Psyllid ID: psy8611

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
MKSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQVSRIE
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mksilkqlggwpvledkglLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALvsnteehaSVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLfnccpsdsilivgtqgrtvsggfrsdicdeqVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQVSRIE
mksilkqlggwpvlEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLalvsnteehasvSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLElagrsdksiqaaHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMgyqqqvsrie
MKSILKQLGGWPVLEDKGllldslesqlshlhssVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQVSRIE
*****KQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGY********
*****KQ*GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEH*SVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQ*******************************VRIKYLLKTLFNC****************SGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQ*****
MKSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQVSRIE
*KSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQG*****GFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQVS***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRxxxxxxxxxxxxxxxxxxxxxEFKDTMVKYLEELMGYQQQVSRIE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query280 2.2.26 [Sep-21-2011]
O60749519 Sorting nexin-2 OS=Homo s yes N/A 0.764 0.412 0.342 1e-34
Q9CWK8519 Sorting nexin-2 OS=Mus mu yes N/A 0.764 0.412 0.338 2e-34
Q2TBW7519 Sorting nexin-2 OS=Bos ta yes N/A 0.764 0.412 0.334 2e-32
Q5R9A9523 Sorting nexin-2 OS=Pongo yes N/A 0.778 0.416 0.334 3e-31
P0C220523 Sorting nexin-2 OS=Macaca N/A N/A 0.778 0.416 0.334 3e-31
Q99N27522 Sorting nexin-1 OS=Rattus no N/A 0.725 0.388 0.312 2e-28
Q4R503522 Sorting nexin-1 OS=Macaca N/A N/A 0.725 0.388 0.312 4e-28
Q13596522 Sorting nexin-1 OS=Homo s no N/A 0.725 0.388 0.312 4e-28
Q5RFP8522 Sorting nexin-1 OS=Pongo no N/A 0.725 0.388 0.312 5e-28
Q9WV80522 Sorting nexin-1 OS=Mus mu no N/A 0.725 0.388 0.312 1e-27
>sp|O60749|SNX2_HUMAN Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=1 SV=2 Back     alignment and function desciption
 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 137/266 (51%), Gaps = 52/266 (19%)

Query: 5   LKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEE 64
           + +   W   E+K    ++L+ QL  LH SVEAL   R++LS  +A  AKS A++ N+E+
Sbjct: 299 MNESDAW--FEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSED 356

Query: 65  HASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQT 124
           H ++SR +S L E+ E+ + ++  +A AD  + +EL  DY+ LIAAVK  F  R K +Q 
Sbjct: 357 HTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQK 416

Query: 125 WQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGT 184
           W+  QI L KKREA+ K+ +A + DK  QA +E+ E                        
Sbjct: 417 WEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIRE------------------------ 452

Query: 185 QGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMV 244
                                WE KV++ + DF  IS  I++E   FE  RV++FK  ++
Sbjct: 453 ---------------------WEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVII 491

