Psyllid ID: psy8580

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MKSTRNKGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTSSTDGTDPPDVPPEPKTRRPTPFEQRMNLRNLLMTASYERRNRINDTATTSRPANKSFTPGSIIRAPTLPDIPPLPLPMSQPSAPPPRFTPPQHQHQQETPLLFCR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEccEEEEEEEccEEEEEEccccccEEcccEEEEccccEEEEEEEEEEcccccEEEEEEEcccccccccccccccEEEEcccccccccccccHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHccccccccccEEcccHcccEccEEHHHHccEEEEEEccccccccccEEEEEccccEEEEEEEEccccccccEEEEEEccHHHHHHcccccccEEEEEcccccccEEcHHHHHHHccccccccccccccHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkstrnkgeldlgdlppiedlqisvpedqclpvgkilNIVDTLVLIKtlkntptldldsvlfLDKGqrslgkifdvigpvsgpvycvrfnshqhivdsnikidqdvycapqtehtsyvplpdlikvkgsdaswerdqepppevvefsddeEERRVKRNQlrtrnnrntsstdgtdppdvppepktrrptpfEQRMNLRNLLMTASYERRNrindtattsrpanksftpgsiiraptlpdipplplpmsqpsappprftppqhqhqqetpllfcr
Flexible Loop (DISEMBL)
mkstrnkgeldlgdlppIEDLQISVPEDQCLPVGKILNIVDTLVLIKTlkntptldldsvLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTehtsyvplpdlIKVKGSDAswerdqepppevvefsddeeerrvkrnqlrtrnnrntsstdgtdppdvppepktrrptpfeqrmNLRNLLMTASYERRNRindtattsrpanksftpgsiirapTLPDIPPLPLPMSQPSAPPPRFTPPQHQHQQETPLLFCR
Low Complexity Region (SEG)
MKSTRNKGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLrtrnnrntsstDGTDPPDVPPEPKTRRPTPFEQRMNLRNLLMTASYERRNRINDTATTSRPANKSFTPGSIIRAptlpdipplplpmsqpsapppRFTppqhqhqqETPLLFCR
Disordered region (IsUnstruct)
*******************DLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKV****************************************************************************************************************************************************
Disordered Region (DISOPRED)
***TRNKGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSDASWERDQEPPPEVVEFSDDE****************************************************************************************************************************
Disordered Region (DISEMBL)
********ELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVKG***************************KRNQLRTRN*********************RRPTPFEQRMNLRNLLMTASYERRNRINDTATTSRPANKSFTPGSIIRAPTLPDIPPLPLPMSQP************************
Disordered Region (DISPRO)
********ELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSD*SWERDQEPPPEVVEFSDDEEERRVKRNQLR**********************************************************************IRAPTLPDIPPLPLPMSQPSAPPPRFTPP*******T***FC*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSTRNKGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTSSTDGTDPPDVPPEPKTRRPTPFEQRMNLRNLLMTASYERRNRINDTATTSRPANKSFTPGSIIRAPTLPDIPPLPLPMSQPSAPPPRFTPPQHQHQQETPLLFCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
357626297	431	hypothetical protein KGM_01213 [Danaus p	0.605	0.385	0.566	3e-49
195035523	554	GH11607 [Drosophila grimshawi] gi|193905	0.616	0.305	0.532	3e-49
194758787	574	GF15068 [Drosophila ananassae] gi|190615	0.616	0.294	0.532	4e-48
195437815	559	GK24689 [Drosophila willistoni] gi|19416	0.616	0.302	0.544	4e-48
195117806	650	GI17911 [Drosophila mojavensis] gi|19391	0.591	0.249	0.543	4e-48
328699916	562	PREDICTED: hypothetical protein LOC10057	0.678	0.330	0.505	2e-47
195387986	550	GJ17682 [Drosophila virilis] gi|19414913	0.594	0.296	0.527	1e-46
498942949	653	PREDICTED: H/ACA ribonucleoprotein compl	0.569	0.238	0.547	8e-46
312381831	892	hypothetical protein AND_05792 [Anophele	0.565	0.173	0.529	1e-45
195579950	567	GD24151 [Drosophila simulans] gi|1941918	0.616	0.298	0.562	2e-45

>gi|357626297|gb|EHJ76432.1| hypothetical protein KGM_01213 [Danaus plexippus]

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/166 (56%), Positives = 120/166 (72%)

Query: 8   GELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQ 67
           GEL L DLPPIEDL IS+P  + + +GKI +IVD LV+++  + TP +DLDSVLFLD G 
Sbjct: 142 GELGLDDLPPIEDLAISLPAQETIKIGKIASIVDRLVIVRAFEATPAVDLDSVLFLDNGA 201

Query: 68  RSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVK 127
           ++LGK+FDV GPV+ P YCVRFNS +H+ +  +    DVY AP++ HTSYV L +L+KVK
Sbjct: 202 KALGKVFDVFGPVTEPHYCVRFNSLEHVRERGVVTGADVYIAPRSAHTSYVFLAELMKVK 261

Query: 128 GSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTSSTDG 173
           GSDASW  D EPPP  V++SDDEEERR  R +   R N+   S DG
Sbjct: 262 GSDASWLNDIEPPPSHVDYSDDEEERRANRTRKEQRQNKQEDSGDG 307

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035523|ref|XP_001989227.1| GH11607 [Drosophila grimshawi] gi|193905227|gb|EDW04094.1| GH11607 [Drosophila grimshawi]

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 125/169 (73%)

Query: 7   KGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKG 66
           +GE+ L +LPPI+ L+I+VPED+C+ +GK+ +IVD LVL+  L N+   DLD+VLFL+KG
Sbjct: 239 RGEMTLDELPPIDQLEITVPEDECIELGKVQSIVDQLVLVSVLPNSMLFDLDTVLFLEKG 298

Query: 67  QRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKV 126
           ++ LG++FDV+G V+ P+YCVRFN++Q I D  I I   VYCAPQTEHT +V L  L++V
Sbjct: 299 RKVLGQVFDVLGQVADPLYCVRFNTNQQIKDRGINIGDIVYCAPQTEHTQFVILSKLMQV 358

Query: 127 KGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTSSTDGTD 175
           +GSDASWE D EPP   +++SDDEEER  +  Q + R    T+STD  +
Sbjct: 359 RGSDASWEHDVEPPARFIDYSDDEEEREARWEQRKKRQRERTNSTDSVE 407

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758787|ref|XP_001961640.1| GF15068 [Drosophila ananassae] gi|190615337|gb|EDV30861.1| GF15068 [Drosophila ananassae]

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 123/169 (72%)

Query: 7   KGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKG 66
           +GE+ L DLPPI  L+I+VPED+C+ +GK+ +IVD LVL+  + N+   DLD+VLFL+KG
Sbjct: 263 RGEMLLDDLPPIHQLEITVPEDECVELGKVHSIVDQLVLVSVIPNSLLFDLDTVLFLEKG 322

Query: 67  QRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKV 126
           ++ LG++FDV+G V+ P+YCVRFNS+Q I D  I I   VYCAP+TEHT +V L  L+K+
Sbjct: 323 RKVLGEVFDVLGQVADPLYCVRFNSNQQIKDKGINIGDVVYCAPKTEHTQFVILSKLMKI 382

Query: 127 KGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTSSTDGTD 175
           +GSDASWE D EPP   +++SDDE +R  K  Q + R    T+STD  D
Sbjct: 383 RGSDASWEHDVEPPERYIDYSDDEAQREAKHEQRKRRQRDRTNSTDSVD 431

