeeecCchhHHHHHHHhccCccEEEEeCC
Confidence            455999885     36789999999998777654  1   222222223457899999999999999998864

Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.

>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors

Probab=99.84  E-value=6.1e-20  Score=147.03  Aligned_cols=135  Identities=14%  Similarity=0.053  Sum_probs=108.5

Q ss_pred             cceeeEEEECCCCchh---HHHHHHHHhccCCcEEccccCCCCC-CCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEE
Q psy8570          11 FVVCVDAFLGPVCDYV---IAPVARYSGVWGIPVLTAGGLVANF-ELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVA   86 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~---~~~va~~~~~~~iP~is~~~~~~~l-~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v   86 (159)
                      ..+++.+++||.++..   +..++.++..++||+|++++.++.+ +++..|++++|+.|++..+++++++++++|+|++|
T Consensus        60 ~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~~~~~R~~p~~~~~~~ai~~ll~~~~w~~v  139 (362)
T cd06367          60 VVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPSLEQQADVMLEILEEYDWHQF  139 (362)
T ss_pred             cccceEEEEecCCCCccchhhhhhhhhhhhcCcEEEeeccccccccCCCcccceEeecCcHHHHHHHHHHHHHHcCCeEE
Confidence            3457999999999998   8999999999999999999998888 88889999999999999999999999999999999


Q ss_pred             EEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCC--cceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          87 GFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSN--DMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        87 ~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~--~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++||+++++        +...++.+.+.+++.+ ++  ++....++..  ...++..+++++++ .+|+||+.
T Consensus       140 aii~~~~~~--------g~~~~~~l~~~l~~~g-~~~~i~~~~~~~~~--~~~~~~~~l~~l~~~~~~vivl~  201 (362)
T cd06367         140 SVVTSRDPG--------YRDFLDRVETTLEESF-VGWEFQLVLTLDLS--DDDGDARLLRQLKKLESRVILLY  201 (362)
T ss_pred             EEEEEcCcc--------cHHHHHHHHHHHHhcc-cceeeeeeEEeccC--CCcchHHHHHHHHhcCCcEEEEe
Confidence            999998875        3345777888887764 45  4444444431  22266777777765 57776643

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits

>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family

Probab=99.83  E-value=7.9e-20  Score=148.04  Aligned_cols=137  Identities=36%  Similarity=0.662  Sum_probs=112.7

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      .+++.|||||.||..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.++++++++|+|+++++|++
T Consensus        71 ~~~v~aiiGp~~S~~~~av~~~~~~~~ip~Is~~as~~~lt~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vaii~~  150 (396)
T cd06373          71 QHKPDAFLGPGCEYAAAPVARFAAHWNVPVLTAGAPAAGFSDKSEYSTLTRTGPSYTKLGEFVLALHEHFNWSRAALLYH  150 (396)
T ss_pred             ccCCeEEECCCccchhHHHHHHHhcCCCceECccCCccccccchhcCceeeccccHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence            56899999999999999999999999999999999888888877899999999999999999999999999999999998


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCC-hHHHHHHHHHHhcCceEEEee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVT-PEKLKEQLIAITKRARIIKSL  156 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~-~~~~~~~L~~~~~~aRIii~~  156 (159)
                      +++.+    ...|...++++.+.+++.+ ++++ ...+...  + ..++.++|++++..+|+||++
T Consensus       151 ~~~~~----~~~~~~~~~~~~~~~~~~g-~~v~-~~~~~~~--~~~~d~~~~l~~ik~~~~vii~~  208 (396)
T cd06373         151 DDKND----DRPCYFTLEGVYTVLKEEN-ITVS-DFPFDED--KELDDYKELLRDISKKGRVVIMC  208 (396)
T ss_pred             CCCCC----cchHHHHHHHHHHHHhhcC-ceee-EEeecCC--ccccCHHHHHHHHHhcCcEEEEe
Confidence            87531    1226677888888887764 3433 3344331  1 367889999998777887764

Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli

>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G

Probab=99.83  E-value=1.6e-19  Score=145.96  Aligned_cols=139  Identities=20%  Similarity=0.323  Sum_probs=103.7

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ++++.|||||.||..+..++.++..|++|+|++++.++.++++..||+++|+.|++..++.++++++++|+|++|++||+
T Consensus        66 ~~~v~aiiGp~~S~~~~av~~va~~~~iP~is~~s~s~~ls~~~~~~~~~r~~p~~~~~~~a~~~l~~~~~w~~vaii~~  145 (391)
T cd06372          66 KEHISALFGPACPEAAEVTGLLASQWNIPMFGFVGQTAKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIGLFGG  145 (391)
T ss_pred             hcCceEEECCCCCcHHHHHHHHHhccCccEEEeecCCccccccccCCceEEecCchhhHHHHHHHHHHHCCCeEEEEEEe
Confidence            46899999999999999999999999999999999999999888899999999999999999999999999999999997


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD  157 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~  157 (159)
                      +++..   ....+....+.+.+.++ .+ +.++..+.+..  .+.+....+++.++..+||||++-
T Consensus       146 ~~~~~---~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~~~--~~~d~~~~~l~~~~~~~~vii~~~  204 (391)
T cd06372         146 SSRDS---SWDEVDELWKAVENQLK-FH-FNITATVRYSS--SNPDLLQEKLRYISSVARVIILIC  204 (391)
T ss_pred             ccccc---hhhhHHHHHHHHHHHHh-hC-EEEEEEEecCC--CChHHHHHHHHhhhccceEEEEEc
Confidence            64310   00001223344445553 22 33444444433  233334457777777899987653

This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.

>KOG1056|consensus

Probab=99.83  E-value=4.9e-20  Score=158.55  Aligned_cols=137  Identities=20%  Similarity=0.192  Sum_probs=119.4

Q ss_pred             ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570          10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM   89 (159)
Q Consensus        10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i   89 (159)
                      .....|.++|||+.|..+..++.+...++||||+|+++++.++||.+|++|.|+.|+|..|++|+++++++|||+||..+
T Consensus       121 g~sp~v~~VIG~s~Ssvsi~vanlLrlf~ipQisyaSts~~LSdk~ry~~F~RtVP~D~~Qa~Am~~il~~f~W~yVstv  200 (878)
T KOG1056|consen  121 GYSPPVVAVIGPSYSSVSIAVANLLRLFLIPQISYASTSPDLSDKTRYDYFLRTVPSDVFQAQAMVDILKKFNWNYVSTV  200 (878)
T ss_pred             CCCCceeEEeCCCCchHHHHHHHHHHhhcCceeccccCCcccccchhhhceeeecCChHHHHHHHHHHHHHhCeeEeeeh
Confidence            33456999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc--CceEEEee
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK--RARIIKSL  156 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~--~aRIii~~  156 (159)
                      +++++|        +...++++.++.++.+ +|+...++.... .....+..+++++..  ++|++|++
T Consensus       201 ~s~~dY--------GE~Gieaf~~~a~~~~-iCIa~s~ki~~~-~~~~~~~~~l~kl~~~~~a~vvV~F  259 (878)
T KOG1056|consen  201 ASEGDY--------GESGIEAFKEEAAERG-ICIAFSEKIYQL-SIEQEFDCVLRKLLETPNARVVVVF  259 (878)
T ss_pred             hcCccc--------hhhhHHHHHHhHHhcC-ceEEehhhcccc-cchhHHHHHHHHHhhcCCCeEEEEe
Confidence            999886        4578899999888885 787766665553 456678888887764  68988875

>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases

Probab=99.82  E-value=2.5e-19  Score=145.74  Aligned_cols=136  Identities=19%  Similarity=0.319  Sum_probs=111.2

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..+++.|||||.||  +..++.++..|+||+|+++++.+.++++..|++|+|+.|++..++.+++.++++|+|+++++|+
T Consensus        66 i~~~v~aiiGp~~S--~~~~a~i~~~~~iP~Is~~a~~~~l~~~~~~~~f~r~~~~~~~~~~a~~~~~~~~~w~~vaii~  143 (404)
T cd06370          66 WKRGVVAFIGPECT--CTTEARLAAAWNLPMISYKCDEEPVSDKSKYPTFARTVPPSIQVVKSVIALLKHFNWNKFSVVY  143 (404)
T ss_pred             HhcCceEEECCCch--hHHHHHHHhhcCCcEEecccCCccccccccCCCeEEcCCCHHHHHHHHHHHHHHCCCcEEEEEE
Confidence            35689999999998  4456789999999999999998888888789999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccC----CChHHHHHHHHHHhcCceEEEeee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET----VTPEKLKEQLIAITKRARIIKSLD  157 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~----~~~~~~~~~L~~~~~~aRIii~~~  157 (159)
                      .++++        +....+.+.+.+++.+ ++++....+....    .+..++.++|++++..+|++|++.
T Consensus       144 ~~~~~--------g~~~~~~~~~~~~~~g-~~iv~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~  205 (404)
T cd06370         144 ENDSK--------YSSVFETLKEEAELRN-ITISHVEYYADFYPPDPIMDNPFEDIIQRTKETTRIYVFIG  205 (404)
T ss_pred             ecCcc--------cHHHHHHHHHHHHHcC-CEEEEEEEECCCCCchhhhHHHHHHHHHhccCCCEEEEEEc
Confidence            98865        4456777777887764 5666666665421    114678889998888889887764

Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.

>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors

Probab=99.82  E-value=5.5e-19  Score=135.68  Aligned_cols=135  Identities=21%  Similarity=0.289  Sum_probs=111.4

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ..++.|++||.|+..+..++.++..+++|+|++++..+.++++..+|+++|+.|++..++.++++++++|+|++++++|+
T Consensus        69 ~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~~  148 (298)
T cd06269          69 SRGVVAVIGPSSSSSAEAVASLLGALHIPQISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYS  148 (298)
T ss_pred             CCceEEEECCCCchHHHHHHHHhccCCCcEEecccCchhhcChhhCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEEe
Confidence            46899999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-ceEEEeeeC
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-ARIIKSLDA  158 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-aRIii~~~~  158 (159)
                      ++++        +....+.+.+.+++.+ +++.....+..   ...++.+.++++++. +||||.+..
T Consensus       149 ~~~~--------~~~~~~~~~~~~~~~~-~~v~~~~~~~~---~~~~~~~~l~~l~~~~~~viv~~~~  204 (298)
T cd06269         149 DDDY--------GRRLLELLEEELEKNG-ICVAFVESIPD---GSEDIRRLLKELKSSTARVIVVFSS  204 (298)
T ss_pred             cchh--------hHHHHHHHHHHHHHCC-eeEEEEEEcCC---CHHHHHHHHHHHHhcCCcEEEEEec
Confidence            8763        4555666666666643 34444444432   236788899999864 599887753

This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va

>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors

Probab=99.82  E-value=4.4e-19  Score=143.06  Aligned_cols=129  Identities=15%  Similarity=0.149  Sum_probs=95.2

Q ss_pred             eccceee--EEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEE
Q psy8570           9 TGFVVCV--DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVA   86 (159)
Q Consensus         9 ~~~~~~v--~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v   86 (159)
                      +++++++  .|||||.++..+..++++|+.++||+|+++.+..  ++ .+||+++|+.|++..+++|+++|++||||+||
T Consensus        60 ~~~~~gv~~~AIiGp~ss~~a~~V~si~~~~~IP~Is~s~~~~--~~-~~~p~~ir~~Ps~~~~~~Ai~dlI~~f~W~~v  136 (368)
T cd06383          60 DKADSAIVPHLVLDTTTCGDASEIKSVTGALGIPTFSASYGQE--GD-LEQPYLIQLMPPADDIVEAIRDIVSYYNITNA  136 (368)
T ss_pred             HHHHccCCcEEEECCCcchhHHHHHHHHhccCCCEEEccCCCc--Cc-ccCceEEEEeCChHHHHHHHHHHHHHCCCcEE
Confidence            3566787  8999999999999999999999999999865422  22 37999999999999999999999999999999


Q ss_pred             EEEEEeCCCcCCCCCCchH-hHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-c-eEEEeee
Q psy8570          87 GFMFNNYGQTTGKGNSNCW-FTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-A-RIIKSLD  157 (159)
Q Consensus        87 ~~i~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-a-RIii~~~  157 (159)
                      ++||++++         +. ..++.+.+....... +.+   . ..   ...++.+.|+++++. + ||||++.
T Consensus       137 ~iIYddd~---------gl~~~l~~~l~~~~~~~~-~~v---~-~~---~~~~~~~~Lk~lk~~~~~rIIi~~s  193 (368)
T cd06383         137 AILYDDDF---------VMDHKYKSLLQNWPTRHV-ITI---I-NS---IIDEVREQIKRLRNLDIKNIFILGS  193 (368)
T ss_pred             EEEEEcCc---------hhhHHHHHHHHhHHhcCC-EEE---E-ec---cchhHHHHHHHHHhCCCeEEEEEeC
Confidence            99997764         22 133344433333221 221   1 11   234688899999864 4 7777765

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.

>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor

Probab=99.81  E-value=5.2e-19  Score=144.12  Aligned_cols=137  Identities=18%  Similarity=0.186  Sum_probs=114.2

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..+++.|||||.||..+..++.++..+++|+|++++.++.++++..||+++|+.|++..++.++++++++|+|+++++++
T Consensus       104 ~~~~V~aIiGp~~S~~~~av~~i~~~~~vp~is~~~~~~~lt~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~k~vaii~  183 (410)
T cd06363         104 YQPRVVAVIGPDSSTLALTVAPLFSFFLIPQISYGASSEVLSNKELYPSFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLG  183 (410)
T ss_pred             CCCCeEEEECCCccHHHHHHHHHhcccccccccccccCccccccccCCCeeEecCCcHHHHHHHHHHHHHCCCcEEEEEE
Confidence            45799999999999999999999999999999999988888887789999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      .++++        +...++.+.+.+++.+ ++++....+........++.++|++++. .+++||+.
T Consensus       184 ~~~~~--------g~~~~~~~~~~l~~~g-i~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~  241 (410)
T cd06363         184 SDDEY--------GRDGLQLFSELIANTG-ICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVF  241 (410)
T ss_pred             eCChh--------HHHHHHHHHHHHHHCC-eEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEE
Confidence            87764        4556788888888775 5555555554321235689999999985 57877653

Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.

>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)

Probab=99.81  E-value=8.6e-19  Score=139.06  Aligned_cols=135  Identities=22%  Similarity=0.323  Sum_probs=115.2

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.+++||.||..+..++.++..+++|+|++++.++.++++..||+++|+.|++..++.++++++++|+|+++++++.+
T Consensus        90 ~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~~~~v~~l~~~  169 (348)
T cd06350          90 PKVVAVIGPGSSSVSMAVAELLGLFKIPQISYGATSPLLSDKLQFPSFFRTVPSDTSQALAIVALLKHFGWTWVGLVYSD  169 (348)
T ss_pred             CceEEEECCCccHHHHHHHHHHhcCcCceecccCCChhhccccccCCeeEecCCcHHHHHHHHHHHHHCCCeEEEEEEec
Confidence            68999999999999999999999999999999999888888888999999999999999999999999999999999997


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEeee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSLD  157 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~~  157 (159)
                      +++        +....+.+.+.+++.+ ++++....+... ....++..++++++. .+||||++-
T Consensus       170 ~~~--------g~~~~~~~~~~~~~~g-i~v~~~~~~~~~-~~~~d~~~~l~~l~~~~~~vvv~~~  225 (348)
T cd06350         170 DDY--------GRSGLSDLEEELEKNG-ICIAFVEAIPPS-STEEDIKRILKKLKSSTARVIVVFG  225 (348)
T ss_pred             chh--------HHHHHHHHHHHHHHCC-CcEEEEEEccCC-CcHHHHHHHHHHHHhCCCcEEEEEe
Confidence            754        5567788888888875 576666666542 125688999999986 468887653

Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor

Probab=99.78  E-value=4.3e-18  Score=137.19  Aligned_cols=134  Identities=14%  Similarity=0.148  Sum_probs=105.6

Q ss_pred             cceeeEEEE-CCCCch----hHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcE
Q psy8570          11 FVVCVDAFL-GPVCDY----VIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTV   85 (159)
Q Consensus        11 ~~~~v~aii-Gp~~s~----~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~   85 (159)
                      ..+++.|++ |+.++.    .+..++.++..|+||+|++++.++.++++..|++++|+.|++..++.++++++++|+|++
T Consensus        77 i~~~V~aii~~~~~ss~~~~~~~~v~~~~~~~~iP~Is~~a~~~~ls~~~~~~~~~R~~psd~~~~~a~~~~l~~~~w~~  156 (377)
T cd06379          77 ISNQVYAVIVSHPPTSNDHLTPTSVSYTAGFYRIPVVGISTRDSIFSDKNIHLSFLRTVPPYSHQADVWLEMLRSFKWNK  156 (377)
T ss_pred             hhcceEEEEEeCCCCCcccccHHHHHHHhhCCCCcEEecccCCccccCccccccEEEecCCHHHHHHHHHHHHHHcCCeE
Confidence            356899987 344332    466789999999999999998888888877799999999999999999999999999999


Q ss_pred             EEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCC----CcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          86 AGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGS----NDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        86 v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~----~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +++||+++++        +...++.+.+.+++.+ +    +++..+.+..   +..++...|++++. .+|+||+.
T Consensus       157 vaii~~~~~~--------g~~~~~~~~~~~~~~g-~~~~~~v~~~~~~~~---~~~d~~~~l~~ik~~~~~vIvl~  220 (377)
T cd06379         157 VILLVSDDHE--------GRAAQKRFETLLEERE-IEFKIKVEKVVEFEP---GEKNVTSLLQEAKELTSRVILLS  220 (377)
T ss_pred             EEEEEEcCcc--------hhHHHHHHHHHHHhcC-CccceeeeEEEecCC---chhhHHHHHHHHhhcCCeEEEEE
Confidence            9999998875        3345677888887764 4    3344444533   34678899999886 68888754

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore

>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)

Probab=99.78  E-value=1.1e-17  Score=131.15  Aligned_cols=133  Identities=17%  Similarity=0.253  Sum_probs=107.4

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ..++.|++||.|+..+..++.+|..+++|+|++++..+.+.++..+++++|+.|+...++.++++++++|+|+++++||+
T Consensus        61 ~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~iiy~  140 (328)
T cd06351          61 SQGVAAIFGPTSSESASAVQSICDALEIPHISISGGSEGLSDKEESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIYD  140 (328)
T ss_pred             ccCcEEEECCCCHHHHHHHHHHhccCCCCeEEeecCcccccccccccceEEecCCHHHHHHHHHHHHHHcCCcEEEEEEe
Confidence            77899999999999999999999999999999998888777767889999999999999999999999999999999999


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-c-eEEEeeeC
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-A-RIIKSLDA  158 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-a-RIii~~~~  158 (159)
                      +++         +...++.+.+.....+  ..+....++.   +.++++++|+++++. + |||+++.+
T Consensus       141 ~~~---------~~~~l~~~~~~~~~~~--~~v~~~~~~~---~~~~~~~~l~~l~~~~~~~vil~~~~  195 (328)
T cd06351         141 SDE---------GLSRLQELLDESGIKG--IQVTVRRLDL---DDDNYRQLLKELKRSESRRIILDCSS  195 (328)
T ss_pred             Cch---------HHHHHHHHHHhhcccC--ceEEEEEecC---CchhHHHHHHHHhhcccceEEEECCc
Confidence            764         4556666666555432  2333344443   223788999999864 5 88887643

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors

>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

Probab=99.77  E-value=1.1e-17  Score=133.18  Aligned_cols=134  Identities=19%  Similarity=0.336  Sum_probs=112.2

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.++|||.|+..+..++.++..+++|+|++++.++.++++..+|+++|+.|++..++.++++++++++|+++++|+.+
T Consensus        65 ~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~  144 (350)
T cd06366          65 KPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGWRRVATIYED  144 (350)
T ss_pred             CCceEEECCCcHHHHHHHHHHhhcCCeeEEeccCCCccccccccCCceEEcccchHhHHHHHHHHHHHCCCcEEEEEEEc
Confidence            48999999999999999999999999999999998888877778999999999999999999999999999999999998


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +++        +....+.+.+.+++.+ +.++....+... .+..++...|++++. .+|+|+++
T Consensus       145 ~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~~-~~~~d~~~~l~~i~~~~~dvvi~~  199 (350)
T cd06366         145 DDY--------GSGGLPDLVDALQEAG-IEISYRAAFPPS-ANDDDITDALKKLKEKDSRVIVVH  199 (350)
T ss_pred             Ccc--------cchhHHHHHHHHHHcC-CEEEEEeccCCC-CChhHHHHHHHHHhcCCCeEEEEE
Confidence            764        4445678888888775 455555555432 124689999999985 68888765

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.

>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors

Probab=99.77  E-value=1.3e-17  Score=134.46  Aligned_cols=137  Identities=34%  Similarity=0.593  Sum_probs=114.3

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ..++.|||||.||..+..++.++..+++|+|+++++.+.++++..|++++|+.|++..++.++++++++++|++++++++
T Consensus        66 ~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~Is~~~~~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~~~~~v~ii~~  145 (389)
T cd06352          66 EHNVDAFIGPGCPYACAPVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYS  145 (389)
T ss_pred             hcCCcEEECCCChhHHHHHHHHHhcCCCCEecccccccccCccccCCceeecCCcHHHHHHHHHHHHHHcCceEEEEEEe
Confidence            46899999999999999999999999999999999888888777899999999999999999999999999999999998


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD  157 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~  157 (159)
                      ++..       .|...++.+.+.+++.+ ++++....+.... +..++..+|++++..+||||++.
T Consensus       146 ~~~~-------~g~~~~~~~~~~~~~~G-~~v~~~~~~~~~~-~~~d~~~~l~~i~~~~~vii~~~  202 (389)
T cd06352         146 DDSE-------NCFFTLEALEAALREFN-LTVSHVVFMEDNS-GAEDLLEILQDIKRRSRIIIMCG  202 (389)
T ss_pred             cCCc-------cHHHHHHHHHHHHHhcC-CeEEEEEEecCCc-cchhHHHHHHHhhhcceEEEEEC
Confidence            7641       26677888889887765 4665555564421 14678889999987668887764

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l

>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor

Probab=99.76  E-value=1.3e-17  Score=134.38  Aligned_cols=126  Identities=12%  Similarity=0.181  Sum_probs=99.7

Q ss_pred             eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570           9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus         9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      +++++||.|||||.++.++..++++|...+||++++..+  .. ..  .++++|+.|+   +++|+++++++|||++|++
T Consensus        51 ~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~--~~-~~--~~~~i~~~P~---~~~Ai~diI~~~~W~~v~i  122 (364)
T cd06390          51 SQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFP--VD-TS--NQFVLQLRPE---LQDALISVIEHYKWQKFVY  122 (364)
T ss_pred             HHhhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCC--CC-CC--CceEEEeChh---HHHHHHHHHHHcCCcEEEE
Confidence            468899999999999999999999999999999987553  12 22  2347999998   8999999999999999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      ||+++ +        +...++.|.+.+.+.+ +++.....+..   +.++++++|+++++ ..|+||+
T Consensus       123 IYd~d-~--------g~~~lq~l~~~~~~~~-~~I~~~~~~~~---~~~d~~~~L~~ik~~~~rvIVl  177 (364)
T cd06390         123 IYDAD-R--------GLSVLQKVLDTAAEKN-WQVTAVNILTT---TEEGYRKLFQDLDKKKERLIVV  177 (364)
T ss_pred             EEeCC-c--------cHHHHHHHHHhhhccC-ceeeEEEeecC---ChHHHHHHHHhccccCCeEEEE
Confidence            99755 3        6678999999888875 45444333332   35689999999986 4666554

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor

Probab=99.76  E-value=2.5e-17  Score=133.27  Aligned_cols=129  Identities=9%  Similarity=0.151  Sum_probs=101.2

Q ss_pred             ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570          10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM   89 (159)
Q Consensus        10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i   89 (159)
                      .+.++|.|||||.||..+..++.++..++||+|+++++++.++++.  ++++|+.|++..++.+++.++++|+|++|++|
T Consensus        68 ~l~~~V~AiiGp~~S~~~~av~~i~~~~~iP~Is~~~t~~~lt~~~--~~~~~~~~~~~~~~~a~~~~~~~~~wk~vail  145 (384)
T cd06393          68 QLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKD--TFYVNLYPDYASLSHAILDLVQYLKWRSATVV  145 (384)
T ss_pred             ccccCcEEEECCCChHHHHHHHHHHhccCCCeEeccCCCcccCccc--eeEEEeccCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            3457999999999999999999999999999999998887777653  35788889998999999999999999999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-ceEEE
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-ARIIK  154 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-aRIii  154 (159)
                      |++++         +...++.+.+..++.+ ++++ ...+..   +..+++.+|+++|.. .++||
T Consensus       146 y~~~~---------g~~~l~~~~~~~~~~g-~~v~-~~~~~~---~~~d~~~~L~~ik~~~~~~ii  197 (384)
T cd06393         146 YDDST---------GLIRLQELIMAPSRYN-IRLK-IRQLPT---DSDDARPLLKEMKRGREFRII  197 (384)
T ss_pred             EeCch---------hHHHHHHHHHhhhccC-ceEE-EEECCC---CchHHHHHHHHHhhcCceEEE
Confidence            97652         4455667777676654 3432 233432   346899999999864 44443

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated

>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor

Probab=99.75  E-value=2.5e-17  Score=131.30  Aligned_cols=130  Identities=16%  Similarity=0.205  Sum_probs=95.0

Q ss_pred             ccceeeEEEECCCCchh-HHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570          10 GFVVCVDAFLGPVCDYV-IAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus        10 ~~~~~v~aiiGp~~s~~-~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      .+.++|.|||||.+|.. +..++.+|...+||+|+++..........+|++ +++.|++..+++|+++|+++|+|+++++
T Consensus        61 ~l~~gV~AIiGp~ss~~~~~~v~~i~~~~~VP~Is~~~~~~~~~~~~~~~~-i~l~P~~~~~~~Ai~dli~~~~W~~v~~  139 (333)
T cd06394          61 ILPKGVVSVLGPSSSPASSSIVSHICGEKEIPHFKVGPEETPKLQYLRFAS-VNLHPSNEDISVAVAGILNSFNYPTASL  139 (333)
T ss_pred             HHhcCeEEEECCCCchHHHHHHHHHhhccCCceEEeccccCcccccccceE-EEecCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            34779999999999965 579999999999999998754321112224444 8999999999999999999999999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      ||++++         +...++++.+.....+  ..+.....    .+..+++.+|+++++ ..|+||+
T Consensus       140 iYe~d~---------~l~~L~~~l~~~~~~~--~~i~~~~~----~~~~d~~~~L~~ik~~~~~~iVv  192 (333)
T cd06394         140 ICAKAE---------CLLRLEELLRQFLISK--ETLSVRML----DDSRDPTPLLKEIRDDKTATIII  192 (333)
T ss_pred             EEeCcH---------HHHHHHHHHHhhcccC--CceeeEEc----cCcccHHHHHHHHHhcCCCEEEE
Confidence            999874         6666666666543322  12222221    134579999999986 4566553

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act

>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor

Probab=99.74  E-value=3.6e-17  Score=132.15  Aligned_cols=128  Identities=11%  Similarity=0.218  Sum_probs=99.7

Q ss_pred             eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570           9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus         9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      +++.+||.||+||..+.++..++++|...+||+|++..+.   .  ...++.+++.|+   ++.|+++++++|+|+++.+
T Consensus        58 ~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~---~--~~~~~~l~l~P~---l~~Ai~diI~~~~Wr~~~~  129 (372)
T cd06387          58 SQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPT---D--ADVQFVIQMRPA---LKGAILSLLAHYKWEKFVY  129 (372)
T ss_pred             HHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCC---C--CCCceEEEEChh---HHHHHHHHHHhcCCCEEEE
Confidence            4788999999999999999999999999999999875431   1  223556899998   8999999999999999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-c-eEEEee
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-A-RIIKSL  156 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-a-RIii~~  156 (159)
                      ||+++         ++...++.|.+.+...+  ..+..+.+... .+.++++.+|+++++. . |||+.|
T Consensus       130 iYd~d---------~gl~~Lq~L~~~~~~~~--~~V~~~~v~~~-~~~~~~~~~l~el~~~~~r~iIld~  187 (372)
T cd06387         130 LYDTE---------RGFSILQAIMEAAVQNN--WQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDC  187 (372)
T ss_pred             EecCc---------hhHHHHHHHHHhhccCC--ceEEEEEeccC-CchHHHHHHHHHhccccceEEEEEC
Confidence            99654         37788999999887765  33444455432 2456889999999864 3 344444