Query: 245 KYLEELMGYQQQEFKDTMVKYLEELM 270
           KYLE L+  QQQ     ++KY E  +
Sbjct: 492 KYLESLVQTQQQ-----LIKYWEAFL 512
May be involved in several stages of intracellular trafficking. Component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).
Homo sapiens (taxid: 9606)
>sp|Q9CWK8|SNX2_MOUSE Sorting nexin-2 OS=Mus musculus GN=Snx2 PE=1 SV=2 Back     alignment and function description
>sp|Q2TBW7|SNX2_BOVIN Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R9A9|SNX2_PONAB Sorting nexin-2 OS=Pongo abelii GN=SNX2 PE=2 SV=1 Back     alignment and function description
>sp|P0C220|SNX2_MACFA Sorting nexin-2 OS=Macaca fascicularis GN=SNX2 PE=2 SV=1 Back     alignment and function description
>sp|Q99N27|SNX1_RAT Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 SV=1 Back     alignment and function description
>sp|Q4R503|SNX1_MACFA Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=2 SV=1 Back     alignment and function description
>sp|Q13596|SNX1_HUMAN Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3 Back     alignment and function description
>sp|Q5RFP8|SNX1_PONAB Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9WV80|SNX1_MOUSE Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
346470957 474 hypothetical protein [Amblyomma maculatu 0.746 0.440 0.382 3e-39
170039229 449 sorting nexin [Culex quinquefasciatus] g 0.871 0.543 0.391 3e-39
380011460 510 PREDICTED: sorting nexin-2-like [Apis fl 0.739 0.405 0.369 8e-39
340727340 511 PREDICTED: sorting nexin-2-like [Bombus 0.739 0.405 0.365 1e-38
427783881 497 hypothetical protein [Rhipicephalus pulc 0.746 0.420 0.378 1e-38
350421046 511 PREDICTED: sorting nexin-2-like [Bombus 0.739 0.405 0.365 1e-38
193634313 512 PREDICTED: sorting nexin-2-like [Acyrtho 0.707 0.386 0.374 1e-38
322790891 477 hypothetical protein SINV_01576 [Solenop 0.739 0.433 0.377 1e-38
443703630361 hypothetical protein CAPTEDRAFT_156986 [ 0.739 0.573 0.365 2e-38
296531441 494 sorting nexin 2 [Saccoglossus kowalevski 0.728 0.412 0.370 2e-38
>gi|346470957|gb|AEO35323.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 138/259 (53%), Gaps = 50/259 (19%)

Query: 12  PVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRV 71
           P  E+K   +D+L+ QL  LH+SVE +   RR+LS  +   AKS A++ N EEH  +SR 
Sbjct: 259 PWFEEKQQQIDNLDIQLKRLHASVENMVQQRRELSQSTGAFAKSAAMLGNCEEHTGLSRA 318

Query: 72  VSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQII 131
           +S L E+ ER E +   +A  D   LAEL +DY+ L+ A+KD FH R K+YQTWQ  Q +
Sbjct: 319 LSKLAEVGERVEQLQGRQANHDFYCLAELVKDYLSLVGAIKDVFHQRVKVYQTWQHAQQM 378

Query: 132 LNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSG 191
           L +KREAK KLELA +SDK  QA  EV E                               
Sbjct: 379 LARKREAKAKLELAAKSDKIPQARQEVLE------------------------------- 407

Query: 192 GFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELM 251
                         WE KVER QE+F  +S +I+ E   FE +R+ +F++++V+Y E L+
Sbjct: 408 --------------WEAKVERGQEEFDNVSRVIRTEMDRFELNRIADFRNSVVRYFEFLL 453