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437815|ref|XP_002066835.1| GK24689 [Drosophila willistoni] gi|194162920|gb|EDW77821.1| GK24689 [Drosophila willistoni]

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/169 (54%), Positives = 128/169 (75%)

Query: 7   KGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKG 66
           +GE+ L DLPPI  L+I+VPED+C+ +GK+ +IVD LVL+  L N+   DLD+VLFL+KG
Sbjct: 241 RGEMLLDDLPPIHQLEITVPEDECVELGKVQSIVDQLVLVDVLPNSMLFDLDTVLFLEKG 300

Query: 67  QRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKV 126
           ++ LG++FDV+G V+ P+YCVRFNS+Q IVD +IK+   VYCAP+TEHT +V L  L++V
Sbjct: 301 RKVLGQVFDVLGQVADPIYCVRFNSNQQIVDRDIKVGDVVYCAPKTEHTQFVILSKLMQV 360

Query: 127 KGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTSSTDGTD 175
           +GSDASWE D EPP   +++SDDE ER  +++Q + R    T+STD  D
Sbjct: 361 RGSDASWEHDVEPPERYIDYSDDEAEREARQDQRKRRQRDRTNSTDSVD 409

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195117806|ref|XP_002003438.1| GI17911 [Drosophila mojavensis] gi|193914013|gb|EDW12880.1| GI17911 [Drosophila mojavensis]

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/162 (54%), Positives = 120/162 (74%)

Query: 8   GELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQ 67
           GE+ L DLPPIE L+I+VPED+C+ +GK+ +IVD LVL+  L N+   DLD+VLFL+KG+
Sbjct: 343 GEMLLDDLPPIEQLEITVPEDECIELGKVQSIVDQLVLVSVLPNSMLFDLDTVLFLEKGR 402

Query: 68  RSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVK 127
           + LG++FDV+G V+ P+YCVRFNS+Q I + NI +   VYCAPQTEHT +V L  L++V+
Sbjct: 403 KVLGQVFDVLGQVADPLYCVRFNSNQQIKERNINVGDIVYCAPQTEHTQFVILSKLMQVR 462

Query: 128 GSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTS 169
           GSDASWE D EPP   +++SDDE ER  +  Q + R    T+
Sbjct: 463 GSDASWEHDVEPPARFIDYSDDEAEREARWEQRKKRQRERTN 504

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699916|ref|XP_003241090.1| PREDICTED: hypothetical protein LOC100571954 [Acyrthosiphon pisum]

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 129/190 (67%), Gaps = 4/190 (2%)

Query: 5   RNKGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLD 64
           + KGELD+ DLPPIEDL+ISV E +C PVG I ++VDTLV+++   N P LD+DSVLF+D
Sbjct: 225 KTKGELDISDLPPIEDLKISVDEAKCQPVGCIKSVVDTLVIVEAFLNQPALDIDSVLFVD 284

Query: 65  KGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLI 124
           +G+R+LG+IFDV GPV  P Y VRFN   HI   +I+I + VYCAPQTE+ SYV +  L+
Sbjct: 285 RGKRALGRIFDVFGPVIKPFYAVRFNDSNHIKKFDIQIKEPVYCAPQTEYASYVMVSQLM 344

Query: 125 KVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTSSTDGTDPPDVPPEPK 184
           K+KGSDASW  + EPP E +++SDDE E+  K+ + + +  + +   D  D    P  P 
Sbjct: 345 KMKGSDASWRDNNEPPCEFLDYSDDEAEKLAKKKRRQKKCTQLSEDDDTVDKEKSPDPPS 404

Query: 185 TR----RPTP 190
            R     PTP
Sbjct: 405 QRVFRNNPTP 414

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195387986|ref|XP_002052673.1| GJ17682 [Drosophila virilis] gi|194149130|gb|EDW64828.1| GJ17682 [Drosophila virilis]

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 120/163 (73%)

Query: 7   KGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKG 66
           +GE+ L +LPPI  L+I+VPED+C+ +GK+ +IVD LVL+  L N+   DLD+VLFL+KG
Sbjct: 250 RGEMLLDELPPIHQLEITVPEDECIELGKVHSIVDQLVLVSVLPNSMLFDLDTVLFLEKG 309

Query: 67  QRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKV 126
           ++ LG++FDV+G V+ P+YCVRFN++Q I + NI I   VYCAPQTEHT +V L  L++V
Sbjct: 310 RKVLGQVFDVLGQVADPLYCVRFNTNQQIKERNINIGDIVYCAPQTEHTQFVILSKLMQV 369

Query: 127 KGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTS 169
           +GSDASWE D EPP   +++SDDE ER  +  Q + R    T+
Sbjct: 370 RGSDASWEHDVEPPARFIDYSDDEAEREARWEQRKKRQRERTN 412

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|498942949|ref|XP_004521799.1| PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Ceratitis capitata]

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 120/157 (76%), Gaps = 1/157 (0%)

Query: 5   RNKGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLD 64
           R +GE+ L +LPPI+DLQISVP ++C+  G++ +IVD L+L+  L N   LDLD+VLFL+
Sbjct: 294 RVRGEMLLDELPPIQDLQISVPAEECIEFGRVHSIVDQLLLVSALPNAILLDLDTVLFLE 353

Query: 65  KGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLI 124
           +G+R LG++FDV+G V+ P+YCVRFN++QHI +  I +   VY AP+TE+T YV L  L+
Sbjct: 354 QGKRVLGEVFDVLGQVADPIYCVRFNTNQHIQEKGINVGDIVYVAPKTEYTQYVILSSLM 413

Query: 125 KVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLR 161
           K++GSDASWE D EPPP  +++SDDEEER   R +LR
Sbjct: 414 KMRGSDASWENDIEPPPRYLDYSDDEEEREA-RQKLR 449

Source: Ceratitis capitata

Species: Ceratitis capitata

Genus: Ceratitis

Family: Tephritidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381831|gb|EFR27481.1| hypothetical protein AND_05792 [Anopheles darlingi]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/155 (52%), Positives = 121/155 (78%)

Query: 5   RNKGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLD 64
           R KGE+ L ++PPIE+L I+VPE++C P+G+I +IV  +VL+++      L+L++VLFLD
Sbjct: 226 RTKGEILLHEMPPIEELTITVPEEECQPIGRIDSIVAQIVLVQSEPGVELLNLETVLFLD 285

Query: 65  KGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLI 124
           +G+R+LGKIFDVIG V+ P+YCV FNS+Q ++  NI +  +V+CAP+TEHTS++ L +L+
Sbjct: 286 RGKRTLGKIFDVIGQVNRPIYCVLFNSNQEVLAKNITVGMEVFCAPRTEHTSFIILSELM 345

Query: 125 KVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQ 159
           ++KGSDASW  D EPPP +VE+SDDE ER  ++  
Sbjct: 346 RMKGSDASWMNDNEPPPHMVEYSDDESERYARKGH 380

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195579950|ref|XP_002079819.1| GD24151 [Drosophila simulans] gi|194191828|gb|EDX05404.1| GD24151 [Drosophila simulans]

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 125/169 (73%)

Query: 7   KGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKG 66
           +GE+ L DLPPI  L+I+VPED+C+ +GK+ +IVD LVL+  L N+   DLD+VLFL+KG
Sbjct: 265 RGEMLLDDLPPIHQLEITVPEDECVELGKVQSIVDQLVLVSVLPNSMLFDLDTVLFLEKG 324