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family

Probab=99.74  E-value=5.3e-17  Score=130.76  Aligned_cols=138  Identities=11%  Similarity=0.044  Sum_probs=93.1

Q ss_pred             eccce-eeEEEE-CCCCch--hHHHHHHHHhccCCcEEccccCC-CCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCC
Q psy8570           9 TGFVV-CVDAFL-GPVCDY--VIAPVARYSGVWGIPVLTAGGLV-ANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNW   83 (159)
Q Consensus         9 ~~~~~-~v~aii-Gp~~s~--~~~~va~~~~~~~iP~is~~~~~-~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W   83 (159)
                      +.+++ +|.|+| ||.++.  .+..++.+++.++||+|+..+.+ ..++++..+|+|+|+.|++..++.|+++|++||+|
T Consensus        56 ~ll~~~~V~aiIfgp~~~~~~~a~~~s~~~~~~~vP~is~~~~s~~~ls~~~~~p~flr~~Psd~~q~~Ai~~Ii~~f~W  135 (362)
T cd06378          56 DLLSTTKVHGVVFEDDTDQEAVAQILDFISAQTFLPILGIHGGSSMIMAAKDSGSTFLQFGPSIEQQAAVMLKIMEEYDW  135 (362)
T ss_pred             HHhcccceEEEEecCCCCccccchhhhhhhhceeccEEEecccccccccCCCCCceEEEeCCCHHHHHHHHHHHHHHCCC
Confidence            44544 599755 999987  34567777788999999986554 36678788999999999999999999999999999


Q ss_pred             cEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          84 TVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        84 ~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      ++|++||++++.        ....++.+.+.+.... ++......+.....+......+|+++++ .+||||+
T Consensus       136 ~~v~iV~~~~~g--------~~~~~~~l~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~lk~~~arViVl  199 (362)
T cd06378         136 HAFSVVTSRFPG--------YDDFVSAVRTTVDNSF-VGWELQSVLTLDMSDDDGDARTQRQLKKLESQVILL  199 (362)
T ss_pred             eEEEEEEEcCCC--------HHHHHHHHHHHHhhcc-cceeEEEEEeeccCCCcchHHHHHHHHhcCCCEEEE
Confidence            999999987641        1112333444333321 2221111122111122345677777774 6888765

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family

Probab=99.72  E-value=8.3e-17  Score=130.98  Aligned_cols=107  Identities=10%  Similarity=0.048  Sum_probs=83.5

Q ss_pred             eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccC-----------CCCCCCcccCCeeEEeeCChhhHHHHHHHH
Q psy8570           9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGL-----------VANFELKFEYPTLTRMMGSFSLVGQAVQSI   77 (159)
Q Consensus         9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~-----------~~~l~~~~~~~~~~r~~p~~~~~~~a~~~l   77 (159)
                      +++++||.|||||.++.++..++++|..++||+|+++..           .+.+ ...+|+  +++.|+ ..+++|+++|
T Consensus        57 ~l~~~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is~~~~~~~~~~~~~~~~p~~-~~~~~~--~~lrp~-~~~~~Ai~dl  132 (400)
T cd06392          57 DLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNSGGSPRTACHLNPSP-EGEEYT--LAARPP-VRLNDVMLKL  132 (400)
T ss_pred             HHHhcCeEEEECCCchhHHHHHHHHhccCcCCcEeecccccccccccccCCCCc-CcCcee--EEecCc-hHHHHHHHHH
Confidence            467899999999999999999999999999999997542           1222 223566  666665 4688899999


Q ss_pred             HHHcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeee
Q psy8570          78 LKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFD  130 (159)
Q Consensus        78 l~~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~  130 (159)
                      ++||+|++|++||+ +++        +...+++|.+.+.+.+  ..+....++
T Consensus       133 V~~~~W~~v~~iYD-~d~--------gl~~lq~L~~~~~~~~--~~I~~~~v~  174 (400)
T cd06392         133 VTELRWQKFIVFYD-SEY--------DIRGLQSFLDQASRLG--LDVSLQKVD  174 (400)
T ss_pred             HHhCCCcEEEEEEE-Ccc--------cHHHHHHHHHHHhhcC--ceEEEEEcc
Confidence            99999999999995 442        7788999999888875  344444443

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel

>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor

Probab=99.72  E-value=2e-16  Score=127.51  Aligned_cols=132  Identities=12%  Similarity=0.220  Sum_probs=100.0

Q ss_pred             eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570           9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus         9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      ++++++|.|||||.|+.++..++.+|..++||+|+++++.+.+.  ..+++++|+.|+   +..++++++++|+|+++++
T Consensus        57 ~ll~~~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~~~~~~~l~--~~~~~~fr~~p~---~~~a~~~~~~~~~wk~vai  131 (382)
T cd06380          57 SQLSRGVFAIFGSYDKSSVNTLTSYSDALHVPFITPSFPTNDLD--DGNQFVLQMRPS---LIQALVDLIEHYGWRKVVY  131 (382)
T ss_pred             HHHhcCcEEEEecCcHHHHHHHHHHHhcCCCCeEecCCCcccCC--CCCcEEEEeccc---hhHHHHHHHHhcCCeEEEE
Confidence            35567999999999999999999999999999999998877663  357888999886   3568999999999999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      ||++++         +...++.+.+.+++.+....+....+... .+..++...|+++|+ ..|+||+
T Consensus       132 i~~~~~---------~~~~~~~~~~~~~~~g~~i~v~~~~~~~~-~~~~d~~~~L~~ik~~~~~~iil  189 (382)
T cd06380         132 LYDSDR---------GLLRLQQLLDYLREKDNKWQVTARRVDNV-TDEEEFLRLLEDLDRRKEKRIVL  189 (382)
T ss_pred             EECCCc---------chHHHHHHHHHHhccCCceEEEEEEecCC-CcHHHHHHHHHHhhcccceEEEE
Confidence            997653         34567788887877642011222233221 134689999999996 4676665

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita

>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family

Probab=99.68  E-value=6.6e-16  Score=125.91  Aligned_cols=103  Identities=9%  Similarity=0.091  Sum_probs=79.9

Q ss_pred             eccceeeEEEECCCCchhHHHHHHHHhccCCcEEcc----ccCC-----CCCC-CcccCCeeEEeeCChhhHHHHHHHHH
Q psy8570           9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTA----GGLV-----ANFE-LKFEYPTLTRMMGSFSLVGQAVQSIL   78 (159)
Q Consensus         9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~----~~~~-----~~l~-~~~~~~~~~r~~p~~~~~~~a~~~ll   78 (159)
                      ++++++|.|||||.....+..++++|..|++|+|+.    ++++     +.++ ++..||+++|  |+ ..+++|+++|+
T Consensus        57 ~l~~~gv~ai~Gp~~~~~~~~v~~~~~~~~vP~i~~~~~~~~t~~~~~~~~~~~~~~~y~~~~r--p~-~~~~~ai~~li  133 (400)
T cd06391          57 ELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVR--PP-VYLNDVILRVV  133 (400)
T ss_pred             HHHhCCeEEEECCCcchHHHHHHHHhccCcCCeEEeecccccCccccCCCCCCCCcccceEEec--Ch-HHHHHHHHHHH
Confidence            456889999999977777789999999999999973    3322     2233 3567887777  54 67899999999


Q ss_pred             HHcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcc
Q psy8570          79 KNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDM  124 (159)
Q Consensus        79 ~~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~  124 (159)
                      ++|||++++++++++.         +...++.|.+.+.+.+ +++.
T Consensus       134 ~~f~W~~v~i~~d~~~---------~~~~l~~l~~~~~~~~-i~I~  169 (400)
T cd06391         134 TEYAWQKFIIFYDTDY---------DIRGIQEFLDKVSQQG-MDVA  169 (400)
T ss_pred             HHcCCcEEEEEEeCCc---------cHHHHHHHHHHHHHcC-CeEE
Confidence            9999999998766542         4678888998888875 4544

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a

>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family

Probab=99.67  E-value=2.5e-15  Score=121.33  Aligned_cols=136  Identities=10%  Similarity=0.026  Sum_probs=96.1

Q ss_pred             cceeeEEEECC-CCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570          11 FVVCVDAFLGP-VCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM   89 (159)
Q Consensus        11 ~~~~v~aiiGp-~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i   89 (159)
                      +.+||.||||| ..+.++..+..+|+.++||+|++........+...+...+++.|+..+++.|+++++++|||+++++|
T Consensus        78 l~~GV~AIfg~p~s~~~~~~v~sic~~l~IP~I~~~~~~~~~~~~~~~~l~L~l~P~~~~l~~a~~~ll~~~~W~~f~~i  157 (382)
T cd06377          78 VVQGVSALLAFPQTRPELVQLDFVSAALEIPVVSIVRREFPRGSQNPFHLQMSWASPLSTLLDVLLSVLQRNGWEDVSLV  157 (382)
T ss_pred             hhCCeEEEEecCCCHHHHHHHHHHhcCCCCCEEEecCCcccccCCCceeEEEEecCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            58999999995 87788899999999999999998554322322233444467899999999999999999999999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccC---CChHHH-HHHHHHHhcCc-eEEEeeeC
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET---VTPEKL-KEQLIAITKRA-RIIKSLDA  158 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~---~~~~~~-~~~L~~~~~~a-RIii~~~~  158 (159)
                      |+++.         +...++.|.+.....+   ....+.+....   .+..++ +++|+++++.. .-.|++|+
T Consensus       158 y~~~~---------gl~~lq~l~~~~~~~~---~~~~i~v~~~~~~~~d~~~~~~~~L~~i~~~~~~~~ill~c  219 (382)
T cd06377         158 LCRER---------DPTGLLLLWTNHARFH---LGSVLNLSRNDPSTADLLDFLRAQLELLKDPPGPAVVLFGC  219 (382)
T ss_pred             EecCc---------CHHHHHHHHHHhcccc---cCceEEEEeccCccCChhHHHHHHHHHhhcccCceEEEEEC
Confidence            99874         5556677766555432   12233332211   134556 89999998643 33344443

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor

Probab=99.66  E-value=1.5e-15  Score=122.70  Aligned_cols=120  Identities=12%  Similarity=0.168  Sum_probs=93.3

Q ss_pred             eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570           9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus         9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      +++++||.|||||.++.++..++.+|...+||+|+++.+.    + ..+.+.+++.|+   +..++++++++|+|+++++
T Consensus        58 ~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~----~-~~~~f~i~~~p~---~~~a~~~~i~~~~wk~vai  129 (371)
T cd06388          58 SQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPT----E-GESQFVLQLRPS---LRGALLSLLDHYEWNRFVF  129 (371)
T ss_pred             HHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccc----c-CCCceEEEeChh---hhhHHHHHHHhcCceEEEE
Confidence            5788999999999999999999999999999999976541    1 245556777887   5789999999999999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR  149 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~  149 (159)
                      +|++++         ++..++.+.+.+++.+ ..+ .......  .+..+++.+|+++++.
T Consensus       130 iYd~~~---------~~~~lq~l~~~~~~~g-~~v-~~~~~~~--~~~~d~~~~L~~ik~~  177 (371)
T cd06388         130 LYDTDR---------GYSILQAIMEKAGQNG-WQV-SAICVEN--FNDASYRRLLEDLDRR  177 (371)
T ss_pred             EecCCc---------cHHHHHHHHHhhHhcC-Cee-eeEEecc--CCcHHHHHHHHHhccc
Confidence            997553         5677889988888765 222 2222222  1245899999999864

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors

Probab=99.66  E-value=2.2e-15  Score=118.95  Aligned_cols=125  Identities=14%  Similarity=0.167  Sum_probs=94.4

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..++|.+||||.||..+..++.++..+++|+|++++..+.++   .+++++|+.|++..++.++++++++|+|+++++++
T Consensus        60 i~~~V~aiiG~~~S~~~~av~~~~~~~~vP~Is~~~~~~~~~---~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vavl~  136 (327)
T cd06382          60 LQQGVAAIFGPSSSEASSIVQSICDAKEIPHIQTRWDPEPKS---NRQFTINLYPSNADLSRAYADIVKSFNWKSFTIIY  136 (327)
T ss_pred             hhcCcEEEECCCChhHHHHHHHHHhccCCCceeccCCcCccc---cccceEEeCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence            445999999999999999999999999999999887766655   34677999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCC--cceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSN--DMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~--~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      ++++         +.   ..+.+.+++.+ ..  .+....+..   .. ++...|++++. .+++||+
T Consensus       137 ~~~~---------~~---~~l~~~~~~~~-~~g~~v~~~~~~~---~~-d~~~~l~~i~~~~~d~vv~  187 (327)
T cd06382         137 ESAE---------GL---LRLQELLQAFG-ISGITITVRQLDD---DL-DYRPLLKEIKNSGDNRIII  187 (327)
T ss_pred             cChH---------HH---HHHHHHHHhhc-cCCCeEEEEEccC---Cc-cHHHHHHHHHhcCceEEEE
Confidence            8763         32   33444444332 11  223333432   23 89999999986 4665544

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri

>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor

Probab=99.66  E-value=1.9e-15  Score=122.04  Aligned_cols=127  Identities=12%  Similarity=0.181  Sum_probs=97.8

Q ss_pred             eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570           9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus         9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      +++++||.|||||..+.++..++.+|...+||+|++.++.    + ..+++.+++.|+   +..++++++++|+|+++++
T Consensus        52 ~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~----~-~~~~f~~~~~p~---~~~ai~d~i~~~~wk~vai  123 (370)
T cd06389          52 SQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT----D-GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAY  123 (370)
T ss_pred             HHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCC----C-CCCceEEEecch---hhhHHHHHHHhcCCcEEEE
Confidence            5788999999999999999999999999999999876542    2 256778899988   6899999999999999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeec--cCCChHHHHHHHHHHhc-CceEEE
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE--ETVTPEKLKEQLIAITK-RARIIK  154 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~--~~~~~~~~~~~L~~~~~-~aRIii  154 (159)
                      +|+++ +        +...++.+.+.+++.+ ..++ ......  ......+++.+|++++. ..|+||
T Consensus       124 lYdsd-~--------gl~~lq~l~~~~~~~g-~~V~-~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Ii  181 (370)
T cd06389         124 LYDSD-R--------GLSTLQAVLDSAAEKK-WQVT-AINVGNINNDRKDEAYRSLFQDLENKKERRVI  181 (370)
T ss_pred             EecCc-h--------HHHHHHHHHHhhccCC-ceEE-EEEeecCCCccchHHHHHHHHHhccccceEEE
Confidence            99743 3        7778899998888765 2222 112111  11234589999999985 445443

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors

Probab=99.61  E-value=2.1e-14  Score=112.98  Aligned_cols=127  Identities=14%  Similarity=0.251  Sum_probs=95.4

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..+++.++|||.||..+..++.++..+++|+|++++.++.+..  .+.  +++.|+...++.++++++++|+|+++++++
T Consensus        59 i~~~V~aiiG~~~S~~~~av~~i~~~~~ip~is~~~~~~~~~~--~~~--~~~~~~~~~~~~a~~~~~~~~~w~~vaii~  134 (324)
T cd06368          59 LSQGVAAIFGPSSSSSANTVQSICDALEIPHITTSWSPNPKPR--QFT--INLYPSMRDLSDALLDLIKYFGWRKFVYIY  134 (324)
T ss_pred             HhcCcEEEECCCCHHHHHHHHHHHhccCCCcEEecCCcCCCCC--cce--EEecCCHHHHHHHHHHHHHhcCCCEEEEEE
Confidence            3468999999999999999999999999999999988776652  234  555677778999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      +++.         +...++.+.+.+.+.+ ..++ ...+..   ..+++++.|.+++. .+++||+
T Consensus       135 ~~~~---------~~~~l~~~~~~~~~~g-~~v~-~~~~~~---~~~d~~~~l~~i~~~~~d~Vi~  186 (324)
T cd06368         135 DSDE---------GLLRLQELLDALSPKG-IQVT-VRRLDD---DTDMYRPLLKEIKREKERRIIL  186 (324)
T ss_pred             CCcH---------hHHHHHHHHHhhccCC-ceEE-EEEecC---CchHHHHHHHHHhhccCceEEE
Confidence            7653         4456677777776654 2333 223332   22379999999986 4555543

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors

>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.57  E-value=4.5e-14  Score=111.01  Aligned_cols=132  Identities=11%  Similarity=0.091  Sum_probs=107.9

Q ss_pred             eeeEEEECCCCchhHHHH-HHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPV-ARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~v-a~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ++|.+|+||.||..+..+ +.++...++|+|++++.++.+.++..+++++|+.|++..++.++++++..++|+++++|+.
T Consensus        66 ~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~  145 (312)
T cd06346          66 DGVPGIVGAACSGVTIAALTSVAVPNGVVMISPSSTSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGYKSVATTYI  145 (312)
T ss_pred             cCCCEEEccccchhhHhhhhhhhccCCcEEEecCCCCccceecCCCceEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            589999999999999999 8999999999999998888888776678999999999999999999999999999999998


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++++        +....+.+.+.+++.+ +.++....++.   ...++...+.++++ ..++|+++
T Consensus       146 ~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~l~~~~pd~v~~~  199 (312)
T cd06346         146 NNDY--------GVGLADAFTKAFEALG-GTVTNVVAHEE---GKSSYSSEVAAAAAGGPDALVVI  199 (312)
T ss_pred             cCch--------hhHHHHHHHHHHHHcC-CEEEEEEeeCC---CCCCHHHHHHHHHhcCCCEEEEe
Confidence            7764        3445677777887765 45555555543   34578888888875 56766554

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.54  E-value=9.2e-14  Score=110.23  Aligned_cols=131  Identities=10%  Similarity=0.101  Sum_probs=104.6

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC--CcEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN--WTVAGFMF   90 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~--W~~v~~i~   90 (159)
                      +++.+|+||.|+..+..++.++..+++|+|++++..+.+. +..+++++|+.|+...+..+++.++++++  |+++++++
T Consensus        70 ~~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  148 (345)
T cd06338          70 DKVDFLLGPYSSGLTLAAAPVAEKYGVPMVAGSGASDSIF-AQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILY  148 (345)
T ss_pred             cCccEEecCCcchhHHHHHHHHHHhCCcEEecCCCCchHh-hcCCceEEEecCchHHHHHHHHHHHHhcCCCCceEEEEe
Confidence            4899999999999999999999999999999988776665 45689999999999999999999999998  99999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      .++.+        +....+.+.+.+++.+ +.++....++.   ...++...++++++ .+++|+++
T Consensus       149 ~~~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~---~~~d~~~~v~~l~~~~~d~i~~~  203 (345)
T cd06338         149 ADDPF--------SQDVAEGAREKAEAAG-LEVVYDETYPP---GTADLSPLISKAKAAGPDAVVVA  203 (345)
T ss_pred             cCCcc--------cHHHHHHHHHHHHHcC-CEEEEEeccCC---CccchHHHHHHHHhcCCCEEEEC
Confidence            87754        3345677777777765 45444444543   33578888888875 46777654

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.

>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)

Probab=99.53  E-value=9.2e-14  Score=109.48  Aligned_cols=132  Identities=11%  Similarity=0.065  Sum_probs=102.5

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFM   89 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i   89 (159)
                      ..+++.+|+||.|+..+..++.++..+++|+|++++....+.++ .|++++|+.|++..++.++++++ ++++|++++++
T Consensus        63 i~~~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v  141 (334)
T cd06342          63 VDDGVVGVVGHLNSGVTIPASPIYADAGIVMISPAATNPKLTER-GYKNVFRVVARDDQQGPAAAKYAVETLKAKKVAII  141 (334)
T ss_pred             HhCCceEEECCCccHhHHHhHHHHHhCCCeEEecCCCCchhhcC-CCceEEeccCCcHHHHHHHHHHHHHhcCCCEEEEE
Confidence            34489999999999999999999999999999988776555543 68999999999999999999975 58999999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      +.++.+        +....+.+.+.++..+ +.++....++.   ...++...++++++ ..++|+.
T Consensus       142 ~~~~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~---~~~d~~~~l~~i~~~~~~~vi~  196 (334)
T cd06342         142 DDKTAY--------GQGLADEFKKALKAAG-GKVVAREGTTD---GATDFSAILTKIKAANPDAVFF  196 (334)
T ss_pred             eCCcch--------hhHHHHHHHHHHHHcC-CEEEEEecCCC---CCccHHHHHHHHHhcCCCEEEE
Confidence            987753        4445677777777664 34444444433   34678888888876 4666654

This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.

>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems

Probab=99.52  E-value=1.8e-13  Score=104.85  Aligned_cols=134  Identities=19%  Similarity=0.253  Sum_probs=104.6

Q ss_pred             cce-eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570          11 FVV-CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM   89 (159)
Q Consensus        11 ~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i   89 (159)
                      ... ++.++|||.|+..+..++.++..+++|+|++++....+.++..+++++|+.|+...++..+++++++++|++++++
T Consensus        63 ~~~~~v~~iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv  142 (299)
T cd04509          63 CQQEGVDALVGPVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAIL  142 (299)
T ss_pred             hcccCceEEEcCCCcHHHHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEE
Confidence            344 8999999999988888999999999999999887777766667899999999999999999999999999999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.++..        +....+.+.+.+++.+ +..+....+..   ..+++.++++++++ ..++|+++
T Consensus       143 ~~~~~~--------~~~~~~~~~~~~~~~g-~~i~~~~~~~~---~~~~~~~~~~~l~~~~~~~v~~~  198 (299)
T cd04509         143 YDDDSY--------GRGLLEAFKAAFKKKG-GTVVGEEYYPL---GTTDFTSLLQKLKAAKPDVIVLC  198 (299)
T ss_pred             ecCchH--------HHHHHHHHHHHHHHcC-CEEEEEecCCC---CCccHHHHHHHHHhcCCCEEEEc
Confidence            987642        5556777778887764 33333333332   22467778887765 46777665

This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th

>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.51  E-value=3.2e-13  Score=107.38  Aligned_cols=131  Identities=16%  Similarity=0.152  Sum_probs=102.6

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCC---CcccCCeeEEeeCChhhHHHHHHHHHHH-----cCCc
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFE---LKFEYPTLTRMMGSFSLVGQAVQSILKN-----FNWT   84 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~---~~~~~~~~~r~~p~~~~~~~a~~~ll~~-----f~W~   84 (159)
                      +++.+++||.|+..+..++.++..+++|+|++++..+.+.   ++..+++++|+.|++..+..+++.++.+     ++|+
T Consensus        66 ~~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~t~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (344)
T cd06345          66 DKVDAVVGGYSSEVVLALQDVAAENKVPFIVTGAASPEITTADDYETYKYVFRAGPTNSSYAQSVADALKETLVDKHGFK  145 (344)
T ss_pred             CCceEEECCcchHHHHHHHHHHHHcCCcEEeccCCCCcccccccccCCceEEecCCCcHHHHHHHHHHHHHhhcccCCCc
Confidence            4899999999999999999999999999999887766665   3567899999999999999999998876     8999


Q ss_pred             EEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          85 VAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        85 ~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      +|++++.++.+        +....+.+.+.+++.+ +.++....+..   +..++...+.+++. ..++|++
T Consensus       146 ~va~l~~~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~l~~~~~d~v~~  205 (344)
T cd06345         146 TAAIVAEDAAW--------GKGIDAGIKALLPEAG-LEVVSVERFSP---DTTDFTPILQQIKAADPDVIIA  205 (344)
T ss_pred             eEEEEecCchh--------hhHHHHHHHHHHHHcC-CeEEEEEecCC---CCCchHHHHHHHHhcCCCEEEE
Confidence            99999988764        3345667777777764 45555555543   24568888888875 4555444

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2

Probab=99.50  E-value=5.7e-13  Score=107.45  Aligned_cols=98  Identities=7%  Similarity=0.038  Sum_probs=75.5

Q ss_pred             ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCC--------CCC--CcccCCeeEEeeCChhhHHHHHHHHHH
Q psy8570          10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVA--------NFE--LKFEYPTLTRMMGSFSLVGQAVQSILK   79 (159)
Q Consensus        10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~--------~l~--~~~~~~~~~r~~p~~~~~~~a~~~ll~   79 (159)
                      ++.++|.|||||.++..+..++.+|...+||+|++.+...        .+.  ....|.  +++.|+. .+..++.++++
T Consensus        58 Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~--f~~rp~~-~~~~ai~~lv~  134 (363)
T cd06381          58 LMNQGILALVTSTGCASAIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYT--LALRPPV-RLNDVMLRLVT  134 (363)
T ss_pred             HHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeE--EEEeccH-HHHHHHHHHHH
Confidence            4556999999999999999999999999999998654221        111  123354  4555764 68999999999


Q ss_pred             HcCCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570          80 NFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPS  119 (159)
Q Consensus        80 ~f~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  119 (159)
                      +|+|++++++|++++         +...++++.+.++..+
T Consensus       135 ~~~wkkvavly~~d~---------g~~~l~~~~~~~~~~g  165 (363)
T cd06381         135 EWRWQKFVYFYDNDY---------DIRGLQEFLDQLSRQG  165 (363)
T ss_pred             hCCCeEEEEEEECCc---------hHHHHHHHHHHHHhcC
Confidence            999999999999764         4556778888777764

This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G

>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.45  E-value=5e-13  Score=106.57  Aligned_cols=134  Identities=11%  Similarity=0.143  Sum_probs=104.7

Q ss_pred             ccce-eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC------
Q psy8570          10 GFVV-CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN------   82 (159)
Q Consensus        10 ~~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~------   82 (159)
                      ...+ ++.+|+||.++..+..++.++...++|+|++++.++.+.. ..+++++|+.|++..+..+++.++.+++      
T Consensus        65 li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~~~~  143 (347)
T cd06340          65 LITEEGVVALVGAYQSAVTLAASQVAERYGVPFVVDGAVSDSITE-RGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKP  143 (347)
T ss_pred             HhccCCceEEecccchHhHHHHHHHHHHhCCCEEeccccchHHhh-cCCceEEecCCChHHHHHHHHHHHHHhhHhcCCC
Confidence            3444 8999999999999999999999999999998877766653 3578999999999999999999999885      


Q ss_pred             CcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          83 WTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        83 W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      |+++++++.++.+        +....+.+.+.+++.+ ..++....++.   ...++...++++++ .+++|++.
T Consensus       144 ~~~v~~l~~~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~i~~l~~~~~d~v~~~  206 (347)
T cd06340         144 LKTVALVHEDTEF--------GTSVAEAIKKFAKERG-FEIVEDISYPA---NARDLTSEVLKLKAANPDAILPA  206 (347)
T ss_pred             CceEEEEecCchH--------hHHHHHHHHHHHHHcC-CEEEEeeccCC---CCcchHHHHHHHHhcCCCEEEEc
Confidence            4899999987754        4456777777888775 45555555543   24578888888875 56766554

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.44  E-value=2.5e-12  Score=101.19  Aligned_cols=133  Identities=14%  Similarity=0.087  Sum_probs=99.9

Q ss_pred             ccce-eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEE
Q psy8570          10 GFVV-CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAG   87 (159)
Q Consensus        10 ~~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~   87 (159)
                      ...+ ++.+|+||.++..+..++.++..++||+|++++..+.+.++.  ++++|+.|++..++.++++.+ ++++|++++
T Consensus        62 li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~~~~~~~~~~~~--~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~  139 (334)
T cd06347          62 LIDQDKVVAIIGPVTSGATLAAGPIAEDAKVPMITPSATNPKVTQGK--DYVFRVCFIDPFQGTVMAKFATENLKAKKAA  139 (334)
T ss_pred             HhcccCeEEEEcCCccHhHHHhHHHHHHCCCeEEcCCCCCCCcccCC--CeEEEeeCCcHHHHHHHHHHHHHhcCCcEEE
Confidence            3444 999999999999999999999999999999988766665543  368999999888899888876 678999999