Query: 252 GYQQQEFKDTMVKYLEELM 270
             QQQ     ++KY E  +
Sbjct: 454 DTQQQ-----LIKYWETFL 467

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|170039229|ref|XP_001847445.1| sorting nexin [Culex quinquefasciatus] gi|167862815|gb|EDS26198.1| sorting nexin [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|380011460|ref|XP_003689821.1| PREDICTED: sorting nexin-2-like [Apis florea] Back     alignment and taxonomy information
>gi|340727340|ref|XP_003402004.1| PREDICTED: sorting nexin-2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|427783881|gb|JAA57392.1| hypothetical protein [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|350421046|ref|XP_003492713.1| PREDICTED: sorting nexin-2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|193634313|ref|XP_001945839.1| PREDICTED: sorting nexin-2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|322790891|gb|EFZ15557.1| hypothetical protein SINV_01576 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|443703630|gb|ELU01066.1| hypothetical protein CAPTEDRAFT_156986 [Capitella teleta] Back     alignment and taxonomy information
>gi|296531441|ref|NP_001171861.1| sorting nexin 2 [Saccoglossus kowalevskii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
FB|FBgn0031534458 Snx1 "Sorting nexin 1" [Drosop 0.532 0.325 0.375 3.2e-35
UNIPROTKB|F1NZX7518 SNX2 "Uncharacterized protein" 0.45 0.243 0.452 3e-34
UNIPROTKB|B4DEK4402 SNX2 "cDNA FLJ51799, highly si 0.464 0.323 0.430 4.7e-34
UNIPROTKB|F1PMB5402 SNX2 "Uncharacterized protein" 0.464 0.323 0.423 1.6e-33
UNIPROTKB|O60749519 SNX2 "Sorting nexin-2" [Homo s 0.464 0.250 0.430 5.1e-33
UNIPROTKB|P0C220523 SNX2 "Sorting nexin-2" [Macaca 0.45 0.240 0.436 7e-33
UNIPROTKB|Q5R9A9523 SNX2 "Sorting nexin-2" [Pongo 0.45 0.240 0.436 7e-33
UNIPROTKB|F1MZN7519 SNX2 "Sorting nexin-2" [Bos ta 0.464 0.250 0.423 1.4e-32
UNIPROTKB|Q2TBW7519 SNX2 "Sorting nexin-2" [Bos ta 0.464 0.250 0.423 1.4e-32
MGI|MGI:1915054519 Snx2 "sorting nexin 2" [Mus mu 0.464 0.250 0.423 1.8e-32
FB|FBgn0031534 Snx1 "Sorting nexin 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 253 (94.1 bits), Expect = 3.2e-35, Sum P(2) = 3.2e-35
 Identities = 56/149 (37%), Positives = 86/149 (57%)

Query:    12 PVLEDKGXXXXXXXXXXXXXXXXVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRV 71
             P  +DK                 +++L  +RR+LS+ +  +AKS A++S  EEH  +SR 
Sbjct:   243 PWFDDKITGVESLDANLQKLHNAMKSLVTSRRELSLLTGLVAKSAAMLSTCEEHTGLSRA 302

Query:    72 VSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQII 131
             +S L ++ E+ E + + +A +D  ILAE  +DY+ L  A+K  FH R K +Q WQ  Q+ 
Sbjct:   303 LSNLADVEEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIFHERVKAFQNWQYAQMQ 362

Query:   132 LNKKREAKVKLELAGRSDKSIQAAHEVTE 160
             L+K+RE + + ELA R+DK  QA  EV E
Sbjct:   363 LSKRRENRGRFELANRADKLDQAQQEVDE 391
GO:0006886 "intracellular protein transport" evidence=ISS
GO:0035091 "phosphatidylinositol binding" evidence=IEA
GO:0061357 "positive regulation of Wnt protein secretion" evidence=IMP
UNIPROTKB|F1NZX7 SNX2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B4DEK4 SNX2 "cDNA FLJ51799, highly similar to Sorting nexin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PMB5 SNX2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O60749 SNX2 "Sorting nexin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P0C220 SNX2 "Sorting nexin-2" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R9A9 SNX2 "Sorting nexin-2" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZN7 SNX2 "Sorting nexin-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBW7 SNX2 "Sorting nexin-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1915054 Snx2 "sorting nexin 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
cd07623224 cd07623, BAR_SNX1_2, The Bin/Amphiphysin/Rvs (BAR) 4e-66
cd07664234 cd07664, BAR_SNX2, The Bin/Amphiphysin/Rvs (BAR) d 5e-41
pfam09325236 pfam09325, Vps5, Vps5 C terminal like 1e-39
cd07665234 cd07665, BAR_SNX1, The Bin/Amphiphysin/Rvs (BAR) d 7e-34
cd07627216 cd07627, BAR_Vps5p, The Bin/Amphiphysin/Rvs (BAR) 3e-16
cd07596218 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) do 4e-14
>gnl|CDD|153307 cd07623, BAR_SNX1_2, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 Back     alignment and domain information 
 Score =  205 bits (524), Expect = 4e-66
 Identities = 101/253 (39%), Positives = 143/253 (56%), Gaps = 50/253 (19%)

Query: 15  EDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVST 74
           E+K   +++L+ QL  LH+SVE+L   R++L++ +   AKS A++SN EEH S+SR +S 
Sbjct: 15  EEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQ 74