Query: 67  QRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKV 126
           ++ LG++FDV+G VS P+YCVRFNS+Q I+D  IKI   VYCAP+TEHT +V L  L++V
Sbjct: 325 RKVLGEVFDVLGQVSDPLYCVRFNSNQQILDRGIKIGDVVYCAPKTEHTQFVILSKLMQV 384

Query: 127 KGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTSSTDGTD 175
           +GSDASWE D EPP   V+ SDDEEER  +  Q + R    T+STD  D
Sbjct: 385 RGSDASWEHDVEPPARYVDHSDDEEEREARAEQRKRRQRDRTNSTDSVD 433

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
FB|FBgn0032701	564	CG10341 [Drosophila melanogast	0.817	0.397	0.441	4.8e-46
ZFIN|ZDB-GENE-030131-4546	503	naf1 "nuclear assembly factor	0.700	0.381	0.426	5.7e-36
MGI|MGI:2682306	489	Naf1 "nuclear assembly factor	0.562	0.314	0.445	5.7e-36
RGD|1306802	457	Naf1 "nuclear assembly factor	0.562	0.336	0.439	3.1e-35
UNIPROTKB|Q52KK4	457	Naf1 "H/ACA ribonucleoprotein	0.562	0.336	0.439	3.1e-35
UNIPROTKB|F1LMR4	389	Naf1 "H/ACA ribonucleoprotein	0.562	0.395	0.439	6.7e-33
UNIPROTKB|F1NV75	398	NAF1 "Uncharacterized protein"	0.562	0.386	0.433	3.7e-32
UNIPROTKB|F1NWY4	427	NAF1 "Uncharacterized protein"	0.562	0.360	0.433	3.7e-32
UNIPROTKB|Q96HR8	494	NAF1 "H/ACA ribonucleoprotein	0.562	0.311	0.433	9.8e-32
UNIPROTKB|Q1RMQ2	360	LOC514182 "Uncharacterized pro	0.562	0.427	0.426	1.6e-31

FB|FBgn0032701 CG10341 [Drosophila melanogaster (taxid:7227)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 102/231 (44%), Positives = 137/231 (59%)

Query:     7 KGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKG 66
             +GE+ L DLPPI  L+I+VPED+C+ +GK+ +IVD LVL+  L N+   DLD+VLFL+KG
Sbjct:   263 RGEMLLDDLPPIHQLEITVPEDECVELGKVQSIVDQLVLVSVLPNSMLFDLDTVLFLEKG 322

Query:    67 QRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKV 126
             ++ LG++FDV+G VS P+YCVRFNS++ I+D  IKI   VYCAP+TEHT +V L  L++V
Sbjct:   323 RKVLGEVFDVLGQVSDPLYCVRFNSNKQILDRGIKIGDVVYCAPKTEHTQFVILSKLMQV 382

Query:   127 KGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLXXXXXXXXXXXDGTDPPDVPPEPKTR 186
             +GSDASWE D EPP   V+ SDDEEER  +  Q            D  D         T+
Sbjct:   383 RGSDASWEHDVEPPARYVDHSDDEEEREARAEQRKRRQRDRTNSTDSVDTVTSVATTATK 442

Query:   187 R----PTPFEQ-RMNLRNLLMTASYERRNRINDTATTSRPAN--KSFTPGS 230
                  P P ++ R   R     +     N+ N         N   S+ PGS
Sbjct:   443 ASSVAPPPRQRGRRGQRESFRQSQRPSINQHNQNQPQDEQYNFHPSYNPGS 493

GO:0030515 "snoRNA binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-030131-4546 naf1 "nuclear assembly factor 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 84/197 (42%), Positives = 120/197 (60%)

Query:     5 RNKGELDLGDLPPIEDLQISVPED-QCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
             + + EL + DLP +E+L IS+PED +  P+G I +IVD LV++++ KN P L+ +SVLF 
Sbjct:   230 KTQDELLIDDLPAVENLIISLPEDTEMEPIGTISSIVDQLVIVESYKNLPPLNEESVLF- 288

Query:    64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQT-EHTSYVPLPD 122
              K + S+GK+F++ GPV  P Y +RFNSH  I   ++K+   VY AP+  + T Y+    
Sbjct:   289 SKNRNSVGKVFEIFGPVCQPFYVLRFNSHDDIEQKDLKVRDPVYFAPKLKDFTDYIFTDK 348

Query:   123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLXXXXXXXXXXXDGTDPPDVPPE 182
             L  +KGSDASW+ DQEPPPE ++FSDDE+ER  K+ +L           D  D  D    
Sbjct:   349 LKTLKGSDASWKNDQEPPPEALDFSDDEQERLAKQ-KLKEQKRRQQNDSDSEDESDAQKM 407

Query:   183 P-KTRRPTPFEQRMNLR 198
             P K  R  P + R + R
Sbjct:   408 PQKAARRKPRQNRNHPR 424

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

MGI|MGI:2682306 Naf1 "nuclear assembly factor 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 359 (131.4 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 70/157 (44%), Positives = 107/157 (68%)

Query:     5 RNKGELDLGDLPPIEDLQISVPEDQCL-PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
             + K EL L +LP +E+L + +PED  L P+GK+ +I++ LV+I+++ N P ++ D+V+F 
Sbjct:   165 KTKDELLLNELPSVEELTVILPEDIALKPLGKVSSIIEQLVIIESVTNIPPVNEDTVIFK 224

Query:    64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQT-EHTSYVPLPD 122
                Q + GKIF++ GPV+ P Y +RFNS  HI    IKI+  +Y AP   + T Y+    
Sbjct:   225 SDRQAA-GKIFEIFGPVAHPFYVLRFNSSDHIESKGIKINDTMYFAPSMKDFTQYIFTEK 283

Query:   123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQ 159
             L + +GSDASW+ DQEPPPEV++FSDDE+E+  K+ +
Sbjct:   284 LKQDRGSDASWKNDQEPPPEVLDFSDDEKEKEAKQRK 320

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=ISO

RGD|1306802 Naf1 "nuclear assembly factor 1 ribonucleoprotein" [Rattus norvegicus (taxid:10116)]

 Score = 359 (131.4 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 69/157 (43%), Positives = 107/157 (68%)

Query:     5 RNKGELDLGDLPPIEDLQISVPEDQCL-PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
             + K EL L +LP +E+L +++PED  L P+GK+ +I++ LV+I+++ N P ++ D+V+F 
Sbjct:   137 KTKDELLLNELPSVEELTVTLPEDIALKPLGKVSSIIEQLVIIESMTNIPPVNEDTVIFK 196

Query:    64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQT-EHTSYVPLPD 122
                Q + GKIF++ GPV+ P Y +RFNS +HI    IKI   +Y AP   + T Y+    
Sbjct:   197 SDRQAA-GKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMKDFTQYIFTEK 255

Query:   123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQ 159
             L + +GSDASW+ DQEPPPE ++FSDDE+E+  K+ +
Sbjct:   256 LKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRK 292

GO:0003723 "RNA binding" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0030054 "cell junction" evidence=IEA;ISO

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA;ISO;ISS

UNIPROTKB|Q52KK4 Naf1 "H/ACA ribonucleoprotein complex non-core subunit NAF1" [Rattus norvegicus (taxid:10116)]

 Score = 359 (131.4 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 69/157 (43%), Positives = 107/157 (68%)