Q ss_pred             EEEEeC-CCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          88 FMFNNY-GQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        88 ~i~~~~-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +|+.++ ++        +....+.+.+.+++.+ ++++....+..   ...++...++++++ .+++|++.
T Consensus       140 ii~~~~~~~--------~~~~~~~~~~~~~~~g-~~v~~~~~~~~---~~~d~~~~~~~~~~~~~d~i~~~  198 (334)
T cd06347         140 VLYDNSSDY--------SKGLAKAFKEAFKKLG-GEIVAEETFNA---GDTDFSAQLTKIKAKNPDVIFLP  198 (334)
T ss_pred             EEEeCCCch--------hHHHHHHHHHHHHHcC-CEEEEEEEecC---CCCcHHHHHHHHHhcCCCEEEEc
Confidence            999875 32        4445677777777764 45554445543   23467777777764 56666554

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>KOG1055|consensus

Probab=99.40  E-value=1.4e-13  Score=116.93  Aligned_cols=128  Identities=20%  Similarity=0.284  Sum_probs=106.0

Q ss_pred             eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEeC
Q psy8570          14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNNY   93 (159)
Q Consensus        14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~~   93 (159)
                      ....++|. |+..+..+|.-+..||.-+.+|+++++.++|++.||+|+|+.|+........+.++++|+|++++.+++..
T Consensus       113 ~k~mll~G-Cs~v~~~iaea~~~w~l~~lsy~~ssp~ls~r~rfp~~frt~PS~~~~np~rl~l~~~~~w~rvgt~~q~e  191 (865)
T KOG1055|consen  113 NKLMLLGG-CSSVTTLIAEAAKMWNLIVLSYGASSPALSNRKRFPTFFRTHPSANAHNPTRIKLLKKFGWKRVATLQQTE  191 (865)
T ss_pred             chheeccC-CCCcchHHHhhccccceeeecccCCCccccchhhcchhhhcCCccccCCcceeeechhcCcceeeeeeeeh
Confidence            34577787 99999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHh-cCceEEEeee
Q psy8570          94 GQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAIT-KRARIIKSLD  157 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~-~~aRIii~~~  157 (159)
                      +.        .....+.|...+...+ +.++....|..   ++   ...++.++ +++|||+.+.
T Consensus       192 ~~--------f~~~~~dl~~~~~~~~-ieiv~~qsf~~---dp---~~~vk~l~~~D~RiI~g~f  241 (865)
T KOG1055|consen  192 EV--------FSSTLNDLEARLKEAG-IEIVFRQSFSS---DP---ADSVKNLKRQDARIIVGLF  241 (865)
T ss_pred             hh--------hcchHHHHHHhhhccc-cEEEEeecccc---CH---HHHHhhccccchhheeccc
Confidence            64        4557788888777764 45555666643   23   34556665 5789998753

>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.32  E-value=3.3e-11  Score=96.35  Aligned_cols=132  Identities=11%  Similarity=0.043  Sum_probs=102.9

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHH-HHHcCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSI-LKNFNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~l-l~~f~W~~v~~i~   90 (159)
                      .+++.+++||.++..+..++.++...++|+|+..+....+.++..+++++|+.|++..+..++++. +++++|+++++|+
T Consensus        72 ~~~v~avvG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~ii~  151 (362)
T cd06343          72 SDEVFAMVGGLGTPTNLAVQKYLNEKKVPQLFPASGASKWNDPKPFPWTFGWQPSYQDEARIYAKYLVEEKPNAKIAVLY  151 (362)
T ss_pred             hcCeEEEEecCCcHHHHHhHHHHHhcCCceEecccccHhhhCCCCCCceEecCCChHHHHHHHHHHHHHhCCCceEEEEE
Confidence            368999999999999999999999999999998766666666667889999999999999999994 6689999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      .++.+        +....+.+.+.+++.+ +.++....+..   ...++...+.+++. ...+|++
T Consensus       152 ~~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~i~~~~~d~v~~  205 (362)
T cd06343         152 QNDDF--------GKDYLKGLKDGLGDAG-LEIVAETSYEV---TEPDFDSQVAKLKAAGADVVVL  205 (362)
T ss_pred             eccHH--------HHHHHHHHHHHHHHcC-CeEEEEeeecC---CCccHHHHHHHHHhcCCCEEEE
Confidence            87754        4456777888887765 45555555543   34567777777764 4555544

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins

Probab=99.31  E-value=3e-11  Score=95.93  Aligned_cols=133  Identities=11%  Similarity=0.013  Sum_probs=100.2

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC--CcEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN--WTVAGFMF   90 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~--W~~v~~i~   90 (159)
                      +++.+|+||.++..+..++.++...++|+|++.+.++.+.++..+++++|+.|++..+..+++++++.++  |+++++++
T Consensus        66 ~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  145 (346)
T cd06330          66 EGVDMLIGLISSGVALAVAPVAEELKVFFIATDPGTPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLDKKAKTWATIN  145 (346)
T ss_pred             cCCcEEEcccchHHHHHHHHHHHHcCCeEEEcCCCCcccccCCCCCceEEecCChHHHHHHHHHHHHHhCcCccEEEEEC
Confidence            4899999999999999999999999999999887777666655789999999999999999999999885  99999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCC-CCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPS-GSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      .++.+        +....+.+.+.+++.+ ++.++....++   ....++...+.+++. ..++|++.
T Consensus       146 ~~~~~--------g~~~~~~~~~~~~~~g~~~~~v~~~~~~---~~~~d~~~~v~~i~~~~~d~ii~~  202 (346)
T cd06330         146 PDYAY--------GQDAWADFKAALKRLRPDVEVVSEQWPK---LGAPDYGSEITALLAAKPDAIFSS  202 (346)
T ss_pred             CchHH--------HHHHHHHHHHHHHHhCCCCeecccccCC---CCCcccHHHHHHHHhcCCCEEEEe
Confidence            77643        4456677877777653 11222211111   134567777777764 56665543

Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.

>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.31  E-value=8.1e-11  Score=93.86  Aligned_cols=131  Identities=14%  Similarity=0.067  Sum_probs=100.5

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCc-ccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFMF   90 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~-~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i~   90 (159)
                      ++|.+++||.++..+..++.++...++|+|++.+....+.+. ..+++++|+.|++..++.+++..+ +..+|++|+++|
T Consensus        66 ~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~~Fr~~~~~~~~~~~~a~~~~~~~~~~~v~ii~  145 (347)
T cd06335          66 EKVVAVLGGLHTPVALANLEFIQQNKIPLIGPWAAGTPITRNGAPPNYIFRVSADDSIQAPFLVDEAVKRGGFKKVALLL  145 (347)
T ss_pred             CCeEEEEcCCCCHHHHhhhHHHHhcCCcEEecCCCCcccccCCCCCCCEEEeccChHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            489999999999999889999999999999987766555442 356789999999999999999876 567799999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      .++.+        +....+.+.+.+++.+ +.++....++.   ...++...++++++ ...+|++
T Consensus       146 ~~~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~s~~i~~i~~~~~d~v~~  199 (347)
T cd06335         146 DNTGW--------GRSNRKDLTAALAARG-LKPVAVEWFNW---GDKDMTAQLLRAKAAGADAIII  199 (347)
T ss_pred             ccCch--------hhhHHHHHHHHHHHcC-CeeEEEeeecC---CCccHHHHHHHHHhCCCCEEEE
Confidence            98764        4456777888888775 45554455543   34578888888875 4555544

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins

Probab=99.26  E-value=4.1e-11  Score=95.34  Aligned_cols=133  Identities=9%  Similarity=-0.043  Sum_probs=99.7

Q ss_pred             cceeeEEEECCCCchhHHHH-------HHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC-
Q psy8570          11 FVVCVDAFLGPVCDYVIAPV-------ARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN-   82 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~v-------a~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~-   82 (159)
                      ..+++.+++||.++..+..+       +.++..+++|+|++++..+.+.+....++++|+.|++..++.++++.+...+ 
T Consensus        63 v~~~v~aiiG~~~s~~~~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~  142 (342)
T cd06329          63 IDDGVRLVVQGNSSSVALALTEAVRKHNQRNPGKEVLYLNYASVAPALTGEKCSFWHFRTDANTDMKMEALASYIKKQPD  142 (342)
T ss_pred             HHhCCeEEEcccchHHHHHhhhhhhhhhhhhccCCeEEEecCCCCchhhhccCcceEEEecCChHHHHHHHHHHHHhccc
Confidence            44589999999999988888       7788889999999887766666644578899999999999999999998876 


Q ss_pred             CcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcC--CCCCCcceeeeeeccCCCh-HHHHHHHHHHhc-CceEEEe
Q psy8570          83 WTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITS--PSGSNDMKLESFDEETVTP-EKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        83 W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~~~~~~~~f~~~~~~~-~~~~~~L~~~~~-~aRIii~  155 (159)
                      |+++++++.++.+        +....+.+.+.+++  .+ ..++....++.   .. .++..++.+++. ...+|++
T Consensus       143 ~k~v~i~~~~~~~--------g~~~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~~d~~~~i~~l~~~~~d~v~~  207 (342)
T cd06329         143 GKKVYLINQDYSW--------GQDVAAAFKAMLAAKRPD-IQIVGEDLHPL---GKVKDFSPYVAKIKASGADTVIT  207 (342)
T ss_pred             CceEEEEeCChHH--------HHHHHHHHHHHHHhhcCC-cEEeceeccCC---CCCCchHHHHHHHHHcCCCEEEE
Confidence            9999999987654        44567778888876  54 33433333332   23 567777777765 3444443

Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.

>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.26  E-value=8.3e-11  Score=93.81  Aligned_cols=130  Identities=13%  Similarity=0.059  Sum_probs=101.7

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.+++||.++..+.. +.++...++|+|++++.++.+.. ..+++++|+.|+...+..+++.+++..+|+++++++.+
T Consensus        70 ~~v~~iiG~~~s~~~~~-~~~~~~~~ip~i~~~~~~~~~~~-~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~v~il~~d  147 (347)
T cd06336          70 DGVKFILGPIGGGITAA-QQITERNKVLLLTAYSSDLSIDT-AGNPLTFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPN  147 (347)
T ss_pred             cCceEEEeCCCCchhhh-hhhhhhcCceEEeccCCcccccc-cCCceEEEecCCchhHHHHHHHHHhhcCCceEEEEccC
Confidence            38999999999988877 89999999999998887776653 34688999999999999999999988999999999987


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.+        +....+.+.+.+++.+ ..++....++.   ...|+...+.++++ .+++|+++
T Consensus       148 ~~~--------g~~~~~~~~~~l~~~G-~~vv~~~~~~~---~~~D~s~~i~~i~~~~~d~v~~~  200 (347)
T cd06336         148 DAY--------GQPWVAAYKAAWEAAG-GKVVSEEPYDP---GTTDFSPIVTKLLAEKPDVIFLG  200 (347)
T ss_pred             Cch--------hHHHHHHHHHHHHHcC-CEEeeecccCC---CCcchHHHHHHHHhcCCCEEEEc
Confidence            754        4556777778887765 34444444433   34678888888874 56776543

This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.25  E-value=1.8e-10  Score=91.43  Aligned_cols=130  Identities=15%  Similarity=0.146  Sum_probs=94.7

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhH-HHHHHHHHHHc-CCcEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLV-GQAVQSILKNF-NWTVAGFMF   90 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~-~~a~~~ll~~f-~W~~v~~i~   90 (159)
                      +++.+|+||.++..+..+..++...++|+|++++....+..  .+++++|+.+++..+ ..++..+++++ +|++++++|
T Consensus        66 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~--~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  143 (344)
T cd06348          66 DRVLAIIGPTLSQQAFAADPIAERAGVPVVGPSNTAKGIPE--IGPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFY  143 (344)
T ss_pred             cCceEEECCCCcHHHHhhhHHHHhCCCCEEeccCCCCCcCC--CCCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            48999999999998888889999999999998776554432  467889998766554 45556778888 999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      .+++.       .+....+.+.+.+++.+ +.++....+..   +..++...+.++++ .+++|++
T Consensus       144 ~~~~~-------~g~~~~~~~~~~~~~~g-~~v~~~~~~~~---~~~d~~~~v~~i~~~~~d~vi~  198 (344)
T cd06348         144 AQDDA-------FSVSETEIFQKALRDQG-LNLVTVQTFQT---GDTDFQAQITAVLNSKPDLIVI  198 (344)
T ss_pred             eCCch-------HHHHHHHHHHHHHHHcC-CEEEEEEeeCC---CCCCHHHHHHHHHhcCCCEEEE
Confidence            86541       14556778888888765 35544445543   34578888888875 4555544

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family

Probab=99.25  E-value=1.2e-10  Score=92.31  Aligned_cols=133  Identities=11%  Similarity=-0.007  Sum_probs=103.8

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.+++||.++..+..++.++...++|+|++++..+.+.+...+|+++|+.|++..++.++++.+..-+|+++++++.+
T Consensus        65 ~~V~aviG~~~s~~~~a~~~~~~~~~vp~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  144 (334)
T cd06327          65 DGVDMIVGGPNSAVALAVQEVAREKKKIYIVTGAGSDDLTGKDCSPYTFHWAYDTYMLANGTAPALVKAGGKKWFFLTAD  144 (334)
T ss_pred             cCceEEECCccHHHHHHHHHHHHHhCceEEecCCCccccccCCCCCceEEccCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            48999999999999999999999999999998887777776555789999999999999999987665568999999987


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEeee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSLD  157 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~~  157 (159)
                      +.+        +....+.+.+.+++.+ ..++....+..   ...++...+++++. ..++|++..
T Consensus       145 ~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~l~~~~~d~v~~~~  198 (334)
T cd06327         145 YAF--------GHSLERDARKVVKANG-GKVVGSVRHPL---GTSDFSSYLLQAQASGADVLVLAN  198 (334)
T ss_pred             hHH--------hHHHHHHHHHHHHhcC-CEEcCcccCCC---CCccHHHHHHHHHhCCCCEEEEec
Confidence            654        4456778888888775 34444444433   34578888888775 567776653

Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.

>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.24  E-value=1.6e-10  Score=91.46  Aligned_cols=130  Identities=8%  Similarity=0.020  Sum_probs=93.3

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC-CcEEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN-WTVAGFMFN   91 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~-W~~v~~i~~   91 (159)
                      .++.+++||.+|..+..++.++...++|+|++++.++.+.+  .+++++|+.|++..+..++++.++..+ |+++++|+.
T Consensus        65 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~a~~~~lt~--~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  142 (332)
T cd06344          65 PEILGVVGHYSSDATLAALDIYQKAKLVLISPTSTSVKLSN--PGPYFFRTVPSNAVAARALAKYLKKKNKIKKVAIFYN  142 (332)
T ss_pred             cCceEEEcCCCcHHHHHHHHHHhhcCceEEccCcCchhhcC--CCCcEEEeCCCcHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            48999999999999988999999999999998776666653  478999999999999999999999886 999999998


Q ss_pred             eCC-CcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          92 NYG-QTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        92 ~~~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      ++. +        +....+.+.+.+++..+..++....+..   ...++...+.++++ .+.+|++
T Consensus       143 ~~~~~--------g~~~~~~~~~~~~~~~g~~v~~~~~~~~---~~~~~~~~v~~i~~~~~d~v~~  197 (332)
T cd06344         143 STSPY--------SQSLKQEFTSALLERGGGIVVTPCDLSS---PDFNANTAVSQAINNGATVLVL  197 (332)
T ss_pred             CCchH--------hHHHHHHHHHHHHHhcCCeeeeeccCCC---CCCCHHHHHHHHHhcCCCEEEE
Confidence            764 3        3344556666666621223322222221   12345556666654 4555544

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily

Probab=99.23  E-value=1.6e-10  Score=88.42  Aligned_cols=134  Identities=13%  Similarity=0.133  Sum_probs=98.0

Q ss_pred             ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC-CcEEEE
Q psy8570          10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN-WTVAGF   88 (159)
Q Consensus        10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~-W~~v~~   88 (159)
                      ...+++.+++||.++..+..++..+..++||+|++.+....+.+ ..+++++++.|+......++++.++..+ |+++++
T Consensus        62 l~~~~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  140 (298)
T cd06268          62 LVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTG-KGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAI  140 (298)
T ss_pred             HHhCCceEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCccccc-CCCceEEEcccCcHHHHHHHHHHHHHhcCCCEEEE
Confidence            34568999999999988888999999999999998877655544 3578999999999999999999999988 999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++.++..        +....+.+.+.+++.+ +.++....+..   +..++.+.+++++. ..++|++.
T Consensus       141 v~~~~~~--------~~~~~~~~~~~~~~~g-~~i~~~~~~~~---~~~~~~~~~~~l~~~~~~~vi~~  197 (298)
T cd06268         141 IYDDYAY--------GRGLAAAFREALKKLG-GEVVAEETYPP---GATDFSPLIAKLKAAGPDAVFLA  197 (298)
T ss_pred             EEcCCch--------hHHHHHHHHHHHHHcC-CEEEEEeccCC---CCccHHHHHHHHHhcCCCEEEEc
Confidence            9987643        3445677777777764 23333222222   22456667766664 34555443

Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC

>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene

Probab=99.19  E-value=5.5e-10  Score=88.11  Aligned_cols=131  Identities=11%  Similarity=0.049  Sum_probs=100.1

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ++++.+|+||.++..+..++..+...++|+|+.++..+.+++...+|+++|+.|++......+++.+...+|+++++++.
T Consensus        63 ~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~  142 (336)
T cd06360          63 QDKVDVVVGPVHSGEALAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAW  142 (336)
T ss_pred             HhCCcEEEccCccHhHHHHHHHHHhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEec
Confidence            35899999999988887888889999999999888777777665678899999999999999999999889999999997


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC-ceEEE
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR-ARIIK  154 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~-aRIii  154 (159)
                      ++.+        +....+.+.+.+++.+ ..++....++.   ...++..++.++++. ..+|+
T Consensus       143 ~~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~v~~~~~~~pd~v~  194 (336)
T cd06360         143 DYAF--------GYEVVEGFKEAFTEAG-GKIVKELWVPF---GTSDFASYLAQIPDDVPDAVF  194 (336)
T ss_pred             cchh--------hHHHHHHHHHHHHHcC-CEEEEEEecCC---CCcchHHHHHHHHhcCCCEEE
Confidence            6543        4445677778887765 33333333332   346788888888753 34444

This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.

>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems

Probab=99.18  E-value=8.4e-10  Score=87.53  Aligned_cols=131  Identities=11%  Similarity=0.045  Sum_probs=98.4

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i~   90 (159)
                      .++|.+++||.+|..+..++.++...++|+|++++..+.+.+.  .++++|+.|+......++++.+ +.++|+++++++
T Consensus        65 ~~~V~~i~G~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~  142 (340)
T cd06349          65 DPRIVAVLGDFSSGVSMAASPIYQRAGLVQLSPTNSHPDFTKG--GDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILS  142 (340)
T ss_pred             cCCeEEEECCCccHhHHHhHHHHHhCCCeEEecCCCCCccccC--CCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEe
Confidence            4579999999999999999999999999999988766655543  4678999999888888888875 678999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      .++++        .....+.+.+.+++.+ ..++....+..   ...++...+.+++. .+++|++.
T Consensus       143 ~~~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~---~~~d~~~~v~~l~~~~~d~v~~~  197 (340)
T cd06349         143 VNTDW--------GRTSADIFVKAAEKLG-GQVVAHEEYVP---GEKDFRPTITRLRDANPDAIILI  197 (340)
T ss_pred             cCChH--------hHHHHHHHHHHHHHcC-CEEEEEEEeCC---CCCcHHHHHHHHHhcCCCEEEEc
Confidence            88764        3345667777777764 34443344433   24568888887764 56666543

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional

Probab=99.14  E-value=7.9e-10  Score=89.20  Aligned_cols=132  Identities=13%  Similarity=0.119  Sum_probs=101.0

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHH-HHHcCCcEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSI-LKNFNWTVAGFM   89 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~l-l~~f~W~~v~~i   89 (159)
                      ..+++.+++||.++..+..++.++...++|+|++++.++.+.+ ..+++++|+.+.+..++.++++. .+.++|+++++|
T Consensus        89 i~~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~s~~~~l~~-~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~k~va~i  167 (369)
T PRK15404         89 VNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTA-RGYQLIFRTIGLDSDQGPTAAKYILEKVKPKRIAVL  167 (369)
T ss_pred             HhCCceEEEcCCCchhHHHhHHHHHHCCCeEEecCCCCHHHhc-CCCceEEeCCCCcHHHHHHHHHHHHHhcCCCEEEEE
Confidence            3568999999999998989999999999999998887777765 35788999999998888888884 466899999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      +.++.+        +....+.+.+.+++.+ ..++....++.   ...|+...+.+++. .+++|++
T Consensus       168 ~~d~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---g~~D~~~~v~~l~~~~~d~v~~  222 (369)
T PRK15404        168 HDKQQY--------GEGLARSVKDGLKKAG-ANVVFFEGITA---GDKDFSALIAKLKKENVDFVYY  222 (369)
T ss_pred             eCCCch--------hHHHHHHHHHHHHHcC-CEEEEEEeeCC---CCCchHHHHHHHHhcCCCEEEE
Confidence            988754        3345677777777775 34444444543   34567777777764 5676654

>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway

Probab=99.12  E-value=1.7e-09  Score=85.73  Aligned_cols=129  Identities=12%  Similarity=0.014  Sum_probs=95.7

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.+++||.++..+..++.++...++|+|+.++....+.++..+++++|+.|++..+..+++.++...+|+++++++.+
T Consensus        64 ~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~vail~~~  143 (333)
T cd06359          64 DKVDFVTGVVFSNVLLAVVPPVLESGTFYISTNAGPSQLAGKQCSPYFFSTSWQNDQVHEAMGKYAQDKGYKRVFLIAPN  143 (333)
T ss_pred             cCCcEEEccCCcHHHHHHHHHHHHcCCeEEecCCCccccccccCCCcEEEeeCChHhhHHHHHHHHHHhCCCeEEEEecC
Confidence            48999999999999999999999999999998765555655555789999999999999999999998999999999987


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.+        +...++.+.+.+..    .++....++   ....|+...+.+++. ...+|++.
T Consensus       144 ~~~--------g~~~~~~~~~~~~~----~v~~~~~~~---~~~~d~~~~i~~l~~~~pd~v~~~  193 (333)
T cd06359         144 YQA--------GKDALAGFKRTFKG----EVVGEVYTK---LGQLDFSAELAQIRAAKPDAVFVF  193 (333)
T ss_pred             chh--------hHHHHHHHHHHhCc----eeeeeecCC---CCCcchHHHHHHHHhCCCCEEEEE
Confidence            754        33345666555532    122222222   133578777777775 56766553

This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.

>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes

Probab=99.09  E-value=3e-09  Score=83.66  Aligned_cols=129  Identities=13%  Similarity=0.082  Sum_probs=94.2

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.+||||.++..+..+...+...++|+|+.++....+.++..+|+++|+.|++..+...+++.+...+|+++++++.+
T Consensus        64 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v~il~~~  143 (333)
T cd06332          64 DKVDVVVGPVFSNVALAVVPSLTESGTFLISPNAGPSDLAGKLCSPNFFRTSWQNDQVHEAMGKYAADKGYKKVVIIAPD  143 (333)
T ss_pred             cCCcEEEcCCccHHHHHHHHHHhhcCCeEEecCCCCccccccCCCCcEEEeeCChHHhHHHHHHHHHHhCCceEEEEecC
Confidence            38999999999888878888888899999998877666666555789999999999999999999999999999999876


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.+        +....+.+.+.++  +  ..+....+..   ...++...++++++ ...+|++.
T Consensus       144 ~~~--------~~~~~~~~~~~~~--~--~~~~~~~~~~---~~~d~~~~i~~l~~~~~d~i~~~  193 (333)
T cd06332         144 YAA--------GKDAVAGFKRTFK--G--EVVEEVYTPL---GQLDFSAELAQIRAAKPDAVFVF  193 (333)
T ss_pred             cch--------hHHHHHHHHHhhc--E--EEeeEEecCC---CCcchHHHHHHHHhcCCCEEEEe
Confidence            542        3345566666665  2  1222222222   23457667777764 45666554

This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.

>KOG4440|consensus

Probab=99.07  E-value=2.8e-10  Score=95.13  Aligned_cols=136  Identities=18%  Similarity=0.191  Sum_probs=96.9

Q ss_pred             eccceeeEEEE--CCCCch---hHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCC
Q psy8570           9 TGFVVCVDAFL--GPVCDY---VIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNW   83 (159)
Q Consensus         9 ~~~~~~v~aii--Gp~~s~---~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W   83 (159)
                      +.+.+.+.|++  .|..|.   .-.++.--++.|.||++.-...+..++||..+++|+|+.|+..+++...+.+|.+|.|
T Consensus        90 ~li~~~vyav~vSh~~Ts~d~f~p~~vSYT~gFY~iPV~G~~~Rda~fSdKnIh~sFlRtvpPyshqa~VwleMl~~~~y  169 (993)
T KOG4440|consen   90 DLISSQVYAVLVSHPPTSNDHFTPTPVSYTAGFYRIPVLGLTTRDAIFSDKNIHLSFLRTVPPYSHQASVWLEMLRVYSY  169 (993)
T ss_pred             HHHhhheeEEEecCCCCCCcccccccceeeccceeeeeeeeeehhhhhccCceeeeEeecCCCccchhHHHHHHHHHhhc
Confidence            34455665555  233332   2234556778999999999888999999999999999999999999999999999999


Q ss_pred             cEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          84 TVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        84 ~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++|.++.++|..        +-.....++...++.. ......+.|+.   ..+++.+.|.++|+ .+||||.-
T Consensus       170 ~~vi~l~s~d~~--------gra~~~r~qt~~e~~~-~~~e~v~~f~p---~~~~~t~~l~~~k~~~~rv~~~~  231 (993)
T KOG4440|consen  170 NHVILLVSDDHE--------GRAAQKRLQTLLEERE-SKAEKVLQFDP---GTKNVTALLMEAKELEARVIILS  231 (993)
T ss_pred             ceEEEEEccccc--------chhHHhHHHHHHHHHh-hhhhhheecCc---ccchHHHHHhhhhhhhheeEEee
Confidence            999999887753        2222233333333322 12334567765   34678889999986 78998753

>KOG1054|consensus

Probab=99.05  E-value=1.2e-09  Score=91.08  Aligned_cols=132  Identities=8%  Similarity=0.169  Sum_probs=107.4

Q ss_pred             eeeccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEE
Q psy8570           7 YRTGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVA   86 (159)
Q Consensus         7 ~~~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v   86 (159)
                      |-+++++|+.|++|-........+..+|+.+++|.|+++.+..     ..-++.+++.|+   +..++++++.||+|..+
T Consensus        83 fCsq~s~Gv~Aifg~yd~ks~~~ltsfc~aLh~~~vtpsfp~~-----~~~~Fviq~RP~---l~~al~s~i~hy~W~~f  154 (897)
T KOG1054|consen   83 FCSQFSRGVYAIFGFYDKKSVNTLTSFCGALHVSFVTPSFPTD-----GDNQFVIQMRPA---LKGALLSLIDHYKWEKF  154 (897)
T ss_pred             HHHHHhhhHhhheecccccchhhhhhhccceeeeeecccCCcC-----CCceEEEEeCch---HHHHHHHHHHhcccceE
Confidence            3478899999999999999999999999999999999876422     122466999998   78899999999999999


Q ss_pred             EEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc--CceEEEeeeC
Q psy8570          87 GFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK--RARIIKSLDA  158 (159)
Q Consensus        87 ~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~--~aRIii~~~~  158 (159)
                      .++|+.+.         ++..++++.+.+..++  ..++...+... ++...|+.+++.+..  .-||+|.|.+
T Consensus       155 v~lyD~~r---------g~s~Lqai~~~a~~~n--w~VtA~~v~~~-~d~~~yr~~f~~l~~r~e~rv~iDce~  216 (897)
T KOG1054|consen  155 VYLYDTDR---------GLSILQAIMEAAAQNN--WQVTAINVGNI-NDVKEYRMLFEMLDRRQENRVLIDCES  216 (897)
T ss_pred             EEEEcccc---------hHHHHHHHHHHHHhcC--ceEEEEEcCCc-ccHHHHHHHHHHHhccccceEEEEccc
Confidence            99998763         7889999999998875  56777777653 355568888887753  4679998865

>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria

Probab=99.00  E-value=1.1e-08  Score=81.12  Aligned_cols=128  Identities=10%  Similarity=-0.049  Sum_probs=94.9

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      ++|.+++||.+|..+..+..++...++|+|+.++..+.+......++++|+.++...+...+...+..- ++++++|+.+
T Consensus        67 ~~V~avvG~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~  145 (333)
T cd06328          67 DGVDILVGSTSSGVALAVLPVAEENKKILIVEPAAADSITGKNWNRYTFRTGRNSSQDAIAAAAALGKP-GKKIATLAQD  145 (333)
T ss_pred             cCCeEEEccCCcHHHHHHHHHHHHhCCcEEecCCCCchhhccCCCCcEEEecCChHHHHHHHHHHHHhc-CCeEEEEecC
Confidence            489999999999999999999999999999987776666554445789999888777777766666554 8999999998


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEE
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARII  153 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIi  153 (159)
                      +.+        +....+.+.+.+++.+ ..++....+..   ...|+...+.+++. ...+|
T Consensus       146 ~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~l~~~~pd~V  195 (333)
T cd06328         146 YAF--------GRDGVAAFKAALEKLG-AAIVTEEYAPT---DTTDFTPYAQRLLDALKKVL  195 (333)
T ss_pred             ccc--------cHHHHHHHHHHHHhCC-CEEeeeeeCCC---CCcchHHHHHHHHhcCCCEE
Confidence            765        4445677777887765 35554444443   34568887777774 34444

Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.