Query: 75  LGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNK 134
           L E+ E+ E ++  +A  D  ILAEL +DY+ LI A+KD FH R K++Q WQ+ Q  L K
Sbjct: 75  LAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTK 134

Query: 135 KREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFR 194
           KREAK KLEL+GR+DK  QA  E+ E                                  
Sbjct: 135 KREAKAKLELSGRTDKLDQAQQEIKE---------------------------------- 160

Query: 195 SDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQ 254
                      WE KV+R Q++F  IS  IK+E   FE +RV++FKD ++KYLE L+  Q
Sbjct: 161 -----------WEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQ 209

Query: 255 QQEFKDTMVKYLE 267
           QQ     ++KY E
Sbjct: 210 QQ-----LIKYWE 217

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 224
>gnl|CDD|153348 cd07664, BAR_SNX2, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 Back     alignment and domain information
>gnl|CDD|220180 pfam09325, Vps5, Vps5 C terminal like Back     alignment and domain information
>gnl|CDD|153349 cd07665, BAR_SNX1, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1 Back     alignment and domain information
>gnl|CDD|153311 cd07627, BAR_Vps5p, The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p Back     alignment and domain information
>gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 280
cd07665234 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S 100.0
cd07664234 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S 100.0
cd07623224 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
cd07627216 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
PF09325236 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp 100.0
cd07621219 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
cd07662218 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S 100.0
cd07663218 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S 100.0
cd07630198 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain 100.0
cd07624200 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o 100.0
cd07596218 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So 100.0
cd07625230 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
cd07666243 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S 100.0
cd07667240 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
cd07628185 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of 99.98
cd07622201 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.98
cd07598211 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of 99.97
cd07626199 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain 99.95
cd07629187 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of 99.94
KOG2273|consensus503 99.93
PF10456237 BAR_3_WASP_bdg: WASP-binding domain of Sorting nex 99.9
cd07670207 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of 99.88
cd07668210 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.88
cd07669207 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of 99.87
KOG1660|consensus399 99.82
cd07597246 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.74
cd07307194 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri 99.68
PF03114229 BAR: BAR domain; InterPro: IPR004148 Endocytosis a 99.5
smart00721239 BAR BAR domain. 99.32
cd07590225 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B 99.23
PF06730219 FAM92: FAM92 protein; InterPro: IPR009602 This fam 99.18
cd07588211 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma 99.14
cd07591224 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o 99.1
cd07599216 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o 99.02
cd07611211 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) 98.97
cd07612211 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B 98.96
cd07604215 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of 98.84
KOG2528|consensus490 98.82
cd07601215 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A 98.79
cd07660201 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain 98.75
PF06456229 Arfaptin: Arfaptin-like domain; InterPro: IPR01050 98.73
cd07593215 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom 98.73
cd00011203 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do 98.72
cd07603200 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of 98.71
cd07637200 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of 98.67
cd07606202 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain 98.67
cd07639200 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of 98.65
cd07589195 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of 98.62
KOG3771|consensus 460 98.58
cd07602207 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR 98.57
COG5391524 Phox homology (PX) domain protein [Intracellular t 98.56
cd07595244 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) 98.55
cd07638200 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of 98.5
cd07615223 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do 98.5
cd07592223 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom 98.43
cd07594229 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom 98.38
cd07614223 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do 98.36
cd07618246 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of 98.35
cd07659215 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of 98.32
cd07613223 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do 98.29
cd07642215 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of 98.25
cd07632215 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of 98.25
cd07641215 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of 98.23
cd07636207 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G 98.21
cd07619248 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of 98.15
cd07634207 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai 98.14
cd07631215 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of 98.11
cd07633207 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of 98.04
cd07617220 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do 98.02
cd07600242 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of 98.0
cd07635207 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of 98.0
cd07616229 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do 97.93
PF13805271 Pil1: Eisosome component PIL1; PDB: 3PLT_B. 97.7
cd07640213 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of 97.61
cd07648261 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am 97.45
PF10455289 BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr 97.28
cd07620257 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of 97.25
PF08397219 IMD: IRSp53/MIM homology domain; InterPro: IPR0136 97.14
cd07674261 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A 96.86
cd07649233 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am 96.68
KOG0521|consensus 785 96.66
cd07605223 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5 96.6
KOG3725|consensus 375 96.52
KOG3651|consensus429 96.41
cd07673269 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A 96.2
cd07661204 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of 95.95
cd07658239 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin 95.85
KOG3876|consensus341 95.45
cd07653251 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B 95.18
cd07643231 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I 94.78
KOG1118|consensus366 94.46
cd07650228 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and 94.29
KOG1451|consensus 812 94.13
cd07651236 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology 93.38
cd07655258 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/ 92.14
cd07647239 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/ 89.88
cd07610191 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or 87.15
cd07675252 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/ 85.8
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 84.52
cd07671242 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin 83.64
cd07629187 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of 83.18
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1 Back     alignment and domain information 
Probab=100.00  E-value=1.4e-53  Score=382.20  Aligned_cols=223  Identities=37%  Similarity=0.578  Sum_probs=219.7