Query:     5 RNKGELDLGDLPPIEDLQISVPEDQCL-PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
             + K EL L +LP +E+L +++PED  L P+GK+ +I++ LV+I+++ N P ++ D+V+F 
Sbjct:   137 KTKDELLLNELPSVEELTVTLPEDIALKPLGKVSSIIEQLVIIESMTNIPPVNEDTVIFK 196

Query:    64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQT-EHTSYVPLPD 122
                Q + GKIF++ GPV+ P Y +RFNS +HI    IKI   +Y AP   + T Y+    
Sbjct:   197 SDRQAA-GKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMKDFTQYIFTEK 255

Query:   123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQ 159
             L + +GSDASW+ DQEPPPE ++FSDDE+E+  K+ +
Sbjct:   256 LKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRK 292

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

UNIPROTKB|F1LMR4 Naf1 "H/ACA ribonucleoprotein complex non-core subunit NAF1" [Rattus norvegicus (taxid:10116)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 69/157 (43%), Positives = 107/157 (68%)

Query:     5 RNKGELDLGDLPPIEDLQISVPEDQCL-PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
             + K EL L +LP +E+L +++PED  L P+GK+ +I++ LV+I+++ N P ++ D+V+F 
Sbjct:   137 KTKDELLLNELPSVEELTVTLPEDIALKPLGKVSSIIEQLVIIESMTNIPPVNEDTVIFK 196

Query:    64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQT-EHTSYVPLPD 122
                Q + GKIF++ GPV+ P Y +RFNS +HI    IKI   +Y AP   + T Y+    
Sbjct:   197 SDRQAA-GKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMKDFTQYIFTEK 255

Query:   123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQ 159
             L + +GSDASW+ DQEPPPE ++FSDDE+E+  K+ +
Sbjct:   256 LKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRK 292

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1NV75 NAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 68/157 (43%), Positives = 105/157 (66%)

Query:     5 RNKGELDLGDLPPIEDLQISVPEDQCLPV-GKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
             R K EL L +LPP+EDL + +P++  L + G + +I++ LV+I++L+  P ++ +S++F 
Sbjct:    83 RTKDELPLDELPPVEDLTVILPDNVELKLFGTVSSIIEQLVIIESLRGLPPINEESIIFK 142

Query:    64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEH-TSYVPLPD 122
             +  Q + GK+F+V GPV  P Y +RFNS +HI    I +  ++Y AP  E  T Y+    
Sbjct:   143 EDRQAA-GKVFEVFGPVQHPFYVLRFNSAEHIKAKGINVQDNMYFAPSVEDFTQYIFAEK 201

Query:   123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQ 159
             L + KGSDASW+ DQEPPPE ++FSDDE+ER  K+ +
Sbjct:   202 LQQEKGSDASWKNDQEPPPEALDFSDDEKEREAKQKK 238

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1NWY4 NAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 68/157 (43%), Positives = 105/157 (66%)

Query:     5 RNKGELDLGDLPPIEDLQISVPEDQCLPV-GKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
             R K EL L +LPP+EDL + +P++  L + G + +I++ LV+I++L+  P ++ +S++F 
Sbjct:   115 RTKDELPLDELPPVEDLTVILPDNVELKLFGTVSSIIEQLVIIESLRGLPPINEESIIFK 174

Query:    64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEH-TSYVPLPD 122
             +  Q + GK+F+V GPV  P Y +RFNS +HI    I +  ++Y AP  E  T Y+    
Sbjct:   175 EDRQAA-GKVFEVFGPVQHPFYVLRFNSAEHIKAKGINVQDNMYFAPSVEDFTQYIFAEK 233

Query:   123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQ 159
             L + KGSDASW+ DQEPPPE ++FSDDE+ER  K+ +
Sbjct:   234 LQQEKGSDASWKNDQEPPPEALDFSDDEKEREAKQKK 270

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q96HR8 NAF1 "H/ACA ribonucleoprotein complex non-core subunit NAF1" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 68/157 (43%), Positives = 105/157 (66%)

Query:     5 RNKGELDLGDLPPIEDLQISVPED-QCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
             + K EL L +LP +E+L I +PED +  P+G + +I++ LV+I+++ N P ++ ++V+F 
Sbjct:   172 KTKDELLLNELPSVEELTIILPEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFK 231

Query:    64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQT-EHTSYVPLPD 122
                Q + GKIF++ GPV+ P Y +RFNS  HI    IKI + +Y AP   + T Y+    
Sbjct:   232 SDRQAA-GKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFAPSMKDFTQYIFTEK 290

Query:   123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQ 159
             L + KGSDASW+ DQEPPPE ++FSDDE+E+  K+ +
Sbjct:   291 LKQDKGSDASWKNDQEPPPEALDFSDDEKEKEAKQRK 327

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0042254 "ribosome biogenesis" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|Q1RMQ2 LOC514182 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 67/157 (42%), Positives = 106/157 (67%)

Query:     5 RNKGELDLGDLPPIEDLQISVPED-QCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
             + K EL L +LP +E+L I +PED +  P+G + +I++ LV+I+++ N P ++ ++V+F 
Sbjct:   135 KTKDELLLSELPSVEELTIVLPEDIELKPLGMVSSIIEQLVIIESMTNVPPVNEETVIFK 194

Query:    64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQT-EHTSYVPLPD 122
                Q + GKIF++ GPV+ P Y +RFNS +HI +  IKI   +Y AP   + T Y+    
Sbjct:   195 TDRQAA-GKIFEIFGPVAHPFYVLRFNSSEHIENKGIKIKDTMYFAPSMKDFTQYIFTEK 253

Query:   123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQ 159
             L + +GSDASW+ DQEPPPE ++FSDDE+E+  K+ +
Sbjct:   254 LKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRK 290

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	274
pfam04410	154	pfam04410, Gar1, Gar1/Naf1 RNA binding region	9e-35
PRK13149	73	PRK13149, PRK13149, H/ACA RNA-protein complex comp	0.004

>gnl|CDD|190975 pfam04410, Gar1, Gar1/Naf1 RNA binding region

 Score =  122 bits (308), Expect = 9e-35
 Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 8/155 (5%)

Query: 8   GELDLGDLPPIEDLQISV-PEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKG 66
            E    + PP      ++ P  +   +G I ++V+  V+IK+  +   LD  S+L L+  
Sbjct: 1   NEGGGEEGPPGGPPDYTIGPPTEIEELGTISSVVENQVVIKSTNSEKVLDFGSILCLEDK 60

Query: 67  QRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIK- 125
              +GK+ ++ GPV+ P Y V+F S + I   ++K+   VY  P         L   +K 
Sbjct: 61  T-VIGKVDEIFGPVNNPFYSVKF-SSEGIQAKSLKVGDKVYYVPD--PAQRF-LTQPLKQ 115

Query: 126 VKGSDASWERDQEPPPEV-VEFSDDEEERRVKRNQ 159
            KG+DAS   D+E P E   EFSDDE E   KR +
Sbjct: 116 QKGTDASNGHDEELPEEERGEFSDDEAEAEAKRGR 150

Gar1 is a small nucleolar RNP that is required for pre-mRNA processing and pseudouridylation. It is co-immunoprecipitated with the H/ACA families of snoRNAs. This family represents the conserved central region of Gar1. This region is necessary and sufficient for normal cell growth, and specifically binds two snoRNAs snR10 and snR30. This region is also necessary for nucleolar targeting, and it is thought that the protein is co-transported to the nucleolus as part of a nucleoprotein complex. In humans, Gar1 is also component of telomerase in vivo. Naf1 is an essentail protein that plays a role in ribosome biogenesis, modification of spliceosomal small nuclear RNAs and telomere synthesis, and is homologous to Gar1. Length = 154