>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins

Probab=98.98  E-value=1.8e-08  Score=79.42  Aligned_cols=131  Identities=11%  Similarity=0.067  Sum_probs=94.8

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.++||+.++..+..+..++...++|+|+.++.+..+.+ ...+.++|+.++.......+++.+...+|+++++++.+
T Consensus        67 ~~v~avig~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~~~  145 (336)
T cd06326          67 DKVFALFGYVGTPTTAAALPLLEEAGVPLVGPFTGASSLRD-PPDRNVFNVRASYADEIAAIVRHLVTLGLKRIAVFYQD  145 (336)
T ss_pred             cCcEEEEeCCCchhHHHHHHHHHHcCCeEEEecCCcHHhcC-CCCCceEEeCCChHHHHHHHHHHHHHhCCceEEEEEec
Confidence            48999999988877777778888999999998655444432 23567899999999999999999999999999999876


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.+        +....+.+.+.+++.+ ...+....++.   +..++...+.++++ ..++|++.
T Consensus       146 ~~~--------~~~~~~~~~~~~~~~G-~~~~~~~~~~~---~~~d~~~~~~~l~~~~~dav~~~  198 (336)
T cd06326         146 DAF--------GKDGLAGVEKALAARG-LKPVATASYER---NTADVAAAVAQLAAARPQAVIMV  198 (336)
T ss_pred             Ccc--------hHHHHHHHHHHHHHcC-CCeEEEEeecC---CcccHHHHHHHHHhcCCCEEEEE
Confidence            532        4556777888887765 33333334433   23466677777664 45666554

The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.

>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids

Probab=98.96  E-value=2.7e-08  Score=77.93  Aligned_cols=130  Identities=15%  Similarity=0.085  Sum_probs=92.3

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.++||+.++..+..+...+...++|+|+.+.......  ...++++|+.+++...+..+++.+...+|+++++++.+
T Consensus        65 ~~v~~vig~~~s~~~~~~~~~~~~~~vP~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vail~~~  142 (312)
T cd06333          65 DKVDAIIGPSTTPATMAVAPVAEEAKTPMISLAPAAAIVE--PKRKWVFKTPQNDRLMAEAILADMKKRGVKTVAFIGFS  142 (312)
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHhcCCCEEEccCCccccC--CCCCcEEEcCCCcHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            4899999999887777788888999999999876544333  23467889999999999999999999999999999876


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHh-cCceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAIT-KRARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~-~~aRIii~~  156 (159)
                      +.+        +....+.+.+.+++.+ +.++....++..   ..++...+.+++ ....+|++.
T Consensus       143 ~~~--------~~~~~~~~~~~~~~~G-~~v~~~~~~~~~---~~d~~~~~~~l~~~~pdaIi~~  195 (312)
T cd06333         143 DAY--------GESGLKELKALAPKYG-IEVVADERYGRT---DTSVTAQLLKIRAARPDAVLIW  195 (312)
T ss_pred             cHH--------HHHHHHHHHHHHHHcC-CEEEEEEeeCCC---CcCHHHHHHHHHhCCCCEEEEe
Confidence            532        3345667777777764 344333444331   234555555554 346666654

This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.

>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen

Probab=98.93  E-value=3.1e-08  Score=78.89  Aligned_cols=121  Identities=14%  Similarity=0.093  Sum_probs=92.2

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      .+++.+++||.++..+..++.++...++|+|+.+...... .   .+.++|+.+++..++.+++..+...+|+++++++.
T Consensus        57 ~~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~-~---~~~~f~~~~~~~~~~~~~~~~~~~~g~k~vaii~~  132 (336)
T cd06339          57 AEGADIIVGPLLKENVAALAAAAAELGVPVLALNNDESVA-A---GPNLFYFGLSPEDEARRAAEYARSQGKRRPLVLAP  132 (336)
T ss_pred             HcCCCEEEccCCHHHHHHHHhhhccCCCCEEEccCCcccc-C---CCCEEEecCChHHHHHHHHHHHHhcCccceEEEec
Confidence            4589999999999888888889999999999876443322 1   46789999999999999998888789999999997


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK  148 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~  148 (159)
                      ++.+        +....+.+.+.+++.+ ..++....++.   ...++...+.+++.
T Consensus       133 ~~~~--------g~~~~~~f~~~~~~~G-~~vv~~~~~~~---~~~d~~~~i~~i~~  177 (336)
T cd06339         133 DGAY--------GQRVADAFRQAWQQLG-GTVVAIESYDP---SPTDLSDAIRRLLG  177 (336)
T ss_pred             CChH--------HHHHHHHHHHHHHHcC-CceeeeEecCC---CHHHHHHHHHHHhc
Confidence            6543        4456677777787765 34554555543   45688888888875

This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily

Probab=98.90  E-value=4.8e-08  Score=72.87  Aligned_cols=134  Identities=16%  Similarity=0.242  Sum_probs=94.5

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ...++++++|+.++.....+...+..+++|+|+.++......   .++.+.++.++....+..+++++.+.+|+++++++
T Consensus        55 ~~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~  131 (269)
T cd01391          55 IQQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATAPDLT---GYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIY  131 (269)
T ss_pred             HHcCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCCCccC---CCceEEEEcCCcHHHHHHHHHHHHHhCCceEEEEe
Confidence            345799999999987776678888999999999887655443   46788999999999999999999999999999998


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcC--ceEEEeee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKR--ARIIKSLD  157 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~--aRIii~~~  157 (159)
                      .+..       .......+++.+.+++.+ ...........  .....+..+.+.+++.  .++|+++.
T Consensus       132 ~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~i~~~~  190 (269)
T cd01391         132 GDDG-------AYGRERLEGFKAALKKAG-IEVVAIEYGDL--DTEKGFQALLQLLKAAPKPDAIFACN  190 (269)
T ss_pred             cCCc-------chhhHHHHHHHHHHHhcC-cEEEeccccCC--CccccHHHHHHHHhcCCCCCEEEEcC
Confidence            7652       123455677777777653 12211111111  1124566666666653  67777664

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con

>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF)

Probab=98.88  E-value=3.9e-08  Score=77.82  Aligned_cols=127  Identities=9%  Similarity=-0.120  Sum_probs=91.1

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      ++|.+|+||.++..+..++.++...++|+|+......    ....++++|+.|+...+..++++.+..-+|+++++++.+
T Consensus        66 ~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~il~~d  141 (333)
T cd06331          66 DKVDAVFGCYTSASRKAVLPVVERGRGLLFYPTQYEG----GECSPNVFYTGATPNQQLLPLIPYLMEKYGKRFYLIGSD  141 (333)
T ss_pred             cCCcEEEecccHHHHHHHHHHHHhcCceEEeCCCCCC----CcCCCCeEEccCChHHhHHHHHHHHHHhcCCeEEEECCC
Confidence            4899999999999999999999999999998654222    123467899999998888888887655459999999887


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      +.+        +....+.+.+.+++.+ ..++....++.   +..++..++.+++. ...+|++
T Consensus       142 ~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~~~~~~~d~v~~  193 (333)
T cd06331         142 YVW--------PRESNRIARALLEELG-GEVVGEEYLPL---GTSDFGSVIEKIKAAGPDVVLS  193 (333)
T ss_pred             chh--------HHHHHHHHHHHHHHcC-CEEEEEEEecC---CcccHHHHHHHHHHcCCCEEEE
Confidence            654        3334566667777664 24444445543   34678888887764 4555443

This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t

>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides

Probab=98.87  E-value=6.1e-08  Score=76.77  Aligned_cols=126  Identities=14%  Similarity=-0.039  Sum_probs=89.8

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHH-HHHcCCcEEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSI-LKNFNWTVAGFMFN   91 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~l-l~~f~W~~v~~i~~   91 (159)
                      +++.+|+||.|+..+..++.++. .++|+|+..+....    ...++++|+.++...+..+.+.. .+..+|+++++++.
T Consensus        66 ~~v~aviG~~~s~~a~a~~~~~~-~~vp~i~~~~~~~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~i~~~  140 (333)
T cd06358          66 GGVDAIIGWHTSAVRNAVAPVVA-GRVPYVYTSLYEGG----ECNPGVFLTGETPEQQLAPAIPWLAEEKGARRWYLIGN  140 (333)
T ss_pred             CCCcEEEecCcHHHHHHHHHHHh-cCceEEeCCCcCCC----CCCCCEEEcCCCcHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            48999999999999998889998 99999987543221    23578899998888777655554 46689999999988


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      ++.+        +....+.+...+++.+ +.++....++.   +..++...+.++++ ...+|++
T Consensus       141 ~~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~v~~l~~~~pd~v~~  193 (333)
T cd06358         141 DYVW--------PRGSLAAAKRYIAELG-GEVVGEEYVPL---GTTDFTSVLERIAASGADAVLS  193 (333)
T ss_pred             cchh--------hHHHHHHHHHHHHHcC-CEEeeeeeecC---ChHHHHHHHHHHHHcCCCEEEE
Confidence            7653        2334566666777764 34444445543   45678888888875 4566654

This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int

>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=98.84  E-value=4e-08  Score=78.80  Aligned_cols=131  Identities=9%  Similarity=-0.017  Sum_probs=96.5

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC-----CcEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN-----WTVAG   87 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~-----W~~v~   87 (159)
                      +++.+++ +.++..+..++.++...++|+|+.++....+.+...+++++|+.|++..+..+++..+..-+     .++++
T Consensus        66 ~~V~~i~-~~~S~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~~Fr~~~~~~~~~~~l~~~~~~~~~~~~~~~kva  144 (351)
T cd06334          66 DGAVAFQ-GWSTGITEALIPKIAADKIPLMSGSYGATLADDGAVFPYNFPVGPTYSDQARALVQYIAEQEGGKLKGKKIA  144 (351)
T ss_pred             CCcEEEe-cCcHHHHHHhhHHHhhcCCcEEecccchhhccCCCCCCeeeeCCCCHHHHHHHHHHHHHHhcccCCCCCeEE
Confidence            3677765 56777787888899999999999876666665555688999999999999999999887655     58999


Q ss_pred             EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +|+.++.+        +....+.+.+.+++.+ ..++....++.   ...|+...+.+++. .+.+|++.
T Consensus       145 iv~~~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~D~~~~v~~i~~~~pd~V~~~  202 (351)
T cd06334         145 LVYHDSPF--------GKEPIEALKALAEKLG-FEVVLEPVPPP---GPNDQKAQWLQIRRSGPDYVILW  202 (351)
T ss_pred             EEeCCCcc--------chhhHHHHHHHHHHcC-CeeeeeccCCC---CcccHHHHHHHHHHcCCCEEEEe
Confidence            99998765        3345666777777765 34444444433   34578888888875 56776654

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system

Probab=98.83  E-value=2.5e-08  Score=80.12  Aligned_cols=111  Identities=11%  Similarity=0.041  Sum_probs=90.3

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..++|.+++||.+|..+..++.++...++|+|++++.++.+..+...++++|+.|++..++.++++.+..-+.+++++|+
T Consensus        56 i~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~kkvaii~  135 (347)
T TIGR03863        56 LAQGVRFFVLDLPAAALLALADAAKAKGALLFNAGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRWRRILLIQ  135 (347)
T ss_pred             HHCCCCEEEecCChHHHHHHHHHHHhCCcEEEeCCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCCCEEEEEe
Confidence            35679999999999999999999999999999998887777665556789999999999999999988766999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFD  130 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~  130 (159)
                      .++.+        +....+.+.+.+++.+ ..++....++
T Consensus       136 ~~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~  166 (347)
T TIGR03863       136 GPLPA--------DALYADAFRRSAKRFG-AKIVAERPFT  166 (347)
T ss_pred             CCCcc--------cHHHHHHHHHHHHHCC-CEEEEeEEec
Confidence            87765        3455677777777765 3455444454

Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.

>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]

Probab=98.82  E-value=8.7e-08  Score=77.31  Aligned_cols=132  Identities=12%  Similarity=0.077  Sum_probs=100.1

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHH-HcCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILK-NFNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~-~f~W~~v~~i~   90 (159)
                      .++|.+++||.||..+..+..++..-++|+|+++++++.+.....-+..+|+.|++..++.++++.+. .++.+++++|+
T Consensus        76 ~~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ii~  155 (366)
T COG0683          76 QDGVDAVVGPTTSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAIIG  155 (366)
T ss_pred             hcCceEEEEeccCcccccchhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcCCcEEEEEe
Confidence            47899999999999999999999999999999998877765544334489999999999999998886 56777999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      .++.+        +....+.+.+.++..+. ..+....+...   ..++..++.+++. ...+|++
T Consensus       156 ~~~~y--------g~~~~~~~~~~l~~~G~-~~~~~~~~~~~---~~~~~~~v~~i~~~~~d~v~~  209 (366)
T COG0683         156 DDYAY--------GEGLADAFKAALKALGG-EVVVEEVYAPG---DTDFSALVAKIKAAGPDAVLV  209 (366)
T ss_pred             CCCCc--------chhHHHHHHHHHHhCCC-eEEEEEeeCCC---CCChHHHHHHHHhcCCCEEEE
Confidence            98876        44567778888888762 32222344331   2238888888875 4555544

>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A

Probab=98.73  E-value=1e-07  Score=75.16  Aligned_cols=128  Identities=14%  Similarity=0.143  Sum_probs=93.3

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFMFN   91 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i~~   91 (159)
                      +++.+++||.++..+..++..+...++|+|+.++...    ....+.++|+.|+......++++.+ ++++.+++++|+.
T Consensus        68 ~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~  143 (343)
T PF13458_consen   68 DGVDAVVGPLSSAQAEAVAPIAEEAGIPYISPSASSP----SPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYP  143 (343)
T ss_dssp             STESEEEESSSHHHHHHHHHHHHHHT-EEEESSGGGG----TTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEE
T ss_pred             cCcEEEEecCCcHHHHHHHHHHHhcCcEEEEeeccCC----CCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEec
Confidence            7899999999999999999999999999999654332    2456789999999999999999965 5689999999998


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++.+        +....+.+.+.++..+ ..++....+..   +..++..+++++++ ...+|+++
T Consensus       144 ~~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~~  197 (343)
T PF13458_consen  144 DDPY--------GRSLAEAFRKALEAAG-GKVVGEIRYPP---GDTDFSALVQQLKSAGPDVVVLA  197 (343)
T ss_dssp             SSHH--------HHHHHHHHHHHHHHTT-CEEEEEEEE-T---TSSHHHHHHHHHHHTTTSEEEEE
T ss_pred             Cchh--------hhHHHHHHHHHHhhcC-ceeccceeccc---ccccchHHHHHHhhcCCCEEEEe
Confidence            7643        4556677778887775 34334445543   33677778887765 45555443

...

>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)

Probab=98.71  E-value=3.9e-07  Score=72.79  Aligned_cols=129  Identities=10%  Similarity=-0.114  Sum_probs=93.3

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHH-HcCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILK-NFNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~-~f~W~~v~~i~   90 (159)
                      +++|.+|+||.+|..+..+..++...++|++++...    .+....|+++|+.+.+..+...+++.+. ..+++++++++
T Consensus        65 ~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~i~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~k~vaii~  140 (348)
T cd06355          65 QDKVAAVFGCWTSASRKAVLPVFERHNGLLFYPVQY----EGLEQSPNVFYTGAAPNQQIIPAVDWLMSNKGGKRFYLVG  140 (348)
T ss_pred             hCCCcEEEeccchhhHHHHHHHHhccCCceecCCCc----cCCCCCCCEEEeCCChHHhHHHHHHHHHhccCCCeEEEEC
Confidence            458999999999999888999999999999975432    1223457789999888888877777665 46899999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      .++.+        +....+.+.+.+++.+ ..++....++.   ...|+...+.+++. .+.+|++.
T Consensus       141 ~d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~D~~~~v~~l~~~~pd~v~~~  195 (348)
T cd06355         141 SDYVY--------PRTANKILKAQLESLG-GEVVGEEYLPL---GHTDFQSIINKIKAAKPDVVVST  195 (348)
T ss_pred             CcchH--------HHHHHHHHHHHHHHcC-CeEEeeEEecC---ChhhHHHHHHHHHHhCCCEEEEe
Confidence            88764        3445667777777765 34444444433   35678888888774 56666543

This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.

>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=98.64  E-value=4e-07  Score=73.01  Aligned_cols=135  Identities=12%  Similarity=0.122  Sum_probs=90.0

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCC--C----CCcccCCeeEEeeCChhhHHHHHHHHHHHcC-CcE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVAN--F----ELKFEYPTLTRMMGSFSLVGQAVQSILKNFN-WTV   85 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~--l----~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~-W~~   85 (159)
                      +++.+++||.+|..+..++.++...++|+|+.+++...  +    .....+++.+|..++...+..+++..++..+ +++
T Consensus        68 d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~k~  147 (357)
T cd06337          68 DKVDLLLAGGTPDTTNPVSDQCEANGVPCISTMAPWQAWFFGRGGNPATGFKWTYHFFWGAEDVVATYVGMWKQLETNKK  147 (357)
T ss_pred             cCccEEEecCCcchhhHHHHHHHHhCCCeEEeccchhhhhccCCCCcccCCceeEEecCCHHHHHHHHHHHHHhCCCCce
Confidence            48999999999988888889999999999986543211  1    1112367888998888888888888888877 999


Q ss_pred             EEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          86 AGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        86 v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +++++.++.++     ........++.+.+++.+ ..++....++.   ...|+...+.+++. .+.+|++.
T Consensus       148 v~ii~~~~~~g-----~~~~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~D~~~~v~~ik~a~pD~v~~~  210 (357)
T cd06337         148 VGILYPNDPDG-----NAFADPVIGLPAALADAG-YKLVDPGRFEP---GTDDFSSQINAFKREGVDIVTGF  210 (357)
T ss_pred             EEEEeecCchh-----HHHHHhhhcccHHHHhCC-cEEecccccCC---CCCcHHHHHHHHHhcCCCEEEeC
Confidence            99999887652     111111222334455554 23444444443   34568888877774 56666543

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)

Probab=98.56  E-value=1.7e-06  Score=68.74  Aligned_cols=127  Identities=8%  Similarity=-0.039  Sum_probs=90.8

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~i~   90 (159)
                      .++|.+++||.++..+..+..++...++|+|.........    .-++++|+.+++..+..++++.+.. .+ +++++|+
T Consensus        65 ~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~----~~~~~F~~~~~~~~~~~~~~~~~~~~~~-~~vail~  139 (334)
T cd06356          65 QDKVDVVWGGISSASREAIRPIMDRTKQLYFYTTQYEGGV----CDRNTFCTGATPAQQFSTLVPYMMEKYG-KKVYTIA  139 (334)
T ss_pred             hCCCCEEEeCcchHHHHHHHHHHHhcCceEEeCCCccCCc----ccCCEEEeCCCcHHHHHHHHHHHHHccC-CeEEEEC
Confidence            4689999999999999999999999999999753322111    2357899999999889988887765 34 6799999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      .++.+        +....+.+.+.+++.+ ..++....++.   ...++...+.+++. .+.+|++
T Consensus       140 ~d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~v~~l~~~~pd~v~~  193 (334)
T cd06356         140 ADYNF--------GQISAEWVRKIVEENG-GEVVGEEFIPL---DVSDFGSTIQKIQAAKPDFVMS  193 (334)
T ss_pred             CCchh--------hHHHHHHHHHHHHHcC-CEEEeeeecCC---CchhHHHHHHHHHhcCCCEEEE
Confidence            87654        3344566667777765 34444444433   45688888888875 5666554

This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.

>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein

Probab=98.46  E-value=5.1e-06  Score=66.69  Aligned_cols=128  Identities=7%  Similarity=-0.157  Sum_probs=90.6

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~i~   90 (159)
                      ..++.+++||.+|..+..+..++...++|++.+....    .....++++|+.+++..+..++++.+.. .+.+++++++
T Consensus        66 ~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~i~~~~~~----~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~g~k~v~~l~  141 (359)
T TIGR03407        66 QDKVAAVFGCWTSASRKAVLPVFEENNGLLFYPVQYE----GEECSPNIFYTGAAPNQQIIPAVDYLLSKKGAKRFFLLG  141 (359)
T ss_pred             hCCCcEEEcCCcHHHHHHHHHHHhccCCceEeCCccc----CcccCCCEEEcCCChHHHHHHHHHHHHhccCCceEEEec
Confidence            4679999999999998888888888999998654221    1223567899999999888888876654 6999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      .++.+        +....+.+.+.+++.+ ..++....++.   ...|+...+.+++. ....|++
T Consensus       142 ~d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~D~s~~v~~l~~~~pDav~~  195 (359)
T TIGR03407       142 SDYVF--------PRTANKIIKAYLKSLG-GTVVGEDYTPL---GHTDFQTIINKIKAFKPDVVFN  195 (359)
T ss_pred             CccHH--------HHHHHHHHHHHHHHcC-CEEEeeEEecC---ChHhHHHHHHHHHHhCCCEEEE
Confidence            87653        3334555667777765 34444444432   45678888888875 4555544

Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.

>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type

Probab=98.38  E-value=8.3e-06  Score=66.13  Aligned_cols=127  Identities=9%  Similarity=-0.079  Sum_probs=89.9

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHH-HcCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILK-NFNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~-~f~W~~v~~i~   90 (159)
                      ++++.+++||.+|..+..++.++...++|+|......    .....++++|+.|+...+..++++.+. ..++ ++++++
T Consensus        66 ~d~v~~viG~~~S~~~~A~~~~~~~~~~~~i~~~~~~----~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g~-~va~l~  140 (374)
T TIGR03669        66 RDKVDALWAGYSSATREAIRPIIDRNEQLYFYTNQYE----GGVCDEYTFAVGATARQQLGTVVPYMVEEYGK-KIYTIA  140 (374)
T ss_pred             hCCCCEEEcCCchHHHHHHHHHHHhcCceEEcCcccc----cccCCCCEEEcCCChHHHHHHHHHHHHHcCCC-eEEEEc
Confidence            3689999999999999999999999999999643211    111246789999999988888888775 4674 789998


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      .++.+        +....+.+.+.+++.+ ..++....++.   ...++...+.+++. .+.+|++
T Consensus       141 ~d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---g~~Df~~~l~~i~~~~pD~V~~  194 (374)
T TIGR03669       141 ADYNF--------GQLSADWVRVIAKENG-AEVVGEEFIPL---SVSQFSSTIQNIQKADPDFVMS  194 (374)
T ss_pred             CCcHH--------HHHHHHHHHHHHHHcC-CeEEeEEecCC---CcchHHHHHHHHHHcCCCEEEE
Confidence            87654        3344556666666664 34444344432   45688889988885 5666654

Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.

>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=98.27  E-value=1.8e-05  Score=62.68  Aligned_cols=131  Identities=15%  Similarity=0.027  Sum_probs=89.5

Q ss_pred             cce-eeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570          11 FVV-CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM   89 (159)
Q Consensus        11 ~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i   89 (159)
                      ... ++.+++||.++.....+ ..+...++|+|+.++.......   .+..+++.+++.....++++.+..-+-++++++
T Consensus        63 i~~~~V~~iig~~~s~~~~~~-~~~~~~~ip~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~i  138 (341)
T cd06341          63 VEDDKVVAVVGGSSGAGGSAL-PYLAGAGIPVIGGAGTSAWELT---SPNSFPFSGGTPASLTTWGDFAKDQGGTRAVAL  138 (341)
T ss_pred             HHhcCceEEEecccccchhHH-HHHhhcCCceecCCCCCchhhc---CCCeEEecCCCcchhHHHHHHHHHcCCcEEEEE
Confidence            344 89999999988766555 7778899999988765544332   355678888888888888888888788999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.++..       .+....+.+.+.+++.+ ...+....+..   +..++...+++++. ...+|++.
T Consensus       139 ~~~~~~-------~g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~~~~i~~~~pdaV~~~  195 (341)
T cd06341         139 VTALSA-------AVSAAAALLARSLAAAG-VSVAGIVVITA---TAPDPTPQAQQAAAAGADAIITV  195 (341)
T ss_pred             EeCCcH-------HHHHHHHHHHHHHHHcC-CccccccccCC---CCCCHHHHHHHHHhcCCCEEEEe
Confidence            876531       24456777778887765 23333333332   23467777777764 45666554

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family

Probab=97.86  E-value=0.0007  Score=54.36  Aligned_cols=129  Identities=10%  Similarity=-0.000  Sum_probs=83.6

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~i~   90 (159)
                      .++|.+++||..+..+..++.++...++|++..+.... +.   .-+.++++.++......++++.+.. ++ +++++|+
T Consensus        65 ~~~V~aiiG~~~s~~~~a~~~~~~~~~~~~~~~~~~~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~  139 (360)
T cd06357          65 EDGVRVIFGCYTSSSRKAVLPVVERHDALLWYPTLYEG-FE---YSPNVIYTGAAPNQNSVPLADYLLRHYG-KRVFLVG  139 (360)
T ss_pred             hCCCcEEEeCccHHHHHHHHHHHHhcCceEEeCCCccC-Cc---ccCCEEEeCCCcHHHHHHHHHHHHhcCC-cEEEEEC
Confidence            46899999999998888889999999999997654221 11   1134566777666666677776553 44 7899999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      .++.+        +....+.+.+.+++.+ ..++....+... ....++...+.+++. .+.+|++
T Consensus       140 ~d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~~-~~~~d~s~~v~~l~~~~pd~V~~  195 (360)
T cd06357         140 SNYIY--------PYESNRIMRDLLEQRG-GEVLGERYLPLG-ASDEDFARIVEEIREAQPDFIFS  195 (360)
T ss_pred             CCCcc--------hHHHHHHHHHHHHHcC-CEEEEEEEecCC-CchhhHHHHHHHHHHcCCCEEEE
Confidence            87754        3445566666776654 233332223221 125678888888775 4555543

This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.