Q ss_pred             CcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q psy8611           2 KSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYER   81 (280)
Q Consensus         2 ~~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~   81 (280)
                      ||++||.|||+||++++.||+.||.||+.|+++++.|+++|++|+.++.+||.++..||++|.+++|+++|+.||+++++
T Consensus        12 ~~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~   91 (234)
T cd07665          12 KMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEK   91 (234)
T ss_pred             ccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q psy8611          82 TEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEV  161 (280)
Q Consensus        82 ~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~  161 (280)
                      ++.++.+++.+|..+|++||+||+|+|+|||.+|++|.++|++|++++.+|.|+|++++||...+++||+++++.|+.  
T Consensus        92 i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~--  169 (234)
T cd07665          92 IEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIA--  169 (234)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999999988889999999999998  


Q ss_pred             HHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy8611         162 RIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKD  241 (280)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~  241 (280)
                                                                 +++.++++++.+|+.||+.|+.|+.||+.+|+.|||+
T Consensus       170 -------------------------------------------e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~  206 (234)
T cd07665         170 -------------------------------------------EWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKN  206 (234)
T ss_pred             -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                       9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611         242 TMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ  274 (280)
Q Consensus       242 ~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~  274 (280)
                      +|.+|++++|++|++     +++.||+|+|+++
T Consensus       207 ~v~~fles~ie~qke-----~ie~We~flp~~~  234 (234)
T cd07665         207 HIIKYLETLLHSQQQ-----LVKYWEAFLPEAK  234 (234)
T ss_pred             HHHHHHHHHHHHHHH-----HHHHHHHhccccC
Confidence            999999999999999     9999999999863