>gnl|CDD|183872 PRK13149, PRK13149, H/ACA RNA-protein complex component Gar1; Reviewed

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 33 VGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGP 83
          +GK+L+      LI  L   P   + SV++  K ++ +GK+ DV GPV  P
Sbjct: 4  LGKVLHYAPKGKLIIRLDKQP--PIGSVVYDKKLKK-IGKVVDVFGPVKEP 51

Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
KOG2236|consensus	483		100.0
PF04410	154	Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR0	100.0
PRK13149	73	H/ACA RNA-protein complex component Gar1; Reviewed	99.71
KOG3262|consensus	215		99.57
COG3277	98	GAR1 RNA-binding protein involved in rRNA processi	99.49

>KOG2236|consensus

Probab=100.00  E-value=9.2e-53  Score=407.17  Aligned_cols=241  Identities=35%  Similarity=0.556  Sum_probs=185.5

Q ss_pred             CCCcccCCCCCCCCCCCCCccccCCCC-ceeeceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCC
Q psy8580           2 KSTRNKGELDLGDLPPIEDLQISVPED-QCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPV   80 (274)
Q Consensus         2 ~~~rTknEl~~e~LPpi~~l~i~lPe~-~I~~LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV   80 (274)
                      ++++|+||+++++|||++.++|+|+++ +|++||.|++|+++.|||++..+..||++|||||++ ||++||.|+||||||
T Consensus       179 ~p~ktr~e~ll~elPpv~~~~i~l~e~~~~~plG~V~svv~~~VII~s~~~~~vlde~Svlf~e-dR~~lG~I~EiFGpV  257 (483)
T KOG2236|consen  179 KPQKTRNEHLLDELPPVEPEEITLEEKGELLPLGKVSSVVDQQVIIESTCNKEVLDEDSVLFLE-DRTALGQIFEIFGPV  257 (483)
T ss_pred             cCCCCCCchhhhcCCCCCccceeecCCcceechhHHHHHhhhceEEEeccCcccccccceEEee-ccccchhhhhhhccc
Confidence            478999999999999999999999888 899999999999999999999999999999999999 599999999999999


Q ss_pred             CCcEEEEEeCCCcccccccccCCCeeeecCCCCceeeccCcccccccccccCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q psy8580          81 SGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQL  160 (274)
Q Consensus        81 ~~PyYsVRfns~e~I~~~~l~vG~kVYyvP~~~~t~~V~t~~l~~~KGsDASn~~DEE~pe~e~EFSDDE~E~e~Kr~~K  160 (274)
                      ++|||+||||+.++|...++.+|++|||+|  +||+|||+..|++.|||||||.||||++++++||||||||++||+++|
T Consensus       258 ~~P~YvvRFnS~~e~~~~gi~ig~~vy~ap--~~tq~I~~~klkq~kGsDASn~~DeE~p~~e~dfSDDEkEaeak~~kK  335 (483)
T KOG2236|consen  258 KNPYYVVRFNSEEEISFLGICIGEKVYYAP--DFTQEIFTEKLKQGKGSDASNRYDEEIPPREQDFSDDEKEAEAKQMKK  335 (483)
T ss_pred             CCceEEEecCchhhhhhhccccCCeeEecC--cchhhhcchhhhhcccccccccccccCChhhhccchHHHHHHHHHHHH
Confidence            999999999999999888999999999998  689999999999999999999999999999999999999999999988


Q ss_pred             HhhcCCCCCCC--CCCCCCCCC--CC----CCCCCCCCccccCCcccccchhhHHHhhhcccccccCCCCCCCCCCCccc
Q psy8580         161 RTRNNRNTSST--DGTDPPDVP--PE----PKTRRPTPFEQRMNLRNLLMTASYERRNRINDTATTSRPANKSFTPGSII  232 (274)
Q Consensus       161 ~kkk~k~~~~~--d~~~~~~~~--~~----~~~~r~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      +++++++....  |.+....+-  +.    .-+.-+-.|+.|--+|++      + |.|.|-+-+.--++--+|.|+++-
T Consensus       336 Qrk~r~~~k~~~nd~~~~~~~~~~ean~~Ssn~p~~~~y~~r~~~~gf------~-rp~s~~~q~pP~~~q~~~~p~~~~  408 (483)
T KOG2236|consen  336 QRKRRSKVKFSDNDPVKVKTEVEGEANRTSSNQPAPQMYRGRDQNRGF------K-RPRSNHGQKPPQSAQNSFHPSSSD  408 (483)
T ss_pred             HhhcccccccccCCCCccccccccccccccccCCcccccCCcccccCC------C-CcccccCCCCCcccccccCccccC
Confidence            64433332222  222111111  00    011111222222222322      1 344455555555566677777653


Q ss_pred             ---cCCCCCCCCCC--CCCCCCCCC
Q psy8580         233 ---RAPTLPDIPPL--PLPMSQPSA  252 (274)
Q Consensus       233 ---~~~~~~~~~~~--~~~~~~~~~  252 (274)
                         -+|+-+|.||-  ..||+||..
T Consensus       409 ~s~p~pq~qNyppp~p~f~m~~~hP  433 (483)
T KOG2236|consen  409 NSGPSPQQQNYPPPSPSFPMFQPHP  433 (483)
T ss_pred             CCCCCcccCCCCCCCCCCCccCCCC
Confidence               45677776542  345664433

>PF04410 Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR007504 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs

Probab=100.00  E-value=2.5e-43  Score=300.26  Aligned_cols=149  Identities=38%  Similarity=0.642  Sum_probs=83.8

Q ss_pred             CCCCCCCCCccccC-CCCceeeceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeC
Q psy8580          12 LGDLPPIEDLQISV-PEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFN   90 (274)
Q Consensus        12 ~e~LPpi~~l~i~l-Pe~~I~~LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfn   90 (274)
                      .+++++.+...+++ |+..|++||+|+|+|++.|||++..+..||++||+||++ ||+.||+|+||||||++|||+|||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~i~~lG~v~~i~~~~vVvk~~~~~~vl~~~s~v~~e-dr~~iG~V~eiFGpV~~P~y~Vr~~   82 (154)
T PF04410_consen    4 GDGLPPVEPPDVEIGPPEEIKPLGTVSHIVENLVVVKSTPSKQVLDFGSVVCLE-DRTKIGKVDEIFGPVNNPYYSVRFN   82 (154)
T ss_dssp             ----SS---TT-B--TTSSEEEEEEEEEEETTEEEEEE-SS-CEEBTT-EEEET-TSBEEEEEEEEESESSS-EEEEE-S
T ss_pred             cccCCCCCCCCcccCCCceEEEeeeEEEEeCCcEEEEeCCCCcCCCCCCEEECC-CCCEeEEEeeEeCCCCceEEEEEeC
Confidence            57788886555565 667999999999999999999999888999999999999 6999999999999999999999999