>KOG1053|consensus

Probab=97.52  E-value=0.0026  Score=56.26  Aligned_cols=81  Identities=17%  Similarity=0.190  Sum_probs=59.7

Q ss_pred             eeeEEE-ECCCCch--hHHHHHHHHhccCCcEEccccC-CCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570          13 VCVDAF-LGPVCDY--VIAPVARYSGVWGIPVLTAGGL-VANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus        13 ~~v~ai-iGp~~s~--~~~~va~~~~~~~iP~is~~~~-~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      .+|.++ +++....  .+...--++....||+|+.-+. ...+.+++.-.+|+++.|+-++++++++++|+.|+|..+++
T Consensus        99 ~~V~glvf~d~s~~~avaq~LDfiSs~t~iPIisi~gg~a~~~~~kd~gs~flQlg~Sieqqa~Vml~iL~~ydW~~Fs~  178 (1258)
T KOG1053|consen   99 ARVHGLVFEDDSDTEAVAQILDFISSQTHIPIISIHGGAAMVLTPKDLGSTFLQLGPSIEQQAQVMLKILEEYDWYNFSL  178 (1258)
T ss_pred             cceeEEEeecCccchHHHHHHHHHHHhcCCcEEEEecCccceecCCCCcceEEEeCCcHHHHHHHHHHHHHHcCcceeEE
Confidence            445544 4666552  2233444567789999986554 34455665556899999999999999999999999999999


Q ss_pred             EEEeC
Q psy8570          89 MFNNY   93 (159)
Q Consensus        89 i~~~~   93 (159)
                      |....
T Consensus       179 vtt~~  183 (1258)
T KOG1053|consen  179 VTTQF  183 (1258)
T ss_pred             EEeec
Confidence            97765

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems

Probab=95.74  E-value=0.3  Score=36.23  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=63.9

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ...+++++++..++.........+..-++|+|..+.....      ...+.++.+.+...+...++.+..-+-++++++.
T Consensus        52 ~~~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~~~~~~------~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~  125 (264)
T cd01537          52 IARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDIPD------GDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLA  125 (264)
T ss_pred             HHcCCCEEEEecCCCcchhHHHHhhhcCCCEEEeccCCCC------CcccceEecCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence            3457888888777655544456667789999987765432      1344567777777888888888877888999997


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSP  118 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~  118 (159)
                      .....      .......+++.+.+++.
T Consensus       126 ~~~~~------~~~~~~~~~~~~~~~~~  147 (264)
T cd01537         126 GPLGS------STARERVAGFKDALKEA  147 (264)
T ss_pred             CCCCC------CcHHHHHHHHHHHHHHc
Confidence            65431      12333456666666544

Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily

Probab=94.82  E-value=1  Score=33.37  Aligned_cols=93  Identities=10%  Similarity=-0.039  Sum_probs=60.0

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ..++++++....+..... ...+..-++|+|..+.....       +.+..+.+.+...++..++.+..-|.+++++++.
T Consensus        53 ~~~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~~~-------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~  124 (264)
T cd06267          53 SRRVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPLDG-------LGVDSVGIDNRAGAYLAVEHLIELGHRRIAFIGG  124 (264)
T ss_pred             HcCcCEEEEecCCcchHH-HHHHHHcCCCEEEecccccC-------CCCCEEeeccHHHHHHHHHHHHHCCCceEEEecC
Confidence            357887776655544444 55567789999988764321       2334556666667777777777668899999976


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSP  118 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~  118 (159)
                      +...      .....+.+++.+.+++.
T Consensus       125 ~~~~------~~~~~r~~g~~~~~~~~  145 (264)
T cd06267         125 PPDL------STARERLEGYREALEEA  145 (264)
T ss_pred             CCcc------chHHHHHHHHHHHHHHc
Confidence            5431      12444566777777654

Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily

Probab=92.11  E-value=2.9  Score=31.56  Aligned_cols=96  Identities=17%  Similarity=0.072  Sum_probs=60.2

Q ss_pred             cceeeEEEECCCCchh-HHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570          11 FVVCVDAFLGPVCDYV-IAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG   87 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~-~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~   87 (159)
                      ...++++||...++.. ....-..+...++|+|.......   .    +...++.+.+...+...++.+..-  +=.+++
T Consensus        57 ~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~~~~~---~----~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~  129 (272)
T cd06300          57 IAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFDGTVT---T----PCAYNVNEDQAEFGKQGAEWLVKELGGKGNVL  129 (272)
T ss_pred             HHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEecCCC---C----CceeEecCCHHHHHHHHHHHHHHHcCCCceEE
Confidence            3458888887554432 23333456668999998765321   1    234567788888888887766654  778899


Q ss_pred             EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570          88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPS  119 (159)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  119 (159)
                      ++.....      ...+..+.+++.+.+.+.+
T Consensus       130 ~i~~~~~------~~~~~~R~~g~~~a~~~~~  155 (272)
T cd06300         130 VVRGLAG------HPVDEDRYAGAKEVLKEYP  155 (272)
T ss_pred             EEECCCC------CcchHHHHHHHHHHHHHCC
Confidence            9874322      1124456677777776653

Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.

>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily

Probab=91.47  E-value=4.5  Score=30.00  Aligned_cols=96  Identities=16%  Similarity=0.136  Sum_probs=59.0

Q ss_pred             cceeeEEEECCCCc-hhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570          11 FVVCVDAFLGPVCD-YVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG   87 (159)
Q Consensus        11 ~~~~v~aiiGp~~s-~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~   87 (159)
                      ...+++++|+-.++ .........+...++|+|..+.....      ...+.++.+.+...+..+++.+...  +-++++
T Consensus        52 ~~~~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~~~~~~~------~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~  125 (267)
T cd01536          52 IAQGVDGIIISPVDSAALTPALKKANAAGIPVVTVDSDIDG------GNRLAYVGTDNYEAGRLAGEYLAKLLGGKGKVA  125 (267)
T ss_pred             HHcCCCEEEEeCCCchhHHHHHHHHHHCCCcEEEecCCCCc------cceeEEEecCHHHHHHHHHHHHHHHhCCCceEE
Confidence            34478887754333 22222334455678999987654321      1234456677777778778777666  779999


Q ss_pred             EEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570          88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSP  118 (159)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  118 (159)
                      +++.....      .......+++.+.+++.
T Consensus       126 ~i~~~~~~------~~~~~r~~gf~~~~~~~  150 (267)
T cd01536         126 IIEGPPGS------SNAQERVKGFRDALKEY  150 (267)
T ss_pred             EEEccccc------chHHHHHHHHHHHHHhC
Confidence            99865431      12344567777777665

Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2

>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis

Probab=90.74  E-value=5.8  Score=29.92  Aligned_cols=94  Identities=11%  Similarity=0.044  Sum_probs=57.1

Q ss_pred             ceeeEE-EECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEEE
Q psy8570          12 VVCVDA-FLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAGF   88 (159)
Q Consensus        12 ~~~v~a-iiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~~   88 (159)
                      ..++++ |++|..+.........+...++|+|..+....   + ..   ...+.+.+...+...+..+..-  +.+++++
T Consensus        55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~-~~---~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~  127 (275)
T cd06320          55 NKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVNDKLI---P-NA---TAFVGTDNKANGVRGAEWIIDKLAEGGKVAI  127 (275)
T ss_pred             HhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEECCCCC---C-cc---ceEEecCcHHHHHHHHHHHHHHhCCCceEEE
Confidence            356776 45665443333444555678999998765321   1 11   1234666666677777666544  8999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSP  118 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  118 (159)
                      +....+.      ..+..+.+++.+.+++.
T Consensus       128 l~~~~~~------~~~~~r~~g~~~~~~~~  151 (275)
T cd06320         128 IEGKAGA------FAAEQRTEGFTEAIKKA  151 (275)
T ss_pred             EeCCCCC------ccHHHHHHHHHHHHhhC
Confidence            8753321      23455677777888776

Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=90.01  E-value=4  Score=30.42  Aligned_cols=95  Identities=12%  Similarity=0.064  Sum_probs=55.6

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ..+++++|...++.........+...++|+|.......     ..+++   ....+...+...+..+...+.++++++..
T Consensus        53 ~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~-----~~~~~---v~~d~~~~g~~~~~~l~~~g~~~i~~i~~  124 (266)
T cd06282          53 RQRVDGLILTVADAATSPALDLLDAERVPYVLAYNDPQ-----PGRPS---VSVDNRAAARDVAQALAALGHRRIAMLAG  124 (266)
T ss_pred             hcCCCEEEEecCCCCchHHHHHHhhCCCCEEEEeccCC-----CCCCE---EeeCcHHHHHHHHHHHHHcCcccEEEecc
Confidence            45688777533332222344556677999987754321     12332   33555667777777777779999999964


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPS  119 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~  119 (159)
                      ....     ......+.+++.+.+++.+
T Consensus       125 ~~~~-----~~~~~~r~~gf~~~l~~~~  147 (266)
T cd06282         125 RLAA-----SDRARQRYAGYRAAMRAAG  147 (266)
T ss_pred             cccc-----CchHHHHHHHHHHHHHHcC
Confidence            3210     0013345677777776653

This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding

>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A

Probab=88.42  E-value=9  Score=31.30  Aligned_cols=126  Identities=10%  Similarity=0.027  Sum_probs=67.2

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCC-hhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGS-FSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~-~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      +++|.+|||--.|.+=..|--+....|-..+-+.. --.+   ..-+..+-+... +..+...+--++.+||=+++.+|-
T Consensus        66 ~d~V~~ifGc~TSasRKaVlPvvE~~~~LL~Yp~~-YEG~---E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lvG  141 (363)
T PF13433_consen   66 EDGVRAIFGCYTSASRKAVLPVVERHNALLFYPTQ-YEGF---ECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLVG  141 (363)
T ss_dssp             HS---EEEE--SHHHHHHHHHHHHHCT-EEEE-S------------TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEEE
T ss_pred             hCCccEEEecchhhhHHHHHHHHHhcCceEEeccc-cccc---cCCCceEEcCCCchhhHHHHHHHHHhccCCceEEEec
Confidence            57899999998888888888888888888773321 1111   122455666644 444555666788899999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHH-HHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEE
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYK-IITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIK  154 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~-~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii  154 (159)
                      ++..         |-.....+.+ .+...++ .++...-++-   ...++.+++.+|+. ...+|+
T Consensus       142 SdYv---------~pre~Nri~r~~l~~~Gg-evvgE~Y~pl---g~td~~~ii~~I~~~~Pd~V~  194 (363)
T PF13433_consen  142 SDYV---------YPRESNRIIRDLLEARGG-EVVGERYLPL---GATDFDPIIAEIKAAKPDFVF  194 (363)
T ss_dssp             ESSH---------HHHHHHHHHHHHHHHTT--EEEEEEEE-S----HHHHHHHHHHHHHHT-SEEE
T ss_pred             CCcc---------chHHHHHHHHHHHHHcCC-EEEEEEEecC---CchhHHHHHHHHHhhCCCEEE
Confidence            8764         3344444444 3344442 3332222222   45789999999885 445554

>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown

Probab=88.25  E-value=2.1  Score=36.77  Aligned_cols=118  Identities=12%  Similarity=0.084  Sum_probs=63.8

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhc--cCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGV--WGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~--~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      ...|+..||||-.-.....++.....  -.+|++.....+.. .   .-+.++....+.++-+..++..+..=|+++..+
T Consensus       275 ~~~ga~~ViGPL~k~~V~~l~~~~~~~~~~vp~LaLN~~~~~-~---~~~~l~~f~LspEdEA~q~A~~a~~~g~~~alv  350 (536)
T PF04348_consen  275 VADGADFVIGPLLKSNVEALAQLPQLQAQPVPVLALNQPDNS-Q---APPNLYQFGLSPEDEARQAAQKAFQDGYRRALV  350 (536)
T ss_dssp             HHTT--EEE---SHHHHHHHHH-GG-GGTT-EEEES---TT--------TTEEE----HHHHHHHHHHHHHHTT--S-EE
T ss_pred             HHcCCCEEEcCCCHHHHHHHHhcCcccccCCceeeccCCCcc-c---CccceEEEeCCcHHHHHHHHHHHHhcCCCCEEE
Confidence            45788999999987766655554432  38899976655433 1   123456666677778889999999999999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHH
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIA  145 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~  145 (159)
                      ++.+++.        +..+.+++.+.+...++ ..+....|.    +..++...++.
T Consensus       351 l~p~~~~--------g~R~~~aF~~~W~~~gg-~~~~~~~~~----~~~~~~~~i~~  394 (536)
T PF04348_consen  351 LAPQNAW--------GQRMAEAFNQQWQALGG-QVAEVSYYG----SPADLQAAIQP  394 (536)
T ss_dssp             EEESSHH--------HHHHHHHHHHHHHHHHS-S--EEEEES----STTHHHHHHHH
T ss_pred             EcCCChH--------HHHHHHHHHHHHHHcCC-CceeeEecC----CHHHHHHHHhh
Confidence            9887754        44566777777777653 233333332    34567776664

; PDB: 3CKM_A.

>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators

Probab=87.66  E-value=9.8  Score=28.41  Aligned_cols=95  Identities=7%  Similarity=-0.032  Sum_probs=57.3

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ..+++|+|.-.+..........+...++|+|..+...+.    ..++   .....+...+...++.+...|.++++++..
T Consensus        54 ~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~~~~----~~~~---~V~~d~~~~g~~a~~~l~~~g~~~i~~i~~  126 (270)
T cd01545          54 RSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPGTPD----PDSP---CVRIDDRAAAREMTRHLIDLGHRRIAFIAG  126 (270)
T ss_pred             HCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecCCCC----CCCC---eEEeccHHHHHHHHHHHHHCCCceEEEEeC
Confidence            457888887554432233334556689999987654221    1122   234556666677777777679999999975


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPS  119 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~  119 (159)
                      ....      .....+.+++.+.+++.+
T Consensus       127 ~~~~------~~~~~R~~Gf~~~~~~~~  148 (270)
T cd01545         127 PPDH------RASAERLEGYRDALAEAG  148 (270)
T ss_pred             CCCc------hhHHHHHHHHHHHHHHcC
Confidence            4321      223445677777776653

Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind

>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit

Probab=86.63  E-value=7.9  Score=27.90  Aligned_cols=35  Identities=11%  Similarity=0.153  Sum_probs=29.0

Q ss_pred             eeeEEEECCCCc--hhHHHHHHHHhccCCcEEccccC
Q psy8570          13 VCVDAFLGPVCD--YVIAPVARYSGVWGIPVLTAGGL   47 (159)
Q Consensus        13 ~~v~aiiGp~~s--~~~~~va~~~~~~~iP~is~~~~   47 (159)
                      ++++.++|+...  .....+..++..+++|+++....
T Consensus        28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~   64 (162)
T TIGR00315        28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT   64 (162)
T ss_pred             CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence            578899999875  67778999999999999976643

Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.

>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions

Probab=86.28  E-value=12  Score=28.11  Aligned_cols=128  Identities=10%  Similarity=0.036  Sum_probs=64.8

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCC---CcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFE---LKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVA   86 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~---~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v   86 (159)
                      ..+++++|+..++. ....  .....++|+|..+...+...   +....+....+...+.......+..+...  +.+++
T Consensus        58 ~~~vd~iI~~~~~~-~~~~--~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~i  134 (281)
T cd06325          58 ADKPDLIVAIATPA-AQAA--ANATKDIPIVFTAVTDPVGAGLVKSLEKPGGNVTGVSDLVPVETQLELLKKLLPDAKTV  134 (281)
T ss_pred             hcCCCEEEEcCcHH-HHHH--HHcCCCCCEEEEecCCccccccccccccCCCceeCeecccchHHHHHHHHHHCCCCcEE
Confidence            45788888865432 2222  24556899998764322110   11111111112223344455666666654  99999


Q ss_pred             EEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEe
Q psy8570          87 GFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKS  155 (159)
Q Consensus        87 ~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~  155 (159)
                      ++++....       ..+....+++.+.+++.+ +..+. . . .  ...+++.+.++++.....+|++
T Consensus       135 ~~l~~~~~-------~~~~~r~~g~~~~~~~~g-~~~~~-~-~-~--~~~~~~~~~~~~~~~~~dai~~  190 (281)
T cd06325         135 GVLYNPSE-------ANSVVQVKELKKAAAKLG-IEVVE-A-T-V--SSSNDVQQAAQSLAGKVDAIYV  190 (281)
T ss_pred             EEEeCCCC-------ccHHHHHHHHHHHHHhCC-CEEEE-E-e-c--CCHHHHHHHHHHhcccCCEEEE
Confidence            99975432       123455677777777654 22111 1 1 1  1234455666665443345544

This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=86.25  E-value=12  Score=27.92  Aligned_cols=98  Identities=17%  Similarity=0.110  Sum_probs=60.6

Q ss_pred             cceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCC--cEEE
Q psy8570          11 FVVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNW--TVAG   87 (159)
Q Consensus        11 ~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W--~~v~   87 (159)
                      ...++++|| .|..+......-.-+..-+||+|+....     .....+....+.+.+...+..+++.+....=  .++.
T Consensus        52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~-----~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~  126 (257)
T PF13407_consen   52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD-----EAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVL  126 (257)
T ss_dssp             HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST-----HHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEE
T ss_pred             HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc-----ccccccceeeeeccHHHHHHHHHHHHHHHhccCceEE
Confidence            345676655 7766656666666688889999987654     0112233456677788888888887764322  3666


Q ss_pred             EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570          88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPS  119 (159)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  119 (159)
                      ++....+      ......+.+++.+.+++.+
T Consensus       127 ~~~~~~~------~~~~~~r~~g~~~~l~~~~  152 (257)
T PF13407_consen  127 ILSGSPG------NPNTQERLEGFRDALKEYP  152 (257)
T ss_dssp             EEESSTT------SHHHHHHHHHHHHHHHHCT
T ss_pred             eccCCCC------chHHHHHHHHHHHHHhhcc
Confidence            6644332      2234457788888887743

...

>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs

Probab=85.13  E-value=8.7  Score=28.62  Aligned_cols=95  Identities=15%  Similarity=0.126  Sum_probs=55.4

Q ss_pred             cceeeEE-EECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CCcEEE
Q psy8570          11 FVVCVDA-FLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NWTVAG   87 (159)
Q Consensus        11 ~~~~v~a-iiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W~~v~   87 (159)
                      ...+++| +++|..+......-..+...++|+|..+.....      ...+-.+...+...+...++.+..-  +-++++
T Consensus        52 ~~~~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~~~~~~~------~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~  125 (268)
T cd06323          52 ITRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDREANG------GEVVSQIASDNVAGGKMAAEYLVKLLGGKGKVV  125 (268)
T ss_pred             HHcCCCEEEEcCCChHHHHHHHHHHHHCCCcEEEEccCCCC------CceEEEEccCcHHHHHHHHHHHHHHhCCCceEE
Confidence            3456776 666655433222223345679999988654221      1123345556555667666666655  678999


Q ss_pred             EEEEeCCCcCCCCCCchHhHHHHHHHHHcC
Q psy8570          88 FMFNNYGQTTGKGNSNCWFTIASVYKIITS  117 (159)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~  117 (159)
                      ++....+.      .....+.+++.+.++.
T Consensus       126 ~l~~~~~~------~~~~~r~~g~~~~l~~  149 (268)
T cd06323         126 ELQGIPGA------SAARERGKGFHEVVDK  149 (268)
T ss_pred             EEeCCCCC------ccHHHHHHHHHHHHHh
Confidence            98764321      2244566777777776

Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.

>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]

Probab=84.39  E-value=20  Score=28.83  Aligned_cols=134  Identities=15%  Similarity=0.028  Sum_probs=73.1

Q ss_pred             eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCC---CCCcccCCeeEEeeCChhhHHHHHHHHHHHc--CC
Q psy8570           9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVAN---FELKFEYPTLTRMMGSFSLVGQAVQSILKNF--NW   83 (159)
Q Consensus         9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~---l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f--~W   83 (159)
                      +...++.+++++-+.+.+-   +-+...-++|+|-.+.+++.   +-+.-+-|---=|.-++..-...-+.|++.-  |=
T Consensus        83 ql~~~~~dviv~i~tp~Aq---~~~s~~~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pna  159 (322)
T COG2984          83 QLVGDKPDVIVAIATPAAQ---ALVSATKTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNA  159 (322)
T ss_pred             HhhcCCCcEEEecCCHHHH---HHHHhcCCCCEEEEccCchhhccCCccccCCCCceeecCCcchHHHHHHHHHHhCCCC
Confidence            4455566666665544333   23344455999977765432   2221111222223445544455566776653  77


Q ss_pred             cEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCce-EEEeeeC
Q psy8570          84 TVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRAR-IIKSLDA  158 (159)
Q Consensus        84 ~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aR-Iii~~~~  158 (159)
                      ++++++|..++.       .-...++.|.+.+++.+  ..+......    +..+....++.+..+.. |++-+|+
T Consensus       160 k~Igv~Y~p~E~-------ns~~l~eelk~~A~~~G--l~vve~~v~----~~ndi~~a~~~l~g~~d~i~~p~dn  222 (322)
T COG2984         160 KSIGVLYNPGEA-------NSVSLVEELKKEARKAG--LEVVEAAVT----SVNDIPRAVQALLGKVDVIYIPTDN  222 (322)
T ss_pred             eeEEEEeCCCCc-------ccHHHHHHHHHHHHHCC--CEEEEEecC----cccccHHHHHHhcCCCcEEEEecch
Confidence            899999998753       34567788888888875  332323332    22345556665554443 4455553

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=82.29  E-value=18  Score=26.98  Aligned_cols=94  Identities=15%  Similarity=0.022  Sum_probs=54.7

Q ss_pred             cceeeEEEECC-CCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH--cCCcEEE
Q psy8570          11 FVVCVDAFLGP-VCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN--FNWTVAG   87 (159)
Q Consensus        11 ~~~~v~aiiGp-~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~--f~W~~v~   87 (159)
                      ...++++++.. ..+.....+-..+...++|+|........       +.+..+...+...++..+..+..  -+.++++
T Consensus        52 ~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~~~~-------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~  124 (273)
T cd06305          52 IAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVDSDN-------PKVNNTTQDDYSLARLSLDQLVKDLGGKGNVG  124 (273)
T ss_pred             HHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCCCCC-------CccceeeechHHHHHHHHHHHHHHhCCCCCEE
Confidence            45578888764 33333333334456789999987653211       22334666667777766666655  4889999


Q ss_pred             EEEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570          88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSP  118 (159)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  118 (159)
                      ++... +.      .....+.+++.+.+++.
T Consensus       125 ~i~~~-~~------~~~~~R~~g~~~~~~~~  148 (273)
T cd06305         125 YVNVA-GF------PPLDRRYDVWQAVLKAY  148 (273)
T ss_pred             EEEcc-CC------chHHHHHHHHHHHHHHC
Confidence            98643 21      12334555666655554

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional

Probab=82.15  E-value=15  Score=26.71  Aligned_cols=47  Identities=15%  Similarity=0.046  Sum_probs=35.0

Q ss_pred             ceeeEEEECCCCch---hHHHHHHHHhccCCcEEccccCCCCCCCcccCC
Q psy8570          12 VVCVDAFLGPVCDY---VIAPVARYSGVWGIPVLTAGGLVANFELKFEYP   58 (159)
Q Consensus        12 ~~~v~aiiGp~~s~---~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~   58 (159)
                      .++++.++|.....   ....+..++..+++|+++.......|..+...+
T Consensus        34 AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~   83 (171)
T PRK00945         34 AKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDA   83 (171)
T ss_pred             CCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccC
Confidence            36788999998854   566688999999999998776555555554433

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=81.24  E-value=2.1  Score=30.64  Aligned_cols=31  Identities=26%  Similarity=0.200  Sum_probs=27.5

Q ss_pred             eEEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570          15 VDAFLGPVCDYVIAPVARYSGVWGIPVLTAG   45 (159)
Q Consensus        15 v~aiiGp~~s~~~~~va~~~~~~~iP~is~~   45 (159)
                      ++.++||++|.=+.....++..+++++++.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~   31 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAG   31 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECC
Confidence            4688999999988888899999999999875

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PTZ00088 adenylate kinase 1; Provisional

Probab=80.93  E-value=2.1  Score=32.52  Aligned_cols=31  Identities=10%  Similarity=-0.103  Sum_probs=27.8

Q ss_pred             EEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570          16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGG   46 (159)
Q Consensus        16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~   46 (159)
                      ++++||+.+.-......++..+++|+|+.+.
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~gd   39 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKENLKHINMGN   39 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence            7889999999888888899999999998774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1jdn_A	441	Crystal Structure Of Hormone Receptor Length = 441		3e-16
1yk1_A	479	Structure Of Natriuretic Peptide Receptor-C Complex		4e-15
1yk0_B	480	Structure Of Natriuretic Peptide Receptor-c Complex		4e-15
1dp4_A	435	Dimerized Hormone Binding Domain Of The Atrial Natr		4e-09

>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor Length = 441

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 63/100 (63%), Gaps = 6/100 (6%)
Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
           D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ +
Sbjct: 86  DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMM 145
Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKI 114
            ++ ++ +W+ A  ++++      K   NC+FT+  V+++
Sbjct: 146 LALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEV 180

>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With Brain Natriuretic Peptide Length = 479

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 16  DAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAV 74
           D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ +
Sbjct: 128 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMM 187
Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE 131
            ++ ++ +W+ A  ++++      K   NC+FT+  V+++           + SFDE
Sbjct: 188 LALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEVFQEEGLHT--SIYSFDE 237

>pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic Peptide Receptor Length = 435

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 18  FLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSI 77
           FLGP C Y  APV R++  W +P+LTAG       +K EY   TR   S   +G  V ++
Sbjct: 81  FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTAL 140
Query: 78  LKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETV--T 135
            +   W     +   Y    G  +  C+F +  +Y  +        + +    +E V   
Sbjct: 141 HRRLGWEHQALVL--YADRLGD-DRPCFFIVEGLYMRV-----RERLNITVNHQEFVEGD 192
Query: 136 PEKLKEQLIAITKRARII 153
           P+   + L A+ ++ R+I
Sbjct: 193 PDHYPKLLRAVRRKGRVI 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	9e-23
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	4e-21
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	4e-10
3qek_A	384	NMDA glutamate receptor subunit; amino terminal do	2e-07
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	9e-06
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	1e-05
3ks9_A	496	Mglur1, metabotropic glutamate receptor 1; glutama	5e-05
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	5e-05
3mq4_A	481	Mglur7, metabotropic glutamate receptor 7; glutama	8e-05
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	2e-04
3sm9_A	479	Mglur3, metabotropic glutamate receptor 3; structu	7e-04

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435

 Score = 92.2 bits (228), Expect = 9e-23
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 6/140 (4%)

Query: 14  CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQA 73
               FLGP C Y  APV R++  W +P+LTAG       +K EY   TR   S   +G  
Sbjct: 77  SPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDF 136

Query: 74  VQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET 133
           V ++ +   W     +           +  C+F +  +Y  +       ++ +   +   
Sbjct: 137 VTALHRRLGWEHQALVLYADRLGD---DRPCFFIVEGLYMRVRE---RLNITVNHQEFVE 190

Query: 134 VTPEKLKEQLIAITKRARII 153
             P+   + L A+ ++ R+I
Sbjct: 191 GDPDHYPKLLRAVRRKGRVI 210

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441

 Score = 87.5 bits (216), Expect = 4e-21
 Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 10/140 (7%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQA 73
            D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K  EY  LTR+  +++ +G+ 
Sbjct: 85  PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEM 144

Query: 74  VQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET 133
           + ++ ++ +W+ A  ++++      K   NC+FT+  V+++         +    +  + 
Sbjct: 145 MLALFRHHHWSRAALVYSD-----DKLERNCYFTLEGVHEVF----QEEGLHTSIYSFDE 195

Query: 134 VTPEKLKEQLIAITKRARII 153
                L++ +  I    R++
Sbjct: 196 TKDLDLEDIVRNIQASERVV 215

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433

 Score = 56.1 bits (135), Expect = 4e-10
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
                G VC  V + +A     W +  L+          K +YP   R + S + V  A+
Sbjct: 86  HLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAI 145

Query: 75  QSILKNFNWTVAGFMF--NNYGQTT 97
             +LK++ W   G +          
Sbjct: 146 LKLLKHYQWKRVGTLTQDVQRFSEV 170

>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 10/151 (6%)

Query: 13  VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQ 72
           + V     P       P++  +G + IPV+     ++ +  K  + +  R +  +S    
Sbjct: 69  ILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQAL 128

Query: 73  AVQSILKNFNWTVAGFMF--NNYG-------QTTGKGNSNCWFTIASVYKIITSPSGSND 123
               +++ FNW     +   ++ G       +T  +G  +             S      
Sbjct: 129 VWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRG 188

Query: 124 MKLESFDEETVTPEKLKEQLIAITK-RARII 153
            K +   +     + L   L+   +  AR+I
Sbjct: 189 PKADKVLQFEPGTKNLTALLLEAKELEARVI 219

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395

 Score = 43.6 bits (102), Expect = 9e-06
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           V A  GP        V       G+P +       +     +      +   FS + +A+
Sbjct: 72  VAAIFGPSHSSSANAVQSICNALGVPHIQTR--WKHQVSDNKDSFYVSLYPDFSSLSRAI 129

Query: 75  QSILKNFNWTVAGFMFNN 92
             +++ F W     ++++
Sbjct: 130 LDLVQFFKWKTVTVVYDD 147

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           V A  G      +  +  + G   +  +T       F     +P + +M         A+
Sbjct: 61  VYAIFGFYDKKSVNTITSFCGTLHVSFITPS-----FPTDGTHPFVIQMRPDLK---GAL 112