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 Back     alignment and domain information
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 Back     alignment and domain information
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p Back     alignment and domain information
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking Back     alignment and domain information
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6 Back     alignment and domain information
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6 Back     alignment and domain information
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5 Back     alignment and domain information
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins Back     alignment and domain information
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30 Back     alignment and domain information
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins Back     alignment and domain information
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p Back     alignment and domain information
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7 Back     alignment and domain information
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30 Back     alignment and domain information
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p Back     alignment and domain information
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4 Back     alignment and domain information
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) Back     alignment and domain information
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins Back     alignment and domain information
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p Back     alignment and domain information
>KOG2273|consensus Back     alignment and domain information
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain Back     alignment and domain information
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18 Back     alignment and domain information
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 Back     alignment and domain information
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33 Back     alignment and domain information
>KOG1660|consensus Back     alignment and domain information
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8 Back     alignment and domain information
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature Back     alignment and domain information
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment Back     alignment and domain information
>smart00721 BAR BAR domain Back     alignment and domain information
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3 Back     alignment and domain information
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length Back     alignment and domain information
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins Back     alignment and domain information
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins Back     alignment and domain information
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins Back     alignment and domain information
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II Back     alignment and domain information
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2 Back     alignment and domain information
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins Back     alignment and domain information
>KOG2528|consensus Back     alignment and domain information
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins Back     alignment and domain information
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin Back     alignment and domain information
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules Back     alignment and domain information
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins Back     alignment and domain information
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes Back     alignment and domain information
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins Back     alignment and domain information
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3 Back     alignment and domain information
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC) Back     alignment and domain information
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1 Back     alignment and domain information
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein Back     alignment and domain information
>KOG3771|consensus Back     alignment and domain information
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins Back     alignment and domain information
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] Back     alignment and domain information
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins Back     alignment and domain information
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2 Back     alignment and domain information
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3 Back     alignment and domain information
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A Back     alignment and domain information
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B Back     alignment and domain information
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2 Back     alignment and domain information
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1 Back     alignment and domain information
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1 Back     alignment and domain information
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1 Back     alignment and domain information
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2 Back     alignment and domain information
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2 Back     alignment and domain information
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1 Back     alignment and domain information
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase Back     alignment and domain information
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2 Back     alignment and domain information
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like Back     alignment and domain information
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1 Back     alignment and domain information
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1 Back     alignment and domain information
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2 Back     alignment and domain information
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins Back     alignment and domain information
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2 Back     alignment and domain information
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1 Back     alignment and domain information
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B Back     alignment and domain information
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3 Back     alignment and domain information
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins Back     alignment and domain information
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment Back     alignment and domain information
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1 Back     alignment and domain information
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family Back     alignment and domain information
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein Back     alignment and domain information
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7 Back     alignment and domain information
>KOG0521|consensus Back     alignment and domain information
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes Back     alignment and domain information
>KOG3725|consensus Back     alignment and domain information
>KOG3651|consensus Back     alignment and domain information
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein Back     alignment and domain information
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa Back     alignment and domain information
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN) Back     alignment and domain information
>KOG3876|consensus Back     alignment and domain information
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins Back     alignment and domain information
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis Back     alignment and domain information
>KOG1118|consensus Back     alignment and domain information
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein Back     alignment and domain information
>KOG1451|consensus Back     alignment and domain information
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins Back     alignment and domain information
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins Back     alignment and domain information
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins Back     alignment and domain information
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes Back     alignment and domain information
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1 Back     alignment and domain information
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
4akv_A386 Sorting nexin-33; transport protein, organelle bio 5e-09
4akv_A386 Sorting nexin-33; transport protein, organelle bio 3e-05
3dyt_A366 Sorting nexin-9; 3-helix bundle, BAR domain, PX do 5e-06
3dyt_A366 Sorting nexin-9; 3-helix bundle, BAR domain, PX do 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386 Back     alignment and structure
 Score = 55.2 bits (132), Expect = 5e-09
 Identities = 19/143 (13%), Positives = 49/143 (34%), Gaps = 9/143 (6%)

Query: 21  LDSLESQLSHLHSSVEALALAR--------RDLSVYSAHLAKSLALVSNTEEHASVSRVV 72
              ++  +  L +    L            + L      ++ S  +        +++  +
Sbjct: 197 SKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQM-DPPFCSEALNSAI 255

Query: 73  STLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIIL 132
           S  G  YE    ++A +   DL  + +    Y  L++   D  H +   +   +  Q + 
Sbjct: 256 SHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMS 315