Q ss_pred             CCcccccccccCCCeeeecCCCCceeeccCcccccccccccCCCCCCCCCCCCC-CCCChHHHHHHHHHHHHhh
Q psy8580          91 SHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSDASWERDQEPPPEVV-EFSDDEEERRVKRNQLRTR  163 (274)
Q Consensus        91 s~e~I~~~~l~vG~kVYyvP~~~~t~~V~t~~l~~~KGsDASn~~DEE~pe~e~-EFSDDE~E~e~Kr~~K~kk  163 (274)
                      ..+++.+.++++|++|||++.  |++||++.++...||+||||.+|||++++++ ||||||+|++||+++|++|
T Consensus        83 ~~~~~~~~~~~~g~~vy~~~~--~~~~~~~~~~~~~kg~das~~~d~e~~~~~~~efsdde~e~~~k~~~k~~~  154 (154)
T PF04410_consen   83 SSEGIKAKSLKVGDKVYYDPD--PTSRFLPEPLKRKKGSDASNKHDEEGPEGERGEFSDDEEEREYKRGRKNKK  154 (154)
T ss_dssp             CHHHHHHHCCCTTSEEEEECC---GGGG----------------------------------------------
T ss_pred             CccccccccccccceEEECCC--chheeccccccccCCCCcccCCCCCCCCCCCCCcCCCccccccccCCCCCC
Confidence            989998889999999999985  8999999999999999999999999998887 9999999999999998875

More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. This entry represents Gar1 and Naf1. Naf1 is an RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex, disappearing during maturation of the complex being replaced by GAR1 to yield mature H/ACA snoRNPs complex. Naf1 reveals a striking structural homology with the core domain of archaeal Gar1 [].; GO: 0030515 snoRNA binding, 0031120 snRNA pseudouridine synthesis, 0042254 ribosome biogenesis; PDB: 2EY4_C 3MQK_C 2RFK_C 2HVY_B 3HAY_B 3U28_C 3UAI_C 2EQN_A 2V3M_F.

>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed

Probab=99.71  E-value=3.8e-17  Score=124.82  Aligned_cols=71  Identities=24%  Similarity=0.454  Sum_probs=63.4

Q ss_pred             eeeceeEEeee-cCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCCCeeee
Q psy8580          30 CLPVGKILNIV-DTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYC  108 (274)
Q Consensus        30 I~~LGtV~sIV-e~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG~kVYy  108 (274)
                      |+++|+|+|+| ++.+|+++   ..++.+|+.||+++ ++.||+|+||||||++||++|++.+....  .  .+|++||+
T Consensus         1 Mk~~G~~~h~~~~g~lI~~~---~~~P~~n~~V~~~~-~~~IGkV~dIfGPV~~pY~~Vk~~~~~~~--~--~~g~k~yi   72 (73)
T PRK13149          1 MKRLGKVLHYAPKGKLIIRL---DKQPPIGSVVYDKK-LKKIGKVVDVFGPVKEPYVLVKPDKKDPP--E--LVGEKLYV   72 (73)
T ss_pred             CcEeEEEEEEcCCCCEEEEc---CCCCCCCCEeECCC-CCEeEEEEEEECCCCCcEEEEEeCCCCCc--c--ccCCEEEe
Confidence            67899999999 78999998   46999999999985 99999999999999999999999855443  2  79999997

>KOG3262|consensus

Probab=99.57  E-value=1.2e-15  Score=135.47  Aligned_cols=84  Identities=15%  Similarity=0.429  Sum_probs=77.7

Q ss_pred             cCCCCceeeceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCC
Q psy8580          24 SVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKID  103 (274)
Q Consensus        24 ~lPe~~I~~LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG  103 (274)
                      +.|++++++||+++|.|++.+||+.+. ..++++|+.||||| ++.||+|+|||||+++-+++|++.  +.|.+.++++|
T Consensus        47 ~gpp~evvelg~flh~Cegd~Vck~~~-~kIPyfNAPIylen-k~qIGKVDEIfG~i~d~~fsIK~~--dgv~assfk~g  122 (215)
T KOG3262|consen   47 QGPPEEVVELGKFLHMCEGDLVCKLTN-KKIPYFNAPIYLEN-KEQIGKVDEIFGPINDVHFSIKPS--DGVQASSFKPG  122 (215)
T ss_pred             CCCchhhhhhhhhhhhcCCceEEeecc-ccCCCCCCceeecc-hhhhcchhhhcccccccEEEEecC--CCceeecccCC
Confidence            568889999999999999999999765 57999999999996 999999999999999999999988  77778899999


Q ss_pred             CeeeecCC
Q psy8580         104 QDVYCAPQ  111 (274)
Q Consensus       104 ~kVYyvP~  111 (274)
                      +++|++|.
T Consensus       123 ~k~fi~p~  130 (215)
T KOG3262|consen  123 DKLFIDPD  130 (215)
T ss_pred             CeEEeccc
Confidence            99999985

>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=1.4e-13  Score=111.08  Aligned_cols=78  Identities=22%  Similarity=0.396  Sum_probs=66.2

Q ss_pred             eeeceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCCCeeeec
Q psy8580          30 CLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCA  109 (274)
Q Consensus        30 I~~LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG~kVYyv  109 (274)
                      |.+||.|+|+|+..+||.... ..++.+|+.|+++ +.+.||+|.||||||++||.+|+..+...  .....+|+.+|+.
T Consensus         1 m~~lG~vlh~~~~g~vi~~~~-~~iP~l~~~V~~~-~~k~IG~V~dVfGPv~~PY~~Vkp~~~~~--~~~~~vg~~lYi~   76 (98)
T COG3277           1 MKRLGKVLHVCGTGMVIVRDN-DRIPPLNAPVYDA-NLKRIGKVVDVFGPVDEPYILVKPDDRDV--KLESLVGDTLYIP   76 (98)
T ss_pred             CccceeEEEecCCceEEEeCC-CCCCCCCCeeEec-CCCEEEEEEEEEccCCCCEEEEecccccc--ccccccceEEEec
Confidence            468999999999776666543 5799999999998 58999999999999999999999864433  4567899999999


Q ss_pred             CC
Q psy8580         110 PQ  111 (274)
Q Consensus       110 P~  111 (274)
                      ++
T Consensus        77 ~~   78 (98)
T COG3277          77 PD   78 (98)
T ss_pred             cc
Confidence            75

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
2eqn_A	103	Solution Structure Of The Naf1 Domain Of Hypothetic		3e-16

>pdb|2EQN|A Chain A, Solution Structure Of The Naf1 Domain Of Hypothetical Protein Bc008207 [homo Sapiens] Length = 103

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 67/98 (68%), Gaps = 2/98 (2%)
Query: 13  GDLPPIEDLQISVPEDQCL-PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLG 71
           G+LP +E+L I +PED  L P+G + +I++ LV+I+++ N P ++ ++V+F    +++ G
Sbjct: 7   GELPSVEELTIILPEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIF-KSDRQAAG 65
Query: 72  KIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCA 109
           KIF++ GPV+ P Y +RFNS  HI    IKI + +Y A
Sbjct: 66  KIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFA 103
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
2eqn_A	103	Hypothetical protein LOC92345; NAF1 domain, hypoth	7e-30
2v3m_A	131	NAF1; ribosomal protein, GAR1, snoRNP, phosphoryla	8e-25
2ey4_C	82	Small nucleolar RNP similar to GAR1; trimeric comp	5e-06
2hvy_B	104	GAR1, small nucleolar RNP similar to GAR1; H/ACA R	5e-04

>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score =  107 bits (268), Expect = 7e-30
 Identities = 39/98 (39%), Positives = 67/98 (68%), Gaps = 2/98 (2%)

Query: 13  GDLPPIEDLQISVPED-QCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLG 71
           G+LP +E+L I +PED +  P+G + +I++ LV+I+++ N P ++ ++V+F    +++ G
Sbjct: 7   GELPSVEELTIILPEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKS-DRQAAG 65