Query: 75  QSILKNFNWTVAGFMFNNY 93
            S+++ + W    +++++ 
Sbjct: 113 LSLIEYYQWDKFAYLYDSD 131

>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Length = 496

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 17  AFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQS 76
             +GP    V   V     ++ IP +       +   K  Y    R++ S +L  +A+  
Sbjct: 131 GVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLD 190

Query: 77  ILKNFNWTVAGFMF--NNYGQ 95
           I+K +NWT    +    NYG+
Sbjct: 191 IVKRYNWTYVSAVHTEGNYGE 211

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 15  VDAFLGP-VCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQA 73
           V + LGP       + V+   G   IP +  G       L++       +  S   V  A
Sbjct: 71  VVSVLGPSSSPASASTVSHICGEKEIPHIKVG-PEETPRLQYLRFASVSLYPSNEDVSLA 129

Query: 74  VQSILKNFNWTVAGFMFNNYGQTTG 98
           V  ILK+FN+  A  +         
Sbjct: 130 VSRILKSFNYPSASLICAKAECLLR 154

>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} PDB: 2e4z_A* Length = 481

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           V   +G     V   VA    ++ IP ++             Y   +R++   S   QA+
Sbjct: 118 VVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAM 177

Query: 75  QSILKNFNWTVAGFMF--NNYGQ 95
             I+K   W     +    +YG+
Sbjct: 178 VDIVKALGWNYVSTLASEGSYGE 200

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 8/79 (10%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           V A  G      +  +  + G      +T       F    +   + +M  +      A+
Sbjct: 70  VYAIFGFYDQMSMNTLTSFCGALHTSFVTPS-----FPTDADVQFVIQMRPALK---GAI 121

Query: 75  QSILKNFNWTVAGFMFNNY 93
            S+L  + W    ++++  
Sbjct: 122 LSLLSYYKWEKFVYLYDTE 140

>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Length = 479

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           +   +G     V   VA    ++ IP ++     A    K  Y    R +       +A+
Sbjct: 117 IAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAM 176

Query: 75  QSILKNFNWTVAGFMF--NNYGQ 95
             IL+ FNWT    +    +YG+
Sbjct: 177 AEILRFFNWTYVSTVASEGDYGE 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
3sm9_A	479	Mglur3, metabotropic glutamate receptor 3; structu	99.88
3ks9_A	496	Mglur1, metabotropic glutamate receptor 1; glutama	99.88
2e4u_A	555	Metabotropic glutamate receptor 3; G-protein-coupl	99.88
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	99.87
3mq4_A	481	Mglur7, metabotropic glutamate receptor 7; glutama	99.84
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	99.83
3qel_B	364	Glutamate [NMDA] receptor subunit epsilon-2; ION c	99.83
3qek_A	384	NMDA glutamate receptor subunit; amino terminal do	99.82
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	99.79
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	99.74
4gpa_A	389	Glutamate receptor 4; PBP fold, ligand-gated ION c	99.73
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	99.69
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	99.66
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	99.64
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	99.62
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	99.57
3n0w_A	379	ABC branched chain amino acid family transporter,	99.5
3i45_A	387	Twin-arginine translocation pathway signal protei;	99.49
3i09_A	375	Periplasmic branched-chain amino acid-binding Pro;	99.49
3h5l_A	419	Putative branched-chain amino acid ABC transporter	99.49
3n0x_A	374	Possible substrate binding protein of ABC transpo	99.46
4eyg_A	368	Twin-arginine translocation pathway signal; PSI-bi	99.44
4evq_A	375	Putative ABC transporter subunit, substrate-bindi	99.41
4f06_A	371	Extracellular ligand-binding receptor; PSI-biology	99.41
3ipc_A	356	ABC transporter, substrate binding protein (amino;	99.39
3lop_A	364	Substrate binding periplasmic protein; protein str	99.39
3td9_A	366	Branched chain amino acid ABC transporter, peripl	99.37
1usg_A	346	Leucine-specific binding protein; leucine-binding	99.33
3hut_A	358	Putative branched-chain amino acid ABC transporter	99.33
3sg0_A	386	Extracellular ligand-binding receptor; structural	99.33
3snr_A	362	Extracellular ligand-binding receptor; structural	99.25
3eaf_A	391	ABC transporter, substrate binding protein; PSI2,	99.19
3lkb_A	392	Probable branched-chain amino acid ABC transporter	99.14
4gnr_A	353	ABC transporter substrate-binding protein-branche	99.02
1pea_A	385	Amidase operon; gene regulator, receptor, binding	98.96
2h4a_A	325	YRAM (HI1655); perplasmic binding protein, lipopro	98.59
3ckm_A	327	YRAM (HI1655), LPOA; periplasmic-binding protein,	98.38
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	90.46
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	88.83
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	87.91
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	87.68
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	86.4
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	83.39
2h0a_A	276	TTHA0807, transcriptional regulator; repressor, st	82.36
2qu7_A	288	Putative transcriptional regulator; structural gen	82.17
3clk_A	290	Transcription regulator; 11017J, PSI-II, NYSGXRC,	80.52

>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}

Probab=99.88  E-value=4.1e-22  Score=164.01  Aligned_cols=135  Identities=16%  Similarity=0.160  Sum_probs=115.5

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      .+++|||||.+|..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.+++++++||||+||++|+++
T Consensus       115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~d  194 (479)
T 3sm9_A          115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASE  194 (479)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEec
Confidence            57999999999999999999999999999999999999999989999999999999999999999999999999999998


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHH-HHHhc-CceEEEeee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQL-IAITK-RARIIKSLD  157 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L-~~~~~-~aRIii~~~  157 (159)
                      +++        +...++.+.+++++.+ ++++....+... ....++..++ +.+++ .++|||+..
T Consensus       195 d~~--------G~~~~~~~~~~~~~~G-i~v~~~~~i~~~-~~~~d~~~~l~~~i~~s~a~vIi~~~  251 (479)
T 3sm9_A          195 GDY--------GETGIEAFEQEARLRN-ISIATAEKVGRS-NIRKSYDSVIRELLQKPNARVVVLFM  251 (479)
T ss_dssp             SHH--------HHHHHHHHHHHHHTTT-CEEEEEEEECC---CHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             chh--------hHHHHHHHHHHHHHCC-ceEEEEEEcCCC-CChHHHHHHHHHHHhcCCCeEEEEEc
Confidence            764        5667889999999875 677666666542 2356788888 66664 689887653

>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*

Probab=99.88  E-value=4.2e-22  Score=164.60  Aligned_cols=136  Identities=15%  Similarity=0.206  Sum_probs=117.1

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      .+++++|||||.+|..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.+++++++||||+||++|+
T Consensus       125 ~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~  204 (496)
T 3ks9_A          125 TKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVH  204 (496)
T ss_dssp             --CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEE
Confidence            46789999999999999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc---CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK---RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~---~aRIii~~  156 (159)
                      +++++        +...++.+.+++++.+ ++++....+... ....++..+++++++   +++|||+.
T Consensus       205 ~dd~~--------G~~~~~~~~~~~~~~G-i~v~~~~~i~~~-~~~~d~~~~l~~i~~~~~~a~vii~~  263 (496)
T 3ks9_A          205 TEGNY--------GESGMDAFKELAAQEG-LSIAHSDKIYSN-AGEKSFDRLLRKLRERLPKARVVVCF  263 (496)
T ss_dssp             ESSHH--------HHHHHHHHHHHHHHTT-CEEEEEEEECTT-CCHHHHHHHHHHHHTTTTTTCEEEEE
T ss_pred             eccHH--------HHHHHHHHHHHHHHcC-ceEEEEEEECCC-CCHHHHHHHHHHHHhccCceEEEEEe
Confidence            98764        5667888888888875 677666666432 346788888888875   68988764

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*

Probab=99.88  E-value=7.3e-22  Score=164.88  Aligned_cols=136  Identities=15%  Similarity=0.139  Sum_probs=117.9

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      +++++|||||.+|..+..++.++..+++|+|+++++++.++++..||+|+|+.|++..++.+++++++||||+||++|++
T Consensus       115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~  194 (555)
T 2e4u_A          115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVAS  194 (555)
T ss_dssp             CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEe
Confidence            57899999999999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHh--cCceEEEeee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAIT--KRARIIKSLD  157 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~--~~aRIii~~~  157 (159)
                      ++++        +...++.+.+++++.+ ++++....+... .+..++.+++++++  ..+||||+..
T Consensus       195 d~~~--------g~~~~~~~~~~~~~~g-i~v~~~~~~~~~-~~~~~~~~~l~~i~~~s~a~vIi~~~  252 (555)
T 2e4u_A          195 EGDY--------GETGIEAFEQEARLRN-ICIATAEKVGRS-NIRKSYDSVIRELLQKPNARVVVLFM  252 (555)
T ss_dssp             SSTT--------HHHHHHHHHHHHHTTT-CEEEEEEEECTT-CCHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             eChH--------HHHHHHHHHHHHHHCC-ccEEEEEEeCCC-CChHHHHHHHHHHhccCCCCEEEEEc
Confidence            8865        5667888889898875 677666666542 24567888999985  3689987753

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*

Probab=99.87  E-value=6.2e-22  Score=160.29  Aligned_cols=135  Identities=30%  Similarity=0.617  Sum_probs=113.6

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcc-cCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKF-EYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~-~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      +++.|||||.||..+..++.++..+++|+|+++++++.++++. .||+++|+.|++..++.++++++++|+|+||++|++
T Consensus        83 ~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~  162 (441)
T 1jdp_A           83 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS  162 (441)
T ss_dssp             CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence            4899999999999999999999999999999999999999887 899999999999999999999999999999999999


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSL  156 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~  156 (159)
                      +++++     +.|+..++.+.+.+++.+ ++++.. .+..  .+..++..++++++..+||||++
T Consensus       163 d~~~g-----~~~~~~~~~~~~~~~~~g-~~v~~~-~~~~--~~~~d~~~~l~~i~~~~~vii~~  218 (441)
T 1jdp_A          163 DDKLE-----RNCYFTLEGVHEVFQEEG-LHTSIY-SFDE--TKDLDLEDIVRNIQASERVVIMC  218 (441)
T ss_dssp             CCSSS-----CHHHHHHHHHHHHHHHHT-CEEEEE-EECT--TSCCCHHHHHHHHHHHCSEEEEE
T ss_pred             cCCcc-----cchHHHHHHHHHHHHhcC-cEEEEE-EecC--CcccCHHHHHHHhhcCCcEEEEe
Confidence            88652     347778889999888765 455433 3322  12235788888888668988876

>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*

Probab=99.84  E-value=1.1e-21  Score=161.35  Aligned_cols=135  Identities=15%  Similarity=0.165  Sum_probs=103.0

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      ++++|||||.+|..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.+++++++||||+||++|+++
T Consensus       116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d  195 (481)
T 3mq4_A          116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASE  195 (481)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChH--HHHHHHHHHh--cCceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPE--KLKEQLIAIT--KRARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~--~~~~~L~~~~--~~aRIii~~  156 (159)
                      +++        +...++.+.+.+.+.++++++....+.... ...  ++..++++++  ..++|||+.
T Consensus       196 ~~~--------G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~-~~~~~d~~~~l~~i~~~s~a~vIi~~  254 (481)
T 3mq4_A          196 GSY--------GEKGVESFTQISKEAGGLSIAQSVRIPQER-KDRTIDFDRIIKQLLDTPNSRAVVIF  254 (481)
T ss_dssp             CHH--------HHHHHHHHHHCC---CCCEECCCCCCCCC-------CCSHHHHCCCCC----CEEEC
T ss_pred             chh--------HHHHHHHHHHHHHHhCCEEEEEEEEcCCCC-ccchHHHHHHHHHHHhcCCCEEEEEE
Confidence            764        555677777777653345665545554321 122  5667888776  368887764

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*

Probab=99.83  E-value=1.4e-20  Score=151.74  Aligned_cols=139  Identities=26%  Similarity=0.468  Sum_probs=111.0

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      .+++.|||||.||..+..++.++..+++|+|+++++++.++++..||+++|+.|++..++.++++++++|+|+||++||.
T Consensus        75 ~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~  154 (435)
T 1dp4_A           75 EHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLY  154 (435)
T ss_dssp             HHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             hcCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEE
Confidence            46899999999999999999999999999999999999999987899999999999999999999999999999999944


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcC-CCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITS-PSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD  157 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~  157 (159)
                      .|+..   ++.++...++.+.+.+.+ .+ ++++... +..  .+..++.++|+++++.+||||++-
T Consensus       155 ~d~~~---~~~~~g~~~~~~~~~~~~~~g-~~v~~~~-~~~--~~~~d~~~~l~~i~~~~~viv~~~  214 (435)
T 1dp4_A          155 ADRLG---DDRPCFFIVEGLYMRVRERLN-ITVNHQE-FVE--GDPDHYPKLLRAVRRKGRVIYICS  214 (435)
T ss_dssp             ECCSS---SCCHHHHHHHHHHHHHHHHHC-CEEEEEE-ECT--TCGGGHHHHHHHHHHHCSEEEEES
T ss_pred             ccCCC---CcchHHHHHHHHHHHHHhhcC-eEEEEEE-Eec--CchhhHHHHHHHHHhhCceEEEec
Confidence            33210   122344567778888876 54 4554333 322  245678889998888889887753

>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*

Probab=99.83  E-value=2.4e-20  Score=148.66  Aligned_cols=131  Identities=12%  Similarity=0.076  Sum_probs=94.4

Q ss_pred             eeeEEEE-CCCCchhHHH--HHHHHhccCCcEEccccCCC-CCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570          13 VCVDAFL-GPVCDYVIAP--VARYSGVWGIPVLTAGGLVA-NFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus        13 ~~v~aii-Gp~~s~~~~~--va~~~~~~~iP~is~~~~~~-~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      .+|.|+| ||.++..+..  ++.+++.+++|+|+++++++ .++++.+||+|+||.|++..++.++++|++||||+||++
T Consensus        62 ~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~i  141 (364)
T 3qel_B           62 RKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSI  141 (364)
T ss_dssp             SCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEE
Confidence            4687877 5555544544  99999999999999999988 899999999999999999999999999999999999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCC--C-CCCcceeeeeeccCCChHHHHHHH-HHHhc-CceEEEee
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSP--S-GSNDMKLESFDEETVTPEKLKEQL-IAITK-RARIIKSL  156 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~-~~~~~~~~~f~~~~~~~~~~~~~L-~~~~~-~aRIii~~  156 (159)
                      ||+++ .        +   ++.+.+.+++.  + ++|......+..+ ....+++.+| +++++ .+||||+.
T Consensus       142 I~~d~-~--------g---~~~~~~~l~~~~~~~~ici~~~~~i~~~-~~~~~~~~~l~~~i~~~~a~ViIv~  201 (364)
T 3qel_B          142 VTTYF-P--------G---YQDFVNKIRSTIENSFVGWELEEVLLLD-MSLDDGDSKIQNQLKKLQSPIILLY  201 (364)
T ss_dssp             EEESC-T--------T---HHHHHHHHHHHHHTCSSCCEEEEEEEEC-TTSCSSSCHHHHHHTTCCCSEEEEE
T ss_pred             EEeCC-c--------c---HHHHHHHHHHHhhccccceEEEEEEccC-CCcccHHHHHHHHHHccCCcEEEEE
Confidence            99864 2        2   23344333332  1 2344333333221 1223466677 57764 68887764

>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*

Probab=99.82  E-value=7.7e-20  Score=145.59  Aligned_cols=138  Identities=15%  Similarity=0.149  Sum_probs=103.5

Q ss_pred             ccceeeEEEEC-----CCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCc
Q psy8570          10 GFVVCVDAFLG-----PVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWT   84 (159)
Q Consensus        10 ~~~~~v~aiiG-----p~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~   84 (159)
                      ...++|.||+|     |.|+..+..++.++..+++|+|++++.++.++++..||+++|+.|++..++.++++++++|+|+
T Consensus        61 Li~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~  140 (384)
T 3qek_A           61 LISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWN  140 (384)
T ss_dssp             TGGGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCC
T ss_pred             HHHcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCe
Confidence            45568999999     6788889999999999999999999999999998899999999999999999999999999999


Q ss_pred             EEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCC-----------ccee-------eeeeccCCChHHHHHHHHHH
Q psy8570          85 VAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSN-----------DMKL-------ESFDEETVTPEKLKEQLIAI  146 (159)
Q Consensus        85 ~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~-----------~~~~-------~~f~~~~~~~~~~~~~L~~~  146 (159)
                      ||++|++++++        +....+.+.+.+++.+ ..           +...       ..+.....+..++..+|+++
T Consensus       141 ~v~ii~~d~~~--------G~~~~~~~~~~~~~~g-~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i  211 (384)
T 3qek_A          141 HVILIVSDDHE--------GRAAQKKLETLLEGKE-SKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEA  211 (384)
T ss_dssp             EEEEEEESSHH--------HHHHHHHHHHHHC---------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHH
T ss_pred             EEEEEEEcCcc--------cHHHHHHHHHHHHhcc-CccccccccccceeeeccccCcccceecccCCchhhHHHHHHHH
Confidence            99999998764        5556778888887764 21           1110       22211111335788899988


Q ss_pred             hc-CceEEEee
Q psy8570         147 TK-RARIIKSL  156 (159)
Q Consensus       147 ~~-~aRIii~~  156 (159)
                      ++ .+||||+.
T Consensus       212 ~~~~~~vii~~  222 (384)
T 3qek_A          212 KELEARVIILS  222 (384)
T ss_dssp             HTSSCCEEEEE
T ss_pred             HhcCCcEEEEE
Confidence            75 68887764

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*

Probab=99.79  E-value=5e-19  Score=142.76  Aligned_cols=129  Identities=19%  Similarity=0.228  Sum_probs=110.1

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      .++.+||||.||..+..++.++..+++|+|++++.++.++++..||+++|+.|++..++.++++++++|+|++|++|+++
T Consensus        84 ~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~  163 (433)
T 4f11_A           84 PNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQD  163 (433)
T ss_dssp             CCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             CceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence            38999999999999999999999999999999999999999888999999999999999999999999999999999998


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +++        +....+.+.+.+++.+ ++++....+..      ++...|+++++ .+|+|+++
T Consensus       164 ~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~------d~~~~l~~i~~~~~~vii~~  213 (433)
T 4f11_A          164 VQR--------FSEVRNDLTGVLYGED-IEISDTESFSN------DPCTSVKKLKGNDVRIILGQ  213 (433)
T ss_dssp             SHH--------HHHHHHHHHHHSSSSS-CEEEEEEEESS------CCHHHHHHHHHTTCCEEEEE
T ss_pred             chh--------hHHHHHHHHHHHHHcC-ceEEEEeccCc------CHHHHHHHHhhCCCeEEEEe
Confidence            754        5667788888888875 46655555532      45667777764 68888765

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*

Probab=99.74  E-value=8.1e-18  Score=134.21  Aligned_cols=130  Identities=12%  Similarity=0.155  Sum_probs=105.6

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..++|.+||||.||..+..++.++..+++|+|++++.++.++++.  ++++|+.|++..++.++++++++|+|+|+++|+
T Consensus        68 ~~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~--~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~  145 (395)
T 3h6g_A           68 LSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKD--SFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY  145 (395)
T ss_dssp             HHHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTCCC--CSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             hhcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccccC--ceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence            356899999999999999999999999999999999888888764  458999999999999999999999999999997


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                       ++++        +...++.+.+.+++.+ ++++.. .+..   ...++..+|+++++ .+++|++.
T Consensus       146 -d~~~--------g~~~~~~~~~~~~~~g-~~v~~~-~~~~---~~~d~~~~l~~i~~~~~~vi~~~  198 (395)
T 3h6g_A          146 -DDST--------GLIRLQELIKAPSRYN-LRLKIR-QLPA---DTKDAKPLLKEMKRGKEFHVIFD  198 (395)
T ss_dssp             -SSTH--------HHHHTHHHHTGGGTSS-CEEEEE-ECCS---SGGGGHHHHHHHHHTTCCEEEEE
T ss_pred             -EChh--------HHHHHHHHHHhhhcCC-ceEEEE-EeCC---CchhHHHHHHHHhhcCCeEEEEE
Confidence             4433        5566778888887765 344332 3433   35678899999985 67877654

>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}

Probab=99.73  E-value=9.2e-18  Score=132.67  Aligned_cols=126  Identities=10%  Similarity=0.131  Sum_probs=96.0

Q ss_pred             ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570          10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM   89 (159)
Q Consensus        10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i   89 (159)
                      ...++|.|||||.||..+..++.++..++||++++++.   .+++..|++++|+.     +++++++++++|+|+||++|
T Consensus        65 l~~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~---~~~~~~~~~~~~~~-----~~~a~~~l~~~~~w~~vaii  136 (389)
T 4gpa_A           65 QYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFP---TEGESQFVLQLRPS-----LRGALLSLLDHYEWNCFVFL  136 (389)
T ss_dssp             HHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCC---CSSCCSSEEECSCC-----CHHHHHHHHHHTTCCEEEEE
T ss_pred             HHhcCCEEEEeCCccHHHHHHHHHHHHhCCCceecccc---ccccccCCccccCC-----HHHHHHHHHHHcCCcEEEEE
Confidence            34678999999999999999999999999999988754   34566777666543     35699999999999999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      |+++.         +...++.+.+.+.+.+ ++++....+.   ....++.++|+++++ .+|+||+.
T Consensus       137 ~~~d~---------~~~~~~~~~~~~~~~g-~~v~~~~~~~---~~~~d~~~~l~~i~~~~~~vIv~~  191 (389)
T 4gpa_A          137 YDTDR---------GYSILQAIMEKAGQNG-WHVSAICVEN---FNDVSYRQLLEELDRRQEKKFVID  191 (389)
T ss_dssp             ECSTT---------CSHHHHHHHHHHHTTT-CEEEEEECTT---CCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             Eecch---------hhHHHHHHHHHHHhcC-ceEEEEeecC---CcchhHHHHHHHhhccCCcEEEEE
Confidence            97664         3346778888888875 3443332222   356789999999875 67777654

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A

Probab=99.69  E-value=6.4e-17  Score=129.03  Aligned_cols=128  Identities=19%  Similarity=0.214  Sum_probs=94.4

Q ss_pred             cceeeEEEECCCCchh-HHHHHHHHhccCCcEEccccCCCCCCCcccCCee--EEeeCChhhHHHHHHHHHHHcCCcEEE
Q psy8570          11 FVVCVDAFLGPVCDYV-IAPVARYSGVWGIPVLTAGGLVANFELKFEYPTL--TRMMGSFSLVGQAVQSILKNFNWTVAG   87 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~-~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~--~r~~p~~~~~~~a~~~ll~~f~W~~v~   87 (159)
                      ..++|.|||||.||.. +..++.++..+++|+|++++..   +++..||++  +|+.|++..++.++++++++|+|+||+
T Consensus        67 ~~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~va  143 (393)
T 3om0_A           67 LPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSAS  143 (393)
T ss_dssp             GGGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEE
T ss_pred             HhcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEE
Confidence            3568999999999954 5799999999999999998764   455678888  999999999999999999999999999


Q ss_pred             EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +|++++++         ...++++.+.+.+.+ .++ ....+.    +..++..+|+++++ .+++|++.
T Consensus       144 ii~~~~~~---------g~~l~~~~~~~~~~g-~~v-~~~~~~----~~~d~~~~l~~i~~~~~~vii~~  198 (393)
T 3om0_A          144 LICAKAEC---------LLRLEELVRGFLISK-ETL-SVRMLD----DSRDPTPLLKEIRDDKVSTIIID  198 (393)
T ss_dssp             EEESSTTH---------HHHTHHHHHHHHHSS-SCE-EEEECC-----CCCSHHHHHHHHHHTCSEEEEE
T ss_pred             EEEeCchH---------HHHHHHHHHhhhccC-CeE-EEEecC----CCCCHHHHHHHHHhcCCeEEEEE
Confidence            99987653         334455555555443 243 233332    23467788888875 67877654

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A

Probab=99.66  E-value=2.4e-16  Score=126.11  Aligned_cols=126  Identities=9%  Similarity=0.135  Sum_probs=95.3

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..++|.|||||.||..+..++.++..+++|+|+++.+  .+ ++..|+  +|+.|+   ++.++++++++|||+||++||
T Consensus        66 i~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~~--~~-~~~~~~--~~~~p~---~~~a~~~~~~~~gw~~vaii~  137 (389)
T 3o21_A           66 FSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFP--TD-ADVQFV--IQMRPA---LKGAILSLLSYYKWEKFVYLY  137 (389)
T ss_dssp             HTTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSCC--CS-SCCSSE--EECSCC---SHHHHHHHHHHHTCCEEEEEE
T ss_pred             HhcCcEEEEeCCChhHHHHHHHHhccCCCceeecCCC--Cc-cCCceE--EEEccC---HHHHHHHHHHhCCCCEEEEEE
Confidence            3458999999999999999999999999999987542  22 344555  666676   899999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                       ++++        +...++.+.+.+.+.+ ++++....+..  .+..++..+|++++. .+|+||+.
T Consensus       138 -d~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~  192 (389)
T 3o21_A          138 -DTER--------GFSVLQAIMEAAVQNN-WQVTARSVGNI--KDVQEFRRIIEEMDRRQEKRYLID  192 (389)
T ss_dssp             -CSTT--------CSHHHHHHHHHHHHTT-CEEEEEECTTC--CCTHHHHHHHHHHHTTTCCEEEEE
T ss_pred             -cCcH--------HHHHHHHHHHHhhcCC-CeEEEEEecCC--CCcHHHHHHHHHHHhCCCeEEEEE
Confidence             6654        4456788888888765 45543333221  234589999999986 57877654

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A

Probab=99.64  E-value=2.6e-16  Score=125.17  Aligned_cols=128  Identities=12%  Similarity=0.175  Sum_probs=83.6

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..++|.|||||.||..+..++.++..+++|+|+++++.   +++  .++++|+.|+   ++.++++++++|||+||++|+
T Consensus        57 i~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~~---~~~--~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~  128 (376)
T 3hsy_A           57 FSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT---DGT--HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY  128 (376)
T ss_dssp             HHTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCCC---CSC--CTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE
T ss_pred             HhcCcEEEECCCchhHHHHHHHHhccCcCceeecCCCC---ccc--CCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE
Confidence            35689999999999999999999999999999988743   333  4557899876   899999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccC-CChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET-VTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~-~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                       ++++        +...++.+.+.+.+.+ .+++....+.... .+..++..+|++++. .+++|++.
T Consensus       129 -d~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~  186 (376)
T 3hsy_A          129 -DSDR--------GLSTLQAVLDSAAEKK-WQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD  186 (376)
T ss_dssp             -CSTT--------CSHHHHHHHHHHHHHT-CEEEEEECTTCC--------------------CEEEEE
T ss_pred             -eCch--------hHHHHHHHHHHhhhcC-CeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEE
Confidence             6654        4456778888887764 3443322221100 124678889999885 57877654

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=99.62  E-value=9.3e-16  Score=132.46  Aligned_cols=128  Identities=12%  Similarity=0.167  Sum_probs=98.9

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..++|.||+||.||..+..++.++..+++|+|++..+  .   ...+++++|+.|+   ++.++++++++|||+||++||
T Consensus        57 ~~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~~--~---~~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~  128 (823)
T 3kg2_A           57 FSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP--T---DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY  128 (823)
T ss_dssp             HHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCC--C---SSCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE
T ss_pred             HhcCcEEEEcCCChhHHHHHHHHhhcCCCceeecccC--C---CCCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE
Confidence            3568999999999999999999999999999997432  1   2356788999998   789999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeecc-CCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEE-TVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~-~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                       ++++        +...++.+.+.+.+.+ ++++....+... ..+..++...|+++++ .+||||+.
T Consensus       129 -d~~~--------g~~~~~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~  186 (823)
T 3kg2_A          129 -DSDR--------GLSTLQAVLDSAAEKK-WQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD  186 (823)
T ss_dssp             -CGGG--------CTHHHHHHHHHHHHTT-CEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEE
T ss_pred             -eCCh--------hHHHHHHHHHHhhccC-CceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEE
Confidence             5543        4567888888888875 455544444321 0124578889999986 67887764

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}

Probab=99.57  E-value=2.3e-15  Score=119.90  Aligned_cols=125  Identities=12%  Similarity=0.181  Sum_probs=95.2