Query: 133 NKKREAKVKLELAGRSDKSIQAA 155
           ++ R  + + +   R  + +  A
Sbjct: 316 DEGRMVQDEADGIRRRCRVVGFA 338
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386 Back     alignment and structure
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366 Back     alignment and structure
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
3dyt_A366 Sorting nexin-9; 3-helix bundle, BAR domain, PX do 99.96
4akv_A386 Sorting nexin-33; transport protein, organelle bio 99.95
1uru_A244 Amphiphysin; endocytosis, coiled-coil, membrane cu 99.66
2fic_A251 Bridging integrator 1; BAR domain, homodimer, coil 99.65
4avm_A237 Bridging integrator 2; protein binding, plasma mem 99.08
4a3a_A243 Amphiphysin; structural genomics, invagination, kn 98.94
1zww_A256 SH3-containing GRB2-like protein 2; coiled coil, t 98.87
2q12_A265 DIP13 alpha, DCC-interacting protein 13 alpha; APP 98.86
2q13_A 385 DCC-interacting protein 13 alpha; APPL1, BAR domai 98.77
1i4d_A224 Arfaptin 2, partner of RAC1; coiled coil, G-protei 98.71
2z0v_A240 SH3-containing GRB2-like protein 3; helix bundle, 98.67
4h8s_A 407 DCC-interacting protein 13-beta; BAR domain, pleck 98.23
2ykt_A253 Brain-specific angiogenesis inhibitor 1-associate 97.17
3plt_A234 Sphingolipid long chain base-responsive protein L; 96.84
2v0o_A276 FCHO2, FCH domain only protein 2; lipid-binding pr 96.7
3i2w_A290 Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt 96.33
2efl_A305 Formin-binding protein 1; EFC domain, structural g 96.03
2d1l_A253 Metastasis suppressor protein 1; IRSP53, actin bin 96.03
2efk_A301 CDC42-interacting protein 4; EFC domain, structura 95.97
3haj_A 486 Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, 95.54
3aco_A350 Pacsin2, protein kinase C and casein kinase substr 95.23
3m3w_A320 Pacsin3, protein kinase C and casein kinase II sub 95.16
2x3v_A337 Syndapin I, protein kinase C and casein kinase sub 94.36
3abh_A312 Pacsin2, protein kinase C and casein kinase substr 94.13
3g9g_A287 Suppressor of yeast profilin deletion; SYP1, BAR d 92.81
4dyl_A 406 Tyrosine-protein kinase FES/FPS; structural genomi 91.83
3plt_A234 Sphingolipid long chain base-responsive protein L; 84.75
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Back     alignment and structure
Probab=99.96  E-value=1.3e-27  Score=226.29  Aligned_cols=196  Identities=14%  Similarity=0.222  Sum_probs=172.4

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhcc------ccchhHHHHHHHHHHHH
Q psy8611           7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALA-RRDLSVYSAHLAKSLALVSNT------EEHASVSRVVSTLGELY   79 (280)
Q Consensus         7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~-r~dl~~~~~e~~~s~~~Ls~~------E~~~~ls~~l~~la~~~   79 (280)
                      +.+.|++|+..+.|+..|+.++++|.+.+++++++ +.+++.++.++|.+|..||.+      +.+++|+++|+.+|+++
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~  242 (366)
T 3dyt_A          163 LVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTY  242 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence            45668899999999999999999999999999977 688999999999999999974      66789999999999999


Q ss_pred             HHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q psy8611          80 ERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVT  159 (280)
Q Consensus        80 ~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~  159 (280)
                      +.++.++++++.+|..+|+++|++|+++++|+|++|+.|..++.          |+++. .|+...++++.     .   
T Consensus       243 ~~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~----------k~~e~-~kl~~~~K~~~-----~---  303 (366)
T 3dyt_A          243 EEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIE----------KVKES-DKLVATSKITL-----Q---  303 (366)
T ss_dssp             HHHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----------HHHTH-HHHHHTTSSCH-----H---
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHhccCcch-----h---
Confidence            99999999999999999999999999999999999999976544          44443 24555555431     1   