Query: 72  KIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCA 109
           KIF++ GPV+ P Y +RFNS  HI    IKI + +Y A
Sbjct: 66  KIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFA 103

>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae} Length = 131

 Score = 95.4 bits (237), Expect = 8e-25
 Identities = 16/127 (12%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 5   RNKGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNT--PTLDLDSVLF 62
            +K E+    +P + +      +    P+G + +  +  ++I    +     L   S+  
Sbjct: 5   LSKNEILEETVPELPEDYEISEKTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFC 64

Query: 63  LDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQ--HIVDSNIKIDQDVYCAPQTEHTSYVPL 120
           L+     +G + +V GP+  P Y ++    +     +  +++ +  +         ++  
Sbjct: 65  LEDR-TLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRLGEKAFIVT--PDAHWIDT 121

Query: 121 PDLIKVK 127
            +L    
Sbjct: 122 FELKHHH 128

>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C Length = 82

 Score = 42.6 bits (100), Expect = 5e-06
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 33  VGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSH 92
           +GK+L+      LI      P   L+  +  DK  + +G + DV GPV  P   ++    
Sbjct: 11  LGKVLHYAKQGFLIVRTNWVP--SLNDRVV-DKRLQFVGIVKDVFGPVKMPYVAIKPKVS 67

Query: 93  QHIVDSNIKIDQDVYCAPQ 111
               +  I + + +Y   +
Sbjct: 68  ----NPEIYVGEVLYVDER 82

>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B* Length = 104

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 33  VGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSH 92
           +GK+L+      LI      P   L+  +  DK  + +G + DV GPV  P   ++    
Sbjct: 11  LGKVLHYAKQGFLIVRTNWVP--SLNDRVV-DKRLQFVGIVKDVFGPVKMPYVAIKPKV- 66

Query: 93  QHIVDSNIKIDQDVYCAPQT 112
               +  I + + +Y   + 
Sbjct: 67  ---SNPEIYVGEVLYVDERK 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
2v3m_A	131	NAF1; ribosomal protein, GAR1, snoRNP, phosphoryla	100.0
2eqn_A	103	Hypothetical protein LOC92345; NAF1 domain, hypoth	99.97
3u28_C	114	H/ACA ribonucleoprotein complex subunit 1; pseudou	99.81
2ey4_C	82	Small nucleolar RNP similar to GAR1; trimeric comp	99.73
2hvy_B	104	GAR1, small nucleolar RNP similar to GAR1; H/ACA R	99.72

>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=248.05  Aligned_cols=121  Identities=14%  Similarity=0.361  Sum_probs=83.5

Q ss_pred             CCCCcccCCCCCCCCCCCCCccccC-CCCceeeceeEEeeecCeEEEEeCCC--CCCCCCCCeEEecCCCeeeEEEEeee
Q psy8580           1 MKSTRNKGELDLGDLPPIEDLQISV-PEDQCLPVGKILNIVDTLVLIKTLKN--TPTLDLDSVLFLDKGQRSLGKIFDVI   77 (274)
Q Consensus         1 ~~~~rTknEl~~e~LPpi~~l~i~l-Pe~~I~~LGtV~sIVe~~VVVks~~~--~~VLd~gSvLclEnDRt~IGkV~EVF   77 (274)
                      |.|+|||||+..+.||++|+ .++| |+++|++||+|+|+|++.+||++..+  .++|++||+||+| ||++||+|+|||
T Consensus         1 ~~p~rtknE~~~~~~p~~p~-~~~i~~~~~v~~lG~i~~ive~~vVik~~~~g~~~vl~~~s~l~le-dr~~IGkV~EiF   78 (131)
T 2v3m_A            1 MGPILSKNEILEETVPELPE-DYEISEKTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLE-DRTLIGMLTEVF   78 (131)
T ss_dssp             --------------CCCCCT-TCCCCTTSCEEEEEEEEEEETTEEEEEEC-----CCCCTTCEEEET-TCCEEEECCEEE
T ss_pred             CCCcccccccccccCCCCCC-ceecCCCCEEEEeeeEEEEeCCcEEEEecCCCCccccCCCCEEEec-CCcEEEEEEEEe
Confidence            78999999998888999995 3455 45689999999999999999999863  4899999999999 599999999999


Q ss_pred             cCCCCcEEEEEeCCC--cccccccccCCCeeeecCCCCceeeccCccccc
Q psy8580          78 GPVSGPVYCVRFNSH--QHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIK  125 (274)
Q Consensus        78 GPV~~PyYsVRfns~--e~I~~~~l~vG~kVYyvP~~~~t~~V~t~~l~~  125 (274)
                      |||++|||+|||+++  +++.+.++++|++|||+|  +|++||++.+|+.
T Consensus        79 GpV~~P~ysVk~~~~~~e~i~~~~~~~G~kvY~~~--~~s~fv~t~~~~~  126 (131)
T 2v3m_A           79 GPLQNPFYRIKLPDSKKNLFDELKVRLGEKAFIVT--PDAHWIDTFELKH  126 (131)
T ss_dssp             SCSSSCEEEEECCGGGHHHHHHHHTTTTSEEEEEC---------------
T ss_pred             CCCCCcEEEEEeCCcchhhhhhcccCCCCEEEECc--CccceEechhhcc
Confidence            999999999999977  678888999999999998  5899999999974

>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.97  E-value=6.7e-31  Score=211.14  Aligned_cols=97  Identities=40%  Similarity=0.828  Sum_probs=92.7

Q ss_pred             CCCCCCCCCccccCCCC-ceeeceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeC
Q psy8580          12 LGDLPPIEDLQISVPED-QCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFN   90 (274)
Q Consensus        12 ~e~LPpi~~l~i~lPe~-~I~~LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfn   90 (274)
                      +++|||+|+++|++|++ +|++||+|+|+|++.+||++....++|++||+||+| ||+.||+|+||||||++|||+|||+
T Consensus         6 ~~~lPp~~~~~i~~~~~~~v~~lG~v~~~~e~~vvik~~~~~~vl~~~s~l~~e-dk~~IGkV~EiFGpV~~PyysVk~~   84 (103)
T 2eqn_A            6 SGELPSVEELTIILPEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKS-DRQAAGKIFEIFGPVAHPFYVLRFN   84 (103)
T ss_dssp             SCCCSSCCCCCCBCCTTSCCEEEEEEEEECSSSEEEEECSSCCCCCTTCEEECT-TSBEEEEEEEEESCSSSCEEEECCS
T ss_pred             cccCCCCCCcceEcCCCCeeEEeEEEEEEcCCeEEEEeCCCCcCCcCCCEEEec-CCcEEEEEEEEECCCCCCEEEEEeC
Confidence            58999999999999887 999999999999999999999888899999999999 5999999999999999999999999


Q ss_pred             CCcccccccccCCCeeeec
Q psy8580          91 SHQHIVDSNIKIDQDVYCA  109 (274)
Q Consensus        91 s~e~I~~~~l~vG~kVYyv  109 (274)
                      +.+++.+.++++|++|||+
T Consensus        85 ~~~~i~a~~~~~G~kvY~~  103 (103)
T 2eqn_A           85 SSDHIESKGIKIKETMYFA  103 (103)
T ss_dssp             SHHHHHHHTCCTTCEEEEC
T ss_pred             cccccccccccCCCEEEeC
Confidence            9889988999999999995

>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C

Probab=99.81  E-value=7.5e-20  Score=149.59  Aligned_cols=84  Identities=17%  Similarity=0.428  Sum_probs=75.8

Q ss_pred             cCCCCceeeceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCC
Q psy8580          24 SVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKID  103 (274)
Q Consensus        24 ~lPe~~I~~LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG  103 (274)
                      +-|++++++||+++|.|++.+||+++. ..++.+|+.||++| ++.||+|+|||||+++||++|++.  +.+.+.++++|
T Consensus        21 ~gpp~~v~elG~f~H~ceg~lV~k~~~-~~VP~fNapVy~en-K~~IGKVdEIFGPin~~YfsVK~~--~gv~a~Sfk~g   96 (114)
T 3u28_C           21 MGPPDTVLEMGAFLHPCEGDIVCRSIN-TKIPYFNAPIYLEN-KTQVGKVDEILGPLNEVFFTIKCG--DGVQATSFKEG   96 (114)
T ss_dssp             --CCSCEEEEEEEEEEETTEEEEEECS-SSEECTTCEEECTT-CCEEEEEEEEESBTTSCEEEEEEC--TTCCGGGCCTT
T ss_pred             CCCCHHHheeeeEEEEeCCeEEEEeCC-CCCCCCCCEeEccC-CccceeEeEEeCCCCccEEEEEec--CCCcccccccC
Confidence            358899999999999999999999985 47999999999995 999999999999999999999988  56666789999


Q ss_pred             CeeeecCC
Q psy8580         104 QDVYCAPQ  111 (274)
Q Consensus       104 ~kVYyvP~  111 (274)
                      ++||+++.
T Consensus        97 dk~YId~~  104 (114)
T 3u28_C           97 DKFYIAAD  104 (114)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECcc
Confidence            99999975

>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C

Probab=99.73  E-value=6e-18  Score=131.13  Aligned_cols=75  Identities=17%  Similarity=0.308  Sum_probs=65.1

Q ss_pred             CceeeceeEEeee-cCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCCCee
Q psy8580          28 DQCLPVGKILNIV-DTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDV  106 (274)
Q Consensus        28 ~~I~~LGtV~sIV-e~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG~kV  106 (274)
                      ++|++||+|+|+| ++.+||+++   .++.+|+.||+++ ++.||+|+||||||++||++|++.+.   ...++ +|++|
T Consensus         6 ~~mk~lG~~~h~~~~g~lV~k~~---~~P~~na~Vy~e~-~~~IGkV~dIfGPv~~pY~sVk~~~~---~~~s~-~g~kl   77 (82)
T 2ey4_C            6 EKMKRLGKVLHYAKQGFLIVRTN---WVPSLNDRVVDKR-LQFVGIVKDVFGPVKMPYVAIKPKVS---NPEIY-VGEVL   77 (82)
T ss_dssp             --CBCCCCEEEEETTTEEEEECS---SCCCTTCEEECTT-CCCCEEEEEEEEESSSCEEEEEECSS---SCSTT-BTCCC
T ss_pred             ceeEEeEEEEEEcCCCCEEEEeC---CCCCCCCEeEcCC-CCEeEEEEEEECCCCCcEEEEEeCCC---Chhhc-CCCeE
Confidence            4799999999999 999999985   6999999999995 99999999999999999999999852   23455 99999


Q ss_pred             eecC
Q psy8580         107 YCAP  110 (274)
Q Consensus       107 YyvP  110 (274)
                      |++|
T Consensus        78 Yi~~   81 (82)
T 2ey4_C           78 YVDE   81 (82)
T ss_dssp             EEC-
T ss_pred             EecC
Confidence            9986

>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*

Probab=99.72  E-value=2e-17  Score=133.38  Aligned_cols=76  Identities=18%  Similarity=0.357  Sum_probs=64.9

Q ss_pred             CceeeceeEEeee-cCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCCCee
Q psy8580          28 DQCLPVGKILNIV-DTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDV  106 (274)
Q Consensus        28 ~~I~~LGtV~sIV-e~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG~kV  106 (274)
                      ++|++||+|+|+| ++.+||+++   .++.+|+.||+++ ++.||+|+||||||++||++|++.+. .   ....+|++|
T Consensus         6 ~~mk~lG~~~H~~~~g~lVvk~~---~vP~~na~Vy~en-k~~IGKV~DIfGPV~~pY~sVKp~~~-s---~~~~~G~kl   77 (104)
T 2hvy_B            6 EKMKRLGKVLHYAKQGFLIVRTN---WVPSLNDRVVDKR-LQFVGIVKDVFGPVKMPYVAIKPKVS-N---PEIYVGEVL   77 (104)
T ss_dssp             --CEEEEEEEEEETTTEEEEECS---SCCCTTCEEECTT-CCEEEEEEEEEEESSSCEEEEEECSS-C---GGGGTTCEE
T ss_pred             ceeeEeEEEEEEcCCCCEEEEeC---CCCCCCCEeEcCC-CCEeEEEEEEECCCCCcEEEEEecCC-C---ccccCCCEE
Confidence            4799999999999 999999985   6999999999995 99999999999999999999999852 1   122299999


Q ss_pred             eecCC
Q psy8580         107 YCAPQ  111 (274)
Q Consensus       107 YyvP~  111 (274)
                      |+.+.
T Consensus        78 YI~~~   82 (104)
T 2hvy_B           78 YVDER   82 (104)
T ss_dssp             EECC-
T ss_pred             EEcCc
Confidence            99975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d2ey4c1	73	b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Py	1e-14

>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 73

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Gar1-like SnoRNP
domain: Gar1 homolog PF1791
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 65.1 bits (159), Expect = 1e-14
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 32  PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNS 91
            +GK+L+      LI      P   L+  +   + Q  +G + DV GPV  P   ++   
Sbjct: 3   RLGKVLHYAKQGFLIVRTNWVP--SLNDRVVDKRLQF-VGIVKDVFGPVKMPYVAIKPKV 59

Query: 92  HQHIVDSNIKIDQDVYC 108
                   I + + +Y 
Sbjct: 60  SNPE----IYVGEVLYV 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d2ey4c1	73	Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus	99.81

>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Gar1-like SnoRNP
domain: Gar1 homolog PF1791
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.81  E-value=2.6e-20  Score=139.83  Aligned_cols=73  Identities=21%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             eeeceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCCCeeeec
Q psy8580          30 CLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCA  109 (274)
Q Consensus        30 I~~LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG~kVYyv  109 (274)
                      |++||+|+|++++.+||++..  .++.+|++||++ +++.||+|+||||||++|||+|++++...    ...+|++||++
T Consensus         1 Mk~lG~i~hi~~~~~vI~~~~--~~p~~~~~v~~~-~~~~iG~v~evfGpv~~P~~~v~~~~~~~----~~~vG~kvYvd   73 (73)
T d2ey4c1           1 MKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDK-RLQFVGIVKDVFGPVKMPYVAIKPKVSNP----EIYVGEVLYVD   73 (73)
T ss_dssp             CBCCCCEEEEETTTEEEEECS--SCCCTTCEEECT-TCCCCEEEEEEEEESSSCEEEEEECSSSC----STTBTCCCEEC
T ss_pred             CcEeEEEEEEcCCceEEEECC--CCCCCCCEeECc-CCcEEEEEEEEECCCCCcEEEEEECCCCh----hHhCCCeEEeC
Confidence            678999999999877776653  689999999998 59999999999999999999999987644    24689999985