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..++|.||+||.||..+..++.++..+++|+|+++.+  .+ ++..|  .+|+.|+   ++.++++++++|||+||++|+
T Consensus        64 ~~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~~--~~-~~~~~--~~~~~p~---~~~a~~~~~~~~g~~~v~ii~  135 (384)
T 3saj_A           64 FSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP--VD-TSNQF--VLQLRPE---LQEALISIIDHYKWQTFVYIY  135 (384)
T ss_dssp             HHTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECSCC--CS-SCCTT--EEECSCC---CHHHHHHHHHHTTCCEEEEEE
T ss_pred             HhcCeEEEECCCCHHHHHHHHHHhccCCCCeEecccc--Cc-CccCc--eEEeccc---HHHHHHHHHHHCCCcEEEEEE
Confidence            3458999999999999999999999999999998532  23 33344  5777776   799999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                       ++++        +...++.+.+.+++.+ ++++... +..  .+..++..+|++++. .+++|++.
T Consensus       136 -d~~~--------g~~~~~~~~~~~~~~g-~~v~~~~-~~~--~~~~d~~~~l~~ik~~~~~vii~~  189 (384)
T 3saj_A          136 -DADR--------GLSVLQRVLDTAAEKN-WQVTAVN-ILT--TTEEGYRMLFQDLEKKKERLVVVD  189 (384)
T ss_dssp             -CSTT--------CSHHHHHHHHHHHHHT-CEEEEEE-GGG--CCHHHHHHTTTTCCSCSEEEEEEE
T ss_pred             -eCch--------hHHHHHHHHHHhhhcC-ceEEEEE-ecc--CCchhHHHHHHHHhccCCcEEEEE
Confidence             5554        4456788888887765 3544333 222  245679999998886 67887664

>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}

Probab=99.50  E-value=1.1e-13  Score=109.64  Aligned_cols=132  Identities=11%  Similarity=-0.015  Sum_probs=104.9

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.+||||.++..+..++.++..+++|+|++++..+.+.++..+|+++|+.|++..++.++++.+.+++|+++++|+.+
T Consensus        72 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~  151 (379)
T 3n0w_A           72 DGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPD  151 (379)
T ss_dssp             SCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             CCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecc
Confidence            78999999999999999999999999999999888888877667899999999999999999999999999999999886


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.+        +....+.+.+.+++.+ +.++....++.   ...++...+++++. ..++|++.
T Consensus       152 ~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~  204 (379)
T 3n0w_A          152 AAY--------GDLMNAAIRRELTAGG-GQIVGSVRFPF---ETQDFSSYLLQAKASGAQLIVST  204 (379)
T ss_dssp             SHH--------HHHHHHHHHHHHHHHT-CEEEEEEEECT---TCCCCHHHHHHHHHHTCSEEEEC
T ss_pred             cch--------hHHHHHHHHHHHHHcC-CEEEEEEeCCC---CCCCHHHHHHHHHHCCCCEEEEe
Confidence            643        4556777888887764 34444444543   22356667777763 56766553

>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}

Probab=99.49  E-value=5.2e-14  Score=111.72  Aligned_cols=133  Identities=10%  Similarity=-0.004  Sum_probs=103.7

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.+||||.++..+..++.++..+++|+|++++..+.+.++..+++++|+.|++..++.++++.+.+++|+++++|+.+
T Consensus        72 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~  151 (387)
T 3i45_A           72 HGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPN  151 (387)
T ss_dssp             HCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCS
T ss_pred             cCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            48999999999999999999999999999999888777776667899999999999999999999999999999999976


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCC-CCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPS-GSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.+        +....+.+.+.+++.+ ++.++....+..   ...++...++++++ ..++|++.
T Consensus       152 ~~~--------g~~~~~~~~~~l~~~~~g~~vv~~~~~~~---~~~d~~~~~~~i~~~~~d~v~~~  206 (387)
T 3i45_A          152 YEY--------GQSAVARFKELLLAARPEVTFVAEQWPAL---YKLDAGPTVQALQQAEPEGLFNV  206 (387)
T ss_dssp             SHH--------HHHHHHHHHHHHHHHCTTCEEEEEECCCT---TCCCHHHHHHHHHHTCCSEEEEC
T ss_pred             chH--------hHHHHHHHHHHHHHhCCCcEEEeeecCCC---CCcCHHHHHHHHHhCCCCEEEEc
Confidence            543        4556777777777651 223333333332   23467778887764 56776654

>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}

Probab=99.49  E-value=1.6e-13  Score=108.33  Aligned_cols=132  Identities=8%  Similarity=-0.003  Sum_probs=105.4

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.+||||.++..+..++.++..+++|+|++++..+.+.++..+|+++|+.|++..++.++++.+..++|+++++|+.+
T Consensus        70 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~  149 (375)
T 3i09_A           70 GGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTAD  149 (375)
T ss_dssp             SCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecc
Confidence            78999999999999999999999999999999888877877667899999999999999999999999999999999876


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.+        +....+.+.+.+++.+ +.++....+..   ...++...+++++. ..++|++.
T Consensus       150 ~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~  202 (375)
T 3i09_A          150 YAF--------GKALEKNTADVVKANG-GKVLGEVRHPL---SASDFSSFLLQAQSSKAQILGLA  202 (375)
T ss_dssp             SHH--------HHHHHHHHHHHHHHTT-CEEEEEEEECT---TCSCCHHHHHHHHHTCCSEEEEE
T ss_pred             cHH--------HHHHHHHHHHHHHHcC-CEEeeeeeCCC---CCccHHHHHHHHHhCCCCEEEEe
Confidence            643        4556778888888775 34444444443   22456677777764 56766553

>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}

Probab=99.49  E-value=2.5e-14  Score=114.70  Aligned_cols=132  Identities=8%  Similarity=-0.075  Sum_probs=103.0

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCC----CCCcccCCeeEEeeCChhhHHHHHHHHHHHc-------
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVAN----FELKFEYPTLTRMMGSFSLVGQAVQSILKNF-------   81 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~----l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f-------   81 (159)
                      +++.+||||.+|..+..++.++..+++|+|+.++....    ..+...|++++|+.|++..++.+++++++++       
T Consensus        82 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~  161 (419)
T 3h5l_A           82 DNASALIAGYNLENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFS  161 (419)
T ss_dssp             TCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCC
T ss_pred             cCCeEEEccccchhHHHhHHHHHHcCCeEEEcCcchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhcccc
Confidence            78999999999999999999999999999986543211    1233468999999999999999999999987       


Q ss_pred             -CCcEEEEEEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          82 -NWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        82 -~W~~v~~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                       +|+++++|+.++.+        +....+.+.+.+++.+ +.++....+..   +..++..++++++. .+++|++.
T Consensus       162 ~~~~~vail~~~~~~--------g~~~~~~~~~~~~~~g-~~vv~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~  226 (419)
T 3h5l_A          162 RPNNKIAIITGPGIY--------SVNIANAIRDGAGEYG-YDVSLFETVAI---PVSDWGPTLAKLRADPPAVIVVT  226 (419)
T ss_dssp             CSSSEEEEEECSSHH--------HHHHHHHHHHHGGGGT-CEEEEEEECCS---SCSCCHHHHHHHHHSCCSEEEEC
T ss_pred             CCCCEEEEEEcCcch--------hHHHHHHHHHHHHHcC-CeEEEEecCCC---CCccHHHHHHHHHhcCCCEEEEc
Confidence             99999999987653        5566778888888775 45554455543   23567888888875 67877764

>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B

Probab=99.46  E-value=1.8e-13  Score=108.39  Aligned_cols=131  Identities=8%  Similarity=-0.069  Sum_probs=104.1

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      .++.+||||.+|..+..++.++..+++|+|++.+.++.+.++..+++++|+.|++..+..+++.++++++| ++++|+.+
T Consensus        72 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~  150 (374)
T 3n0x_A           72 DGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQD  150 (374)
T ss_dssp             SCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEES
T ss_pred             CCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCC
Confidence            58999999999999999999999999999988777777777666899999999999999999999999999 79999987


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-C-----ceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-R-----ARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~-----aRIii~~  156 (159)
                      +.+        +....+.+.+.+++.+ ..++....++.   +..++..++++++. .     .++|++.
T Consensus       151 ~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~---~~~d~~~~l~~i~~~~~~~~~~d~v~~~  208 (374)
T 3n0x_A          151 YAF--------GRDGVAAFKEALAKTG-ATLATEEYVPT---TTTDFTAVGQRLFDALKDKPGKKIIWVI  208 (374)
T ss_dssp             SHH--------HHHHHHHHHHHHTTTT-CEEEEEEEECT---TCCCCHHHHHHHHHHHTTCSSEEEEEEC
T ss_pred             chH--------HHHHHHHHHHHHHHcC-CEEeeeecCCC---CCccHHHHHHHHHhcCCCCCCCCEEEEE
Confidence            653        5567788888888875 45555555543   23456777777764 3     6666553

>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*

Probab=99.44  E-value=5.4e-13  Score=104.71  Aligned_cols=129  Identities=8%  Similarity=-0.021  Sum_probs=101.5

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      +++.+||||.++..+..++.++..+++|+|++++..+.+.++  +++++|+.|++...+.++++.+..++|+++++|+.+
T Consensus        71 ~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~  148 (368)
T 4eyg_A           71 DKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITER--SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSD  148 (368)
T ss_dssp             SCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG--CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             CCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccC--CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            789999999999999999999999999999998877666654  789999999999999999999999999999999976


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      +.+        +....+.+.+.+++.+ +.++....+..   +..++...++++++ ..++|++
T Consensus       149 ~~~--------g~~~~~~~~~~l~~~g-~~v~~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~  200 (368)
T 4eyg_A          149 YAP--------GNDALAFFKERFTAGG-GEIVEEIKVPL---ANPDFAPFLQRMKDAKPDAMFV  200 (368)
T ss_dssp             SHH--------HHHHHHHHHHHHHHTT-CEEEEEEEECS---SSCCCHHHHHHHHHHCCSEEEE
T ss_pred             chH--------hHHHHHHHHHHHHHcC-CEEEEEEeCCC---CCCcHHHHHHHHHhcCCCEEEE
Confidence            532        5556788888888775 34444444443   22346667776664 5666665

>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A

Probab=99.41  E-value=1e-12  Score=103.35  Aligned_cols=135  Identities=13%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             ccc-eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570          10 GFV-VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus        10 ~~~-~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      ... ++++++|||.++..+..++.++..+++|+|++++..+.+.++..+++++|+.|++...+.++++.+..+||+++++
T Consensus        77 l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~  156 (375)
T 4evq_A           77 LIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVT  156 (375)
T ss_dssp             CCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEE
Confidence            444 4899999999999999999999999999999998877777766689999999999999999999999999999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      |+.++.        .+....+++.+.+++.+ +.++....+..   ...++...++++++ ..++|++.
T Consensus       157 i~~~~~--------~~~~~~~~~~~~l~~~G-~~v~~~~~~~~---~~~d~~~~~~~l~~~~~dai~~~  213 (375)
T 4evq_A          157 VTWKYA--------AGEEMVSGFKKSFTAGK-GEVVKDITIAF---PDVEFQSALAEIASLKPDCVYAF  213 (375)
T ss_dssp             EEESSH--------HHHHHHHHHHHHHHHTT-CEEEEEEEECT---TCCCCHHHHHHHHHHCCSEEEEE
T ss_pred             EecCch--------HHHHHHHHHHHHHHHcC-CeEEEEEecCC---CCccHHHHHHHHHhcCCCEEEEe
Confidence            987653        25556788888888875 34434444433   22345566666653 56777663

>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*

Probab=99.41  E-value=6.7e-13  Score=105.12  Aligned_cols=130  Identities=12%  Similarity=0.059  Sum_probs=104.5

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      +++|.+|+||.||..+..++.++..+++|+|++++..+.+..+  .++++|+.|++..+..+++..++..+|+++++|+.
T Consensus        70 ~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~--~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~  147 (371)
T 4f06_A           70 KEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK--SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVS  147 (371)
T ss_dssp             TSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG--CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhccc--CCcceecccchhhhhhhhhhhhhhcCceEEEEEcC
Confidence            4689999999999999999999999999999998887777654  36789999999999999999999999999999999


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      ++.+        +....+.+.+.+++.+ ..++....++.   ...|+...+.+++. .+.+|++
T Consensus       148 ~~~~--------g~~~~~~~~~~~~~~g-~~vv~~~~~~~---~~~d~~~~l~~i~~~~pd~v~~  200 (371)
T 4f06_A          148 DYGP--------GIDAETAFKKTFEAEG-GKVVEAVRMPL---STTDFGPIMQRIKNSGADMIFT  200 (371)
T ss_dssp             SSHH--------HHHHHHHHHHHHHHTT-CEEEEEEEECT---TCCCCHHHHHHHHHHTCSEEEE
T ss_pred             Cccc--------chhHHHHHHHHHHhcC-CceEEEEecCc---ccccHHHHHHHHHhcCCCEEEE
Confidence            8754        4455677778887775 35555555654   23467778888874 5676654

>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A

Probab=99.39  E-value=1.3e-12  Score=102.22  Aligned_cols=133  Identities=12%  Similarity=0.048  Sum_probs=101.7

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHH-HHHHcCCcEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQS-ILKNFNWTVAGFM   89 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~-ll~~f~W~~v~~i   89 (159)
                      ..+++.+||||.++..+..++.++..+++|+|++++..+.+.++ .+++++|+.|++..++.++++ |+++|+|+++++|
T Consensus        66 ~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii  144 (356)
T 3ipc_A           66 VADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTER-GLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAII  144 (356)
T ss_dssp             HHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSS-CCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             HHCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcC-CCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEE
Confidence            34789999999999999999999999999999988887777664 578999999999999999998 5677899999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.++.+        +....+.+.+.+++.+ +.++....+..   ...++...+++++. ..++|+++
T Consensus       145 ~~~~~~--------~~~~~~~~~~~l~~~g-~~v~~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~~  200 (356)
T 3ipc_A          145 HDKTPY--------GQGLADETKKAANAAG-VTEVMYEGVNV---GDKDFSALISKMKEAGVSIIYWG  200 (356)
T ss_dssp             ECSSHH--------HHHHHHHHHHHHHHTT-CCCSEEEECCT---TCCCCHHHHHHHHHTTCCEEEEE
T ss_pred             eCCChH--------HHHHHHHHHHHHHHcC-CEEEEEEeeCC---CCCCHHHHHHHHHhcCCCEEEEc
Confidence            976532        5556778888888775 44444444433   22345566666654 56666644

>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}

Probab=99.39  E-value=2.6e-12  Score=100.96  Aligned_cols=129  Identities=11%  Similarity=0.059  Sum_probs=101.7

Q ss_pred             eeeEEEECCCCchhHHHHHH--HHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVAR--YSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~--~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      +++.+||||.++..+..++.  ++..+++|+|++++..+.+.+   +++++|+.|++...+.++++.+..+||+++++|+
T Consensus        72 ~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~  148 (364)
T 3lop_A           72 DNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTT---DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLY  148 (364)
T ss_dssp             SCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS---CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             cCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc---CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEE
Confidence            48999999999999999999  999999999998877665554   7889999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      .++.+        +....+.+.+.+++.+ +.++....+..   ...++...+++++. ..++|+++
T Consensus       149 ~~~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~~---~~~d~~~~~~~l~~~~~d~v~~~  203 (364)
T 3lop_A          149 QEDAL--------GKEAITGVERTLKAHA-LAITAMASYPR---NTANVGPAVDKLLAADVQAIFLG  203 (364)
T ss_dssp             ETTHH--------HHHHHHHHHHHHHTTT-CCCSEEEEECT---TSCCCHHHHHHHHHSCCSEEEEE
T ss_pred             eCchh--------hHHHHHHHHHHHHHcC-CcEEEEEEecC---CCccHHHHHHHHHhCCCCEEEEe
Confidence            86542        5567788888888875 45554455543   22356667777664 56666654

>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}

Probab=99.37  E-value=2.4e-12  Score=101.14  Aligned_cols=129  Identities=13%  Similarity=0.018  Sum_probs=98.4

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFMFN   91 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i~~   91 (159)
                      +++.+||||.++..+..++.++..+++|+|++++..+.+.+  .+++++|+.|++..++.++++.+ +++||+++++||.
T Consensus        80 ~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~  157 (366)
T 3td9_A           80 EKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ--GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTD  157 (366)
T ss_dssp             SCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT--TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEE
T ss_pred             CCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccC--CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence            35999999999999999999999999999999887766654  46899999999999999999998 6789999999987


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEe
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKS  155 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~  155 (159)
                      .++.       .+....+.+.+.+++.+ +.++... +..   +..++...+++++. ..++|++
T Consensus       158 ~~~~-------~~~~~~~~~~~~~~~~G-~~v~~~~-~~~---~~~d~~~~~~~l~~~~~d~v~~  210 (366)
T 3td9_A          158 VEQD-------YSVGLSNFFINKFTELG-GQVKRVF-FRS---GDQDFSAQLSVAMSFNPDAIYI  210 (366)
T ss_dssp             TTCH-------HHHHHHHHHHHHHHHTT-CEEEEEE-ECT---TCCCCHHHHHHHHHTCCSEEEE
T ss_pred             CCCc-------HHHHHHHHHHHHHHHCC-CEEEEEE-eCC---CCccHHHHHHHHHhcCCCEEEE
Confidence            4321       24456677888888775 3444444 543   23356666777664 5677766

>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A

Probab=99.33  E-value=5.6e-12  Score=97.95  Aligned_cols=132  Identities=11%  Similarity=0.131  Sum_probs=97.6

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHH-HHcCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSIL-KNFNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll-~~f~W~~v~~i~   90 (159)
                      .++++++|||.++..+..++.++..+++|+|++++.++.+.++ .+++++|+.|++..++.++++.+ +++||+++++|+
T Consensus        67 ~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~  145 (346)
T 1usg_A           67 NDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQR-GYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIH  145 (346)
T ss_dssp             HTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSS-CCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEE
T ss_pred             hCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcC-CCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            4689999999999888888899999999999988776666554 37889999999999999999988 568999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      .++.        .+....+.+.+.+++.+ +.++....+...   ..++.+.++++++ ..++|++.
T Consensus       146 ~~~~--------~~~~~~~~~~~~l~~~g-~~v~~~~~~~~~---~~d~~~~~~~l~~~~~d~i~~~  200 (346)
T 1usg_A          146 DKQQ--------YGEGLARSVQDGLKAAN-ANVVFFDGITAG---EKDFSALIARLKKENIDFVYYG  200 (346)
T ss_dssp             CSSH--------HHHHHHHHHHHHHHHTT-CCEEEEEECCTT---CCCCHHHHHHHHHTTCCEEEEE
T ss_pred             CCCc--------hHHHHHHHHHHHHHHcC-CEEEEEeccCCC---CcCHHHHHHHHHhcCCCEEEEc
Confidence            7543        24456777778887764 344333344331   2244556666653 56777664

>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}

Probab=99.33  E-value=1e-11  Score=97.20  Aligned_cols=131  Identities=12%  Similarity=0.046  Sum_probs=99.8

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      .+++++||||.++..+..++.++..+++|+|++++..+.+.++.  ++++|+.|++...+.++++.+...||+++++|+.
T Consensus        70 ~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~  147 (358)
T 3hut_A           70 DPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS--PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGV  147 (358)
T ss_dssp             CTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC--TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCC--CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEec
Confidence            67899999999999888899999999999999888776666543  7899999999999999999998889999999996


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++.        .+....+.+.+.+++.+ +.++....+..   ...++...++++++ ..++|++.
T Consensus       148 ~~~--------~~~~~~~~~~~~l~~~g-~~v~~~~~~~~---~~~~~~~~~~~l~~~~~d~i~~~  201 (358)
T 3hut_A          148 TTD--------WGLSSAQAFRKAFELRG-GAVVVNEEVPP---GNRRFDDVIDEIEDEAPQAIYLA  201 (358)
T ss_dssp             SSH--------HHHHHHHHHHHHHHHTT-CEEEEEEEECT---TCCCCHHHHHHHHHHCCSEEEEE
T ss_pred             CcH--------HHHHHHHHHHHHHHHcC-CEEEEEEecCC---CCccHHHHHHHHHhcCCCEEEEc
Confidence            553        25567788888888775 34444444433   22345556666653 45555544

>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*

Probab=99.33  E-value=6.1e-12  Score=99.01  Aligned_cols=132  Identities=9%  Similarity=0.030  Sum_probs=100.1

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCC-cccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFEL-KFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~-~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      +++++||||.++..+..++.++..+++|+|++++..+.+.+ ...+++++|+.|++...+.++++.+..+||+++++|+.
T Consensus        88 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~  167 (386)
T 3sg0_A           88 EKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGF  167 (386)
T ss_dssp             SCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEec
Confidence            37999999999999999999999999999998887666653 44678999999999999999999999999999999987


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++.+        +....+.+.+.+++.+ +.++....+...   ..++...++++++ ..++|++.
T Consensus       168 ~~~~--------~~~~~~~~~~~l~~~g-~~v~~~~~~~~~---~~d~~~~~~~~~~~~~dav~~~  221 (386)
T 3sg0_A          168 SDAY--------GEGYYKVLAAAAPKLG-FELTTHEVYARS---DASVTGQVLKIIATKPDAVFIA  221 (386)
T ss_dssp             SSHH--------HHHHHHHHHHHHHHHT-CEECCCEEECTT---CSCCHHHHHHHHHTCCSEEEEE
T ss_pred             CchH--------HHHHHHHHHHHHHHcC-CEEEEEEeeCCC---CCcHHHHHHHHHhcCCCEEEEe
Confidence            6542        5556777888887764 344333444432   2345566666653 45666544

>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}

Probab=99.19  E-value=7e-11  Score=93.80  Aligned_cols=128  Identities=11%  Similarity=-0.020  Sum_probs=97.2

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGFMF   90 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~i~   90 (159)
                      .++|.+||| .++..+..++.++..+++|+|+.++... +.   .+++++|+.|++..++.++++.+.. |+|+++++|+
T Consensus        74 ~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~---~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~  148 (391)
T 3eaf_A           74 RYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAK-LL---VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAY  148 (391)
T ss_dssp             TTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT---TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             hcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchh-hc---CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence            578999999 5888888899999999999999776543 22   4688999999999999999998877 7999999999


Q ss_pred             E-eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHH--Hhc-CceEEEee
Q psy8570          91 N-NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIA--ITK-RARIIKSL  156 (159)
Q Consensus        91 ~-~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~--~~~-~aRIii~~  156 (159)
                      . ++.+        +....+.+.+.+++.+ +.++....+..   ...++...+++  ++. ...+|++.
T Consensus       149 ~~~~~~--------g~~~~~~~~~~l~~~G-~~v~~~~~~~~---~~~d~~~~~~~~~l~~~~~dav~~~  206 (391)
T 3eaf_A          149 DSKVAY--------SRSPIGAIKKAAPSLG-LQVVGDYDLPL---RATEADAERIAREMLAADPDYVWCG  206 (391)
T ss_dssp             CTTCHH--------HHTTHHHHHHHTGGGT-EEEEEEEECCT---TCCHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             ecCChh--------HHHHHHHHHHHHHHcC-CceeeeeccCC---CCcCHHHHHHHHHHHHcCCCEEEEe
Confidence            8 5432        5566788888888775 34444344433   33467788877  765 56766654

>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}

Probab=99.14  E-value=1.1e-10  Score=92.60  Aligned_cols=130  Identities=8%  Similarity=-0.047  Sum_probs=95.1

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH-cCCcEEEEEEE
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN-FNWTVAGFMFN   91 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~-f~W~~v~~i~~   91 (159)
                      .+|.+||| .++..+..++.++...++|+|+..+.. .+.++..+++++|+.|++..++.++++.+.. ++|+++++|+.
T Consensus        74 ~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~  151 (392)
T 3lkb_A           74 FKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHI-ELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVH  151 (392)
T ss_dssp             TCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCG-GGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             cCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccCh-hhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            38999999 578888888999999999999976543 3444446788999999999999999988766 79999999997


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++.+        +....+.+.+.+++.+ +.++....+..   ...++...++++++ ...+|++.
T Consensus       152 ~~~~--------g~~~~~~~~~~l~~~G-~~v~~~~~~~~---~~~d~~~~~~~l~~~~~dav~~~  205 (392)
T 3lkb_A          152 PSPF--------GRAPVEDARKAARELG-LQIVDVQEVGS---GNLDNTALLKRFEQAGVEYVVHQ  205 (392)
T ss_dssp             SSHH--------HHTTHHHHHHHHHHHT-CEEEEEEECCT---TCCCCHHHHHHHHHTTCCEEEEE
T ss_pred             CCch--------hhhHHHHHHHHHHHcC-CeEEEEEeeCC---CCcCHHHHHHHHHhcCCCEEEEe
Confidence            6542        4556777888887764 34444444433   22356666777664 56666653

>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}

Probab=99.02  E-value=1.7e-09  Score=84.45  Aligned_cols=130  Identities=12%  Similarity=0.043  Sum_probs=91.0

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      +.++.+++||.||..+..++.++..+++|+|++++..+.+.+.  .++++|+.|++..++.+++..+...+|.+..+++.
T Consensus        73 ~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (353)
T 4gnr_A           73 QSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKG--QDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYT  150 (353)
T ss_dssp             TSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTTT--CTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEE
T ss_pred             hCCceEEeccccCcccceehhhhhccCcceEeecccccccccC--CccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            4568899999999999999999999999999999888877654  45679999999999999999988766655445444


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++..      ..+....+.+.+.+   + ..++....+..   ...|+...+.+++. .+++|++.
T Consensus       151 ~~~~------~yg~~~~~~~~~~~---g-~~vv~~~~~~~---~~~d~~~~l~~i~~~~~d~v~~~  203 (353)
T 4gnr_A          151 DNAS------DYAKGIAKSFRESY---K-GEIVADETFVA---GDTDFQAALTKMKGKDFDAIVVP  203 (353)
T ss_dssp             ETTC------HHHHHHHHHHHHHC---C-SEEEEEEEECT---TCCCCHHHHHHHHTSCCSEEECC
T ss_pred             cCch------HHHHHHHHHHHHHc---C-CEEEEEEeeCC---CCCCHHHHHHHHHhcCCCEEEEe
Confidence            4321      01222233333222   2 24455555554   23467788888875 67877654

>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A

Probab=98.96  E-value=1e-08  Score=81.10  Aligned_cols=130  Identities=9%  Similarity=-0.089  Sum_probs=94.5

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEEe
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFNN   92 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~~   92 (159)
                      ++++++|||.++..+..+..++..+++|+|+.+...    +...+++++|+.+++...+..+++.+...+|+++++|+.+
T Consensus        74 ~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~  149 (385)
T 1pea_A           74 RGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYE----GFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSD  149 (385)
T ss_dssp             TCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCC----CCCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEES
T ss_pred             CCcEEEECCCchHHHHHHHHHHHhcCceEEECCccc----CccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCC
Confidence            789999999998877788888999999999877542    1123567899999999999999999998899999999975


Q ss_pred             CCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          93 YGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      +.        .+....+++.+.+++.+ +.++....+... ....++...++++++ ..++|++.
T Consensus       150 ~~--------~~~~~~~~~~~~l~~~G-~~v~~~~~~~~~-~~~~d~~~~~~~l~~~~pdaI~~~  204 (385)
T 1pea_A          150 YI--------YPRESNHVMRHLYRQHG-GTVLEEIYIPLY-PSDDDLQRAVERIYQARADVVFST  204 (385)
T ss_dssp             SH--------HHHHHHHHHHHHHHHTT-CEEEEEEEECSS-CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             Ch--------HHHHHHHHHHHHHHHcC-CEEEEEEeecCC-CCcchHHHHHHHHHHCCCCEEEEe
Confidence            42        24456777888887764 333322233221 145577778877764 56666654

>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1

Probab=98.38  E-value=1.9e-06  Score=66.82  Aligned_cols=108  Identities=10%  Similarity=0.013  Sum_probs=78.2

Q ss_pred             cceeeEEEECCCCchhHHHHHHH-HhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARY-SGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM   89 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~-~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i   89 (159)
                      ...++.+||||.++..+..++.. +....+|+++.......    ...+.++|+.+++..++.+++..+..-++++++++
T Consensus        55 ~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~----~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii  130 (327)
T 3ckm_A           55 KQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNS----RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVA  130 (327)
T ss_dssp             HHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTC----CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEE
T ss_pred             HHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCccc----ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEE
Confidence            35689999999998877665554 45556777665443322    12356799999999999999999999999999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeec
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE  131 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~  131 (159)
                      +.++++        +....+.+.+.+++.+. .++....+..
T Consensus       131 ~~~~~y--------g~~~~~~f~~~~~~~Gg-~vv~~~~~~~  163 (327)
T 3ckm_A          131 MPQNDL--------GQRVGNAFNVRWQQLAG-TDANIRYYNL  163 (327)
T ss_dssp             EESSHH--------HHHHHHHHHHHHHHHHS-SCCEEEEESS
T ss_pred             ecCChH--------HHHHHHHHHHHHHHCCC-eEEEEEECCC
Confidence            998764        45566777777777652 4555555543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=90.46  E-value=0.2  Score=36.68  Aligned_cols=37  Identities=14%  Similarity=-0.044  Sum_probs=31.8

Q ss_pred             ccceeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570          10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG   46 (159)
Q Consensus        10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~   46 (159)
                      .-+.+++.++||+.+.=......++..+++|+|+.|-
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGd   62 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGD   62 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHH
Confidence            3456788999999999888888999999999998763

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=88.83  E-value=4.4  Score=29.52  Aligned_cols=95  Identities=7%  Similarity=-0.008  Sum_probs=55.6

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ..+++++|....+.....+..+....++|+|..+....   + .   .+..+...+...+...++.|..-|.++++++..
T Consensus        75 ~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~---~-~---~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~  147 (296)
T 3brq_A           75 DLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLR---K-N---SSHSVWCDHKQTSFNAVAELINAGHQEIAFLTG  147 (296)
T ss_dssp             HTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCS---S-S---GGGEECCCHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred             hcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEccccC---C-C---CCCEEEEchHHHHHHHHHHHHHCCCceEEEEcC
Confidence            45677777543332233344443327999998764322   1 1   123455666666666666666669999999976


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPS  119 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~  119 (159)
                      ....      .....+.++..+.+++.+
T Consensus       148 ~~~~------~~~~~R~~gf~~~l~~~g  169 (296)
T 3brq_A          148 SMDS------PTSIERLAGYKDALAQHG  169 (296)
T ss_dssp             CTTC------HHHHHHHHHHHHHHHTTT
T ss_pred             CCCC------ccHHHHHHHHHHHHHHcC
Confidence            4321      123456777777777764

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=87.91  E-value=3.1  Score=30.39  Aligned_cols=93  Identities=12%  Similarity=0.037  Sum_probs=60.2

Q ss_pred             ceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHH--cCCcEEEE
Q psy8570          12 VVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKN--FNWTVAGF   88 (159)
Q Consensus        12 ~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~--f~W~~v~~   88 (159)
                      ..+++++| .|..+.........+...++|+|..+....   +     .+..+...+...++..++.|..  -|-+++++
T Consensus        59 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~-----~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~  130 (291)
T 3l49_A           59 AQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP---H-----AINNTTSNNYSIGAELALQMVADLGGKGNVLV  130 (291)
T ss_dssp             HHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT---T-----CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC---C-----cCceEecChHHHHHHHHHHHHHHcCCCceEEE
Confidence            45677766 565544455555666667999998775431   1     2345666777777777777766  78899999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCC
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSP  118 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  118 (159)
                      +....+      ......+.+++.+.+++.
T Consensus       131 i~~~~~------~~~~~~R~~gf~~~l~~~  154 (291)
T 3l49_A          131 FNGFYS------VPVCKIRYDQMKYVLEAF  154 (291)
T ss_dssp             ECSCTT------SHHHHHHHHHHHHHHHTC
T ss_pred             EeCCCC------CchHHHHHHHHHHHHHHC
Confidence            964332      122344677888888776

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=87.68  E-value=0.37  Score=34.78  Aligned_cols=31  Identities=23%  Similarity=0.236  Sum_probs=27.4

Q ss_pred             EEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570          16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGG   46 (159)
Q Consensus        16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~   46 (159)
                      ..++||+.+.=......++..+++|+||.|-
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~g~~~istGd   33 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGD   33 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeEEcHHH
Confidence            5788999998888889999999999998763

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=86.40  E-value=7.1  Score=28.67  Aligned_cols=100  Identities=11%  Similarity=0.043  Sum_probs=63.8

Q ss_pred             cceeeEEEE-CCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcC--CcEEE
Q psy8570          11 FVVCVDAFL-GPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFN--WTVAG   87 (159)
Q Consensus        11 ~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~--W~~v~   87 (159)
                      ...+++++| .|............+...++|+|..+.......   ..+.+..+...+...++..++.|..-+  -++++
T Consensus        58 ~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~---~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~  134 (297)
T 3rot_A           58 LATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKT---KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRAL  134 (297)
T ss_dssp             HHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTT---TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             HHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCcccc---ccCcceEEccChHHHHHHHHHHHHHhcCCCceEE
Confidence            345677666 666555445555666677999998775433211   112345566777777777777776666  88999


Q ss_pred             EEEEeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570          88 FMFNNYGQTTGKGNSNCWFTIASVYKIITSPS  119 (159)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  119 (159)
                      ++....+      ......+.++..+.+++.+
T Consensus       135 ~i~g~~~------~~~~~~R~~Gf~~~l~~~g  160 (297)
T 3rot_A          135 VLNPQPG------HIGLEKRAYGIKTILQDKG  160 (297)
T ss_dssp             EEESCTT------CHHHHHHHHHHHHHHHHTT
T ss_pred             EEeCCCC------cHHHHHHHHHHHHHHHhcC
Confidence            9875432      1234456788888888764

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=83.39  E-value=10  Score=27.44  Aligned_cols=96  Identities=14%  Similarity=0.052  Sum_probs=52.8

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      ..+++++|.-........+..+....++|+|..+.....    ..+  ...+.+.+...+...++.|...|.++++++..
T Consensus        61 ~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~----~~~--~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~  134 (289)
T 1dbq_A           61 QKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAK----ADF--TDAVIDNAFEGGYMAGRYLIERGHREIGVIPG  134 (289)
T ss_dssp             HTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCC----SSS--CEEEEECHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred             hCCCCEEEEEeccCCHHHHHHHHhccCCCEEEEccCCCc----cCc--CCEEEeCcHHHHHHHHHHHHHCCCCeEEEEec
Confidence            456777764222222222333333368999987653221    111  23456666667777777666669999999975


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPS  119 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~  119 (159)
                      ..+.      .....+.+++.+.+++.+
T Consensus       135 ~~~~------~~~~~R~~g~~~~l~~~g  156 (289)
T 1dbq_A          135 PLER------NTGAGRLAGFMKAMEEAM  156 (289)
T ss_dssp             C------------CHHHHHHHHHHHHTT
T ss_pred             CCcc------ccHHHHHHHHHHHHHHCC
Confidence            4321      112345667777776653

>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=82.36  E-value=12  Score=26.97  Aligned_cols=95  Identities=11%  Similarity=0.051  Sum_probs=53.6

Q ss_pred             eccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEE
Q psy8570           9 TGFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGF   88 (159)
Q Consensus         9 ~~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~   88 (159)
                      ....++++++|......... ....+...++|+|..+....   +      +..+...+...++..++.|...|-+++++
T Consensus        50 ~l~~~~vdgiI~~~~~~~~~-~~~~~~~~~iPvV~~~~~~~---~------~~~V~~d~~~~~~~a~~~L~~~G~~~i~~  119 (276)
T 2h0a_A           50 TTLAYLTDGLILASYDLTER-FEEGRLPTERPVVLVDAQNP---R------YDSVYLDNRLGGRLAGAYLARFPGPIFAI  119 (276)
T ss_dssp             ----CCCSEEEEESCCCC-------CCSCSSCEEEESSCCT---T------SEEEEECSHHHHHHHHHHHTTSSSCEEEE
T ss_pred             HHHhCCCCEEEEecCCCCHH-HHHHHhhcCCCEEEEeccCC---C------CCEEEEccHHHHHHHHHHHHHcCCCeEEE
Confidence            33456777776433322222 22334557899998764321   1      34566666667777777776679999999


Q ss_pred             EEEeC-C---CcCCCCCCchH-hHHHHHHHHHcCCC
Q psy8570          89 MFNNY-G---QTTGKGNSNCW-FTIASVYKIITSPS  119 (159)
Q Consensus        89 i~~~~-~---~~~~~~~~~~~-~~~~~L~~~l~~~~  119 (159)
                      +.... +   .      .... .+.++..+.+++.+
T Consensus       120 i~~~~~~~~~~------~~~~~~R~~gf~~~l~~~g  149 (276)
T 2h0a_A          120 AVEEEPDRAFR------RTVFAERMAGFQEALKEAG  149 (276)
T ss_dssp             EECCSCCC---------CCHHHHHHHHHHHHHHHTT
T ss_pred             EecCccccccc------chhHHHHHHHHHHHHHHcC
Confidence            97653 2   1      1244 56777777776653

>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}

Probab=82.17  E-value=3.3  Score=30.33  Aligned_cols=93  Identities=12%  Similarity=0.036  Sum_probs=55.7

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ...+++++|..........+..+   .++|+|..+.....       +.+..+...+...++..++.|..-|-++++++.
T Consensus        60 ~~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~-------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~  129 (288)
T 2qu7_A           60 VSQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELES-------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLL  129 (288)
T ss_dssp             HHTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSS-------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred             HHcCccEEEEecCCCChHHHHHh---cCCCEEEEecccCC-------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEe
Confidence            34678888765443222222233   78999987653221       123455667777777777777667999999997


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPS  119 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  119 (159)
                      ...+.      .....+.+++.+.+++.+
T Consensus       130 ~~~~~------~~~~~R~~gf~~~l~~~g  152 (288)
T 2qu7_A          130 ANPNI------STTIGRKNGYNKAISEFD  152 (288)
T ss_dssp             CCTTS------HHHHHHHHHHHHHHHHTT
T ss_pred             cCCCC------CCHHHHHHHHHHHHHHcC
Confidence            64321      123445677777776653

>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}

Probab=80.52  E-value=11  Score=27.42  Aligned_cols=94  Identities=10%  Similarity=-0.094  Sum_probs=52.7

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ...+++++|..........+. .+...++|+|..+.....       + +..+...+...++..++.|..-|-++++++.
T Consensus        62 ~~~~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~~~~~~~~-------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~  132 (290)
T 3clk_A           62 IERPVMGILLLSIALTDDNLQ-LLQSSDVPYCFLSMGFDD-------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAG  132 (290)
T ss_dssp             HSSCCSEEEEESCC----CHH-HHHCC--CEEEESCC--C-------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEES
T ss_pred             HhcCCCEEEEecccCCHHHHH-HHHhCCCCEEEEcCCCCC-------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEe
Confidence            345677776433322222233 344578999987653221       1 3345667767777777777667999999997


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCC
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPS  119 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  119 (159)
                      ...+      ......+.+++.+.+++.+
T Consensus       133 ~~~~------~~~~~~R~~gf~~~l~~~g  155 (290)
T 3clk_A          133 IDQY------PYTGRKRLAGYKKALKEAN  155 (290)
T ss_dssp             CCCC------TTTHHHHHHHHHHHHHHTT
T ss_pred             CCCC------CcchHHHHHHHHHHHHHcC
Confidence            5432      1224456777777776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1ewka_	477	c.93.1.1 (A:) Metabotropic glutamate receptor subt	2e-07
d1dp4a_	425	c.93.1.1 (A:) Hormone binding domain of the atrial	4e-05
d1jdpa_	401	c.93.1.1 (A:) Hormone binding domain of the atrial	6e-05

>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 22/117 (18%), Positives = 41/117 (35%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
           +   +GP    V   V     ++ IP +       +   K  Y    R++ S +L  +A+
Sbjct: 121 IAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAM 180

Query: 75  QSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDE 131
             I+K +NWT    +           ++           I  S    ++   +SFD 
Sbjct: 181 LDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDR 237

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (93), Expect = 4e-05
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAV 74
              FLGP C Y  APV R++  W +P+LTAG       +K EY   TR   S   +G  V
Sbjct: 78  PAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFV 137

Query: 75  QSILKNFNWTVAGFMF--NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEE 132
            ++ +   W     +   +  G      +  C+F +  +Y  +           E  + +
Sbjct: 138 TALHRRLGWEHQALVLYADRLGD-----DRPCFFIVEGLYMRVRERLNITVNHQEFVEGD 192

Query: 133 TVTPEKLKEQL 143
                KL   +
Sbjct: 193 PDHYPKLLRAV 203

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-05
 Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 15  VDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFE-YPTLTRMMGSFSLVGQA 73
            D  LGPVC+Y  APVAR +  W +P+L+AG L A F+ K   Y  LTR+  +++ +G+ 
Sbjct: 83  PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEM 142

Query: 74  VQSILKNFNWTVAGFMFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEET 133
           + ++ ++ +W+ A  ++++         +          + + +   S D   +   E+ 
Sbjct: 143 MLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDI 202

Query: 134 VTPEKLKEQLIAI 146
           V   +  E+++ +
Sbjct: 203 VRNIQASERVVIM 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1ewka_	477	Metabotropic glutamate receptor subtype 1 {Rat (Ra	99.94
d1dp4a_	425	Hormone binding domain of the atrial natriuretic p	99.81
d1jdpa_	401	Hormone binding domain of the atrial natriuretic p	99.74
d1usga_	346	Leucine-binding protein {Escherichia coli [TaxId:	99.17
d1qo0a_	373	Amide receptor/negative regulator of the amidase o	99.0
d3ckma1	317	YraM C-terminal domain {Haemophilus influenzae [Ta	98.57
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	93.36
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	89.87
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	89.67
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	89.49
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	88.74
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	85.07
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	84.62
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	83.58
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	82.66

>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.7e-26  Score=187.47  Aligned_cols=136  Identities=15%  Similarity=0.199  Sum_probs=117.6

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMF   90 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~   90 (159)
                      ..++++|||||.||.++..+|.+++.|++|+|+++++++.++|+..||+|+||.|++..+++|+++|++||||++|++|+
T Consensus       117 ~~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~~~yp~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~  196 (477)
T d1ewka_         117 TKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVH  196 (477)
T ss_dssp             --CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             cccceEEEECCCcchhHHHHHHHhhhccCceeccccCCccccccccCCceEEecccchhhHHHHHHHHHHcCCcEEEEEE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc---CceEEEee
Q psy8570          91 NNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK---RARIIKSL  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~---~aRIii~~  156 (159)
                      +++++        +...++.+.+++++.+ +++.....+... .+..++.++++++++   .+||||++
T Consensus       197 ~~d~~--------g~~~~~~l~~~~~~~~-i~v~~~~~i~~~-~~~~~~~~~l~~l~~~~~~~rVIv~~  255 (477)
T d1ewka_         197 TEGNY--------GESGMDAFKELAAQEG-LCIAHSDKIYSN-AGEKSFDRLLRKLRERLPKARVVVCF  255 (477)
T ss_dssp             ESSHH--------HHHHHHHHHHHHHHHT-CEEEEEEEECTT-CCHHHHHHHHHHHHTTTTTCCEEEEE
T ss_pred             ecchh--------HHHHHHHHHHHHHHcC-cEEEEEeeccCC-CchhhHHHHHHHHhhhccCceEEEEe
Confidence            98764        5567788888888875 677666777553 356778888888874   57988765

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=5.9e-20  Score=144.41  Aligned_cols=140  Identities=25%  Similarity=0.470  Sum_probs=112.1

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      .++|.|||||.||..+..++.++..+++|+|+++++++.++++..||+|+|+.|++..+..++++++++|+|+++++++.
T Consensus        75 ~~~V~aiiG~~~S~~~~~v~~~~~~~~ip~is~~st~~~ls~~~~~~~~~r~~p~~~~~~~~~~~~l~~~~~~~vaii~~  154 (425)
T d1dp4a_          75 EHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLY  154 (425)
T ss_dssp             HHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             cCCCeEEECCCChHHhhhhhhhhHhhCCeEEeeecccccccccccCCccccccccchHHHHHHHHHHHhccCceEEEEEe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEeee
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSLD  157 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~~  157 (159)
                      +++++   .+..+.+..+...+....... ..+....+..  .+.+++.++++.++...++|+++.
T Consensus       155 ~d~~g---~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~vi~~~  214 (425)
T d1dp4a_         155 ADRLG---DDRPCFFIVEGLYMRVRERLN-ITVNHQEFVE--GDPDHYPKLLRAVRRKGRVIYICS  214 (425)
T ss_dssp             ECCSS---SCCHHHHHHHHHHHHHHHHHC-CEEEEEEECT--TCGGGHHHHHHHHHHHCSEEEEES
T ss_pred             ccccc---cchhhHHHHHHHHHHHHHhcc-eEEeeeeecC--CchhHHHHHHHHhhhcceeEEEec
Confidence            99874   223355555555555544332 2233333333  356778888888887777766553

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.8e-18  Score=131.58  Aligned_cols=137  Identities=30%  Similarity=0.600  Sum_probs=106.2

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCc-ccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELK-FEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM   89 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~-~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i   89 (159)
                      ...++.++|||.||..+..++.++..+++|+|+++++++.+.+. ..||+++|+.|++..++.++++++++++|+++++|
T Consensus        79 ~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il  158 (401)
T d1jdpa_          79 RGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALV  158 (401)
T ss_dssp             TTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             ccCCcEEEECCCCcchhHHHHHHHHhcCCceeeccccccccccccccCCeEEEeccchHHHHHHHHHHHHhcCCcEEEEE
Confidence            35789999999999999999999999999999999988887764 57999999999999999999999999999999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhcCceEEEee
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITKRARIIKSL  156 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~~aRIii~~  156 (159)
                      +.+++++     +++...++.+.+.+....  .......+..  .+..+...+++.++...+++|++
T Consensus       159 ~~~d~~g-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iv~~  216 (401)
T d1jdpa_         159 YSDDKLE-----RNCYFTLEGVHEVFQEEG--LHTSIYSFDE--TKDLDLEDIVRNIQASERVVIMC  216 (401)
T ss_dssp             EECCSSS-----CHHHHHHHHHHHHHHHHT--CEEEEEEECT--TSCCCHHHHHHHHHHHCSEEEEE
T ss_pred             EecCccc-----chHHHHHHHHHHHhccce--EEEEeecccc--CchhHHHHHHHhhccCceeEEEE
Confidence            9998763     345555666666665543  2222223322  23445666777776666666654

>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Leucine-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=3.3e-11  Score=91.74  Aligned_cols=134  Identities=12%  Similarity=0.120  Sum_probs=101.6

Q ss_pred             ccceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHH-HHHcCCcEEEE
Q psy8570          10 GFVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSI-LKNFNWTVAGF   88 (159)
Q Consensus        10 ~~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~l-l~~f~W~~v~~   88 (159)
                      ...+++++++||.|+..+..++.++..+++|++++++.++.+..+ .+++++|+.|+.......++.. .++++|+++++
T Consensus        65 li~~~~~~vig~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~i  143 (346)
T d1usga_          65 IVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQR-GYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAI  143 (346)
T ss_dssp             HHHTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSS-CCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEE
T ss_pred             HHhcCCccccCCccCccchhhhhhhhhccccccccccCChhhhcc-CccccccccccchhHHHHHHhhhhhccccceeEE
Confidence            345678899999999999999999999999999999888777654 4688899999999988888886 56788999999


Q ss_pred             EEEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEEee
Q psy8570          89 MFNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIKSL  156 (159)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii~~  156 (159)
                      ++.++.+        +....+.+.+.+++.+ ..++....++.   ...++...+++++. ..++|++.
T Consensus       144 ~~~~~~~--------g~~~~~~~~~~~~~~g-~~i~~~~~~~~---~~~d~~~~~~~i~~~~~d~v~~~  200 (346)
T d1usga_         144 IHDKQQY--------GEGLARSVQDGLKAAN-ANVVFFDGITA---GEKDFSALIARLKKENIDFVYYG  200 (346)
T ss_dssp             EECSSHH--------HHHHHHHHHHHHHHTT-CCEEEEEECCT---TCCCCHHHHHHHHHTTCCEEEEE
T ss_pred             ecCchhh--------hHHHHHHHhhhhhccc-ceEEEEEecCc---cccchhhHHHHhhccCCCEEEEe
Confidence            9987643        3445566666676664 35555555543   23467778888875 46766554

>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Amide receptor/negative regulator of the amidase operon (AmiC)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.00  E-value=3.7e-09  Score=81.59  Aligned_cols=129  Identities=9%  Similarity=-0.084  Sum_probs=98.1

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEEEE
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFMFN   91 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i~~   91 (159)
                      +++|.+++||.+|..+..++.++...++|+++..+...    ....++++|+.|++..+...++..+...+|+++++++.
T Consensus        67 ~~~V~aiiG~~~S~~~~av~~~~~~~~vp~i~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~  142 (373)
T d1qo0a_          67 NRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEG----FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGS  142 (373)
T ss_dssp             HSCCCEEEECCSHHHHHHHHHHHHHHTCEEEECSCCCC----CCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEE
T ss_pred             hCCceEEEechhhhhhhhhHHHHHHhCCcEEecccccc----cccCCceeeeccChHHHHHHHHHHHHhccCceeeeccC
Confidence            56899999999999999999999999999997654332    23457889999999999999999999999999999999


Q ss_pred             eCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeeeccCCChHHHHHHHHHHhc-CceEEE
Q psy8570          92 NYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFDEETVTPEKLKEQLIAITK-RARIIK  154 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~~~~-~aRIii  154 (159)
                      ++.+        +....+.+.+.+++.+ ..++....++. .....++...+.++++ ...+++
T Consensus       143 d~~~--------g~~~~~~~~~~~~~~G-~~vv~~~~~~~-~~~~~d~~~~~~~i~~~~pd~v~  196 (373)
T d1qo0a_         143 DYIY--------PRESNHVMRHLYRQHG-GTVLEEIYIPL-YPSDDDLQRAVERIYQARADVVF  196 (373)
T ss_dssp             SSHH--------HHHHHHHHHHHHHTTT-CEEEEEEEECS-SCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             Cccc--------cHHHHhhhhhhhhccc-CceeEEEEccC-ccccchhHHHHHHHHhhCCCcee
Confidence            8754        4456677788888775 23333222322 1245688888888875 555544

>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: YraM C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.57  E-value=1.3e-07  Score=70.31  Aligned_cols=107  Identities=9%  Similarity=0.002  Sum_probs=78.5

Q ss_pred             cceeeEEEECCCCchhHHHHHH-HHhccCCcEEccccCCCCCCCcccCCeeEEeeCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVAR-YSGVWGIPVLTAGGLVANFELKFEYPTLTRMMGSFSLVGQAVQSILKNFNWTVAGFM   89 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~-~~~~~~iP~is~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~ll~~f~W~~v~~i   89 (159)
                      ...++.+++||.|+..+..++. .+....+|+++.++....    ...+.++|+.++...++.++++.+..-+|++++++
T Consensus        53 ~~~~v~~iiGp~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~f~~~~~~~~~~~~la~~~~~~g~k~vail  128 (317)
T d3ckma1          53 KQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNS----RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVA  128 (317)
T ss_dssp             HHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTC----CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEE
T ss_pred             HHcCCeEEEEcccccchHHHHHHHHhccCceEEeccccccc----ccccceEEeccCCHHHHHHHHhhhhhcccceeEEe
Confidence            3467899999999977666444 556666777765543322    23467899999999999999999999999999999


Q ss_pred             EEeCCCcCCCCCCchHhHHHHHHHHHcCCCCCCcceeeeee
Q psy8570          90 FNNYGQTTGKGNSNCWFTIASVYKIITSPSGSNDMKLESFD  130 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~f~  130 (159)
                      +.++.+        +....+.+.+.+++.+ ..++....+.
T Consensus       129 ~~~~~~--------g~~~~~~~~~~~~~~G-~~v~~~~~~~  160 (317)
T d3ckma1         129 MPQNDL--------GQRVGNAFNVRWQQLA-GTDANIRYYN  160 (317)
T ss_dssp             EESSHH--------HHHHHHHHHHHHHHHH-SSCCEEEEES
T ss_pred             cccccc--------chhHHHHHHHHHHHcC-CEEEEEEecc
Confidence            998864        4556677777777764 3444444443

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.025  Score=38.73  Aligned_cols=34  Identities=15%  Similarity=0.020  Sum_probs=30.5

Q ss_pred             eeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570          13 VCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG   46 (159)
Q Consensus        13 ~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~   46 (159)
                      .++++|.||+.+.=......++..+++|++|.|.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGd   36 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA   36 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            3688999999999998999999999999999764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.87  E-value=0.12  Score=34.78  Aligned_cols=35  Identities=20%  Similarity=0.083  Sum_probs=30.9

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG   46 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~   46 (159)
                      +.++.+++||+.|.=+.....++..+++++|+.|.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gd   41 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGD   41 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhH
Confidence            45688999999999998899999999999998763

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.67  E-value=0.1  Score=35.04  Aligned_cols=35  Identities=23%  Similarity=0.052  Sum_probs=30.5

Q ss_pred             ceeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570          12 VVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG   46 (159)
Q Consensus        12 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~   46 (159)
                      +.++++++||+.|.=+.....++..+++++++.+.
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~   39 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGD   39 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhh
Confidence            45688999999999998899999999999998754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.49  E-value=0.11  Score=34.97  Aligned_cols=36  Identities=11%  Similarity=0.014  Sum_probs=31.3

Q ss_pred             cceeeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570          11 FVVCVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG   46 (159)
Q Consensus        11 ~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~   46 (159)
                      -+.+++.++||+.|.=......++..|++|+|+.|.
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~   41 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGD   41 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccH
Confidence            356788999999999888899999999999998754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.74  E-value=0.15  Score=34.76  Aligned_cols=33  Identities=18%  Similarity=0.152  Sum_probs=28.6

Q ss_pred             eeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570          14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG   46 (159)
Q Consensus        14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~   46 (159)
                      =++||-||+-+.=+.....++..+++|+++.|.
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGd   36 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   36 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            356788999999888888999999999999764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=85.07  E-value=0.32  Score=32.68  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=27.0

Q ss_pred             EEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570          16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAGG   46 (159)
Q Consensus        16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~~   46 (159)
                      ++++||+.|.=+.....++..+++++|+.|-
T Consensus         9 IiliG~PGSGKtT~a~~La~~~g~~~is~gd   39 (189)
T d2ak3a1           9 AAIMGAPGSGKGTVSSRITKHFELKHLSSGD   39 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHBCCEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeEEcHHH
Confidence            4688999999888888999999999998753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.62  E-value=0.35  Score=32.12  Aligned_cols=33  Identities=27%  Similarity=0.170  Sum_probs=28.8

Q ss_pred             eeEEEECCCCchhHHHHHHHHhccCCcEEcccc
Q psy8570          14 CVDAFLGPVCDYVIAPVARYSGVWGIPVLTAGG   46 (159)
Q Consensus        14 ~v~aiiGp~~s~~~~~va~~~~~~~iP~is~~~   46 (159)
                      .+++++||+.|.=+.....++..+++++|+.|.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~   34 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGE   34 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCceEcHHH
Confidence            467899999999888888999999999997654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=83.58  E-value=0.37  Score=31.77  Aligned_cols=30  Identities=17%  Similarity=0.213  Sum_probs=26.7

Q ss_pred             EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570          16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG   45 (159)
Q Consensus        16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~   45 (159)
                      ++++||+.|.=+.....++..+++|+++.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~~~is~g   32 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGTPHISTG   32 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceeeHH
Confidence            468899999988888899999999999865

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=82.66  E-value=0.41  Score=31.73  Aligned_cols=30  Identities=17%  Similarity=0.206  Sum_probs=26.4

Q ss_pred             EEEECCCCchhHHHHHHHHhccCCcEEccc
Q psy8570          16 DAFLGPVCDYVIAPVARYSGVWGIPVLTAG   45 (159)
Q Consensus        16 ~aiiGp~~s~~~~~va~~~~~~~iP~is~~   45 (159)
                      ++++||+.|.=+.....+|..+++++|+.|
T Consensus         6 iil~G~pGSGKsT~a~~La~~~g~~~i~~g   35 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNFCVCHLATG   35 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence            357899999988888899999999999876