Q ss_pred             HHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8611         160 EVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEF  239 (280)
Q Consensus       160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~df  239 (280)
                                                                       .+++++++|+.||+.++.|+.||+.+|+.||
T Consensus       304 -------------------------------------------------~~~~~~~r~e~is~~~~~El~rF~~~r~~Df  334 (366)
T 3dyt_A          304 -------------------------------------------------DKQNMVKRVSIMSYALQAEMNHFHSNRIYDY  334 (366)
T ss_dssp             -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                             2356678999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611         240 KDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQ  275 (280)
Q Consensus       240 k~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~  275 (280)
                      +.+|.+|++.||++|++     +++.|+++++.+..
T Consensus       335 k~~l~~yl~~qi~~~k~-----~~~~w~~~l~~~~~  365 (366)
T 3dyt_A          335 NSVIRLYLEQQVQFYET-----IAEKLRQALSRFPV  365 (366)
T ss_dssp             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcC
Confidence            99999999999999999     99999999987643
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Back     alignment and structure
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Back     alignment and structure
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A Back     alignment and structure
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens} Back     alignment and structure
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A Back     alignment and structure
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A Back     alignment and structure
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Back     alignment and structure
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Back     alignment and structure
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Back     alignment and structure
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} Back     alignment and structure
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A Back     alignment and structure
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens} Back     alignment and structure
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster} Back     alignment and structure
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4 Back     alignment and structure
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus} Back     alignment and structure
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4 Back     alignment and structure
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Back     alignment and structure
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens} Back     alignment and structure
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A Back     alignment and structure
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A Back     alignment and structure
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A Back     alignment and structure
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens} Back     alignment and structure
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
d1urua_217 Amphiphysin {Fruit fly (Drosophila melanogaster) [ 99.82
d1i4da_200 Arfaptin, Rac-binding fragment {Human (Homo sapien 99.75
d2d4ca1237 Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} 98.98
d1y2oa1248 BAP2/IRSp53 N-terminal domain {Human (Homo sapiens 98.8
d2elba1268 DCC-interacting protein 13-alpha, APPL1 {Human (Ho 98.6
d2efla1288 Formin-binding protein 1, FNBP1 {Human (Homo sapie 97.1
d2efka1279 CDC42-interacting protein 4, CIP4 {Human (Homo sap 95.55
d1y2oa1248 BAP2/IRSp53 N-terminal domain {Human (Homo sapiens 93.3
d1i4da_200 Arfaptin, Rac-binding fragment {Human (Homo sapien 91.31
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=2.9e-18  Score=145.98  Aligned_cols=202  Identities=11%  Similarity=0.115  Sum_probs=170.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611          11 WPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEA   90 (280)
Q Consensus        11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a   90 (280)
                      |++|++....++.++.+++.|.+.+.......+++......||.+|..++..+.+     +...++.+...+..+..+..
T Consensus        11 D~~fe~~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~   85 (217)
T d1urua_          11 DEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWS-----GYDALQAQTGASESLWADFA   85 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTST-----THHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-----hHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999876653     23344455555555666656


Q ss_pred             hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhh
Q psy8611          91 GADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTL  170 (280)
Q Consensus        91 ~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l  170 (280)
                      ......+..||.+|+.++.+++.++..|.+.+..|..+...+.+.+....+   .....       ++            
T Consensus        86 ~~~~~~v~~pL~~~~~~~~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~---~~~~~-------~l------------  143 (217)
T d1urua_          86 HKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK---RKDDV-------KL------------  143 (217)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCB---TTBCC-------TT------------
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccchh-------hh------------
Confidence            666667999999999999999999999999999999999988876543210   00000       11            


Q ss_pred             ccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8611         171 FNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEEL  250 (280)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~  250 (280)
                                                       ..++.+++.++..|+.++..++.|+.+|...|..+|...|..|+..+
T Consensus       144 ---------------------------------~~~e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q  190 (217)
T d1urua_         144 ---------------------------------TKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATE  190 (217)
T ss_dssp             ---------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                             15677778889999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhhhc
Q psy8611         251 MGYQQQEFKDTMVKYLEELMGYQQQVS  277 (280)
Q Consensus       251 I~~~k~~~~~~~~~~We~~~~~~~~~~  277 (280)
                      +.||++     +.+.|+.+.|.+..++
T Consensus       191 ~~~~~~-----~~~~~~~l~~~~~~l~  212 (217)
T d1urua_         191 QVFHNE-----TAKIYSELEAIVDKLA  212 (217)
T ss_dssp             HHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHHHHHHHhH
Confidence            999999     9999999999998765
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure