Psyllid ID: psy8629

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
Protein Sequence
MRLWRLLWLLAAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNISEHSFK
Secondary Structure (PSIPRED)
cEEEHHHHHHHHHHccccEEEEEEEcccccccEEEEEEccccccccccEEEEEcccccccccccccccEEEEEEcccccccccccccEEEEEccccEEEEEEEccccEEEEcccccHHccccccEEEEEcccccEEEEEEEEEccccccccccccEEEEEEcccccccEEEcccccccccccccccEEEEccccccccEEEEEEEccccEEEEEEEEccccccccccEEEEEEEEEEcccccccEEEEEEEEEEccccccccccccEEEEEEccccccccEEEEEEcccccccccEEEEEEEEcccccccccEEEEccccEEEEccccccccccccccccEEEEEEcccccccccccEEEEEEccccccccccEEEEEEccccccccccEEEEccEEEEEEcccccccccccccEEEEEEEcccccccccEEEEEEEcccccccccccccEEEEEcccccccccEEEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEccccccEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEccccccccccEcccEcccccccccccEEEEEEEEcccccccEEEEcccccEEEEEccccHHHHcccEEEEEEEcccEEEEEEEEEEccccccEEEccEEEEEEccccccccEEEEEEEEccccccccEEEEEEEcccccccEEEEEEccccccEEEEEEEccccccccccEEEEEEEEEEccccEccccEEEEEEEEcccccccEEcccEEEEEEEcccccccEEEEccEEccccccccEEEEEEEccccccccEEEEEcccEEEEEEcccccHEccccccccEEEEEEEEccccccccEEEEEEEEEccccccccEEEEEEccccccccccEEEcccccEEEEEccccHHHHHccEEEEEEEccccccccEEEEEEEEEEEccccccccccccccEEccccccccEEEEEEEEEccccccccEEc
Coil and Loop (DISEMBL)
MRLWRLLWLLAAVAADEHlrdleisegvpvgtrvgfigdgfvgdsgppylivpvpgsavdtdlsieqntgeirtkvpldretrssyslvaiplsgenvrvvsfyepgeirtkvpldretrssyslvaiplsgeNVRVVVRVIdendnaptfpspfmsiefpentprDVKRTLnaakdrdlgiyntqrynivsgntnnafrlsshrekdgvLYLDLqingvldretipEYSLVIEAldggspplrgsmivnvtiqdvndnqpifnqsryfatvpenatvgtSIFQVfatdadagsngeveysinrrqsdkdglfnidsksglIFVNKALDFETKEVHDLVPrfaveissfdeiaepgtsvfqisafdqdeginSVITYSlrentddhpswfqidsksglitmksnvdcetdpvpkltviatdngvpalsssATVLVTIhdvndnepifdqsfynvtipenkpkgscilKSIFYDIFnisehsfk
Flexible Loop (DISEMBL)
MRLWRLLWLLAAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDtdlsieqntgeirtkvpldretrssyslvaiplsgenvrvvsfyepgeirtkvpldretrSSYSlvaiplsgenVRVVVRVIDENdnaptfpspfmsiefpentprDVKRTlnaakdrdlgiyntqrynivsgntnNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEysinrrqsdkdglfnidSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLrentddhpswFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNISEHSFK
Low Complexity Region (SEG)
MrlwrllwllaaVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNISEHSFK
Disordered region (IsUnstruct)
**LWRLLWLLAAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSI*******************SYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDEN******************************KDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA******************GLFNIDSKSGLIFVNKALDF**************************TSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNI******
Disordered Region (DISOPRED)
MRLWRLLWLLAAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVP******DLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHR***GVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFN*S*****
Disordered Region (DISEMBL)
MRLWRLLWLLAAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNISEHSFK
Disordered Region (DISPRO)
MRLWRLLWLLAAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNI******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLWRLLWLLAAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNISEHSFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	483	2.2.26 [Sep-21-2011]
Q24292	3503	Protein dachsous OS=Droso	yes	N/A	0.877	0.121	0.505	1e-122
Q96JQ0	3298	Protocadherin-16 OS=Homo	yes	N/A	0.859	0.125	0.355	7e-68
Q2PZL6	4981	Protocadherin Fat 4 OS=Mu	no	N/A	0.857	0.083	0.323	4e-47
Q5DRA7	923	Protocadherin gamma-B5 OS	no	N/A	0.739	0.386	0.342	2e-46
Q9Y5G0	923	Protocadherin gamma-B5 OS	no	N/A	0.739	0.386	0.342	3e-46
Q6V0I7	4981	Protocadherin Fat 4 OS=Ho	no	N/A	0.780	0.075	0.331	2e-45
P33450	5147	Cadherin-related tumor su	no	N/A	0.732	0.068	0.334	2e-45
Q9Y5G9	931	Protocadherin gamma-A4 OS	no	N/A	0.703	0.365	0.323	8e-43
Q5DRB6	931	Protocadherin gamma-A4 OS	no	N/A	0.703	0.365	0.320	2e-42
Q9UN70	934	Protocadherin gamma-C3 OS	no	N/A	0.763	0.395	0.326	2e-42

>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3

 Score =  440 bits (1132), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/497 (50%), Positives = 307/497 (61%), Gaps = 73/497 (14%)

Query: 11  AAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTG 70
           AA    E  R LE+ EGV V  ++G+IGD    DSGPPY+IV   G  V+TDL+I++ TG
Sbjct: 20  AASHDQERERKLEVFEGVAVDYQIGYIGDFGGIDSGPPYIIVAEAG--VETDLAIDRATG 77

Query: 71  EIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPL 130
           EI                                     RTKV LDRETR+SYSLVAIPL
Sbjct: 78  EI-------------------------------------RTKVKLDRETRASYSLVAIPL 100

Query: 131 SGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNI 190
           SG N+RV+V V DENDNAPTFP   M IEFPENTPR+VKRTL  A+D DL  YNTQRYNI
Sbjct: 101 SGRNIRVLVTVKDENDNAPTFPQTSMHIEFPENTPREVKRTLLPARDLDLEPYNTQRYNI 160

Query: 191 VSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVN 250
           VSGN N+AFRLSSHRE+DGVLYLDLQI+G LDRET P YSL+IEALDGG+PPLRG M VN
Sbjct: 161 VSGNVNDAFRLSSHRERDGVLYLDLQISGFLDRETTPGYSLLIEALDGGTPPLRGFMTVN 220

Query: 251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD 310
           +TIQDVNDNQPIFNQSRYFATVPENATVGTS+ QV+A+D DA  NG VEY+INRRQSDK+
Sbjct: 221 ITIQDVNDNQPIFNQSRYFATVPENATVGTSVLQVYASDTDADENGLVEYAINRRQSDKE 280

Query: 311 GLFNIDSKSGLIFVNKALDFETKEVHDLV------PRFAVEISSF--------------- 349
            +F ID ++G I++NKALDFETKE+H+LV          +E ++F               
Sbjct: 281 QMFRIDPRTGAIYINKALDFETKELHELVVVAKDHGEQPLETTAFVSIRVTDVNDNQPTI 340

Query: 350 -------------DEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKS 396
                         E A+PG  V +IS  D D               D H +    D+  
Sbjct: 341 NVIFLSDDASPKISESAQPGEFVARISVHDPDSKTEYANVNVTLNGGDGHFALTTRDNSI 400

Query: 397 GLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTI 456
            L+ +   +D E      L+V+ATD G P L +S ++ + I DVNDN P F+Q  Y+  +
Sbjct: 401 YLVIVHLPLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQDLYHANV 460

Query: 457 PENKPKGSCILKSIFYD 473
            E    G+ +L+ + +D
Sbjct: 461 MEVADPGTSVLQVLAHD 477

Involved in morphogenesis. May also be involved in cell adhesion.
Drosophila melanogaster (taxid: 7227)

>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2 SV=1

 Score =  258 bits (659), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 174/490 (35%), Positives = 234/490 (47%), Gaps = 75/490 (15%)

Query: 21  DLEISEGVPVGTRVGFIGDGFVGDSGPP--YLIVPVPGSAVDTDLSIEQNTGEIRTKVPL 78
           DL+I E  P GT +G I  G    +  P  Y I    GS V TDL+I++++G +RT    
Sbjct: 48  DLQIDEEQPAGTLIGDISAGLPAGTAAPLMYFISAQEGSGVGTDLAIDEHSGVVRT---- 103

Query: 79  DRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVV 138
                               RV              LDRE R  Y   A+   G  V V 
Sbjct: 104 -------------------ARV--------------LDREQRDRYRFTAVTPDGATVEVT 130

Query: 139 VRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNA 198
           VRV D ND+AP FP    +++ PE+T    +  L  A+D D G   TQ Y +        
Sbjct: 131 VRVADINDHAPAFPQARAALQVPEHTAFGTRYPLEPARDADAGRLGTQGYALSGDGAGET 190

Query: 199 FRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVND 258
           FRL +    DG    +L + G LDRE    Y L +EA DGGSPP R   +++VT+ D+ND
Sbjct: 191 FRLETRPGPDGTPVPELVVTGELDRENRSHYMLQLEAYDGGSPPRRAQALLDVTLLDIND 250

Query: 259 NQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSK 318
           + P FNQSRY A V E+   G+ + QVFA+DADAG NG V Y INRRQS+ DG F+ID+ 
Sbjct: 251 HAPAFNQSRYHAVVSESLAPGSPVLQVFASDADAGVNGAVTYEINRRQSEGDGPFSIDAH 310

Query: 319 SGLIFVNKALDFETKEVHDLV----------------------------PRFAVEISSFD 350
           +GL+ + + LDFE + VH+LV                            P   V   S D
Sbjct: 311 TGLLQLERPLDFEQRRVHELVVQARDGGAHPELGSAFVTVHVRDANDNQPSMTVIFLSAD 370

Query: 351 ------EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSN 404
                 E A PG  V +IS  D D+G  + +  SL E  + H +    DS   L+ +   
Sbjct: 371 GSPQVSEAAPPGQLVARISVSDPDDGDFAHVNVSL-EGGEGHFALSTQDSVIYLVCVARR 429

Query: 405 VDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNV-TIPENKPKG 463
           +D E      L V ATD+G P L + A  ++ + DVNDN P FD+  Y    +PE    G
Sbjct: 430 LDREERDAYNLRVTATDSGSPPLRAEAAFVLHVTDVNDNAPAFDRQLYRPEPLPEVALPG 489

Query: 464 SCILKSIFYD 473
           S +++    D
Sbjct: 490 SFVVRVTARD 499

Calcium-dependent cell-adhesion protein.

Homo sapiens (taxid: 9606)

>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2

 Score =  189 bits (481), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 169/522 (32%), Positives = 236/522 (45%), Gaps = 108/522 (20%)

Query: 1   MRLWRLLWLL---AAVAADEHLRDLEISEGVPVGTRVGFIGD--GFVGDSGPPYLIVPVP 55
           +R+W LL LL   A V A E  +  ++ E  P GT VG I    GF       Y +    
Sbjct: 25  LRVWGLLSLLPGSARVQAAEQRQVFQVMEEQPPGTLVGTIPTRPGFT------YRL---- 74

Query: 56  GSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPL 115
            S      +I  +TG + T   +DRE+        +P    N+ V+S             
Sbjct: 75  -SESHALFAINSSTGALYTTATIDRES--------LPSDVVNLVVLS------------- 112

Query: 116 DRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAA 175
                      + P     VRV+VR  D NDNAP FP P + + F E++    +  L+ A
Sbjct: 113 -----------SSPTYPTEVRVLVR--DLNDNAPVFPDPSIVVTFKEDSGSGRQVILDTA 159

Query: 176 KDRDLGI--YNTQRYNIVSGNTNNAFRLSSHREKDGV-LYLDLQINGVLDRETIPEYSLV 232
            D D+G    +   Y IVSGN    FRL       G   +L L   G LDRE  P+Y L+
Sbjct: 160 TDSDIGSNGVDHHSYRIVSGNEAGRFRLDITLNPSGEGAFLHLVSKGGLDREVTPQYQLL 219

Query: 233 IEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA 292
           +E  D G P  RG + VNVT+QD+NDN P+F  S Y A VPE+A VG+S+ QV A DAD 
Sbjct: 220 VEVEDKGEPKRRGYLQVNVTVQDINDNPPVFGSSHYQAGVPEDAVVGSSVLQVAAADADE 279

Query: 293 GSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDL--------VPRFAV 344
           G+N ++ Y    R  D+   F +D ++GLI V + LDFE +  + L        VP    
Sbjct: 280 GTNADIRY----RLQDEGTPFQMDPETGLITVREPLDFEARRQYSLTVQATDRGVPSLTG 335

Query: 345 EISSF---------------------------DEIAEPGTSVFQISAFDQDE-GINSVIT 376
              +F                           DE A+ GT V  ++  D D    N  I+
Sbjct: 336 RAEAFIQLLDVNDNDPVVKFRYFPATSRYASVDENAQVGTVVALLTVTDADSPAANGNIS 395

Query: 377 YS-LRENTDDHPSWFQIDSKS----GLITMKSNVDCETDPVPKLTVIATDN-GVP----- 425
              L  N   H   F++         LI + S +D E  P   LTV  +DN G P     
Sbjct: 396 VQILGGNEQRH---FEVQRSKVPNLSLIKVASALDRERIPSYNLTVSVSDNSGAPPTAEV 452

Query: 426 -ALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCI 466
            A SS A++++ ++D+ND+ P+F+Q  Y V + E  P GS +
Sbjct: 453 QARSSVASLVIFVNDINDHPPVFEQQVYRVNLSEEVPPGSYV 494

May function in the regulation of planar cell polarity. Cadherins are cell-cell interaction molecules.

Mus musculus (taxid: 10090)

>sp|Q5DRA7|PCDGH_PANTR Protocadherin gamma-B5 OS=Pan troglodytes GN=PCDHGB5 PE=3 SV=1

 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/409 (34%), Positives = 199/409 (48%), Gaps = 52/409 (12%)

Query: 105 EPGEIRTKVPLDRET---RSSYSLVAIPLSGEN----VRVVVRVIDENDNAPTFPSPFMS 157
           E GE+     LDRE    +     +      EN      V V + D ND+ P F      
Sbjct: 80  ESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFE 139

Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQI 217
           ++  E+     +  L  A+D D+G+ + Q+Y +   + N +F L    ++DG  Y +L +
Sbjct: 140 LQISESAQPGTRFILEVAEDADIGLNSLQKYKL---SLNPSFSLIIKEKQDGSKYPELAL 196

Query: 218 NGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENAT 277
              LDRE    + LV+ ALDGG+PPL G+  + + + D NDN P+FN+  Y  ++ EN  
Sbjct: 197 EKTLDREQQSYHRLVLTALDGGNPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVP 256

Query: 278 VGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDF-ETKEVH 336
            GT++ QV ATD D G N E+ YS  R       +F+++SKSG I   K LDF ETKE  
Sbjct: 257 PGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGEITTQKKLDFEETKEYS 312

Query: 337 ---------DLVPRFAVEISSFD------------------EIAEPGTSVFQISAFDQDE 369
                     LV +  VEI+  D                  E A PGT +  I   DQD 
Sbjct: 313 MVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDS 372

Query: 370 GINSVITYSLRENTDDHPSWFQIDSKS----GLITMKSNVDCETDPVPKLTVIATDNGVP 425
           G N  +   L+         F+I S S     L+T    +D E  P   +T+ ATD G P
Sbjct: 373 GENGEVNCQLQGEVP-----FKIISSSKNSYKLVT-DGTLDREQTPEYNVTITATDRGKP 426

Query: 426 ALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDI 474
            LSSS +V++ I DVNDN P+F Q+ Y V++PEN P G+ I +    D+
Sbjct: 427 PLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDL 475

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Pan troglodytes (taxid: 9598)

>sp|Q9Y5G0|PCDGH_HUMAN Protocadherin gamma-B5 OS=Homo sapiens GN=PCDHGB5 PE=2 SV=1

 Score =  186 bits (473), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/409 (34%), Positives = 198/409 (48%), Gaps = 52/409 (12%)

Query: 105 EPGEIRTKVPLDRET---RSSYSLVAIPLSGEN----VRVVVRVIDENDNAPTFPSPFMS 157
           E GE+     LDRE    +     +      EN      V V + D ND+ P F      
Sbjct: 80  ESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFE 139

Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQI 217
           ++  E+     +  L  A+D D+G+ + Q+Y +   + N +F L    ++DG  Y +L +
Sbjct: 140 LQISESAQPGTRFILEVAEDADIGLNSLQKYKL---SLNPSFSLIIKEKQDGSKYPELAL 196

Query: 218 NGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENAT 277
              LDRE    + LV+ ALDGG PPL G+  + + + D NDN P+FN+  Y  ++ EN  
Sbjct: 197 EKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVP 256

Query: 278 VGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDF-ETKEVH 336
            GT++ QV ATD D G N E+ YS  R       +F+++SKSG I   K LDF ETKE  
Sbjct: 257 PGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGEITTQKKLDFEETKEYS 312

Query: 337 ---------DLVPRFAVEISSFD------------------EIAEPGTSVFQISAFDQDE 369
                     LV +  VEI+  D                  E A PGT +  I   DQD 
Sbjct: 313 MVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDS 372

Query: 370 GINSVITYSLRENTDDHPSWFQIDSKS----GLITMKSNVDCETDPVPKLTVIATDNGVP 425
           G N  +   L+         F+I S S     L+T    +D E  P   +T+ ATD G P
Sbjct: 373 GENGEVNCQLQGEVP-----FKIISSSKNSYKLVT-DGTLDREQTPEYNVTITATDRGKP 426

Query: 426 ALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDI 474
            LSSS +V++ I DVNDN P+F Q+ Y V++PEN P G+ I +    D+
Sbjct: 427 PLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDL 475

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Homo sapiens (taxid: 9606)

>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2

 Score =  184 bits (466), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 211/453 (46%), Gaps = 76/453 (16%)

Query: 70  GEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSS-----YS 124
           G I+T+         S++L AI  S            G + T   +DRE+  S       
Sbjct: 62  GTIQTRPGFTYRLSESHALFAINSS-----------TGALYTTSTIDRESLPSDVINLVV 110

Query: 125 LVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGI-- 182
           L + P     VRV+VR  D NDNAP FP P + + F E++    +  L+ A D D+G   
Sbjct: 111 LSSAPTYPTEVRVLVR--DLNDNAPVFPDPSIVVTFKEDSSSGRQVILDTATDSDIGSNG 168

Query: 183 YNTQRYNIVSGNTNNAFRLSSHREKDGV-LYLDLQINGVLDRETIPEYSLVIEALDGGSP 241
            + + Y I+ GN    FRL       G   +L L   G LDRE  P+Y L++E  D G P
Sbjct: 169 VDHRSYRIIRGNEAGRFRLDITLNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEP 228

Query: 242 PLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYS 301
             RG + VNVT+QD+NDN P+F  S Y A VPE+A VG+S+ QV A DAD G+N ++ Y 
Sbjct: 229 KRRGYLQVNVTVQDINDNPPVFGSSHYQAGVPEDAVVGSSVLQVAAADADEGTNADIRY- 287

Query: 302 INRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDL--------VPRF----------- 342
              R  D+   F +D ++GLI V + LDFE +  + L        VP             
Sbjct: 288 ---RLQDEGTPFQMDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLL 344

Query: 343 ----------------AVEISSFDEIAEPGTSVFQISAFDQDE-GINSVITYS-LRENTD 384
                               +S DE A+ GT V  ++  D D    N  I+   L  N  
Sbjct: 345 DVNDNDPVVKFRYFPATSRYASVDENAQVGTVVALLTVTDADSPAANGNISVQILGGNEQ 404

Query: 385 DHPSWFQIDSKS----GLITMKSNVDCETDPVPKLTVIATDN-------GVPALSSSATV 433
            H   F++ S       LI + S +D E  P   LTV  +DN        V A SS A++
Sbjct: 405 RH---FEVQSSKVPNLSLIKVASALDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASL 461

Query: 434 LVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCI 466
           ++ ++D+ND+ P+F Q  Y V + E  P GS +
Sbjct: 462 VIFVNDINDHPPVFSQQVYRVNLSEEAPPGSYV 494

May function in the regulation of planar cell polarity (By similarity). Cadherins are cell-cell interaction molecules.

Homo sapiens (taxid: 9606)

>sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila melanogaster GN=ft PE=1 SV=3

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/410 (33%), Positives = 210/410 (51%), Gaps = 56/410 (13%)

Query: 107 GEIRTKVPLDRE-TRSSYSLVAIPLSGEN---VRVVVRVIDENDNAPTFPSPFMSIEFPE 162
           GE++T V LDRE  R  Y LV   LS +    + V ++V+D NDN+P FP P ++I F E
Sbjct: 110 GEVKTNVVLDREGMRDHYDLVV--LSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSE 167

Query: 163 NTPRDVKRTLNAAKDRDLGIYN-TQRYNIVSGNTNNAFRLSSHREKDG-VLYLDLQINGV 220
           +     +  L+AA D D+G    T +Y IV+GN +N FRL +     G   YL L+  G 
Sbjct: 168 SATSGTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETTGN 227

Query: 221 LDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGT 280
           LDRE+   Y L I A DGGSPP  G + VNVTI DVNDN PIF+ S Y  ++ E A  GT
Sbjct: 228 LDRESRGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGT 287

Query: 281 SIFQVFATDADAGSNGEVEY------------------------------SINRRQSDKD 310
            +  V A+D D G N ++ Y                              ++    S K 
Sbjct: 288 PVVTVMASDNDLGDNSKITYYLAETEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKS 347

Query: 311 GLFNIDSK-------SGLIFVNKALDFETKEVHDLVPRFAV-----EISSFDEIAEPGTS 358
            +F + ++        G  +V   L  +T + HD +  F       ++++ DE A  GT 
Sbjct: 348 CVFTVFARDHGSPRQDGRTYVTVNL-LDTND-HDPIISFRFFPDGGKVATVDENAVNGTV 405

Query: 359 VFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPK--LT 416
           V  ++  D D G+N     S+R  + +    F+++  + L  ++ N   + + + K  LT
Sbjct: 406 VAAVAVKDSDSGLNGRT--SVRIVSGNELGHFRLEEAADLHIVRVNGVLDREEIGKYNLT 463

Query: 417 VIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCI 466
           V+A D G PA +++A +++ ++DVND+EP+F++S Y+  + E  P GS +
Sbjct: 464 VVAMDQGTPARTTTAHLIIDVNDVNDHEPVFEKSEYSAVLSELAPTGSFV 513

Could function as a cell-adhesion protein. Acts as a tumor suppressor. Required for correct morphogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q9Y5G9|PCDG4_HUMAN Protocadherin gamma-A4 OS=Homo sapiens GN=PCDHGA4 PE=2 SV=1

 Score =  175 bits (443), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 187/390 (47%), Gaps = 50/390 (12%)

Query: 135 VRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGN 194
           +RV V +ID NDN P+F +    I+  EN     +  L  A D D+G+ + Q Y +   N
Sbjct: 117 LRVEVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQL---N 173

Query: 195 TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQ 254
           +N  F L      DG+ Y +L +   LDRE    + LV+ A DGG P   G+  + + + 
Sbjct: 174 SNGYFSLDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILV 233

Query: 255 DVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFN 314
           D NDN P+F Q  Y  +V EN  VGT +  V ATD D G+NG+V YS  + +     LF 
Sbjct: 234 DTNDNAPVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQ 293

Query: 315 IDSKSGLIFVNKALDFETK-------EVHD---LVPRFAVEI------------------ 346
           ++S SG I +   LD+E         E HD   L  R  V +                  
Sbjct: 294 LNSLSGDITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLT 353

Query: 347 SSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSG----LITMK 402
           SS  E + PGT +   +  D D G N ++T S+ +N       F ++   G    L+T +
Sbjct: 354 SSVQESSSPGTVIALFNVHDSDSGGNGLVTCSIPDNLP-----FTLEKTYGNYYRLLTHR 408

Query: 403 SNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPK 462
           + +D E      +TV ATD G P LS+   + + + D+NDN P F  + Y+  IPEN P+
Sbjct: 409 T-LDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPR 467

Query: 463 GSCILKSIFYD---------IFNISEHSFK 483
           G+ IL     D          ++++E +F+
Sbjct: 468 GASILSMTAQDPDSGDNARITYSLAEDTFQ 497

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Homo sapiens (taxid: 9606)

>sp|Q5DRB6|PCDG4_PANTR Protocadherin gamma-A4 OS=Pan troglodytes GN=PCDHGA4 PE=3 SV=1

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 187/390 (47%), Gaps = 50/390 (12%)

Query: 135 VRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGN 194
           +RV V +ID NDN P+F +    I+  EN     +  L  A D D+G+ + Q Y +   N
Sbjct: 117 LRVEVEIIDVNDNPPSFGTEQREIKVAENENPGTRFPLPEAFDPDVGVNSLQGYQL---N 173

Query: 195 TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQ 254
           +N  F L      DG+ Y +L +   LDRE    + LV+ A DGG P   G+  + + + 
Sbjct: 174 SNGYFSLDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILV 233

Query: 255 DVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFN 314
           D NDN P+F Q  Y  +V EN  VGT +  V ATD D G+NG+V YS  + +     LF 
Sbjct: 234 DTNDNAPVFTQPEYHVSVHENVPVGTLLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQ 293

Query: 315 IDSKSGLIFVNKALDFETK-------EVHD---LVPRFAVEI------------------ 346
           ++S SG I +   LD+E         E HD   L  R  V +                  
Sbjct: 294 LNSLSGDITILGDLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLT 353

Query: 347 SSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSG----LITMK 402
           SS  E + PGT +   +  D D G N ++T S+ +N       F ++   G    L+T +
Sbjct: 354 SSVQETSSPGTVIALFNVHDSDSGGNGLVTCSIPDNLP-----FTLEKTYGNYYRLLTHR 408

Query: 403 SNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPK 462
           + +D E      +TV ATD G P LS+   + + + D+NDN P F  + Y+  +PEN P+
Sbjct: 409 T-LDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYVPENNPR 467

Query: 463 GSCILKSIFYD---------IFNISEHSFK 483
           G+ IL     D          ++++E +F+
Sbjct: 468 GASILSMTAQDPDSGDNARITYSLAEDTFQ 497

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Pan troglodytes (taxid: 9598)

>sp|Q9UN70|PCDGK_HUMAN Protocadherin gamma-C3 OS=Homo sapiens GN=PCDHGC3 PE=1 SV=1

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 205/435 (47%), Gaps = 66/435 (15%)

Query: 93  LSGENVRVVS-----FYE----PGEIRTKVPLDRE---------TRSSYSLVAIPLSGEN 134
           LS    RVVS     F+E     GE+     LDRE         T +   +V  PL   +
Sbjct: 61  LSARRFRVVSGASRRFFEVNRETGEMFVNDRLDREELCGTLPSCTVTLELVVENPLELFS 120

Query: 135 VRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGN 194
           V VV++  D NDN P FP+  M +E  E      +  L +A D D+G  + Q Y +   +
Sbjct: 121 VEVVIQ--DINDNNPAFPTQEMKLEISEAVAPGTRFPLESAHDPDVGSNSLQTYEL---S 175

Query: 195 TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQ 254
            N  F L     +D   Y +L +   LDRE  P   LV+ ALDGG+P L  S+ +++ + 
Sbjct: 176 RNEYFALRVQTREDSTKYAELVLERALDREREPSLQLVLTALDGGTPALSASLPIHIKVL 235

Query: 255 DVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSI-NRRQSDKDGLF 313
           D NDN P+FNQS Y A V E+A  GT + QV ATD D G NGE+ YS  +  ++    LF
Sbjct: 236 DANDNAPVFNQSLYRARVLEDAPSGTRVVQVLATDLDEGPNGEIIYSFGSHNRAGVRQLF 295

Query: 314 NIDSKSGLIFVNKALDFETKEVHDLV--------------PRFAVEI------------- 346
            +D  +G++ +   LDFE  ++H++                +  VE+             
Sbjct: 296 ALDLVTGMLTIKGRLDFEDTKLHEIYIQAKDKGANPEGAHCKVLVEVVDVNDNAPEITVT 355

Query: 347 ---SSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGL---IT 400
              S   E A  GT +  +S  D D G N ++T  +       P        S L    T
Sbjct: 356 SVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEV-------PPGLPFSLTSSLKNYFT 408

Query: 401 MKSNVDCETDPVPK--LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPE 458
           +K++ D + + VP+  L++ A D G P+LS+   V V + D+NDN P   QS Y+V I E
Sbjct: 409 LKTSADLDRETVPEYNLSITARDAGTPSLSALTIVRVQVSDINDNPPQSSQSSYDVYIEE 468

Query: 459 NKPKGSCILKSIFYD 473
           N   G+ IL    +D
Sbjct: 469 NNLPGAPILNLSVWD 483

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	483
157108475	605	protocadherin [Aedes aegypti] gi|1088840	0.884	0.705	0.526	1e-136
312384516	741	hypothetical protein AND_02014 [Anophele	0.886	0.577	0.525	1e-135
270006362	3474	dachsous [Tribolium castaneum]	0.863	0.120	0.556	1e-135
170031841	955	protocadherin [Culex quinquefasciatus] g	0.894	0.452	0.524	1e-135
328701666	3383	PREDICTED: protein dachsous-like [Acyrth	0.900	0.128	0.544	1e-133
195388388	3639	GJ19658 [Drosophila virilis] gi|19414931	0.890	0.118	0.500	1e-124
198475184	3586	GA26057 [Drosophila pseudoobscura pseudo	0.877	0.118	0.515	1e-124
195159445	1812	GL15349 [Drosophila persimilis] gi|19411	0.877	0.233	0.515	1e-123
158297319	361	AGAP007909-PA [Anopheles gambiae str. PE	0.633	0.847	0.631	1e-122
195470324	3556	GE15963 [Drosophila yakuba] gi|194173559	0.877	0.119	0.507	1e-121

>gi|157108475|ref|XP_001650242.1| protocadherin [Aedes aegypti] gi|108884002|gb|EAT48227.1| AAEL000717-PA [Aedes aegypti]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 277/526 (52%), Positives = 332/526 (63%), Gaps = 99/526 (18%)

Query: 2   RLWRLLWLLAAVAA---------------------DEHLRDLEISEGVPVGTRVGFIGDG 40
           R   LLWLL  + A                      EH+R+LE+SEGVP+G ++GFIG+ 
Sbjct: 10  RKMSLLWLLLMICAFAGDSGGGSDGGGLGFLRLARAEHVRELEVSEGVPIGHQIGFIGEF 69

Query: 41  FVG-DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVR 99
             G DSGPPYLIVPVPGSAVDTDL+I+  TG                             
Sbjct: 70  LHGVDSGPPYLIVPVPGSAVDTDLAIDHTTG----------------------------- 100

Query: 100 VVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
                   EIRTKV LDRE R+SYSLVAIPLSGENVRVV+RV+DENDNAPTFP+  M+IE
Sbjct: 101 --------EIRTKVLLDREKRASYSLVAIPLSGENVRVVIRVLDENDNAPTFPTALMNIE 152

Query: 160 FPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQING 219
           FPENTPRDVKRTLN A+D DLG YNTQRYNIVSGN NNAFRLSSHRE+DGVLYLDLQING
Sbjct: 153 FPENTPRDVKRTLNPARDLDLGRYNTQRYNIVSGNVNNAFRLSSHRERDGVLYLDLQING 212

Query: 220 VLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVG 279
            LDRET P YSLV+EALDGG+PPLRG M VN+TIQDVNDNQPIFNQSRYFATVPENAT+G
Sbjct: 213 FLDRETTPAYSLVVEALDGGNPPLRGQMTVNITIQDVNDNQPIFNQSRYFATVPENATIG 272

Query: 280 TSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
           T++ QV+ATD DAG NG VEY+INRRQSDKD +F ID  +GLI VNK LDFETKE+H+LV
Sbjct: 273 TTVLQVYATDQDAGENGMVEYAINRRQSDKDQMFRIDPNTGLISVNKPLDFETKELHELV 332

Query: 340 PRFA------VEISSF----------------------------DEIAEPGTSVFQISAF 365
                     +E ++F                             E A+PG  V +IS  
Sbjct: 333 VVAKDRGLQPLETTAFVSIRVTDVNDNQPIINVIFLSDDATPKISESAQPGEFVARISVN 392

Query: 366 DQD---EGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDN 422
           D D   E  N  +T S  E    H      D+   L+ +   +D E  P   L+V+ATD 
Sbjct: 393 DPDSKTEYSNVNVTLSGGEG---HFGLTTRDNIIYLVIVSLPLDREIKPNYTLSVVATDT 449

Query: 423 GVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
           G P L ++ T+ +T+ D+NDN P F++  Y+  + E    G+ +++
Sbjct: 450 GNPPLHAAKTIFLTVTDINDNAPEFEKEIYHANVMEVADPGTSVIQ 495

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384516|gb|EFR29227.1| hypothetical protein AND_02014 [Anopheles darlingi]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 277/527 (52%), Positives = 331/527 (62%), Gaps = 99/527 (18%)

Query: 6   LLWLLAAVAA----------------DEHLRDLEISEGVPVGTRVGFIGDGF------VG 43
           LLWLL  + A                 EH+R+LE+SEGVPVG  +GFIG+          
Sbjct: 3   LLWLLLMICAFSGDSGGGGGPGAGVAAEHVRELEVSEGVPVGHHIGFIGEFLQDDVVAAA 62

Query: 44  DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSF 103
           DSGPPYLIVPVPGSAVDTDL+I+  TG                                 
Sbjct: 63  DSGPPYLIVPVPGSAVDTDLAIDHTTG--------------------------------- 89

Query: 104 YEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPEN 163
               EIRTKVPLDRE RSSYSLVAIPLSGENVRVVVRV+DENDNAPTFP+P M+IEFPEN
Sbjct: 90  ----EIRTKVPLDRENRSSYSLVAIPLSGENVRVVVRVLDENDNAPTFPTPLMNIEFPEN 145

Query: 164 TPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDR 223
           TPRDVKRTL+ A+D DLG YNTQRY+IVSGN NNAFRLSSHRE+DGVLYLDLQING LDR
Sbjct: 146 TPRDVKRTLHPARDADLGRYNTQRYSIVSGNVNNAFRLSSHRERDGVLYLDLQINGFLDR 205

Query: 224 ETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIF 283
           ET P YSL++EALDGGSPPLRG M VN+TIQDVNDNQPIFNQSRYFATVPENAT+GT++ 
Sbjct: 206 ETTPAYSLLVEALDGGSPPLRGLMTVNITIQDVNDNQPIFNQSRYFATVPENATLGTTVL 265

Query: 284 QVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV---- 339
           QV+ATD DAG NG VEY+INRRQSDK+ +F ID  +GLI VNK LDFET+E+H+LV    
Sbjct: 266 QVYATDQDAGENGLVEYAINRRQSDKEQMFRIDPATGLISVNKPLDFETRELHELVVVAK 325

Query: 340 --PRFAVEISSF----------------------------DEIAEPGTSVFQISAFDQD- 368
                 +E ++F                             E A+PG  V +IS  D D 
Sbjct: 326 DRGMQPLETTAFVSIRVTDVNDNQPIINVIFLSDDATPKISESAQPGEFVARISVNDPDS 385

Query: 369 --EGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPA 426
             E  N  +T S  E    H      D+   L+ +   +D E  P   L+VIATD G P 
Sbjct: 386 RTEYSNVNVTLSGGEG---HFGLTTRDNIIYLVIVSLPLDREIKPNYTLSVIATDTGNPP 442

Query: 427 LSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
           L ++  + +T+ D+NDN P F++  Y   + E    G+ +++ +  D
Sbjct: 443 LHAAKDIFLTVTDINDNAPEFERDEYQANVMEVADPGTSVVQVMAID 489

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006362|gb|EFA02810.1| dachsous [Tribolium castaneum]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 274/492 (55%), Positives = 321/492 (65%), Gaps = 75/492 (15%)

Query: 17  EHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKV 76
           EH+RDLE+SEG PVGTR+GFIGDG   DSGPPYLIVPV GSAVD+DL+I+Q TGEI    
Sbjct: 18  EHVRDLEVSEGAPVGTRIGFIGDG-ASDSGPPYLIVPV-GSAVDSDLNIDQTTGEI---- 71

Query: 77  PLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVR 136
                                            RTKVPLDRETRSSYSLVAIP+ G+NV+
Sbjct: 72  ---------------------------------RTKVPLDRETRSSYSLVAIPIRGDNVK 98

Query: 137 VVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTN 196
           VVV+V+DENDNAPTFP+  MSIEFPENTPRDVKRTL+ A+D DL I+NTQRYNIVSGN N
Sbjct: 99  VVVKVLDENDNAPTFPTSVMSIEFPENTPRDVKRTLHPARDLDLDIFNTQRYNIVSGNIN 158

Query: 197 NAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDV 256
           N FRLSSHRE+DGVLYLDLQING LDRET P YSLVIEALDGG+PPLRG M VN+TIQDV
Sbjct: 159 NTFRLSSHRERDGVLYLDLQINGFLDRETTPAYSLVIEALDGGTPPLRGEMRVNITIQDV 218

Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNID 316
           NDNQPIFNQSRY ATVPENATVGT++ QVFATD D+G NG++EYSINRRQSD+D +F ID
Sbjct: 219 NDNQPIFNQSRYIATVPENATVGTTVLQVFATDKDSGENGQIEYSINRRQSDRDNMFRID 278

Query: 317 SKSGLIFVNKALDFETKEVHDLV----------------------------PRFAVEISS 348
             +GLI VNK LDFETKE+H+LV                            P   V   S
Sbjct: 279 PTTGLIVVNKPLDFETKELHELVIVAKDHGLQPLETTAFVSIRVTDVNDNQPTINVIFLS 338

Query: 349 FD------EIAEPGTSVFQISAFDQDEGIN-SVITYSLRENTDDHPSWFQIDSKSGLITM 401
            D      E A+PG  V +IS  D D     S I  +L    D H      D+   L+ +
Sbjct: 339 DDATPKISESAQPGEFVARISVNDPDSKTEYSNINVTL-SGGDGHFGLTTRDNIIYLVIV 397

Query: 402 KSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKP 461
              +D E  P   L V+ATD G P L +S T+ + + D+NDN P FDQ  Y   + E   
Sbjct: 398 SLPLDRELQPNYTLDVVATDRGNPPLHASRTINLMVTDINDNAPEFDQEVYQANVMEVSD 457

Query: 462 KGSCILKSIFYD 473
            G+ +++ +  D
Sbjct: 458 PGTSVIQVLATD 469

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170031841|ref|XP_001843792.1| protocadherin [Culex quinquefasciatus] gi|167871191|gb|EDS34574.1| protocadherin [Culex quinquefasciatus]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/526 (52%), Positives = 331/526 (62%), Gaps = 94/526 (17%)

Query: 2   RLWRLLWLLAAVAA----------------DEHLRDLEISEGVPVGTRVGFIGDGFVG-D 44
           R   LLWLL  + A                 EH+R+LE+SEGV +G ++GFIG+   G D
Sbjct: 236 RKMSLLWLLLMICAFTGDRGGGGGGIRLVRGEHVRELEVSEGVQIGHQIGFIGEFLHGVD 295

Query: 45  SGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFY 104
           SGPPYLIVPVPGSAVDTDL+I+  TG                                  
Sbjct: 296 SGPPYLIVPVPGSAVDTDLAIDHTTG---------------------------------- 321

Query: 105 EPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENT 164
              EIRTKV LDRE R+SYSLVAIPLSGENVRVV+RV+DENDNAPTFP+  M+IEFPENT
Sbjct: 322 ---EIRTKVALDREKRASYSLVAIPLSGENVRVVIRVLDENDNAPTFPTALMNIEFPENT 378

Query: 165 PRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRE 224
           PRDVKRTLN A+D DLG YNTQRYNIVSGN NNAFRLSSHRE+DGVLYLDLQING LDRE
Sbjct: 379 PRDVKRTLNPARDLDLGRYNTQRYNIVSGNVNNAFRLSSHRERDGVLYLDLQINGFLDRE 438

Query: 225 TIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQ 284
           T P YSLV+EALDGG+PPLRG M VN+TIQDVNDNQPIFNQSRYFATVPENAT+GT++ Q
Sbjct: 439 TTPAYSLVVEALDGGNPPLRGLMTVNITIQDVNDNQPIFNQSRYFATVPENATIGTTVLQ 498

Query: 285 VFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFA- 343
           V+ATD DA  NG VEY+INRRQSDKD +F ID  +GLI VNK LDFETKE+H+LV     
Sbjct: 499 VYATDQDATENGMVEYAINRRQSDKDQMFRIDPLTGLISVNKPLDFETKELHELVVVAKD 558

Query: 344 -----VEISSF----------------------------DEIAEPGTSVFQISAFDQD-- 368
                +E ++F                             E A+PG  V +IS  D D  
Sbjct: 559 RGLQPLETTAFVSIRVTDVNDNQPIINVIFLSDDATPKISESAQPGEFVARISVNDPDSK 618

Query: 369 -EGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPAL 427
            E  N  +T S  E    H      D+   L+ +   +D E  P   L+V+ATD G P L
Sbjct: 619 TEYSNVNVTLSGGEG---HFGLTTRDNIIYLVIVSLPLDREIKPNYTLSVVATDTGNPPL 675

Query: 428 SSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
            ++ T+ +T+ D+NDN P F++  Y+  + E    G+ +++    D
Sbjct: 676 HAAKTIFLTVTDINDNAPEFEKEIYHANVMEVADPGTSVIQVTAID 721

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701666|ref|XP_003241675.1| PREDICTED: protein dachsous-like [Acyrthosiphon pisum]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 277/509 (54%), Positives = 318/509 (62%), Gaps = 74/509 (14%)

Query: 1   MRLWRLLWLLAAVA--ADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSA 58
           M L R L LLAAVA  A EH R L++SE  PVGTR+GFIGDG   DSGPPYLIVPVPGSA
Sbjct: 1   MGLPRWLCLLAAVAVVAGEHERHLDVSESAPVGTRIGFIGDG-SKDSGPPYLIVPVPGSA 59

Query: 59  VDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRE 118
           VDTDL  EQNT                                     GEIRT+VPLDRE
Sbjct: 60  VDTDLIAEQNT-------------------------------------GEIRTRVPLDRE 82

Query: 119 TRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDR 178
           TR+SY+LVAIPLSGENVRVVVRVIDENDNAPTFPSP M +EFPENTPRD KRTLN A+D 
Sbjct: 83  TRASYTLVAIPLSGENVRVVVRVIDENDNAPTFPSPSMHVEFPENTPRDTKRTLNPARDL 142

Query: 179 DLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDG 238
           DLG YNTQRY IVSGN NNAFRLSSHREKD VLYLDLQING LDRET   Y LVIEA DG
Sbjct: 143 DLGPYNTQRYAIVSGNVNNAFRLSSHREKDDVLYLDLQINGYLDRETTAAYLLVIEAYDG 202

Query: 239 GSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEV 298
           G PPL+G+M VNVT+ DVNDNQP FNQSRY+ATVPENATV TSI QV ATD D G NG V
Sbjct: 203 GLPPLKGAMTVNVTVLDVNDNQPAFNQSRYYATVPENATVSTSILQVHATDVDDGDNGVV 262

Query: 299 EYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV------------------- 339
           EYSI+RRQSDK+G F +D ++G+I VN+ LD+ET+EVH+LV                   
Sbjct: 263 EYSISRRQSDKEGYFTVDRQTGVISVNRPLDYETREVHELVVVAKDRGDQPLETTAFVTV 322

Query: 340 ---------PRFAVEISSFD------EIAEPGTSVFQISAFDQDEGINSVITYSLRENTD 384
                    P   V   S D      E A+PG  V +IS  D D            +  D
Sbjct: 323 RVADVNDNQPDINVIFLSDDATPKISERAQPGEFVARISVHDPDSKQEYSNVNVTLQGGD 382

Query: 385 DHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNE 444
            H      D+   L+ +   +D E+ P   L+VIATD G P L +S T  + + DVNDN 
Sbjct: 383 GHFGLTTQDNIIYLVIVALPLDRESRPNYTLSVIATDAGSPPLHASKTFHLLVTDVNDNR 442

Query: 445 PIFDQSFYNVTIPENKPKGSCILKSIFYD 473
           P+F    Y  ++ E    G+ + + +  D
Sbjct: 443 PVFAAPEYWASVSETAEPGTSVARVLATD 471

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388388|ref|XP_002052862.1| GJ19658 [Drosophila virilis] gi|194149319|gb|EDW65017.1| GJ19658 [Drosophila virilis]

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/519 (50%), Positives = 318/519 (61%), Gaps = 89/519 (17%)

Query: 4   WRLLWLL------------AAVAAD--EHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPY 49
           W L WLL            A  A D  +H R LE+ EGVP+G ++G+IGD    DSGPPY
Sbjct: 74  WTLFWLLLVSCSQLFGCSAAGSAGDKQQHERRLEVFEGVPIGHQIGYIGDFDSIDSGPPY 133

Query: 50  LIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEI 109
           +IV  PG  V+TDL+I+  +GEI                                     
Sbjct: 134 IIVANPG--VETDLAIDHISGEI------------------------------------- 154

Query: 110 RTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVK 169
           RTKV LDRETR+SY LVAIP+SG NVRVVV V DENDNAPTFP P M IEFPENTPR+VK
Sbjct: 155 RTKVRLDRETRASYGLVAIPMSGLNVRVVVIVRDENDNAPTFPQPAMHIEFPENTPREVK 214

Query: 170 RTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEY 229
           RTL  A+D DL  YNTQRYNIVSGN N+AFRLSSHRE+DGVLYLDLQI+G LDRET P Y
Sbjct: 215 RTLLPARDLDLEPYNTQRYNIVSGNVNDAFRLSSHRERDGVLYLDLQISGFLDRETTPAY 274

Query: 230 SLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATD 289
           SL+IEALDGG+PPLRG M VN+TIQDVNDNQPIFNQSRYFATVPENATVGTS+ QV+A+D
Sbjct: 275 SLLIEALDGGTPPLRGLMTVNITIQDVNDNQPIFNQSRYFATVPENATVGTSVLQVYASD 334

Query: 290 ADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV---------- 339
            DA  NG VEY+INRRQSDK+ +F ID+++G +++NK LDFETKE+H+LV          
Sbjct: 335 TDADENGLVEYAINRRQSDKEQMFRIDARTGAVYINKPLDFETKELHELVVVAKDHGEQP 394

Query: 340 ------------------PRFAVEISSFD------EIAEPGTSVFQISAFDQDEGINSV- 374
                             P   V   S D      E A+PG  V +IS  D D       
Sbjct: 395 LETTAFVSIRVTDVNDNQPTINVIFLSEDASPKISESAQPGEFVARISVHDPDSKTEYAN 454

Query: 375 ITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVL 434
           +  SL+   D H +    D+   L+ +   +D E      L+V+ATD G P L +S ++ 
Sbjct: 455 VNVSLK-GGDGHFALTTRDNSIYLVIVNLPLDREATSNYTLSVVATDKGTPPLHASKSIF 513

Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
           + + DVNDN P F+Q  Y+  + E    G+ +L+ +  D
Sbjct: 514 LRVTDVNDNAPEFEQDVYHANVMEVADPGTSVLQVLARD 552

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198475184|ref|XP_002132853.1| GA26057 [Drosophila pseudoobscura pseudoobscura] gi|198138709|gb|EDY70255.1| GA26057 [Drosophila pseudoobscura pseudoobscura]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/497 (51%), Positives = 311/497 (62%), Gaps = 73/497 (14%)

Query: 11  AAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTG 70
           AA +  E  R LE+ EGVPV  ++G+IGD    DSGPPY+IV   G  V+TDL+I++ TG
Sbjct: 72  AASSDKERERKLEVFEGVPVDHQIGYIGDFDGIDSGPPYIIVAEAG--VETDLAIDRTTG 129

Query: 71  EIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPL 130
           EI                                     RTKV LDRETR+SYSLVAIPL
Sbjct: 130 EI-------------------------------------RTKVRLDRETRASYSLVAIPL 152

Query: 131 SGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNI 190
           SG NVRVVV V DENDNAPTFP P M IEFPENTPR+VKRTL  A+D DL  YNTQRYNI
Sbjct: 153 SGLNVRVVVTVKDENDNAPTFPQPAMHIEFPENTPREVKRTLLPARDLDLEPYNTQRYNI 212

Query: 191 VSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVN 250
           VSGN N+AFRLSSHRE+DGVLYLDLQI+G LDRET P YSL+IEALDGG+PPLRG M VN
Sbjct: 213 VSGNVNDAFRLSSHRERDGVLYLDLQISGFLDRETTPGYSLLIEALDGGTPPLRGLMTVN 272

Query: 251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD 310
           +TIQDVNDNQPIFNQSRYFATVPENATVGTS+ QV+A+D DA  NG VEY+INRRQSDK+
Sbjct: 273 ITIQDVNDNQPIFNQSRYFATVPENATVGTSVLQVYASDTDAEENGLVEYAINRRQSDKE 332

Query: 311 GLFNIDSKSGLIFVNKALDFETKEVHDLV------PRFAVEISSF--------------- 349
            +F ID ++G IF+NKALDFETKE+H+LV          +E ++F               
Sbjct: 333 QMFRIDPQTGAIFINKALDFETKELHELVVVAKDHGEQPLETTAFVSIRVTDVNDNQPTI 392

Query: 350 -------------DEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKS 396
                         E A+PG  V +IS  D D               + H +    DS  
Sbjct: 393 NVIFLSDDASPKISESAQPGEFVARISVHDPDSKTEYANVNVSLNGGEGHFALTTSDSSI 452

Query: 397 GLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTI 456
            L+ +   +D E+     L+V+ATD G P L +S ++ + I DVNDN P F+Q  Y+  +
Sbjct: 453 YLVIVNLPLDRESTSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQELYHANV 512

Query: 457 PENKPKGSCILKSIFYD 473
            E    G+ +L+ + +D
Sbjct: 513 MEVADPGTSVLQVLAHD 529

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195159445|ref|XP_002020589.1| GL15349 [Drosophila persimilis] gi|194117539|gb|EDW39582.1| GL15349 [Drosophila persimilis]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/497 (51%), Positives = 311/497 (62%), Gaps = 73/497 (14%)

Query: 11  AAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTG 70
           AA +  E  R LE+ EGVPV  ++G+IGD    DSGPPY+IV   G  V+TDL+I++ TG
Sbjct: 62  AASSDKERERKLEVFEGVPVDHQIGYIGDFDGIDSGPPYIIVAEAG--VETDLAIDRTTG 119

Query: 71  EIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPL 130
           EI                                     RTKV LDRETR+SYSLVAIPL
Sbjct: 120 EI-------------------------------------RTKVRLDRETRASYSLVAIPL 142

Query: 131 SGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNI 190
           SG NVRVVV V DENDNAPTFP P M IEFPENTPR+VKRTL  A+D DL  YNTQRYNI
Sbjct: 143 SGLNVRVVVTVKDENDNAPTFPQPAMHIEFPENTPREVKRTLLPARDLDLEPYNTQRYNI 202

Query: 191 VSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVN 250
           VSGN N+AFRLSSHRE+DGVLYLDLQI+G LDRET P YSL+IEALDGG+PPLRG M VN
Sbjct: 203 VSGNVNDAFRLSSHRERDGVLYLDLQISGFLDRETTPGYSLLIEALDGGTPPLRGLMTVN 262

Query: 251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD 310
           +TIQDVNDNQPIFNQSRYFATVPENATVGTS+ QV+A+D DA  NG VEY+INRRQSDK+
Sbjct: 263 ITIQDVNDNQPIFNQSRYFATVPENATVGTSVLQVYASDTDAEENGLVEYAINRRQSDKE 322

Query: 311 GLFNIDSKSGLIFVNKALDFETKEVHDLV------PRFAVEISSF--------------- 349
            +F ID ++G IF+NKALDFETKE+H+LV          +E ++F               
Sbjct: 323 QMFRIDPQTGAIFINKALDFETKELHELVVVAKDHGEQPLETTAFVSIRVTDVNDNQPTI 382

Query: 350 -------------DEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKS 396
                         E A+PG  V +IS  D D               + H +    DS  
Sbjct: 383 NVIFLSDDASPKISESAQPGEFVARISVHDPDSKTEYANVNVSLNGGEGHFALTTRDSSI 442

Query: 397 GLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTI 456
            L+ +   +D E+     L+V+ATD G P L +S ++ + I DVNDN P F+Q  Y+  +
Sbjct: 443 YLVIVNLPLDRESTSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQELYHANV 502

Query: 457 PENKPKGSCILKSIFYD 473
            E    G+ +L+ + +D
Sbjct: 503 MEVADPGTSVLQVLAHD 519

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297319|ref|XP_555589.3| AGAP007909-PA [Anopheles gambiae str. PEST] gi|157015138|gb|EAL39705.3| AGAP007909-PA [Anopheles gambiae str. PEST]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/361 (63%), Positives = 262/361 (72%), Gaps = 55/361 (15%)

Query: 134 NVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSG 193
           NVRVVVRV+DENDNAPTFP+P MSIEFPENTPRDVKRTLN A+D DLG YNTQRY+IVSG
Sbjct: 1   NVRVVVRVLDENDNAPTFPTPIMSIEFPENTPRDVKRTLNPARDADLGRYNTQRYSIVSG 60

Query: 194 NTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTI 253
           N NNAFRLSSHRE+DGVLYLDLQING LDRET P YSLV+EALDGGSPPLRG M VN+TI
Sbjct: 61  NVNNAFRLSSHRERDGVLYLDLQINGFLDRETTPAYSLVVEALDGGSPPLRGQMTVNITI 120

Query: 254 QDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLF 313
           QDVNDNQPIFNQSRYFATVPENAT+GT++ QV+ATD DAG NG+VEY+INRRQSDK+ +F
Sbjct: 121 QDVNDNQPIFNQSRYFATVPENATLGTTVLQVYATDQDAGENGQVEYAINRRQSDKEQMF 180

Query: 314 NIDSKSGLIFVNKALDFETKEVHDLV------PRFAVEISSF------------------ 349
            ID  +GLI VNK LDFET+E+H+LV          +E ++F                  
Sbjct: 181 RIDPATGLISVNKPLDFETRELHELVVVAKDRGMQPLETTAFVSIRVTDVNDNQPIINVI 240

Query: 350 ----------DEIAEPG---------------------TSVFQISAFDQDEGINSVITYS 378
                      E A+PG                     TSV Q++A D+DEG NS I YS
Sbjct: 241 FLSDDATPKISESAQPGEFVARISDVYHANVMEVADPGTSVIQVTAVDRDEGNNSAIVYS 300

Query: 379 LRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
           L +  D H  WFQIDS SGLIT ++++DCETDPVP+L V+A DNG P LSS+ TVLVTIH
Sbjct: 301 LLDTPDTHSHWFQIDSHSGLITTRAHIDCETDPVPQLIVMAQDNGRPPLSSTGTVLVTIH 360

Query: 439 D 439
           D
Sbjct: 361 D 361

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195470324|ref|XP_002087458.1| GE15963 [Drosophila yakuba] gi|194173559|gb|EDW87170.1| GE15963 [Drosophila yakuba]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/497 (50%), Positives = 307/497 (61%), Gaps = 73/497 (14%)

Query: 11  AAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTG 70
           AA    E  R LE+ EGV V  ++G+IGD    DSGPPY+IV   G  V+TDL+I++ TG
Sbjct: 73  AASHDQERERKLEVFEGVAVDYQIGYIGDFGGIDSGPPYIIVAEAG--VETDLAIDRATG 130

Query: 71  EIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPL 130
           EI                                     RTKV LDRETRSSYSLVAIPL
Sbjct: 131 EI-------------------------------------RTKVKLDRETRSSYSLVAIPL 153

Query: 131 SGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNI 190
           SG N+RV+V V DENDNAPTFP   M IEFPENTPR+VKRTL  A+D DL  YNTQRYNI
Sbjct: 154 SGRNIRVLVTVKDENDNAPTFPQASMHIEFPENTPREVKRTLLPARDLDLEPYNTQRYNI 213

Query: 191 VSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVN 250
           VSGN N+AFRLSSHRE+DGVLYLDLQI+G LDRET P YSL+IEALDGG+PPLRG M VN
Sbjct: 214 VSGNVNDAFRLSSHRERDGVLYLDLQISGFLDRETTPGYSLLIEALDGGTPPLRGFMTVN 273

Query: 251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD 310
           +TIQDVNDNQPIFNQSRYFATVPENATVGTS+ QV+A+D DA  NG VEY+INRRQSDK+
Sbjct: 274 ITIQDVNDNQPIFNQSRYFATVPENATVGTSVLQVYASDTDADENGLVEYAINRRQSDKE 333

Query: 311 GLFNIDSKSGLIFVNKALDFETKEVHDLV------PRFAVEISSF--------------- 349
            +F ID ++G I++NKALDFETKE+H+LV          +E ++F               
Sbjct: 334 QMFRIDPRTGAIYINKALDFETKELHELVVVAKDHGEQPLETTAFVSIRVTDVNDNQPTI 393

Query: 350 -------------DEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKS 396
                         E A+PG  V +IS  D D               D H +    D+  
Sbjct: 394 NVIFLSDDASPKISESAQPGEFVARISVHDPDSKTEYANVNVTLNGGDGHFALTTRDNSI 453

Query: 397 GLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTI 456
            L+ +   +D E      L+V+ATD G P L +S ++ + I DVNDN P F+Q  Y+  +
Sbjct: 454 YLVIVHLPLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQDLYHANV 513

Query: 457 PENKPKGSCILKSIFYD 473
            E    G+ +L+ + +D
Sbjct: 514 MEVADPGTSVLQVLAHD 530

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	483
FB|FBgn0000497	3503	ds "dachsous" [Drosophila mela	0.757	0.104	0.551	7.4e-117
UNIPROTKB|F1NB81	2475	F1NB81 "Uncharacterized protei	0.587	0.114	0.467	5.6e-90
UNIPROTKB|E1C566	2926	E1C566 "Uncharacterized protei	0.587	0.097	0.467	9e-90
ZFIN|ZDB-GENE-090313-302	1204	si:dkey-30k22.7 "si:dkey-30k22	0.579	0.232	0.409	7.7e-74
ZFIN|ZDB-GENE-050208-41	3286	dchs1b "dachsous 1b (Drosophil	0.559	0.082	0.455	3.2e-68
UNIPROTKB|I3LUS1	3297	DCHS1 "Uncharacterized protein	0.587	0.086	0.403	1.3e-64
UNIPROTKB|E1B969	3296	DCHS1 "Uncharacterized protein	0.587	0.086	0.403	2.1e-64
UNIPROTKB|Q96JQ0	3298	DCHS1 "Protocadherin-16" [Homo	0.587	0.086	0.406	1.5e-63
RGD|1309878	3278	Dchs1 "dachsous 1 (Drosophila)	0.596	0.087	0.4	3.1e-61
MGI|MGI:3045256	4981	Fat4 "FAT tumor suppressor hom	0.467	0.045	0.412	5.7e-56

FB|FBgn0000497 ds "dachsous" [Drosophila melanogaster (taxid:7227)]

 Score = 950 (339.5 bits), Expect = 7.4e-117, Sum P(2) = 7.4e-117
 Identities = 209/379 (55%), Positives = 260/379 (68%)

Query:   107 GEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPR 166
             GEIRTKV LDRETR+SYSLVAIPLSG N+RV+V V DENDNAPTFP   M IEFPENTPR
Sbjct:    77 GEIRTKVKLDRETRASYSLVAIPLSGRNIRVLVTVKDENDNAPTFPQTSMHIEFPENTPR 136

Query:   167 DVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETI 226
             +VKRTL  A+D DL  YNTQRYNIVSGN N+AFRLSSHRE+DGVLYLDLQI+G LDRET 
Sbjct:   137 EVKRTLLPARDLDLEPYNTQRYNIVSGNVNDAFRLSSHRERDGVLYLDLQISGFLDRETT 196

Query:   227 PEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVF 286
             P YSL+IEALDGG+PPLRG M VN+TIQDVNDNQPIFNQSRYFATVPENATVGTS+ QV+
Sbjct:   197 PGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGTSVLQVY 256

Query:   287 ATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEI 346
             A+D DA  NG VEY+INRRQSDK+ +F ID ++G I++NKALDFETKE+H+LV    V  
Sbjct:   257 ASDTDADENGLVEYAINRRQSDKEQMFRIDPRTGAIYINKALDFETKELHELV----VVA 312

Query:   347 SSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNV- 405
                 E     T+   I   D ++   ++    L   +DD        ++ G    + +V 
Sbjct:   313 KDHGEQPLETTAFVSIRVTDVNDNQPTINVIFL---SDDASPKISESAQPGEFVARISVH 369

Query:   406 --DCETDPVPKLTVIATDNGVPALSS--SATVLVTIHDVNDNEPIFDQSFYNVTIPENKP 461
               D +T+       +   +G  AL++  ++  LV +H   D E + + +   V   +  P
Sbjct:   370 DPDSKTEYANVNVTLNGGDGHFALTTRDNSIYLVIVHLPLDREIVSNYTLSVVATDKGTP 429

Query:   462 KGSCILKSIFYDIFNISEH 480
                   KSIF  I +++++
Sbjct:   430 PLHAS-KSIFLRITDVNDN 447

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0005886 "plasma membrane" evidence=ISS

GO:0018149 "peptide cross-linking" evidence=IPI

GO:0016021 "integral to membrane" evidence=TAS

GO:0004872 "receptor activity" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISS

GO:0050839 "cell adhesion molecule binding" evidence=ISS;IDA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0004871 "signal transducer activity" evidence=NAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP;TAS

GO:0016318 "ommatidial rotation" evidence=TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IMP;TAS

GO:0045317 "equator specification" evidence=IMP

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IMP

GO:0007164 "establishment of tissue polarity" evidence=NAS

GO:0001736 "establishment of planar polarity" evidence=IGI;IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0035222 "wing disc pattern formation" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0048592 "eye morphogenesis" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0090176 "microtubule cytoskeleton organization involved in establishment of planar polarity" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IGI

UNIPROTKB|F1NB81 F1NB81 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 604 (217.7 bits), Expect = 5.6e-90, Sum P(2) = 5.6e-90
 Identities = 136/291 (46%), Positives = 174/291 (59%)

Query:    56 GSAV--DTDLSI--EQNTGEIRTKVPLDRET-RSSYSLVAIPLSGENVRVVSFYEP--GE 108
             GSAV    DL I  EQ  G I   +        S+Y        G  V    + +   G 
Sbjct:    23 GSAVLGTLDLQIDEEQPAGTIIGDISAGLPPGTSAYMYFISAQEGSGVTTDLWIDENRGI 82

Query:   109 IRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDV 168
             I+T   LDRETR  YS +A+   G  V V ++V D ND+AP FP    + + PE+TP   
Sbjct:    83 IKTARVLDRETRDHYSFIAVTPEGITVEVNIQVNDINDHAPAFPKQHSTFQIPEHTPVGS 142

Query:   169 KRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPE 228
             +  L+ A D D G+ NTQ Y I   N   AFRL + R  +GVLYLDL ++ VLDRE    
Sbjct:   143 RFPLDPAFDADSGLLNTQGYVIKGDNVGQAFRLETRRGPNGVLYLDLVVSNVLDRENRSS 202

Query:   229 YSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFAT 288
             YSLV+EA DGG+PP    M ++V+IQD+NDN P FNQSRY   + EN   G+SI QVFA+
Sbjct:   203 YSLVLEAYDGGTPPRSSQMTLDVSIQDINDNAPAFNQSRYHTLISENLKPGSSILQVFAS 262

Query:   289 DADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
             DAD G NG+V Y INRRQSD D  F IDS++G+I +NK LD+E ++VH+LV
Sbjct:   263 DADEGDNGDVIYEINRRQSDPDQYFTIDSRTGVIKLNKGLDYEVRKVHELV 313

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C566 E1C566 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 604 (217.7 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
 Identities = 136/291 (46%), Positives = 174/291 (59%)

Query:    56 GSAV--DTDLSI--EQNTGEIRTKVPLDRET-RSSYSLVAIPLSGENVRVVSFYEP--GE 108
             GSAV    DL I  EQ  G I   +        S+Y        G  V    + +   G 
Sbjct:    17 GSAVLGTLDLQIDEEQPAGTIIGDISAGLPPGTSAYMYFISAQEGSGVTTDLWIDENRGI 76

Query:   109 IRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDV 168
             I+T   LDRETR  YS +A+   G  V V ++V D ND+AP FP    + + PE+TP   
Sbjct:    77 IKTARVLDRETRDHYSFIAVTPEGITVEVNIQVNDINDHAPAFPKQHSTFQIPEHTPVGS 136

Query:   169 KRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPE 228
             +  L+ A D D G+ NTQ Y I   N   AFRL + R  +GVLYLDL ++ VLDRE    
Sbjct:   137 RFPLDPAFDADSGLLNTQGYVIKGDNVGQAFRLETRRGPNGVLYLDLVVSNVLDRENRSS 196

Query:   229 YSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFAT 288
             YSLV+EA DGG+PP    M ++V+IQD+NDN P FNQSRY   + EN   G+SI QVFA+
Sbjct:   197 YSLVLEAYDGGTPPRSSQMTLDVSIQDINDNAPAFNQSRYHTLISENLKPGSSILQVFAS 256

Query:   289 DADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
             DAD G NG+V Y INRRQSD D  F IDS++G+I +NK LD+E ++VH+LV
Sbjct:   257 DADEGDNGDVIYEINRRQSDPDQYFTIDSRTGVIKLNKGLDYEVRKVHELV 307

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-090313-302 si:dkey-30k22.7 "si:dkey-30k22.7" [Danio rerio (taxid:7955)]

 Score = 525 (189.9 bits), Expect = 7.7e-74, Sum P(2) = 7.7e-74
 Identities = 116/283 (40%), Positives = 158/283 (55%)

Query:    58 AVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFY-EPGEIRTKVPLD 116
             +V+  L  +   G+IR  +P   +T+SS   ++     E  R      + G I T V LD
Sbjct:    10 SVEEGLPAKTIVGDIRAGLPA--KTQSSGFFISESRDSEVFRDFEIDGDTGIISTAVVLD 67

Query:   117 RETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAK 176
             RE    Y   A  L+GE ++V ++V D NDN P FP   + +   E +P   +  L  A+
Sbjct:    68 RERTDKYEFAAATLTGEVIKVSIQVTDVNDNFPIFPVKIIHLNVSELSPPGTRFELEGAQ 127

Query:   177 DRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEAL 236
             D+D G Y TQ Y I  G     F++       G+  LDL +   LDRE    Y+  IEA 
Sbjct:   128 DKDEGDYGTQGYRITDGEMRELFKVEIRSNGVGMFNLDLVLQTRLDREIADFYNFTIEAF 187

Query:   237 DGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNG 296
             DGG PP  G +   +T+ D NDNQP+FNQS Y A + ENAT+ T + Q+FATDAD GSNG
Sbjct:   188 DGGVPPKTGQLQAQITVLDENDNQPVFNQSEYHAVILENATLMTPVCQIFATDADLGSNG 247

Query:   297 EVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
             +V Y INRRQSD +  F I S SG+I VNK LD+E +  ++L+
Sbjct:   248 QVIYGINRRQSDPNEFFIIGSSSGIISVNKHLDYENESYYELI 290

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050208-41 dchs1b "dachsous 1b (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 585 (211.0 bits), Expect = 3.2e-68, Sum P(2) = 3.2e-68
 Identities = 124/272 (45%), Positives = 170/272 (62%)

Query:   107 GEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPR 166
             G I+T   LDRE R  YS +A+ ++G  V+V + V D ND+APTFP    S++ PE T  
Sbjct:    76 GIIKTARRLDREERDHYSFIAVTMTGFTVKVSITVNDINDHAPTFPKKKASLKIPEQTAV 135

Query:   167 DVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETI 226
               K +L  A D D      Q Y I  GN    FRL + R  + VLYLDL +NGVLDRE  
Sbjct:   136 GTKFSLEPATDADKDQLTVQGYQIKEGNVGQVFRLETKRAANKVLYLDLVVNGVLDREKR 195

Query:   227 PEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVF 286
               YSLV+EA DGGSP   G M +++ +QD+ND+ P+FNQSRY A + E+   G++I QVF
Sbjct:   196 SSYSLVVEAFDGGSPRQNGQMTLDILVQDINDHAPVFNQSRYNAIISESLPQGSNILQVF 255

Query:   287 ATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEI 346
             A+DAD G NG V Y INRRQSD D  F ID +SG+I +NKALD+E ++VH+LV + A + 
Sbjct:   256 ASDADEGDNGLVLYEINRRQSDPDRYFVIDPRSGIITLNKALDYEMRKVHELVVQ-ARDN 314

Query:   347 SSFDEIAEPGTSVFQISAFDQDEGINSVITYS 378
             +S  EI     ++  +  ++ ++   ++I  S
Sbjct:   315 ASHPEITNAFVTI-HVRDYNDNQPTMTIIFLS 345

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LUS1 DCHS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 533 (192.7 bits), Expect = 1.3e-64, Sum P(2) = 1.3e-64
 Identities = 117/290 (40%), Positives = 158/290 (54%)

Query:    56 GSAVDTDLSIEQNT------GEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEI 109
             G A   DL I++        G+I   +P        Y + A   SG    +      G +
Sbjct:    40 GQAGSLDLQIDEEQPAGTLIGDISAGLPAGMAAPPMYFISAQEGSGVGTDLAIDEHSGVV 99

Query:   110 RTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVK 169
             RT   LDRE R  Y   A+   G  V V VRV D ND+AP FP     ++ PE+T    +
Sbjct:   100 RTARVLDRERRDRYRFTAVTPDGATVEVTVRVADINDHAPAFPQARAVLQVPEHTALGTR 159

Query:   170 RTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEY 229
               L  A+D D G   TQ Y++        FRL +    DG    +L + G LDRE    Y
Sbjct:   160 YPLEPARDADAGRLGTQGYSLSGDGAGETFRLETRPGPDGAPVPELVVTGELDRENRSHY 219

Query:   230 SLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATD 289
              L +EA DGGSPP R   +++VT+ D+ND+ P FNQSRY  TV E+   G+ + QV+A+D
Sbjct:   220 MLQLEAYDGGSPPRRAQALLDVTLLDINDHAPAFNQSRYHGTVSESLAPGSPVLQVYASD 279

Query:   290 ADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
             ADAG+NG V Y INRRQS+ DG F+ID+ +GL+ + + LDFE + VH+LV
Sbjct:   280 ADAGANGAVTYEINRRQSEGDGPFSIDAHTGLLRLERPLDFEQRRVHELV 329

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E1B969 DCHS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 530 (191.6 bits), Expect = 2.1e-64, Sum P(2) = 2.1e-64
 Identities = 117/290 (40%), Positives = 157/290 (54%)

Query:    56 GSAVDTDLSIEQNT------GEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEI 109
             G A   DL I++        G+I   +P        Y + A   SG    +      G +
Sbjct:    40 GQAGSLDLQIDEEQPAGTLIGDISAGLPAGTAAPPMYFISAQEGSGVGTDLAIDEHSGVV 99

Query:   110 RTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVK 169
             RT   LDRE R  Y   A+   G  V V VRV D ND+AP FP     ++ PE+T    +
Sbjct:   100 RTARVLDRERRDRYRFTAVTPDGATVEVTVRVADINDHAPAFPQARAVLQIPEHTALGTR 159

Query:   170 RTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEY 229
               L  A+D D G   TQ Y +        FRL +    DG    +L + G LDRE    Y
Sbjct:   160 YPLEPARDADAGRLGTQGYALSGDGAGETFRLETRPGPDGAPVPELVVTGELDRENRSHY 219

Query:   230 SLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATD 289
              L +EA DGGSPP R   +++VT+ D+ND+ P FNQSRY A V E+   G+ + QV+A+D
Sbjct:   220 MLQLEAYDGGSPPRRAQALLDVTLLDINDHAPAFNQSRYHAAVSESLAPGSPVLQVYASD 279

Query:   290 ADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
             ADAG+NG V Y INRRQS+ DG F+ID+ +GL+ + + LDFE + VH+LV
Sbjct:   280 ADAGANGAVTYEINRRQSEGDGPFSIDAHTGLLRLERPLDFEQRRVHELV 329

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q96JQ0 DCHS1 "Protocadherin-16" [Homo sapiens (taxid:9606)]

 Score = 530 (191.6 bits), Expect = 1.5e-63, Sum P(2) = 1.5e-63
 Identities = 118/290 (40%), Positives = 157/290 (54%)

Query:    56 GSAVDTDLSIEQNT------GEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEI 109
             G A   DL I++        G+I   +P        Y + A   SG    +      G +
Sbjct:    42 GQAGSLDLQIDEEQPAGTLIGDISAGLPAGTAAPLMYFISAQEGSGVGTDLAIDEHSGVV 101

Query:   110 RTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVK 169
             RT   LDRE R  Y   A+   G  V V VRV D ND+AP FP    +++ PE+T    +
Sbjct:   102 RTARVLDREQRDRYRFTAVTPDGATVEVTVRVADINDHAPAFPQARAALQVPEHTAFGTR 161

Query:   170 RTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEY 229
               L  A+D D G   TQ Y +        FRL +    DG    +L + G LDRE    Y
Sbjct:   162 YPLEPARDADAGRLGTQGYALSGDGAGETFRLETRPGPDGTPVPELVVTGELDRENRSHY 221

Query:   230 SLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATD 289
              L +EA DGGSPP R   +++VT+ D+ND+ P FNQSRY A V E+   G+ + QVFA+D
Sbjct:   222 MLQLEAYDGGSPPRRAQALLDVTLLDINDHAPAFNQSRYHAVVSESLAPGSPVLQVFASD 281

Query:   290 ADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
             ADAG NG V Y INRRQS+ DG F+ID+ +GL+ + + LDFE + VH+LV
Sbjct:   282 ADAGVNGAVTYEINRRQSEGDGPFSIDAHTGLLQLERPLDFEQRRVHELV 331

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

RGD|1309878 Dchs1 "dachsous 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 510 (184.6 bits), Expect = 3.1e-61, Sum P(2) = 3.1e-61
 Identities = 118/295 (40%), Positives = 157/295 (53%)

Query:    52 VP-VPGSAVDTDLSIEQNT------GEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFY 104
             VP + G A   DL I++        G+I   +P        Y + A   SG    +    
Sbjct:    18 VPGIRGQAGSLDLQIDEEQPAGTLIGDISAGLPPGTAPPPMYFISAQEGSGVGTDLDIDE 77

Query:   105 EPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENT 164
               G + T   LDRE R  Y   A+   G  V V VRV D ND+AP FP    +++ PE+T
Sbjct:    78 HSGVVCTARVLDRERRDRYRFTAVTPDGATVEVTVRVADINDHAPAFPQARAALQIPEHT 137

Query:   165 PRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRE 224
                 +  L  A D D G   TQ Y +        FRL +     G    +L I G LDRE
Sbjct:   138 ALGTRYPLEPAHDADAGRLGTQGYALSGDGAGETFRLETRPGPGGAPVPELVIAGELDRE 197

Query:   225 TIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQ 284
                 Y L +EA DGGSPP R   +++VT+ D+ND+ P FNQSRY A V E+   G+ + Q
Sbjct:   198 NRSHYMLQLEAYDGGSPPRRAQALLDVTLLDINDHAPAFNQSRYHAVVSESLAPGSPVLQ 257

Query:   285 VFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
             VFA+DADAG+NG V Y INRRQS+ DG F+ID+ +G + + + LDFE + VH+LV
Sbjct:   258 VFASDADAGANGAVTYEINRRQSEGDGPFSIDAHTGFLKLERPLDFEQRRVHELV 312

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3045256 Fat4 "FAT tumor suppressor homolog 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 412 (150.1 bits), Expect = 5.7e-56, Sum P(3) = 5.7e-56
 Identities = 99/240 (41%), Positives = 133/240 (55%)

Query:   107 GEIRTKVPLDRETRSS--YSLVAI---PLSGENVRVVVRVIDENDNAPTFPSPFMSIEFP 161
             G + T   +DRE+  S   +LV +   P     VRV+VR  D NDNAP FP P + + F 
Sbjct:    88 GALYTTATIDRESLPSDVVNLVVLSSSPTYPTEVRVLVR--DLNDNAPVFPDPSIVVTFK 145

Query:   162 ENTPRDVKRTLNAAKDRDLGIYNTQR--YNIVSGNTNNAFRLSSHREKDGV-LYLDLQIN 218
             E++    +  L+ A D D+G        Y IVSGN    FRL       G   +L L   
Sbjct:   146 EDSGSGRQVILDTATDSDIGSNGVDHHSYRIVSGNEAGRFRLDITLNPSGEGAFLHLVSK 205

Query:   219 GVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATV 278
             G LDRE  P+Y L++E  D G P  RG + VNVT+QD+NDN P+F  S Y A VPE+A V
Sbjct:   206 GGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVFGSSHYQAGVPEDAVV 265

Query:   279 GTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDL 338
             G+S+ QV A DAD G+N ++ Y    R  D+   F +D ++GLI V + LDFE +  + L
Sbjct:   266 GSSVLQVAAADADEGTNADIRY----RLQDEGTPFQMDPETGLITVREPLDFEARRQYSL 321

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24292	DS_DROME	No assigned EC number	0.5050	0.8778	0.1210	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	483
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	4e-25
smart00112	81	smart00112, CA, Cadherin repeats	3e-21
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	4e-21
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	3e-20
smart00112	81	smart00112, CA, Cadherin repeats	3e-18
pfam00028	92	pfam00028, Cadherin, Cadherin domain	8e-16
pfam00028	92	pfam00028, Cadherin, Cadherin domain	7e-15
pfam00028	92	pfam00028, Cadherin, Cadherin domain	8e-14
smart00112	81	smart00112, CA, Cadherin repeats	4e-11
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	5e-08
smart00112	81	smart00112, CA, Cadherin repeats	5e-08
pfam00028	92	pfam00028, Cadherin, Cadherin domain	6e-05

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 98.9 bits (247), Expect = 4e-25
 Identities = 43/91 (47%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPV 412
           A PGT V  +SA D D G N  +TYS+    +D    F ID  +G IT    +D E    
Sbjct: 10  APPGTVVLTVSATDPDSGENGEVTYSIVSGNEDG--LFSIDPSTGEITTAKPLDREEQSS 67

Query: 413 PKLTVIATDNGVPALSSSATVLVTIHDVNDN 443
             LTV ATD G P LSS+ATV +T+ DVNDN
Sbjct: 68  YTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 87.4 bits (217), Expect = 3e-21
 Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 363 SAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDN 422
           SA D D G N  +TYS+   + +    F ID ++G IT    +D E  P   LTV ATD 
Sbjct: 1   SATDADSGENGKVTYSI--LSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDG 58

Query: 423 GVPALSSSATVLVTIHDVNDNEP 445
           G P LSS+ATV +T+ DVNDN P
Sbjct: 59  GGPPLSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 157 SIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQ 216
            +  PEN P        +A D D G      Y+IVSGN +  F +       G +     
Sbjct: 3   EVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPS---TGEITT--- 56

Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDN 259
               LDRE    Y+L + A DGG PPL  +  V +T+ DVNDN
Sbjct: 57  -AKPLDREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 85.1 bits (211), Expect = 3e-20
 Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA 327
           Y  +VPENA  GT +  V ATD D+G NGEV YSI     ++DGLF+ID  +G I   K 
Sbjct: 2   YEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSI--VSGNEDGLFSIDPSTGEITTAKP 59

Query: 328 LDFETKEVHDLV 339
           LD E +  + L 
Sbjct: 60  LDREEQSSYTLT 71

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 78.9 bits (195), Expect = 3e-18
 Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 175 AKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIE 234
           A D D G      Y+I+SGN +  F +       G +         LDRE  PEY+L +E
Sbjct: 2   ATDADSGENGKVTYSILSGNDDGLFSIDPE---TGEITT----TKPLDREEQPEYTLTVE 54

Query: 235 ALDGGSPPLRGSMIVNVTIQDVNDNQP 261
           A DGG PPL  +  V +T+ DVNDN P
Sbjct: 55  ATDGGGPPLSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 72.3 bits (178), Expect = 8e-16
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 348 SFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDC 407
           S  E A  GT V  ++A D D G N  I YS+         WF+ID  +G ++    +D 
Sbjct: 4   SVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGG--WFRIDPDTGDLSTTKPLDR 61

Query: 408 ETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
           E+    +LTV+ATD+G P LSS+ TV +T+ 
Sbjct: 62  ESIGEYELTVLATDSGGPPLSSTTTVTITVL 92

Length = 92

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 69.6 bits (171), Expect = 7e-15
 Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 157 SIEFPENTPRDVKRTLNAAKDRDLGIYNTQ-RYNIVSGNTNNAFRLSSHREKDGVLYLDL 215
           S   PEN P   +     A D DLG  N +  Y+I+ G     FR+       G L    
Sbjct: 2   SASVPENAPVGTEVLTVTATDADLG-PNGRIFYSILGGGPGGWFRID---PDTGDLST-- 55

Query: 216 QINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQ 254
                LDRE+I EY L + A D G PPL  +  V +T+ 
Sbjct: 56  --TKPLDRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92

Length = 92

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 66.6 bits (163), Expect = 8e-14
 Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA 327
           Y A+VPENA VGT +  V ATDAD G NG + YSI        G F ID  +G +   K 
Sbjct: 1   YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSI--LGGGPGGWFRIDPDTGDLSTTKP 58

Query: 328 LDFETKEVHDLV 339
           LD E+   ++L 
Sbjct: 59  LDRESIGEYELT 70

Length = 92

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 58.5 bits (142), Expect = 4e-11
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 287 ATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
           ATDAD+G NG+V YSI     + DGLF+ID ++G I   K LD E +  + L 
Sbjct: 2   ATDADSGENGKVTYSIL--SGNDDGLFSIDPETGEITTTKPLDREEQPEYTLT 52

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 43/132 (32%)

Query: 22  LEISEGVPVGTRVGFIG--DGFVGDSGPP----YLIVPVPGSAVDTDLSIEQNTGEIRTK 75
           + + E  P GT V  +   D    DSG      Y IV      +    SI+ +TGEI T 
Sbjct: 4   VSVPENAPPGTVVLTVSATDP---DSGENGEVTYSIVSGNEDGL---FSIDPSTGEITTA 57

Query: 76  VPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENV 135
            PLDRE +SSY+L         V       P                      PLS    
Sbjct: 58  KPLDREEQSSYTLT--------VTATDGGGP----------------------PLSST-A 86

Query: 136 RVVVRVIDENDN 147
            V + V+D NDN
Sbjct: 87  TVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 8/52 (15%)

Query: 105 EPGEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAP 149
           E GEI T  PLDRE +  Y+L          PLS     V + V+D NDNAP
Sbjct: 31  ETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSST-ATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 23 EISEGVPVGTRVGFIGDGFVGD------SGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKV 76
           + E  PVGT V  +      D          Y I+            I+ +TG++ T  
Sbjct: 4  SVPENAPVGTEVLTVT---ATDADLGPNGRIFYSILGGG---PGGWFRIDPDTGDLSTTK 57

Query: 77 PLDRETRSSYSLVAI 91
          PLDRE+   Y L  +
Sbjct: 58 PLDRESIGEYELTVL 72

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	483
KOG4289|consensus	2531		100.0
KOG4289|consensus	2531		100.0
KOG1219|consensus	4289		100.0
KOG1219|consensus	4289		100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.97
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.96
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.7
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.7
KOG1834|consensus	952		99.67
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.65
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.57
KOG1834|consensus	952		99.52
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	98.35
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.36
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	96.58
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	96.51
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	96.31
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	96.08
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	95.95
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	95.27
PF13750	158	Big_3_3: Bacterial Ig-like domain (group 3)	94.29
KOG3597|consensus	442		93.79
TIGR00845	928	caca sodium/calcium exchanger 1. This model is spe	91.94
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	89.08
TIGR00845	928	caca sodium/calcium exchanger 1. This model is spe	83.46
TIGR03660	137	T1SS_rpt_143 T1SS-143 repeat domain. This model re	81.87

>KOG4289|consensus

Probab=100.00  E-value=1.3e-70  Score=573.77  Aligned_cols=426  Identities=34%  Similarity=0.464  Sum_probs=398.2

Q ss_pred             HhhhcCceEEEEEeCCCCCCeEEEEEEccCCCCCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCceeeEEEE
Q psy8629          12 AVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAI   91 (483)
Q Consensus        12 ~~~~~~~~~~~~v~En~~~gt~V~~v~a~d~d~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~   91 (483)
                      ++.|.+..|...++||.|+||.|.+++|.|++..++.|++.....+...++|+||+.+|.|++++.||||....+-|+|.
T Consensus       161 ~~~Fqq~~Yq~~lpEn~pagT~iasv~A~~~~a~rl~Ysm~al~dsRS~~lFslD~~sG~irta~~lDREt~e~HvlrVt  240 (2531)
T KOG4289|consen  161 AVQFQQPNYQKELPENEPAGTIIASVKASDPDAGRLYYSMVALFDSRSQNLFSLDPMSGAIRTAKSLDRETKETHVLRVT  240 (2531)
T ss_pred             CccCCCcchhccCcCCCCCCceeEEEEecCCCcCceEEEeeeccchhccccEeeccccccchhhhhhhhhhhheeEEEEE
Confidence            45899999999999999999999999999999888999998766666778999999999999999999999998989888


Q ss_pred             ecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEE
Q psy8629          92 PLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRT  171 (483)
Q Consensus        92 a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~  171 (483)
                      |.|.+.                               +.-+.+++|+|.|.|+|||.|+|.+.+|...+.||.++|..|.
T Consensus       241 A~d~~~-------------------------------P~~SAtttv~V~V~D~nDhsPvFEq~~Y~e~lREn~evGy~vL  289 (2531)
T KOG4289|consen  241 AQDHGD-------------------------------PRRSATTTVTVLVLDTNDHSPVFEQDEYREELRENLEVGYEVL  289 (2531)
T ss_pred             eeecCC-------------------------------CcccceeEEEEEEeecCCCCcccchhHHHHHHhhccccCceEE
Confidence            877543                               3334588999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEE
Q psy8629         172 LNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNV  251 (483)
Q Consensus       172 ~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I  251 (483)
                      +++|+|.|.++|+.+.|++..|++.+.|.|++.   +|.    |++.++||||+...|+|.|.|+|.|.|+...++.|.|
T Consensus       290 tvrAtD~Dsp~Nani~Yrl~eg~~~~~f~in~r---SGv----I~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~i  362 (2531)
T KOG4289|consen  290 TVRATDGDSPPNANIRYRLLEGNAKNVFEINPR---SGV----ISTRAPLDREELESYQLDVEASDQGRPPGPRTAMVEI  362 (2531)
T ss_pred             EEEeccCCCCCCCceEEEecCCCccceeEEcCc---cce----eeccCccCHHhhhheEEEEEeccCCCCCCCceEEEEE
Confidence            999999999999999999999988999999994   567    8899999999999999999999999998888999999


Q ss_pred             EEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCc
Q psy8629         252 TIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFE  331 (483)
Q Consensus       252 ~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E  331 (483)
                      +|.|+|||+|+|....|...|.|+..++++|++|+|+|.|.|.|+.+.|+|.  +++..+.|.||..||+|.+..+||||
T Consensus       363 tV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~--Sgn~~G~f~id~~tGel~vv~plD~e  440 (2531)
T KOG4289|consen  363 TVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIA--SGNGRGQFYIDSLTGELDVVEPLDFE  440 (2531)
T ss_pred             EEEecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEee--ccCccccEEEecccceEEEecccccc
Confidence            9999999999999999999999999999999999999999999999999995  57889999999999999999999999


Q ss_pred             ccceeeeEeE--------------EEE---Eee-------------eeeccCCCCeEEEEEEEEeCCCCCCceEEEEEee
Q psy8629         332 TKEVHDLVPR--------------FAV---EIS-------------SFDEIAEPGTSVFQISAFDQDEGINSVITYSLRE  381 (483)
Q Consensus       332 ~~~~~~l~v~--------------~~~---~v~-------------~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~  381 (483)
                      .. .|.+.|+              +++   .|+             ++.||.+.|..++.+.|.|.|.|.|+.++|++. 
T Consensus       441 ~~-~ytl~IrAqDggrPpLsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l~y~la-  518 (2531)
T KOG4289|consen  441 NS-EYTLRIRAQDGGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARLHYSLA-  518 (2531)
T ss_pred             CC-eeEEEEEcccCCCCCccCCCceEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccceeeeec-
Confidence            98 9999988              222   222             688999999999999999999999999999997 


Q ss_pred             CCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEecCCCCCeecCCceEEEEcCCCC
Q psy8629         382 NTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKP  461 (483)
Q Consensus       382 ~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~V~E~~~  461 (483)
                          ..+.|.|+..+|.|++.+.||||+.+.|.|-|.|+|.|.|++++.+.|.|.+.|+|||.|.|.+..|+..+.|++|
T Consensus       519 ----G~~pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl~inED~p  594 (2531)
T KOG4289|consen  519 ----GVGPFQINNGSGWITVTKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTLRINEDAP  594 (2531)
T ss_pred             ----cCCCeeEecCCceEEEeecccccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEEEecCCcc
Confidence                3458999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEEEeCCCCCCCcCC
Q psy8629         462 KGSCILKSIFYDIFNISEHSFK  483 (483)
Q Consensus       462 ~g~~v~~v~a~D~D~~~~~~~~  483 (483)
                      .|+.|.+|+|.|.|.++.++|.
T Consensus       595 vgsSI~tvtAvD~d~~s~ityq  616 (2531)
T KOG4289|consen  595 VGSSIVTVTAVDRDANSVITYQ  616 (2531)
T ss_pred             ccceEEEEEEeccccccceEEE
Confidence            9999999999999999988873

>KOG4289|consensus

Probab=100.00  E-value=6.5e-70  Score=568.57  Aligned_cols=419  Identities=34%  Similarity=0.439  Sum_probs=385.5

Q ss_pred             HhhhcCceEEEEEeCCCCCCeEEEEEEccCCC---CCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCceeeE
Q psy8629          12 AVAADEHLRDLEISEGVPVGTRVGFIGDGFVG---DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSL   88 (483)
Q Consensus        12 ~~~~~~~~~~~~v~En~~~gt~V~~v~a~d~d---~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l   88 (483)
                      ++-|+|++|.-++.||.++|..|.+++|+|.|   +..+.|++..+   .+.+.|+||+.+|.|+++.+||||+..+|.|
T Consensus       266 sPvFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg---~~~~~f~in~rSGvI~T~a~lDRE~~~~y~L  342 (2531)
T KOG4289|consen  266 SPVFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEG---NAKNVFEINPRSGVISTRAPLDREELESYQL  342 (2531)
T ss_pred             CcccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCC---CccceeEEcCccceeeccCccCHHhhhheEE
Confidence            46799999999999999999999999999965   66789999854   3456899999999999999999999999999


Q ss_pred             EEEecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCe
Q psy8629          89 VAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDV  168 (483)
Q Consensus        89 ~v~a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt  168 (483)
                      .|.|+|.+.                               +....++.|.|+|.|+|||+|+|....|..+|.|+..+++
T Consensus       343 ~VeAsDqG~-------------------------------~pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~a  391 (2531)
T KOG4289|consen  343 DVEASDQGR-------------------------------PPGPRTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPA  391 (2531)
T ss_pred             EEEeccCCC-------------------------------CCCCceEEEEEEEEecCCCCccccccceEEEecccCCCCc
Confidence            999988542                               1112278999999999999999999999999999999999


Q ss_pred             EEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECCCCCeeeEEE
Q psy8629         169 KRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMI  248 (483)
Q Consensus       169 ~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~  248 (483)
                      .|.+|+|+|.|.|.|+.+.|+|.+|+..+.|.|+..+   |.    +.+..+||+|.. .|++.|+|.|+|.|+++.+.-
T Consensus       392 vvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~t---Ge----l~vv~plD~e~~-~ytl~IrAqDggrPpLsn~sg  463 (2531)
T KOG4289|consen  392 VVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSLT---GE----LDVVEPLDFENS-EYTLRIRAQDGGRPPLSNTSG  463 (2531)
T ss_pred             eEEEEEecccCCCcCceEEEEeeccCccccEEEeccc---ce----EEEeccccccCC-eeEEEEEcccCCCCCccCCCc
Confidence            9999999999999999999999999999999999954   55    788899999998 999999999999999999999


Q ss_pred             EEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccC
Q psy8629         249 VNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKAL  328 (483)
Q Consensus       249 v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~L  328 (483)
                      +.|+|+|+|||+|.|....+..+|.|+.+.|..++.+.|.|.|.|+|+.+.|++.+     .+.|.|+..+|+|.+.+.|
T Consensus       464 l~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l~y~laG-----~~pf~I~~~SG~Itvtk~l  538 (2531)
T KOG4289|consen  464 LVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARLHYSLAG-----VGPFQINNGSGWITVTKEL  538 (2531)
T ss_pred             eEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccceeeeecc-----CCCeeEecCCceEEEeecc
Confidence            99999999999999999999999999999999999999999999999999999954     4589999999999999999


Q ss_pred             CCcccceeeeEeE-------------------------------------------------------------------
Q psy8629         329 DFETKEVHDLVPR-------------------------------------------------------------------  341 (483)
Q Consensus       329 D~E~~~~~~l~v~-------------------------------------------------------------------  341 (483)
                      |||+.+.|.|.|+                                                                   
T Consensus       539 drEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl~inED~pvgsSI~tvtAvD~d~~s~ityqi~  618 (2531)
T KOG4289|consen  539 DRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTLRINEDAPVGSSIVTVTAVDRDANSVITYQIT  618 (2531)
T ss_pred             cccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEEEecCCccccceEEEEEEeccccccceEEEec
Confidence            9999999998887                                                                   


Q ss_pred             --------------------------------------------------------------------EEEEee------
Q psy8629         342 --------------------------------------------------------------------FAVEIS------  347 (483)
Q Consensus       342 --------------------------------------------------------------------~~~~v~------  347 (483)
                                                                                          |+.+|+      
T Consensus       619 g~ntrn~Fsi~si~g~Glitlalp~dkKqe~~~vl~vtAtDg~l~d~~~V~v~I~danThrpvFqs~pfTvsI~e~rP~G  698 (2531)
T KOG4289|consen  619 GGNTRNRFSISSIGGGGLITLALPLDKKQERQYVLAVTATDGTLQDTCSVNVNITDANTHRPVFQSSPFTVSINEDRPLG  698 (2531)
T ss_pred             CCcccccceeeccCCcceEEeecchhhcccceEEEEEEecCCccccceEEEEEeeecccCCcccccCCeeEeeccCCcCC
Confidence                                                                                000000      


Q ss_pred             --------------------------------------------------------------------------------
Q psy8629         348 --------------------------------------------------------------------------------  347 (483)
Q Consensus       348 --------------------------------------------------------------------------------  347 (483)
                                                                                                      
T Consensus       699 ~tvvtlsasd~D~geNARI~y~led~~Frid~dsg~i~t~~~ld~edqvtytl~itA~D~~~pq~adtttveV~v~diND  778 (2531)
T KOG4289|consen  699 TTVVTLSASDEDTGENARITYILEDEAFRIDPDSGAIYTQAELDYEDQVTYTLAITARDNGIPQKADTTTVEVLVNDIND  778 (2531)
T ss_pred             ceeEEEecccCCCCccceEEEEecccceeecCCCCceEEeeeeecccceeeEeeeeecCCCCCCcCccEEEEEEeecccc
Confidence                                                                                            


Q ss_pred             ------------eeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEE
Q psy8629         348 ------------SFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL  415 (483)
Q Consensus       348 ------------~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l  415 (483)
                                  +|.|++|++|.|++|+|+|.|.|.|+.+.|.+..+. +..+.|.|++++|.|++.+.||||....|.|
T Consensus       779 naPqf~assyt~sV~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y~~qg~~-d~p~~F~IEptSGviRtl~rLdRE~~avy~L  857 (2531)
T KOG4289|consen  779 NAPQFLASSYTGSVFEDAPVFTSVLQVSATDADSGPNGRVYYTFQGGD-DGPGDFYIEPTSGVIRTLRRLDRENVAVYVL  857 (2531)
T ss_pred             cCcccchhhceeEeecCCCCcceEEEEEEeccCCCCCceEEEEecCCC-CCCCceEEccCcceeehhhhhcchheeEEEE
Confidence                        788999999999999999999999999999887543 3458899999999999999999999999999


Q ss_pred             EEEEEECCcCCceEEEEEEEEEEecCCCCCeecCCceEEEEcCCCCCCcEEEEEEEEeCCCCC
Q psy8629         416 TVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNIS  478 (483)
Q Consensus       416 ~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~V~E~~~~g~~v~~v~a~D~D~~~  478 (483)
                      .+.|+|.|.|++++++.|+|+|+|+|||||+|.+..|+..|.||.++|+.+++++|.|||.+.
T Consensus       858 ~a~avDrg~p~ls~~~eItvtvldvNDnaPvfe~~e~e~~I~enspvgs~va~i~a~dpdEG~  920 (2531)
T KOG4289|consen  858 AAYAVDRGNPPLSAPVEITVTVLDVNDNAPVFEQDELELFIEENSPVGSVVALITADDPDEGP  920 (2531)
T ss_pred             EEEEeeCCCCCcCCceEEEEEEEecCCCCCCCCCcceeeEEeecCccceeeEEEEccCCCcCC
Confidence            999999999999999999999999999999999999999999999999999999999999643

>KOG1219|consensus

Probab=100.00  E-value=8.2e-61  Score=514.24  Aligned_cols=447  Identities=31%  Similarity=0.421  Sum_probs=395.3

Q ss_pred             HhhhcCceEEEEEeCCCCCCeEEEEEEccCCC-CCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCceeeEEE
Q psy8629          12 AVAADEHLRDLEISEGVPVGTRVGFIGDGFVG-DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVA   90 (483)
Q Consensus        12 ~~~~~~~~~~~~v~En~~~gt~V~~v~a~d~d-~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v   90 (483)
                      ++.|.+..|.++++|+++.|+.|.++.|+|.| +..+.|+|..  ++.....|+|++.||+|++.+.||||+...|.+.+
T Consensus      2175 ~PvFeqlsYt~sisE~s~igt~viqilATdsDsn~~isYsl~g--~s~~sk~f~In~sTG~it~~g~ldyE~~q~f~~fv 2252 (4289)
T KOG1219|consen 2175 PPVFEQLSYTISISENSKIGTKVIQILATDSDSNREISYSLEG--NSEISKPFRINVSTGWITVAGKLDYEENQEFRFFV 2252 (4289)
T ss_pred             CchhheeeEEEEccCCCccCceEEEEEeccCCCCCceEEEeec--CCccccceEEecccceEEEeeecChhhcceEEEEE
Confidence            46799999999999999999999999999988 6678999986  44556789999999999999999999999999999


Q ss_pred             EecCCccee----------------------------------------EE-----------------------------
Q psy8629          91 IPLSGENVR----------------------------------------VV-----------------------------  101 (483)
Q Consensus        91 ~a~d~~~~~----------------------------------------~~-----------------------------  101 (483)
                      .|.||+...                                        ++                             
T Consensus      2253 ratdggk~lSseviv~V~VeD~Ndn~Pef~q~~~ea~vsd~a~~g~fit~v~a~D~Dssd~lk~ey~~~~~l~~s~~G~i 2332 (4289)
T KOG1219|consen 2253 RATDGGKPLSSEVIVEVHVEDFNDNPPEFNQRNYEAFVSDPARSGHFITVVNAHDLDSSDHLKLEYNSNHFLILSENGII 2332 (4289)
T ss_pred             EEccCCCcccccEEEEEEehhcCCCCchhccccceeecCCCccceeEEEEEEeccCCccchhhhhhcccceeeeccCceE
Confidence            999884210                                        00                             


Q ss_pred             --------------------------------------------------------------------------------
Q psy8629         102 --------------------------------------------------------------------------------  101 (483)
Q Consensus       102 --------------------------------------------------------------------------------  101 (483)
                                                                                                      
T Consensus      2333 TlfNl~k~~l~~s~~lrv~vsD~v~~at~~vl~~~~~~n~~~~lveka~l~Tv~~~~~~~~~~f~~~gt~~~~si~s~~s 2412 (4289)
T KOG1219|consen 2333 TLFNLLKSPLQTSYPLRVTVSDGVFRATMEVLFHPHSRNHFSELVEKADLVTVVEHDEQEDADFGAYGTSIYYSINSRAS 2412 (4289)
T ss_pred             EehhhcccccccccceeeeeccCcceeeeEEEEEecCcccchhhhhccceeEEEEecCccccccccCCceeeeeechhcc
Confidence                                                                                            


Q ss_pred             ---EeecCcEEEEcccCCccccceEEEEEEeC--CCC----eEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEE
Q psy8629         102 ---SFYEPGEIRTKVPLDRETRSSYSLVAIPL--SGE----NVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTL  172 (483)
Q Consensus       102 ---~~~~~g~l~~~~~ld~e~~~~~~~~~~~~--~~~----~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~  172 (483)
                         .+.+.|.|.+...||||....+.+.+..+  |++    -++++|.+.|+|||||.|....|++.|.|++..|..|++
T Consensus      2413 d~~~in~~GqI~t~~kld~e~s~~~vi~i~v~a~Da~gr~af~tvti~ltDiNDnpPqF~a~~Y~~nI~enaskg~~V~~ 2492 (4289)
T KOG1219|consen 2413 DHFEINKSGQIKTLSKLDREYSEELVIIIAVMAFDAGGRVAFCTVTIILTDINDNPPQFDAQLYRVNITENASKGKLVGH 2492 (4289)
T ss_pred             CceeECCCccEEeeehhhhccCceEEEEEEEEEecCCCeEEEEEEEEEEEecCCCCccccceeEEEEeecccCCCceEEE
Confidence               01136888889999999998888876654  654    678999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCceEEEEEEeC-CCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEE
Q psy8629         173 NAAKDRDLGIYNTQRYNIVSG-NTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNV  251 (483)
Q Consensus       173 v~a~D~D~~~~~~~~y~l~~~-~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I  251 (483)
                      +.|+|.|.+.|..++|.+.++ .....|.|++    +|.    |.+.+.|++++...|.|.|+|.|+|.|++.+..+|.+
T Consensus      2493 v~A~D~De~snadvty~i~~e~~~~~v~~in~----sG~----Itv~~sL~~~en~tl~l~vkA~D~g~P~~~s~ttV~v 2564 (4289)
T KOG1219|consen 2493 VIARDADEGSNADVTYEIVGESDVKHVFEINE----SGV----ITVKRSLDGLENSTLHLFVKAIDDGKPRRRSNTTVIV 2564 (4289)
T ss_pred             EEEecCCCCCcccEEEEecCchhhhheeeecC----Cce----EEeehhhhcccCcEEEEEEEeccCCCCCcccceEEEE
Confidence            999999999999999999876 2234566653    577    7889999999999999999999999999999999999


Q ss_pred             EEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCC---CcceEEeCCccEEEEcccC
Q psy8629         252 TIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDK---DGLFNIDSKSGLIFVNKAL  328 (483)
Q Consensus       252 ~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~---~~~F~Id~~tG~l~~~~~L  328 (483)
                      +|++..++.|.|+.+.|.++|+|+.++|+.|++++|.|.|.    ..-|++...++++   ...|.+|++||.|.++++|
T Consensus      2565 ~vl~e~v~lPrFSep~y~fsvpEDv~vG~~Ig~v~a~~a~~----~~i~~~v~~gt~Esn~d~~Fsvdr~TG~i~v~ksL 2640 (4289)
T KOG1219|consen 2565 TVLPEDVNLPRFSEPIYTFSVPEDVPVGEEIGQVSASDADE----HVIYSLVLGGTPESNPDLPFSVDRNTGMIKVNKSL 2640 (4289)
T ss_pred             EecCcccCcccccCceEEEeccccCCCCCeeeEEeecccCC----ceEEEEEeCCCCCCCCCCceEEcCCCceEEecccc
Confidence            99999999999999999999999999999999999999985    3566666544444   4459999999999999999


Q ss_pred             CCcccceeeeEeEE----------EEEee------------------eeeccCCCCeEEEEEEEEeCCCCCCceEEEEEe
Q psy8629         329 DFETKEVHDLVPRF----------AVEIS------------------SFDEIAEPGTSVFQISAFDQDEGINSVITYSLR  380 (483)
Q Consensus       329 D~E~~~~~~l~v~~----------~~~v~------------------~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~  380 (483)
                      |+|...+|.+.|..          .+.|.                  .+.||.+.|+.|++++|+|.|.|.|++|+|+|.
T Consensus      2641 D~E~kk~yqi~v~a~~~~~vva~tsv~vqVkDvNDNaPvFe~d~y~f~i~En~pvGtsV~qf~AsD~Ds~~nGqirysl~ 2720 (4289)
T KOG1219|consen 2641 DHEKKKSYQIKVKATCGQWVVAETSVFVQVKDVNDNAPVFEKDPYLFIIEENSPVGTSVIQFHASDMDSGNNGQIRYSLT 2720 (4289)
T ss_pred             chhhhceEEEEEEeecCCceEEEEEEEEEeecccCCCccccCCceeEEEeccCCCCceEEEEEeeccCCCCCceEEEEEc
Confidence            99999999999881          11111                  567999999999999999999999999999998


Q ss_pred             eCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEecCCCCCeecCCceEEEEcCCC
Q psy8629         381 ENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENK  460 (483)
Q Consensus       381 ~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~V~E~~  460 (483)
                      ..    ..+|.|++.||+|++...||+|++..|.|.|+|+|.|.|  ++.++|.|.|.|+||+||+|+...|.++|.|+.
T Consensus      2721 ~~----v~yF~In~etGwlTt~~eld~ek~d~y~lkv~AtDhG~~--ssq~~v~v~vtDvndspprf~~eiy~gtvv~d~ 2794 (4289)
T KOG1219|consen 2721 SP----VPYFAINPETGWLTTLFELDLEKQDLYSLKVVATDHGVP--SSQATVLVHVTDVNDSPPRFQREIYEGTVVEDV 2794 (4289)
T ss_pred             CC----cceEEEcCCCCeeeehhhhccccCCceEEEEEEecCCcc--cccceEEEEEEecCCCcchhhhHhhccceeccC
Confidence            42    339999999999999999999999999999999999986  788999999999999999999999999999999


Q ss_pred             CCCcEEEEEEEEeCCCCC
Q psy8629         461 PKGSCILKSIFYDIFNIS  478 (483)
Q Consensus       461 ~~g~~v~~v~a~D~D~~~  478 (483)
                      +.|.+++.++..|.|-..
T Consensus      2795 p~~~~ia~~si~d~D~s~ 2812 (4289)
T KOG1219|consen 2795 PGGKIIAGLSIFDADVSE 2812 (4289)
T ss_pred             CCCceeeeeEeccccccc
Confidence            999999999999999543

>KOG1219|consensus

Probab=100.00  E-value=4.6e-60  Score=508.46  Aligned_cols=416  Identities=29%  Similarity=0.400  Sum_probs=380.9

Q ss_pred             ceEEEEEeCCCCCCeEEEEEEccCCC---CCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCceeeEEEEecC
Q psy8629          18 HLRDLEISEGVPVGTRVGFIGDGFVG---DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLS   94 (483)
Q Consensus        18 ~~~~~~v~En~~~gt~V~~v~a~d~d---~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d   94 (483)
                      -..-+.|+|+.|.|+.++.++|+|.|   +..+.|-|..+.   .+..|.|+..+|.|++.++||+|....|.|.+.|.|
T Consensus       643 fP~iI~v~Edvpigt~la~L~atD~Dtgfng~l~yvI~dgn---e~~~~~Id~qsg~itvas~ld~~~t~~yiLnvta~D  719 (4289)
T KOG1219|consen  643 FPFIIVVPEDVPIGTTLAILSATDSDTGFNGKLVYVIEDGN---ESICFLIDRQSGNITVASPLDNENTEQYILNVTAYD  719 (4289)
T ss_pred             CCceEEccccCCCCceEEEEeccCCCCCcCceEEEEEeCCc---cceEEEEecccceEEEecchhhhhhheeEEEEEEec
Confidence            45678999999999999999999977   556789998643   456899999999999999999999999999999998


Q ss_pred             CcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEE
Q psy8629          95 GENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNA  174 (483)
Q Consensus        95 ~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~  174 (483)
                      ++.                               +.++....+.|.|.|.|||+|+|.+..|.++|+|+..+|+.|++|.
T Consensus       720 ~gt-------------------------------Pqkss~r~l~v~vkd~ndn~p~f~e~sy~vtvsedtepgs~Ia~ve  768 (4289)
T KOG1219|consen  720 LGT-------------------------------PQKSSWRLLLVFVKDYNDNTPIFVERSYHVTVSEDTEPGSFIAHVE  768 (4289)
T ss_pred             CCC-------------------------------chhhceeeEEEEEEecccCCccccccceEEEEecCCCCCceEEEEE
Confidence            763                               4455567788999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEE
Q psy8629         175 AKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQ  254 (483)
Q Consensus       175 a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~  254 (483)
                      |.|.|.|.||.++|+|..  +...|+|++.   +|.    +.+.++||||.+..|.|.|+|+|.+.|.+.+...+.|.|.
T Consensus       769 tnd~D~g~NG~v~fsL~n--~sdvfsIdp~---tGi----vv~~~sLdrE~q~~y~l~I~a~dqp~pq~~svv~l~vsve  839 (4289)
T KOG1219|consen  769 TNDTDGGNNGMVSFSLLN--KSDVFSIDPF---TGI----VVTSKSLDREGQTSYHLKIEARDQPPPQLFSVVELDVSVE  839 (4289)
T ss_pred             ecccCCCCCceEEEEecC--CcceEEecCc---ccE----EEeccccCcccCceeEEEEEEcCCCCCceEEEEEEEEEEe
Confidence            999999999999999976  5679999995   466    7889999999999999999999999999999999999999


Q ss_pred             ecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCcccc
Q psy8629         255 DVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKE  334 (483)
Q Consensus       255 dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E~~~  334 (483)
                      |+|||+|.|....+...|+|+.|.|+++..+.|.|+|.|+.++++|.+..    ....|.+|--+|.+++.++||||...
T Consensus       840 dVndnpPkci~~hsr~kipedlp~gt~~~~l~A~d~diGq~~kvry~l~~----~~v~~rvd~~sGavfi~~~LDf~k~~  915 (4289)
T KOG1219|consen  840 DVNDNPPKCIIRHSRSKIPEDLPYGTVTWQLVALDPDIGQLGKVRYYLTD----DTVGERVDFPSGAVFIGKPLDFEKSD  915 (4289)
T ss_pred             eccCCCCccccccccccCcccCCCceEEEEhhhcCcccCcCceeEEEEec----CccccccccccccEEEeccccccccc
Confidence            99999999999999999999999999999999999999999999999964    23445999999999999999999999


Q ss_pred             eeeeEeEEE------------EEee--------------------eeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeC
Q psy8629         335 VHDLVPRFA------------VEIS--------------------SFDEIAEPGTSVFQISAFDQDEGINSVITYSLREN  382 (483)
Q Consensus       335 ~~~l~v~~~------------~~v~--------------------~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~  382 (483)
                      .|+|.|++.            ..|.                    +|.||++.|+.++.+.|.|.|.|..+.+.|+|.  
T Consensus       916 fynLsv~a~d~g~p~lss~chl~Vevldv~enlhpp~F~~~v~e~~V~EnapiGT~vi~i~A~dedsgldg~l~Y~I~--  993 (4289)
T KOG1219|consen  916 FYNLSVTAVDRGTPILSSICHLEVEVLDVNENLHPPEFISFVTEGHVLENAPIGTIVIRIQARDEDSGLDGELSYKIR--  993 (4289)
T ss_pred             ceEEEEEEecCCCcceeeeEEEEEEEeccCCCCCCcchheeeeeeeEeecCCcceEEEEEEEecCCCCccceEEEEEE--
Confidence            999998811            1111                    789999999999999999999999999999999  


Q ss_pred             CCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEecCCCCCeecCCceEEEEcCCCCC
Q psy8629         383 TDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPK  462 (483)
Q Consensus       383 ~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~V~E~~~~  462 (483)
                      .|...+.|.||.++|.|++.+.||||....|-|+|.|+|.|.+++++.+.+.|.|+|+|||+|+|.++.|..+|.||+|.
T Consensus       994 ~gdg~g~FsId~~tG~irTl~~lDrE~ks~YwltveA~D~gt~~~ssv~~vyI~ieDvNDn~Pq~s~pvy~asI~enSp~ 1073 (4289)
T KOG1219|consen  994 TGDGDGIFSIDSTTGSIRTLKALDREKKSSYWLTVEAKDLGTVPLSSVCEVYIEIEDVNDNVPQFSSPVYYASISENSPE 1073 (4289)
T ss_pred             cCCcceeEEecCCcceEeechhhchhhcceEEEEEEEEecCCCccccceeEEEEEEecCCCCcccCCceEeeeeccCCCC
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEEEeCCCCC--CCcC
Q psy8629         463 GSCILKSIFYDIFNIS--EHSF  482 (483)
Q Consensus       463 g~~v~~v~a~D~D~~~--~~~~  482 (483)
                      +..|.++.|.|||+.+  .+.|
T Consensus      1074 ~vsivq~ea~D~Dsssn~kLmy 1095 (4289)
T KOG1219|consen 1074 TVSIVQAEANDPDSSSNQKLMY 1095 (4289)
T ss_pred             ceEEEEeccCCCCcccCcceEE
Confidence            9999999999999544  5554

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.97  E-value=3.7e-29  Score=231.03  Aligned_cols=198  Identities=44%  Similarity=0.654  Sum_probs=178.0

Q ss_pred             eEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEE
Q psy8629         156 MSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEA  235 (483)
Q Consensus       156 ~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a  235 (483)
                      |.+.|+|+++.|+.++++.|.|+|.+.++.++|+|.++....+|.|++.   +|.    |.+.+.||||....|.|.|+|
T Consensus         2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~---tG~----l~~~~~lD~e~~~~~~l~v~a   74 (199)
T cd00031           2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPN---TGV----ITTTKPLDREEQSEYTLTVVA   74 (199)
T ss_pred             eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCC---CCE----EEECCCCCCcCCceEEEEEEE
Confidence            7899999999999999999999999888899999998765579999985   466    778899999999999999999


Q ss_pred             EECCCCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEE
Q psy8629         236 LDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI  315 (483)
Q Consensus       236 ~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~I  315 (483)
                      +|.|.|.++++..++|.|.|+||++|.|....|.+.+.|+.+.|+.++++.|+|+|.+.++.++|+|..           
T Consensus        75 ~D~g~~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~-----------  143 (199)
T cd00031          75 SDGGGPPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSILS-----------  143 (199)
T ss_pred             EECCcCcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeC-----------
Confidence            999888888999999999999999999998899999999999999999999999998766777777742           


Q ss_pred             eCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCC
Q psy8629         316 DSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSK  395 (483)
Q Consensus       316 d~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~  395 (483)
                                                                                          +...++|.|++.
T Consensus       144 --------------------------------------------------------------------~~~~~~f~i~~~  155 (199)
T cd00031         144 --------------------------------------------------------------------GNDKELFSIDPN  155 (199)
T ss_pred             --------------------------------------------------------------------CCCCCEEEEeCC
Confidence                                                                                111357888888


Q ss_pred             CcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEe
Q psy8629         396 SGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHD  439 (483)
Q Consensus       396 tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~d  439 (483)
                      +|.|.+.+.||||....|.|.|.|+|.+.|.+++++.++|.|.|
T Consensus       156 ~G~i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~d  199 (199)
T cd00031         156 TGIITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVLD  199 (199)
T ss_pred             ceEEEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEEC
Confidence            99999999999999999999999999988889999999999875

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.96  E-value=5.4e-28  Score=223.19  Aligned_cols=196  Identities=34%  Similarity=0.503  Sum_probs=172.2

Q ss_pred             eEEEEEeCCCCCCeEEEEEEccCCCC---CCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCceeeEEEEecCC
Q psy8629          19 LRDLEISEGVPVGTRVGFIGDGFVGD---SGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSG   95 (483)
Q Consensus        19 ~~~~~v~En~~~gt~V~~v~a~d~d~---~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d~   95 (483)
                      .|.++|+||+++|+.|+++.|.|.|.   ..+.|+|.+...   ..+|.|++.+|+|++.++||||....|.|.+.|.|+
T Consensus         1 ~~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~---~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~   77 (199)
T cd00031           1 SYSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNE---DGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDG   77 (199)
T ss_pred             CeEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCC---cccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEEC
Confidence            47899999999999999999999874   457899986532   258999999999999999999999999999999884


Q ss_pred             cceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEE
Q psy8629          96 ENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAA  175 (483)
Q Consensus        96 ~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a  175 (483)
                      +..                               ....+..+.|.|.|+|||+|.|....|.+.|.|+.+.|+.++++.|
T Consensus        78 g~~-------------------------------~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a  126 (199)
T cd00031          78 GGP-------------------------------PLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTA  126 (199)
T ss_pred             CcC-------------------------------cceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEE
Confidence            321                               0113678999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEe
Q psy8629         176 KDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD  255 (483)
Q Consensus       176 ~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~d  255 (483)
                      +|+|.+.++.++|+|.++.....|.|++   .+|.    |.+.+.||||....|.|.|.|+|.+.|.+++++.++|.|.|
T Consensus       127 ~D~D~~~~~~~~y~l~~~~~~~~f~i~~---~~G~----i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~d  199 (199)
T cd00031         127 TDADSGENAKLTYSILSGNDKELFSIDP---NTGI----ITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVLD  199 (199)
T ss_pred             EcCCCCCCccEEEEEeCCCCCCEEEEeC---CceE----EEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEEC
Confidence            9999988899999999876557999998   4566    77788999999999999999999988889999999999875

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.70  E-value=3.5e-16  Score=125.80  Aligned_cols=89  Identities=46%  Similarity=0.583  Sum_probs=84.0

Q ss_pred             eeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEEC-CcCC
Q psy8629         348 SFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDN-GVPA  426 (483)
Q Consensus       348 ~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~-g~p~  426 (483)
                      .+.|++++|+.++++.|.|+|.+.|+.+.|+|..  ++...+|.|++.+|.|++.+.||||..+.|.|.|.|+|. |.|+
T Consensus         4 ~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~--~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~~   81 (93)
T PF00028_consen    4 SVPENAPPGTVVGQVTATDPDSGPNSQITYSILG--GNPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSPP   81 (93)
T ss_dssp             EEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEE--TTSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSSE
T ss_pred             EEECCCCCCCEEEEEEEEeCCCCCCceEEEEEec--CcccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCCC
Confidence            5789999999999999999999999999999994  445899999999999999999999999999999999999 8999


Q ss_pred             ceEEEEEEEEEE
Q psy8629         427 LSSSATVLVTIH  438 (483)
Q Consensus       427 ~s~~~~v~I~V~  438 (483)
                      ++++++|.|+|+
T Consensus        82 ~~~~~~V~I~V~   93 (93)
T PF00028_consen   82 LSSTATVTINVL   93 (93)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEC
Confidence            999999999985

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.70  E-value=5.9e-16  Score=124.51  Aligned_cols=92  Identities=33%  Similarity=0.552  Sum_probs=86.5

Q ss_pred             eEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEE
Q psy8629         156 MSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEA  235 (483)
Q Consensus       156 ~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a  235 (483)
                      |.+.|+|++++|+.++++.|.|+|.+.|+.+.|+|.+++....|.|++.   +|.    |.+.++||||..+.|.|.|.|
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~---tg~----i~~~~~LD~E~~~~y~l~v~a   73 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPN---TGE----ISLKKPLDRETQSSYQLTVRA   73 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETT---TTE----EEESSSSCTTTTSEEEEEEEE
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeee---eec----cccceecCcccCCEEEEEEEE
Confidence            7899999999999999999999999999999999999988899999995   455    888999999999999999999


Q ss_pred             EEC-CCCCeeeEEEEEEEEE
Q psy8629         236 LDG-GSPPLRGSMIVNVTIQ  254 (483)
Q Consensus       236 ~D~-g~p~~~~~~~v~I~V~  254 (483)
                      +|. |.|++++++.|+|+|+
T Consensus        74 ~D~~~~~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   74 TDSGGSPPLSSTATVTINVL   93 (93)
T ss_dssp             EETTTSSEEEEEEEEEEEEE
T ss_pred             EECCCCCCCEEEEEEEEEEC
Confidence            999 8999999999999985

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>KOG1834|consensus

Probab=99.67  E-value=4.4e-15  Score=148.85  Aligned_cols=212  Identities=26%  Similarity=0.300  Sum_probs=161.9

Q ss_pred             EecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCC---CceEEEEEEeCCCCCceEEecccCCCceEEEEEEe
Q psy8629         141 VIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGI---YNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQI  217 (483)
Q Consensus       141 V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~---~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~  217 (483)
                      .--+|-+.| +....|...|.||-..-....-+.|-|.|.+.   .....|.|.+.  .-+|.+......+|.-.  |+.
T Consensus        23 aarankhkp-wie~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq--~vPFdavVvdK~TGegv--lRa   97 (952)
T KOG1834|consen   23 AARANKHKP-WIEEEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQ--PVPFDAVVVDKYTGEGV--LRA   97 (952)
T ss_pred             cccccccCc-ccccceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCC--CCCceEEEEeccCCceE--Eee
Confidence            345677777 55677999999997644444457888999742   12346777653  44777655544555433  778


Q ss_pred             ccCCCCCCCCEEEEEEEEEECCC-C-----CeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCC
Q psy8629         218 NGVLDRETIPEYSLVIEALDGGS-P-----PLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDAD  291 (483)
Q Consensus       218 ~~~LD~E~~~~~~l~v~a~D~g~-p-----~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D  291 (483)
                      ..+||.|.++.|+|+|+|.|.|. |     ..+..++|.|+|.|+|+.+|+|..+.|.+.|.|. ..-..|++|.|.|.|
T Consensus        98 K~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EG-K~yd~il~veAiD~D  176 (952)
T KOG1834|consen   98 KEPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEG-KVYDSILRVEAIDKD  176 (952)
T ss_pred             cCcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecc-eeeeeeEEEEeecCC
Confidence            89999999999999999999664 3     3567789999999999999999999999999998 567788999999999


Q ss_pred             CCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCC
Q psy8629         292 AGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGI  371 (483)
Q Consensus       292 ~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~  371 (483)
                      .++                                                                            +
T Consensus       177 Csp----------------------------------------------------------------------------q  180 (952)
T KOG1834|consen  177 CSP----------------------------------------------------------------------------Q  180 (952)
T ss_pred             CCC----------------------------------------------------------------------------c
Confidence            754                                                                            1


Q ss_pred             CceE-EEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEe
Q psy8629         372 NSVI-TYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHD  439 (483)
Q Consensus       372 ~~~v-~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~d  439 (483)
                      +++| .|.|.    +..-.|.||. .|.|+...+|+|.+...|.|+|+|.|.|..+..+.+.|+|.|..
T Consensus       181 ~sqIC~YEI~----t~d~PFaIdn-~G~irnTekLny~ke~~Y~ltVtAyDCg~kraa~d~lV~v~Vkp  244 (952)
T KOG1834|consen  181 YSQICEYEIT----TPDVPFAIDN-DGNIRNTEKLNYTKEHQYKLTVTAYDCGKKRAASDSLVTVHVKP  244 (952)
T ss_pred             ccceeEEEec----CCCCceEEcC-CCccccccccccccceeEEEEEEEEecccccccCcceEEEEecC
Confidence            2222 35555    2456799985 59999999999999999999999999998655555777887764

>smart00112 CA Cadherin repeats

Probab=99.65  E-value=1.1e-15  Score=118.86  Aligned_cols=79  Identities=48%  Similarity=0.641  Sum_probs=73.0

Q ss_pred             EeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEecCCCC
Q psy8629         365 FDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNE  444 (483)
Q Consensus       365 ~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~  444 (483)
                      +|+|.|.|+.++|+|...  +...+|.|++.+|.|.+.++||||....|.|.|+|+|.|.|+++++++|.|.|.|+|||+
T Consensus         1 ~D~D~g~n~~i~Y~i~~~--~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~   78 (79)
T smart00112        1 TDADSGENGKVTYSILSG--NEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNA   78 (79)
T ss_pred             CCCCCCcCcEEEEEEecC--CCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCC
Confidence            488999999999999943  333899999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q psy8629         445 P  445 (483)
Q Consensus       445 P  445 (483)
                      |
T Consensus        79 P   79 (79)
T smart00112       79 P   79 (79)
T ss_pred             C
Confidence            8

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>smart00112 CA Cadherin repeats

Probab=99.57  E-value=2.1e-14  Score=111.66  Aligned_cols=79  Identities=44%  Similarity=0.743  Sum_probs=71.7

Q ss_pred             EeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEe
Q psy8629         176 KDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD  255 (483)
Q Consensus       176 ~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~d  255 (483)
                      +|+|.|.|+.+.|+|.+++...+|.|++.+   |.    +.+.++||||..+.|.|.|+|+|.|.|++++.+.|+|+|.|
T Consensus         1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~t---g~----i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D   73 (79)
T smart00112        1 TDADSGENGKVTYSILSGNEDGLFSIDPET---GE----ITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLD   73 (79)
T ss_pred             CCCCCCcCcEEEEEEecCCCCCEEEEeCCc---cE----EEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEE
Confidence            488999999999999987755899999854   54    67788999999999999999999999999999999999999


Q ss_pred             cCCCCC
Q psy8629         256 VNDNQP  261 (483)
Q Consensus       256 vNd~~P  261 (483)
                      +|||+|
T Consensus        74 ~Nd~~P   79 (79)
T smart00112       74 VNDNAP   79 (79)
T ss_pred             CCCCCC
Confidence            999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>KOG1834|consensus

Probab=99.52  E-value=8.3e-13  Score=132.80  Aligned_cols=204  Identities=20%  Similarity=0.209  Sum_probs=150.6

Q ss_pred             hcCceEEEEEeCCCCCCeEEEEEEccCCCC------CCCCEEEEecCCCCCcccEEEeCCcc--EEEeCccCCccCCcee
Q psy8629          15 ADEHLRDLEISEGVPVGTRVGFIGDGFVGD------SGPPYLIVPVPGSAVDTDLSIEQNTG--EIRTKVPLDRETRSSY   86 (483)
Q Consensus        15 ~~~~~~~~~v~En~~~gt~V~~v~a~d~d~------~~~~y~i~~~~~~~~~~~F~Id~~tG--~i~~~~~LD~E~~~~y   86 (483)
                      +...+|..-|.||--.=...--+.|.|.|.      .--.|.|-..  +-+-+.--+|+.||  .|+.+.+||-|.++.|
T Consensus        32 wie~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq--~vPFdavVvdK~TGegvlRaK~~lDCelqkey  109 (952)
T KOG1834|consen   32 WIEEEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQ--PVPFDAVVVDKYTGEGVLRAKEPLDCELQKEY  109 (952)
T ss_pred             ccccceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCC--CCCceEEEEeccCCceEEeecCcccccccccc
Confidence            556789999999975322223466666542      1124666532  11111233466664  7888889999999999


Q ss_pred             eEEEEecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCC
Q psy8629          87 SLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPR  166 (483)
Q Consensus        87 ~l~v~a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~  166 (483)
                      +++|+|.|.++.-      +|                   .....+..+++.|+|.|+|+.+|+|..+.|.+.|.|....
T Consensus       110 tf~iQAydCg~gp------dg-------------------tn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK~y  164 (952)
T KOG1834|consen  110 TFTIQAYDCGNGP------DG-------------------TNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGKVY  164 (952)
T ss_pred             eEEEEEEecCCCC------Cc-------------------cccccccceEEEEEeccccccCchhcccceeeEEecceee
Confidence            9999998865310      00                   0011233689999999999999999999999999998655


Q ss_pred             CeEEEEEEEEeCCCCC-Cce-EEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECCCCCee
Q psy8629         167 DVKRTLNAAKDRDLGI-YNT-QRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLR  244 (483)
Q Consensus       167 gt~v~~v~a~D~D~~~-~~~-~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~p~~~  244 (483)
                       ..|.++.|.|.|.++ ++. ..|.|..  +.-+|.|+.    .|.    |+...+|+|.+...|.|+|.|.|.|..+..
T Consensus       165 -d~il~veAiD~DCspq~sqIC~YEI~t--~d~PFaIdn----~G~----irnTekLny~ke~~Y~ltVtAyDCg~kraa  233 (952)
T KOG1834|consen  165 -DSILRVEAIDKDCSPQYSQICEYEITT--PDVPFAIDN----DGN----IRNTEKLNYTKEHQYKLTVTAYDCGKKRAA  233 (952)
T ss_pred             -eeeEEEEeecCCCCCcccceeEEEecC--CCCceEEcC----CCc----cccccccccccceeEEEEEEEEeccccccc
Confidence             678899999999874 444 4899987  566999994    566    888999999999999999999999986666


Q ss_pred             eEEEEEEEEEec
Q psy8629         245 GSMIVNVTIQDV  256 (483)
Q Consensus       245 ~~~~v~I~V~dv  256 (483)
                      +...|+|.|...
T Consensus       234 ~d~lV~v~Vkp~  245 (952)
T KOG1834|consen  234 SDSLVTVHVKPT  245 (952)
T ss_pred             CcceEEEEecCc
Confidence            668899998765

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=98.35  E-value=1.4e-06  Score=67.57  Aligned_cols=62  Identities=24%  Similarity=0.324  Sum_probs=43.3

Q ss_pred             eEEEEEeCCCCCCeEEEEEEccCCC-----CCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCc
Q psy8629          19 LRDLEISEGVPVGTRVGFIGDGFVG-----DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRS   84 (483)
Q Consensus        19 ~~~~~v~En~~~gt~V~~v~a~d~d-----~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~   84 (483)
                      +.+++|+|+.++||+||.+ |.|.+     -....|.+.+..   ...+|.+++.||.|+++.++|||+.+
T Consensus         2 qi~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~---~~~~~~v~~~tG~L~v~~rIDRE~LC   68 (84)
T PF08266_consen    2 QIRYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEG---NSQYFRVNEKTGDLFVSERIDREELC   68 (84)
T ss_dssp             EEEEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SS---SS-SEEE-TTTSEEEESS--SCCCC-
T ss_pred             CeEEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeecC---CcceeEecCCceeEEeCCccCHHHHC
Confidence            6789999999999999999 55643     224578887642   35699999999999999999999976

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.36  E-value=0.0016  Score=51.23  Aligned_cols=64  Identities=11%  Similarity=0.164  Sum_probs=31.9

Q ss_pred             HhhhcCceEEEEEeCCCCCCeEEEEEEccCCCCC-CCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCC
Q psy8629          12 AVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDS-GPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETR   83 (483)
Q Consensus        12 ~~~~~~~~~~~~v~En~~~gt~V~~v~a~d~d~~-~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~   83 (483)
                      -++|.++.|.+.|+.+...|..||+|+-.|..++ .+.|...+       ..|+|.+ .|.|++++++.....
T Consensus         3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~~~~~~~~ssD-------pdF~V~~-DGsVy~~r~v~l~~~   67 (90)
T PF08758_consen    3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTGRRRVIFESSD-------PDFRVLE-DGSVYAKRPVQLSSE   67 (90)
T ss_dssp             --B--S-EEEE----SS-SS--EEE---B--SS---EEEE----------SEEEEET-TTEEEEES--S-SSS
T ss_pred             cCCcccceEEEEcCchhhCCcEEEEEEeccCCCCCceEEecCC-------CCEEEcC-CCeEEEeeeEecCCC
Confidence            4789999999999999999999999999996543 45666553       2799995 599999998876443

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=96.58  E-value=0.054  Score=43.44  Aligned_cols=72  Identities=31%  Similarity=0.412  Sum_probs=54.6

Q ss_pred             EEeCCCCCCceEEEEEeeCCC-CCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEecCC
Q psy8629         364 AFDQDEGINSVITYSLRENTD-DHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVND  442 (483)
Q Consensus       364 a~D~D~~~~~~v~y~l~~~~~-~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd  442 (483)
                      ..|+|   +..++|++....+ ....|...|+.++.+.-. +.. +..+.|.++|+|+|+..  .++...++|.|.+.|+
T Consensus        24 F~d~d---~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~~-~~~g~~~i~v~a~D~~g--~~~~~~f~i~V~~~~~   96 (97)
T smart00736       24 FTDAD---GDTLTYSATLSDGSALPSWLSFDSDTGTLSGT-PTN-SDVGSLSLKVTATDSSG--ASASDTFTITVVNTND   96 (97)
T ss_pred             eECCC---CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CCC-CCCcEEEEEEEEEECCC--CEEEEEEEEEEeCCCC
Confidence            46776   4688999874322 456799999998887763 333 34577999999999864  5788899999999887

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=96.51  E-value=0.0018  Score=50.35  Aligned_cols=60  Identities=23%  Similarity=0.337  Sum_probs=37.7

Q ss_pred             eeeccCCCCeEEEEEEEEeCCCCCC--ceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCC
Q psy8629         348 SFDEIAEPGTSVFQISAFDQDEGIN--SVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD  410 (483)
Q Consensus       348 ~v~E~~~~gt~v~~v~a~D~D~~~~--~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~  410 (483)
                      +|+|..++|+.||.| |.|--....  ....|++..  .....+|.+++.+|.|.+...+|||.-
T Consensus         6 sV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s--~~~~~~~~v~~~tG~L~v~~rIDRE~L   67 (84)
T PF08266_consen    6 SVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVS--EGNSQYFRVNEKTGDLFVSERIDREEL   67 (84)
T ss_dssp             EEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE---SSSS-SEEE-TTTSEEEESS--SCCCC
T ss_pred             EeecCCCCCCEEEEh-HHhhCCCcccccccceEEee--cCCcceeEecCCceeEEeCCccCHHHH
Confidence            678999999999999 444432111  123577663  346789999999999999999999973

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=96.31  E-value=0.038  Score=44.12  Aligned_cols=92  Identities=18%  Similarity=0.234  Sum_probs=58.1

Q ss_pred             EEEEEEeCCCCCCceEEEEEEe-CCCCCceEEecccCCCceEEEEEE----eccCCCCCCCCEEEEEEEEEECCCCCeee
Q psy8629         171 TLNAAKDRDLGIYNTQRYNIVS-GNTNNAFRLSSHREKDGVLYLDLQ----INGVLDRETIPEYSLVIEALDGGSPPLRG  245 (483)
Q Consensus       171 ~~v~a~D~D~~~~~~~~y~l~~-~~~~~~F~i~~~~~~~g~~~~~l~----~~~~LD~E~~~~~~l~v~a~D~g~p~~~~  245 (483)
                      +++.++|+|.+..  ..+++.. ...-+.|.|+.    +|...+.+-    ..+.|.--+.-.-.|++++.|+.      
T Consensus         2 G~Lt~sD~D~gd~--~~~s~~~~~g~yGtlti~~----~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DGt------   69 (99)
T TIGR01965         2 GQLTISDADAGQA--HFIAQTDAAGQYGTFSIDA----DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGT------   69 (99)
T ss_pred             CceEEeCCCCCCc--eEEecccccCCcEEEEECC----CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCCC------
Confidence            4688999998753  4555532 12345688875    465554332    12334433444677888889962      


Q ss_pred             EEEEEEEEEecCCCCCeecCCceEEEecCCC
Q psy8629         246 SMIVNVTIQDVNDNQPIFNQSRYFATVPENA  276 (483)
Q Consensus       246 ~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~  276 (483)
                      +++|+|+|...|| +|+.... -...+.|+.
T Consensus        70 t~~vtItI~GtND-apvi~~~-~~g~v~ED~   98 (99)
T TIGR01965        70 SQTVTITITGAND-AAVIGGA-DTGSVTEDS   98 (99)
T ss_pred             eEEEEEEEEccCC-CCEEecc-cceeEecCC
Confidence            7889999999999 7766433 236777763

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=96.08  E-value=0.079  Score=42.32  Aligned_cols=89  Identities=22%  Similarity=0.281  Sum_probs=57.5

Q ss_pred             EEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEE-Ec-------ccCCCCCCCeeEEEEEEEECCcCCceEEE
Q psy8629         360 FQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLIT-MK-------SNVDCETDPVPKLTVIATDNGVPALSSSA  431 (483)
Q Consensus       360 ~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~-~~-------~~lD~E~~~~y~l~V~a~D~g~p~~s~~~  431 (483)
                      ++|.++|+|.+  ....+++... ...-+.|.|++ .|.-. ..       +.|.-.+...-.++|.++|+      .+.
T Consensus         2 G~Lt~sD~D~g--d~~~~s~~~~-~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DG------tt~   71 (99)
T TIGR01965         2 GQLTISDADAG--QAHFIAQTDA-AGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADG------TSQ   71 (99)
T ss_pred             CceEEeCCCCC--CceEEecccc-cCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCC------CeE
Confidence            56899999965  4456666422 23456799987 45322 11       22333334467888999995      278


Q ss_pred             EEEEEEEecCCCCCeecCCceEEEEcCCC
Q psy8629         432 TVLVTIHDVNDNEPIFDQSFYNVTIPENK  460 (483)
Q Consensus       432 ~v~I~V~dvNd~~P~f~~~~~~~~V~E~~  460 (483)
                      +|+|+|...|| +|+..... ...|.|+.
T Consensus        72 ~vtItI~GtND-apvi~~~~-~g~v~ED~   98 (99)
T TIGR01965        72 TVTITITGAND-AAVIGGAD-TGSVTEDS   98 (99)
T ss_pred             EEEEEEEccCC-CCEEeccc-ceeEecCC
Confidence            89999999999 66655432 56777764

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=95.95  E-value=0.1  Score=41.09  Aligned_cols=79  Identities=16%  Similarity=0.195  Sum_probs=40.8

Q ss_pred             CCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCC
Q psy8629         148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIP  227 (483)
Q Consensus       148 ~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~  227 (483)
                      .|-|....|.+.|+.+...|..+++|.-.|-...  ..+.|...  +  ..|.|.    .+|.    |.+.+++..... 
T Consensus         3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~~--~~~~~~ss--D--pdF~V~----~DGs----Vy~~r~v~l~~~-   67 (90)
T PF08758_consen    3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTGR--RRVIFESS--D--PDFRVL----EDGS----VYAKRPVQLSSE-   67 (90)
T ss_dssp             --B--S-EEEE----SS-SS--EEE---B--SS-----EEEE-------SEEEEE----TTTE----EEEES--S-SSS-
T ss_pred             cCCcccceEEEEcCchhhCCcEEEEEEeccCCCC--CceEEecC--C--CCEEEc----CCCe----EEEeeeEecCCC-
Confidence            5889999999999999999999999999888533  35667653  2  289999    5687    566777766443 


Q ss_pred             EEEEEEEEEECCCC
Q psy8629         228 EYSLVIEALDGGSP  241 (483)
Q Consensus       228 ~~~l~v~a~D~g~p  241 (483)
                      .-.|+|.|.|..+.
T Consensus        68 ~~~F~V~a~D~~~~   81 (90)
T PF08758_consen   68 QRSFTVHAWDSQTQ   81 (90)
T ss_dssp             -EEEEEEEEETTTT
T ss_pred             ceEEEEEEECCCCC
Confidence            35799999997763

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=95.27  E-value=0.29  Score=39.12  Aligned_cols=70  Identities=23%  Similarity=0.328  Sum_probs=48.4

Q ss_pred             EEeCCCCCCceEEEEEEeCC---CCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEE
Q psy8629         175 AKDRDLGIYNTQRYNIVSGN---TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNV  251 (483)
Q Consensus       175 a~D~D~~~~~~~~y~l~~~~---~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I  251 (483)
                      ..|+| +  ..++|++...+   -..+.++++.   ++.++     ..+...+ ...|.+.|.|+|+.+  .++...++|
T Consensus        24 F~d~d-~--~~lty~~~~~~~~~lP~Wl~fd~~---~~~~~-----GtP~~~~-~g~~~i~v~a~D~~g--~~~~~~f~i   89 (97)
T smart00736       24 FTDAD-G--DTLTYSATLSDGSALPSWLSFDSD---TGTLS-----GTPTNSD-VGSLSLKVTATDSSG--ASASDTFTI   89 (97)
T ss_pred             eECCC-C--CeEEEEEEeCCCCCCCCeEEEeCC---CCEEE-----EECCCCC-CcEEEEEEEEEECCC--CEEEEEEEE
Confidence            46777 2  37889886432   2457788874   34432     2344333 467999999999876  678889999


Q ss_pred             EEEecCC
Q psy8629         252 TIQDVND  258 (483)
Q Consensus       252 ~V~dvNd  258 (483)
                      .|.+.|+
T Consensus        90 ~V~~~~~   96 (97)
T smart00736       90 TVVNTND   96 (97)
T ss_pred             EEeCCCC
Confidence            9999886

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)

Probab=94.29  E-value=3.5  Score=36.25  Aligned_cols=82  Identities=16%  Similarity=0.213  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCC-CCCCCCEEEEEEEEEECCCCCeeeEEEE
Q psy8629         171 TLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVL-DRETIPEYSLVIEALDGGSPPLRGSMIV  249 (483)
Q Consensus       171 ~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~L-D~E~~~~~~l~v~a~D~g~p~~~~~~~v  249 (483)
                      ..+.++|.-.+. ...+.+|.+|.....-.+.......|...  +...+.+ ..|....|+|+|.|.|..+  ..++..+
T Consensus        69 i~i~~tD~~~~~-~i~sv~l~Gg~~~d~v~ls~~~~~~~~~~--~~yp~~fpsle~~~~YtLtV~a~D~aG--N~~~~si  143 (158)
T PF13750_consen   69 ISINVTDNSDDS-KITSVSLTGGPASDSVSLSWTNKGNGVYT--LEYPRIFPSLEADDSYTLTVSATDKAG--NQSTKSI  143 (158)
T ss_pred             eEEEEEeCCCCc-eEEEEEEECCcccceEEEeeEeccCceEE--eecccccCCcCCCCeEEEEEEEEecCC--CEEEEEE
Confidence            456777766543 34567776654343333332222334422  3222222 3377889999999999766  5777777


Q ss_pred             EEEEEecC
Q psy8629         250 NVTIQDVN  257 (483)
Q Consensus       250 ~I~V~dvN  257 (483)
                      .....+.|
T Consensus       144 ~F~y~P~~  151 (158)
T PF13750_consen  144 SFSYMPPN  151 (158)
T ss_pred             EEEEeCCe
Confidence            77766443

>KOG3597|consensus

Probab=93.79  E-value=6.1  Score=40.54  Aligned_cols=154  Identities=18%  Similarity=0.181  Sum_probs=88.2

Q ss_pred             CeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCC--------------CCCc
Q psy8629         133 ENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGN--------------TNNA  198 (483)
Q Consensus       133 ~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~--------------~~~~  198 (483)
                      .+....|.|.-+||.+..+....+.+.+.|+...-.....+.+.|+|.+. ..+.|++.+..              +.+.
T Consensus        24 ~~~~~~i~v~pvndpp~~~~~~~~~l~~~~~~~k~l~~~~l~~~d~d~~~-~~l~f~v~~t~~~~~~~~~~~~~g~~~~~  102 (442)
T KOG3597|consen   24 QTDVLRIHVNPVNDPPSLIFPSGSLLVILEGGQKVLDPELLTAADPDSAP-LPLEFQVLGTSSVPLPVLKFDVPGAPATE  102 (442)
T ss_pred             EEeeecccccccCCCcceeecccceEEeecCCceeccceEeeccCCCCCc-cceEEEEccCCCCCCccceeeccCCcccc
Confidence            36678899999999888777777778999997665566678899999765 35678876521              1122


Q ss_pred             eEEecccCCCceEEEEEEeccCCCCC--CCCEEEEEEEEEECCCCCeeeEEEEEEEEEecCCCCCeecCCc-eEEEecCC
Q psy8629         199 FRLSSHREKDGVLYLDLQINGVLDRE--TIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSR-YFATVPEN  275 (483)
Q Consensus       199 F~i~~~~~~~g~~~~~l~~~~~LD~E--~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~~~-~~~~v~E~  275 (483)
                      |+-...  ..|.+.        +++.  +.....+...++|+-.   .+. . .| .. .-..+|.+.... ....|.-+
T Consensus       103 Fs~~~v--~~g~~~--------yvh~g~el~~~~~~~~~SDg~~---~S~-~-~i-~~-~~~~~~~~~~~~~~gL~v~~g  165 (442)
T KOG3597|consen  103 FSYEEV--EDGSLS--------YVHSGTELRESELQLRVSDGLL---VSE-R-AI-LK-VEATGPAPHLARNTGLKVLQG  165 (442)
T ss_pred             eEehHh--hcCcee--------EEecCcccccceEEEEeecceE---eee-e-EE-ec-ccCCCcceeeecccceEEccC
Confidence            332221  122221        1111  2457788899999763   222 1 11 11 112234332221 11222222


Q ss_pred             CCCCcEEEEEEEEeCCCCCccEEEEEEEe
Q psy8629         276 ATVGTSIFQVFATDADAGSNGEVEYSINR  304 (483)
Q Consensus       276 ~~~gt~v~~v~a~D~D~~~~~~i~y~i~~  304 (483)
                      +..--.-.-+.+.|.|.++...+.|.|..
T Consensus       166 S~~~IT~~~L~ved~d~~~d~~v~~~i~~  194 (442)
T KOG3597|consen  166 STAPITPSNLSVEDNDSSPDDEVRYDITP  194 (442)
T ss_pred             ccccccHhHceeecCCCCCCcEEEEEecC
Confidence            21111113488889987667789999964

>TIGR00845 caca sodium/calcium exchanger 1

Probab=91.94  E-value=15  Score=41.29  Aligned_cols=154  Identities=19%  Similarity=0.138  Sum_probs=80.8

Q ss_pred             CCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCC--ceEE-----ecccCCCceEEEEEE
Q psy8629         144 ENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNN--AFRL-----SSHREKDGVLYLDLQ  216 (483)
Q Consensus       144 vND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~--~F~i-----~~~~~~~g~~~~~l~  216 (483)
                      .||.++.|....-..+|.|+.  |+.-..|.-...|.+..-.+.|+..+|....  -|.-     .-..|++- -++.+.
T Consensus       395 ~dd~~s~i~Fe~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~PGEt~-KtItV~  471 (928)
T TIGR00845       395 ENDPVSKIFFEPGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQ-KEFRIG  471 (928)
T ss_pred             ccCCcceEEecCCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEECCCceE-EEEEEE
Confidence            566666666666678999986  4555555444435544456889887764321  1221     11111111 122243


Q ss_pred             eccCCCCCCCCEEEEEEEEEECC-------------CCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEE
Q psy8629         217 INGVLDRETIPEYSLVIEALDGG-------------SPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIF  283 (483)
Q Consensus       217 ~~~~LD~E~~~~~~l~v~a~D~g-------------~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~  283 (483)
                      +...=-+|....|.+.+.--..+             ...+......+|+|.| ||++|.|.-..-...|.|+.  |+.-.
T Consensus       472 IIDDdi~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlD-DD~aGIfsFe~~~~sV~Es~--G~vtv  548 (928)
T TIGR00845       472 IIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILD-DDHAGIFTFEEDVFHVSESI--GIMEV  548 (928)
T ss_pred             EccCCCCCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEec-CcccCcccccCceEEEEcCC--CEEEE
Confidence            33433466667777766543222             0112233456677777 78899877655567889974  55544


Q ss_pred             EEEEEeCCCCCccEEEEEEEe
Q psy8629         284 QVFATDADAGSNGEVEYSINR  304 (483)
Q Consensus       284 ~v~a~D~D~~~~~~i~y~i~~  304 (483)
                      +|.-+-.-.| .-.+.|...+
T Consensus       549 tV~RtsGa~G-~VtV~Y~T~d  568 (928)
T TIGR00845       549 KVLRTSGARG-TVIVPYRTVE  568 (928)
T ss_pred             EEEEcCCCCe-eEEEEEEeec
Confidence            4432211111 2345676543

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=89.08  E-value=2.1  Score=29.42  Aligned_cols=39  Identities=26%  Similarity=0.284  Sum_probs=30.5

Q ss_pred             CCCCCCcEEEeCCCcEEEEcccCCCC-CCCeeEEEEEEEECC
Q psy8629         383 TDDHPSWFQIDSKSGLITMKSNVDCE-TDPVPKLTVIATDNG  423 (483)
Q Consensus       383 ~~~~~~~F~id~~tG~i~~~~~lD~E-~~~~y~l~V~a~D~g  423 (483)
                      .+....+..+|+.+|.|.-.  .+.. ....|.++|.|+|..
T Consensus         9 ~~~LP~gLs~d~~tG~isGt--p~~~~~~G~y~~~vtatd~~   48 (49)
T PF05345_consen    9 GGGLPSGLSLDPSTGTISGT--PTSSVQPGTYTFTVTATDGS   48 (49)
T ss_pred             CCCCCCcEEEeCCCCEEEee--cCCCccccEEEEEEEEEcCC
Confidence            34677889999999999766  4444 346999999999974

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

>TIGR00845 caca sodium/calcium exchanger 1

Probab=83.46  E-value=20  Score=40.34  Aligned_cols=47  Identities=23%  Similarity=0.165  Sum_probs=28.8

Q ss_pred             cCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEe
Q psy8629         256 VNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINR  304 (483)
Q Consensus       256 vNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~  304 (483)
                      .||.++.|.-..-...|.|++  |++-.+|.-...|.+....+.|...+
T Consensus       395 ~dd~~s~i~Fe~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~D  441 (928)
T TIGR00845       395 ENDPVSKIFFEPGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTED  441 (928)
T ss_pred             ccCCcceEEecCCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccC
Confidence            455555554444456789984  77777776555455445567787643

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family

>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain

Probab=81.87  E-value=20  Score=30.59  Aligned_cols=69  Identities=29%  Similarity=0.353  Sum_probs=42.7

Q ss_pred             CceEEecccCCCceEEEEEEeccCCCCCC---CCEEEEEEEEEECCCCCeeeEEEEEEEEEecCCCCCeecCCceEEEec
Q psy8629         197 NAFRLSSHREKDGVLYLDLQINGVLDRET---IPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVP  273 (483)
Q Consensus       197 ~~F~i~~~~~~~g~~~~~l~~~~~LD~E~---~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~  273 (483)
                      ..|.|.-..  +|...  +.+.++||...   .-...|.|.|+|..+-  .+...+.|+|.|  | .|...... ..+|.
T Consensus        56 ~Vftvtl~~--~GsYt--ftL~~~lDH~~g~d~l~l~~~v~a~D~DGD--~s~~~l~VtI~D--D-~P~~~~~~-~~~V~  125 (137)
T TIGR03660        56 PVFTLTLNA--DGSYE--FTLEGPLDHAAGSDELTLNFPIIATDFDGD--TSSITLPVTIVD--D-VPTITDVD-ALTVD  125 (137)
T ss_pred             EEEEEEECC--CccEE--EEEcccccCCCCCceEEEeeeEEEEeCCCC--ccccEEEEEEEC--C-CCeecccc-ceEEe
Confidence            345554332  34332  66678887743   3367888999997663  334588888887  5 57664443 36777


Q ss_pred             CC
Q psy8629         274 EN  275 (483)
Q Consensus       274 E~  275 (483)
                      |+
T Consensus       126 E~  127 (137)
T TIGR03660       126 ED  127 (137)
T ss_pred             cc
Confidence            74

This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	483
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		2e-22
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		9e-14
1l3w_A	546	C-Cadherin Ectodomain Length = 546		2e-22
1l3w_A	546	C-Cadherin Ectodomain Length = 546		1e-13
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		2e-21
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		6e-09
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		2e-18
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		3e-13
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		2e-18
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		6e-13
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		1e-05
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		3e-13
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		2e-06
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		9e-04
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		5e-13
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		4e-06
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		5e-13
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		5e-07
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		2e-12
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		3e-06
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		3e-12
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		8e-06
2ee0_A	114	Solution Structures Of The Ca Domain Of Human Proto		4e-12
2ee0_A	114	Solution Structures Of The Ca Domain Of Human Proto		6e-05
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		6e-12
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		6e-04
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		1e-11
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		2e-11
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		3e-11
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		6e-11
3q2n_A	213	Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213		7e-10
3q2n_A	213	Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213		2e-06
2yst_A	119	Solution Structure Of The Third Cadherin Domain Fro		7e-10
1q1p_A	212	E-Cadherin Activation Length = 212		9e-10
1q1p_A	212	E-Cadherin Activation Length = 212		1e-06
3lng_A	215	Crystal Structure Of E-Cadherin Ec12 Aa Extension L		9e-10
3lng_A	215	Crystal Structure Of E-Cadherin Ec12 Aa Extension L		1e-06
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		9e-10
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		9e-09
3lne_A	213	Crystal Structure Of E-Cadherin Ec12 K14e Length =		1e-09
3lne_A	213	Crystal Structure Of E-Cadherin Ec12 K14e Length =		2e-06
3lnf_A	213	Crystal Structure Of E-Cadherin Ec12 K14ew2a Length		1e-09
3lnf_A	213	Crystal Structure Of E-Cadherin Ec12 K14ew2a Length		1e-06
3qrb_A	213	Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt		1e-09
3qrb_A	213	Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt		1e-06
3lnh_A	213	Crystal Structure Of E-Cadherin Ec12 W2a Length = 2		1e-09
3lnh_A	213	Crystal Structure Of E-Cadherin Ec12 W2a Length = 2		1e-06
2qvf_B	213	Mouse E-cadherin Domains 1,2 Length = 213		1e-09
2qvf_B	213	Mouse E-cadherin Domains 1,2 Length = 213		2e-06
3lni_A	213	Crystal Structure Of E-Cadherin Ec12 E89a Length =		1e-09
3lni_A	213	Crystal Structure Of E-Cadherin Ec12 E89a Length =		1e-06
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		2e-09
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		2e-09
3q2l_A	213	Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213		4e-09
3q2l_A	213	Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213		1e-06
3ppe_A	203	Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng		4e-08
1suh_A	146	Amino-Terminal Domain Of Epithelial Cadherin In The		5e-08
4apx_B	242	Crystal Structure Of Mouse Cadherin-23 Ec1-2 And Pr		7e-08
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		7e-07
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		3e-04
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		8e-07
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		2e-04
3ubf_A	316	Crystal Structure Of Drosophila N-Cadherin Ec1-3, I		1e-04

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 172/395 (43%), Gaps = 62/395 (15%)
Query: 104 YEPGEIRTKVPLDRETRSSYSLVAIPLSG------ENVRVVVRVIDENDNAPTFPSPFMS 157
           +E G +    PLDRE    Y L +  +S       E + + + VID+NDN P F      
Sbjct: 210 WETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFR 269
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQ---RYNIVSGNTNNAF-RLSSHREKDGVLYL 213
               E      +    +A D D  I +      Y+I+  +       L +   + GV+ L
Sbjct: 270 GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISL 329
Query: 214 DLQINGVLDRETIPEYSLVIEA--LDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFAT 271
              I   LDRE  PEY+L ++A  L+G    + G  I+ +T  D NDN PIF+   Y A 
Sbjct: 330 ---IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT--DANDNAPIFDPKTYTAL 384
Query: 272 VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI----DSKSGLIFVNKA 327
           VPEN  +G  + ++  TD D       + ++ + + ++ G FNI    +S  G++   K 
Sbjct: 385 VPENE-IGFEVQRLSVTDLDMPGTPAWQ-AVYKIRVNEGGFFNITTDPESNQGILTTAKG 442
Query: 328 LDFETKEVHDL------------------------------VPRFAVEISSFD--EIAEP 355
           LDFE ++ + L                               P F   +S  D  E    
Sbjct: 443 LDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSR 502
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
           G  +  + A D D+     ++Y +    +D   W  ++  +G++T   N+D E++ V   
Sbjct: 503 GEKIISLVAQDPDKQQIQKLSYFI---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNN 559
Query: 416 T----VIATDNGVPALSSSATVLVTIHDVNDNEPI 446
           T    ++ TD+GV   + + T+++ + DVNDN P+
Sbjct: 560 TYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 594

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 131/300 (43%), Gaps = 54/300 (18%)
Query: 221 LDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGT 280
           LDRE   +Y L   A+     P+   M + + + D NDN+P F Q  +  +V E    GT
Sbjct: 221 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 280
Query: 281 SIFQVFATDADA---GSNGEVEYSINRRQSDKD--GLFNIDSKSGLI-FVNKALDFETKE 334
            +  V ATD D      NG + YSI ++  ++    LF I+ ++G+I  +   LD E   
Sbjct: 281 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK-- 338
Query: 335 VHDLVPRFAVEISSFD----EIAEPGTSVFQISAFDQDEGINSVITYS--LREN------ 382
                P + + + + D     ++  G ++ QI+  + +  I    TY+  + EN      
Sbjct: 339 ----FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEV 394
Query: 383 -----TD----DHPSW-------------FQI----DSKSGLITMKSNVDCETDP--VPK 414
                TD      P+W             F I    +S  G++T    +D E     V +
Sbjct: 395 QRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQ 454
Query: 415 LTVI-ATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
           +TV  A    VP  +S+ATV VT+ DVN+  P F  +   V + E+  +G  I+  +  D
Sbjct: 455 ITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQD 513

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 172/395 (43%), Gaps = 62/395 (15%)
Query: 104 YEPGEIRTKVPLDRETRSSYSLVAIPLSG------ENVRVVVRVIDENDNAPTFPSPFMS 157
           +E G +    PLDRE    Y L +  +S       E + + + VID+NDN P F      
Sbjct: 61  WETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFR 120
Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQ---RYNIVSGNTNNAF-RLSSHREKDGVLYL 213
               E      +    +A D D  I +      Y+I+  +       L +   + GV+ L
Sbjct: 121 GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISL 180
Query: 214 DLQINGVLDRETIPEYSLVIEA--LDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFAT 271
              I   LDRE  PEY+L ++A  L+G    + G  I+ +T  D NDN PIF+   Y A 
Sbjct: 181 ---IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT--DANDNAPIFDPKTYTAL 235
Query: 272 VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI----DSKSGLIFVNKA 327
           VPEN  +G  + ++  TD D       + ++ + + ++ G FNI    +S  G++   K 
Sbjct: 236 VPENE-IGFEVQRLSVTDLDMPGTPAWQ-AVYKIRVNEGGFFNITTDPESNQGILTTAKG 293
Query: 328 LDFETKEVHDL------------------------------VPRFAVEISSFD--EIAEP 355
           LDFE ++ + L                               P F   +S  D  E    
Sbjct: 294 LDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSR 353
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
           G  +  + A D D+     ++Y +    +D   W  ++  +G++T   N+D E++ V   
Sbjct: 354 GEKIISLVAQDPDKQQIQKLSYFI---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNN 410
Query: 416 T----VIATDNGVPALSSSATVLVTIHDVNDNEPI 446
           T    ++ TD+GV   + + T+++ + DVNDN P+
Sbjct: 411 TYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 445

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 131/300 (43%), Gaps = 54/300 (18%)
Query: 221 LDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGT 280
           LDRE   +Y L   A+     P+   M + + + D NDN+P F Q  +  +V E    GT
Sbjct: 72  LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 131
Query: 281 SIFQVFATDADA---GSNGEVEYSINRRQSDKD--GLFNIDSKSGLI-FVNKALDFETKE 334
            +  V ATD D      NG + YSI ++  ++    LF I+ ++G+I  +   LD E   
Sbjct: 132 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK-- 189
Query: 335 VHDLVPRFAVEISSFD----EIAEPGTSVFQISAFDQDEGINSVITYS--LREN------ 382
                P + + + + D     ++  G ++ QI+  + +  I    TY+  + EN      
Sbjct: 190 ----FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEV 245
Query: 383 -----TD----DHPSW-------------FQI----DSKSGLITMKSNVDCETDP--VPK 414
                TD      P+W             F I    +S  G++T    +D E     V +
Sbjct: 246 QRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQ 305
Query: 415 LTVI-ATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
           +TV  A    VP  +S+ATV VT+ DVN+  P F  +   V + E+  +G  I+  +  D
Sbjct: 306 ITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQD 364

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 178/425 (41%), Gaps = 68/425 (16%)
Query: 107 GEIRTKVPLDRETRSSYSLVA--IPLSGENVR----VVVRVIDENDNAPTFPSPFMSIEF 160
           G++    PLDRE  + + L A  + ++G  V     +V+ VID NDN P F     +   
Sbjct: 58  GQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV 117
Query: 161 PENT-PRDVKRTLNAAKDRDLGIYNTQ-RYNIVSG--NTNNAFRLSSHREKDGVLYLDLQ 216
           PE + P     T+ A    D    N   RY I+S   +T +    + + E   ++     
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDII----T 173
Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRG---SMIVNVTIQDVNDNQPIFNQSRYFATVP 273
           +   LDRE + +Y+L+I+A D    P  G   +    +T+ DVNDN P F    ++  VP
Sbjct: 174 VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVP 233
Query: 274 ENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI----DSKSGLIFVNKALD 329
           EN  V   +  +  TD D         +      D  G F I    +S  GL+ V K +D
Sbjct: 234 ENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPID 292
Query: 330 FETKEVHDLV---------------------------------PRFA--VEISSFDEIAE 354
           FET  +  L                                  P FA   +I   +E   
Sbjct: 293 FETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQEEGLH 352
Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVP- 413
            GT +  ++A D D  +   I Y+      D  +W +ID  +G IT  + +D E+  V  
Sbjct: 353 AGTMLTTLTAQDPDRYMQQNIRYT---KLSDPANWLKIDPVNGQITTIAVLDRESPNVKN 409
Query: 414 ---KLTVIATDNGVPALSSSATVLVTIHDVNDNEP-IFDQSFYNVTIPENKPKGSCILKS 469
                T +A+DNG+P +S + T+ + + D+NDN P +  Q       PE     S  + +
Sbjct: 410 NIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPE---PNSINITA 466
Query: 470 IFYDI 474
           + YDI
Sbjct: 467 LDYDI 471

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 40/211 (18%)
Query: 290 ADAGSNGEVEYSINRRQSDK--DGLFNIDSKSGLIFVNKALDFE---------------- 331
           +D   N  + YS+    +D+   G+F I+  SG + V K LD E                
Sbjct: 26  SDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING 85
Query: 332 ------------TKEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDE--GINSVI 375
                         +++D  P F  ++   S  E ++PGT V  ++A D D+   +N ++
Sbjct: 86  NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGML 145
Query: 376 TYSLRENTDDHPS--WFQIDSKSG-LITMKSNVDCETDPVPKLTVIATD---NGVPALSS 429
            Y +       PS   F I++++G +IT+ + +D E      L + ATD   N    LS+
Sbjct: 146 RYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSN 205
Query: 430 SATVLVTIHDVNDNEPIFDQSFYNVTIPENK 460
           +AT ++T+ DVNDN P F    +   +PEN+
Sbjct: 206 TATAVITVTDVNDNPPEFTAMTFYGEVPENR 236

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 172/406 (42%), Gaps = 60/406 (14%)
Query: 72  IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
           ++ K   D+ET+  YS+         V V +   E G ++   PLDRE  + Y L   A+
Sbjct: 22  VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
             +GE V     +V+ V D+NDN P F          E       V +      D D+  
Sbjct: 82  SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 183 YNTQ-RYNIVSGNTNNAFRLSSHREKD-GVLYLDLQINGVLDRETIPEYSLVIEALDGGS 240
           YN    Y IVS +     +      +D GV+ +   +   LDRE+ P Y+LV++A D   
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV---LTSGLDRESYPTYTLVVQAADLQG 198
Query: 241 PPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEY 300
             L  +    +T++D+NDN P+FN S Y   VPEN  V   I  +  TD DA  N     
Sbjct: 199 EGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE-VNARIATLKVTDDDA-PNTPAWK 256
Query: 301 SINRRQSDKDGLFNI----DSKSGLIFVNKALDFETKEVH--------------DLVPRF 342
           ++    +D D  F +     +  G++   K LDFE K+ +               LVP  
Sbjct: 257 AVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPST 316
Query: 343 AVEISSFDEIAEP------------------GTSVFQISAFDQDEGINSVITYSLRENTD 384
           A       ++ E                   G  +   +A + D  ++  ITY +  +T 
Sbjct: 317 ATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDT- 375
Query: 385 DHPSWFQIDSKSGLITMKSNVDCE-TDPVPKLT----VIATDNGVP 425
              +W +I+ ++G I  ++ +D E  + V   T    +IATD+G P
Sbjct: 376 --ANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSP 419

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 38/202 (18%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGIN---SVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +N   + I Y++  
Sbjct: 93  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 DVNDNEPIFDQSFYNVTIPENK 460
           D+NDN P+F+ S Y   +PEN+
Sbjct: 213 DINDNAPVFNPSTYQGQVPENE 234

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 117/248 (47%), Gaps = 26/248 (10%)
Query: 107 GEIRTKVPLDRETRSSYSLVAIPLSGENVR-------VVVRVIDENDNAPTFPSPFMSIE 159
           G+I     LDRE ++ Y+L A  +  E  +        +++V D NDNAP F +      
Sbjct: 55  GDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHAT 114
Query: 160 FPENTPRDVKRTLNAAKDRDLGIYNTQR---YNIVSGNTNNAFRLSSHREKDGVLYLDLQ 216
            PE +      T   A D D  +Y       Y+I+ G    +    +   K  +  +D  
Sbjct: 115 VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMD-- 172
Query: 217 INGVLDRETIPEYSLVIEALD--GGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
                 RE   EY +VI+A D  G S  L G+  + VT+ DVNDN P F QS Y  +VPE
Sbjct: 173 ------REAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPE 226
Query: 275 NATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDS----KSGLIFVNKALDF 330
           +  +GT+I +V A D D G N +  Y I     D   LF I S    + G+I + K LDF
Sbjct: 227 DVVLGTAIGRVKANDQDIGENAQSSYDI--IDGDGTALFEITSDAQAQDGVIRLRKPLDF 284
Query: 331 ETKEVHDL 338
           ETK+ + L
Sbjct: 285 ETKKSYTL 292

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 39/238 (16%)
Query: 221 LDRETIPEYSLVIEALD-GGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVG 279
           LDRE   EY+L  +A+D   + PL       + +QD+NDN P F    Y ATVPE + +G
Sbjct: 63  LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG 122
Query: 280 TSIFQVFATDAD---AGSNGEVEYSINRRQSD----------KDGLFNID--SKSGLIFV 324
           TS+  V ATDAD    G++ ++ YSI   Q            K  L N+D  +K   + V
Sbjct: 123 TSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVV 182
Query: 325 NKALDF---------------ETKEVHDLVPRFAVEISSFD--EIAEPGTSVFQISAFDQ 367
            +A D                   +V+D  P+FA  +  F   E    GT++ ++ A DQ
Sbjct: 183 IQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQ 242
Query: 368 DEGINSVITYSLRENTDDHPSWFQIDS----KSGLITMKSNVDCETDPVPKLTVIATD 421
           D G N+  +Y + +   D  + F+I S    + G+I ++  +D ET     L V A +
Sbjct: 243 DIGENAQSSYDIIDG--DGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAAN 298

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 28/199 (14%)
Query: 292 AGSNGEVEYSINRRQSDKDGLFNID--SKSGLIFVNKALDFET--------------KEV 335
           +G      + IN    D   +  +D   K+      +A+DFET              +++
Sbjct: 40  SGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDI 99
Query: 336 HDLVPRF--AVEISSFDEIAEPGTSVFQISAFDQDE---GINSVITYSLRENTDDHPSWF 390
           +D  P F      ++  E++  GTSV  ++A D D+   G ++ + YS+ E       +F
Sbjct: 100 NDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ----PYF 155
Query: 391 QIDSKSGLI-TMKSNVDCETDPVPKLTVIATDNG--VPALSSSATVLVTIHDVNDNEPIF 447
            I+ ++ +I T   N+D E      + + A D G     LS + T+ VT+ DVNDN P F
Sbjct: 156 SIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKF 215
Query: 448 DQSFYNVTIPENKPKGSCI 466
            QS Y+ ++PE+   G+ I
Sbjct: 216 AQSLYHFSVPEDVVLGTAI 234

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 162 ENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVL 221
           E+TP     T   A+D D    N      VSG    A R  +     GV++L       L
Sbjct: 22  EDTPVGSSVTQLLARDMD----NDPLVFGVSGE--EASRFFAVEPDTGVVWL----RQPL 71
Query: 222 DRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTS 281
           DRET  E+++     D      R    VN+ + DVNDN P F+   Y   +PEN  VGT 
Sbjct: 72  DRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP 128
Query: 282 IFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDL 338
           IF V ATD D G+ G V YS           F IDS  G++ V + LD+E  + + L
Sbjct: 129 IFIVNATDPDLGAGGSVLYSFQ----PPSPFFAIDSARGIVTVIQELDYEVTQAYQL 181

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 96/210 (45%), Gaps = 42/210 (20%)
Query: 263 FNQSRYFAT---VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKS 319
           F  + +F T   + E+  VG+S+ Q+ A D D   N  + + ++  ++ +   F ++  +
Sbjct: 8   FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASR--FFAVEPDT 62
Query: 320 GLIFVNKALDFETK-------------------------EVHDLVPRFAVEISS--FDEI 352
           G++++ + LD ETK                         +V+D  P F  +  S    E 
Sbjct: 63  GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 122
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPS-WFQIDSKSGLITMKSNVDCETDP 411
              GT +F ++A D D G    + YS +      PS +F IDS  G++T+   +D E   
Sbjct: 123 TPVGTPIFIVNATDPDLGAGGSVLYSFQP-----PSPFFAIDSARGIVTVIQELDYEVTQ 177
Query: 412 VPKLTVIATD-NGVPALSSSATVLVTIHDV 440
             +LTV ATD +    LS+ A + + I D+
Sbjct: 178 AYQLTVNATDQDKTRPLSTLANLAIIITDL 207

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
           G+SV Q+ A D D   N  + + +  + ++   +F ++  +G++ ++  +D ET    + 
Sbjct: 27  GSSVTQLLARDMD---NDPLVFGV--SGEEASRFFAVEPDTGVVWLRQPLDRETKS--EF 79
Query: 416 TV---IATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL 467
           TV   ++   GV     +  V + + DVNDN P F    Y+V IPEN P G+ I 
Sbjct: 80  TVEFSVSDHQGV----ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIF 130

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 198 AFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVN 257
           A R  +     GV++L       LDRET  E+++     D      R    VN+ + DVN
Sbjct: 52  ASRFFAVEPDTGVVWL----RQPLDRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVN 104
Query: 258 DNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDS 317
           DN P F+   Y   +PEN  VGT IF V ATD D G+ G V YS           F IDS
Sbjct: 105 DNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQ----PPSPFFAIDS 160
Query: 318 KSGLIFVNKALDFETKEVHDL 338
             G++ V + LD+E  + + L
Sbjct: 161 ARGIVTVIQELDYEVTQAYQL 181

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 42/210 (20%)
Query: 263 FNQSRYFAT---VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKS 319
           F  + +F T   + E+  VG+S+ Q+ A D D   N  + + +   ++ +   F ++  +
Sbjct: 8   FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASR--FFAVEPDT 62
Query: 320 GLIFVNKALDFETK-------------------------EVHDLVPRFAVEISS--FDEI 352
           G++++ + LD ETK                         +V+D  P F  +  S    E 
Sbjct: 63  GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 122
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPS-WFQIDSKSGLITMKSNVDCETDP 411
              GT +F ++A D D G    + YS +      PS +F IDS  G++T+   +D E   
Sbjct: 123 TPVGTPIFIVNATDPDLGAGGSVLYSFQP-----PSPFFAIDSARGIVTVIQELDYEVTQ 177
Query: 412 VPKLTVIATD-NGVPALSSSATVLVTIHDV 440
             +LTV ATD +    LS+ A + + I D+
Sbjct: 178 AYQLTVNATDQDKTRPLSTLANLAIIITDL 207

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 162 ENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVL 221
           E+TP     T   A+D D    N      VSG    A R  +     GV++L       L
Sbjct: 21  EDTPVGSSVTQLLARDMD----NDPLVFGVSGE--EASRFFAVEPDTGVVWL----RQPL 70
Query: 222 DRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTS 281
           DRET  E+++     D      R    VN+ + DVNDN P F+   Y   +PEN  VGT 
Sbjct: 71  DRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP 127
Query: 282 IFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDL 338
           IF V ATD D G+ G V YS           F IDS  G++ V + LD+E  + + L
Sbjct: 128 IFIVNATDPDLGAGGSVLYSFQ----PPSPFFAIDSARGIVTVIQELDYEVTQAYQL 180

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 42/212 (19%)
Query: 263 FNQSRYFAT---VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKS 319
           F  + +F T   + E+  VG+S+ Q+ A D D   N  + + ++  ++ +   F ++  +
Sbjct: 7   FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASR--FFAVEPDT 61
Query: 320 GLIFVNKALDFETK-------------------------EVHDLVPRFAVEISS--FDEI 352
           G++++ + LD ETK                         +V+D  P F  +  S    E 
Sbjct: 62  GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 121
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPS-WFQIDSKSGLITMKSNVDCETDP 411
              GT +F ++A D D G    + YS +      PS +F IDS  G++T+   +D E   
Sbjct: 122 TPVGTPIFIVNATDPDLGAGGSVLYSFQP-----PSPFFAIDSARGIVTVIQELDYEVTQ 176
Query: 412 VPKLTVIATD-NGVPALSSSATVLVTIHDVND 442
             +LTV ATD +    LS+ A + + I D+ D
Sbjct: 177 AYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 162 ENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVL 221
           E+TP     T   A+D D    N      VSG    A R  +     GV++L       L
Sbjct: 22  EDTPVGSSVTQLLARDMD----NDPLVFGVSGE--EASRFFAVEPDTGVVWL----RQPL 71
Query: 222 DRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTS 281
           DRET  E+++     D      R    VN+ +  VNDN P F+   Y   +PEN  VGT 
Sbjct: 72  DRETKSEFTVEFSVSDHQGVITRK---VNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTP 128
Query: 282 IFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDL 338
           IF V ATD D G+ G V YS           F IDS  G++ V + LD+E  + + L
Sbjct: 129 IFIVNATDPDLGAGGSVLYSFQ----PPSPFFAIDSARGIVTVIQELDYEVTQAYQL 181

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 42/210 (20%)
Query: 263 FNQSRYFAT---VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKS 319
           F  + +F T   + E+  VG+S+ Q+ A D D   N  + + ++  ++ +   F ++  +
Sbjct: 8   FFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASR--FFAVEPDT 62
Query: 320 GLIFVNKALDFETKE-------------------------VHDLVPRFAVEISS--FDEI 352
           G++++ + LD ETK                          V+D  P F  +  S    E 
Sbjct: 63  GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPEN 122
Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPS-WFQIDSKSGLITMKSNVDCETDP 411
              GT +F ++A D D G    + YS +      PS +F IDS  G++T+   +D E   
Sbjct: 123 TPVGTPIFIVNATDPDLGAGGSVLYSFQP-----PSPFFAIDSARGIVTVIQELDYEVTQ 177
Query: 412 VPKLTVIATD-NGVPALSSSATVLVTIHDV 440
             +LTV ATD +    LS+ A + + I D+
Sbjct: 178 AYQLTVNATDQDKTRPLSTLANLAIIITDL 207

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 78/134 (58%), Gaps = 15/134 (11%)
Query: 214 DLQINGVLDRETIPEYSLVIEALD--GGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFAT 271
           D+Q    LDRE  P Y L  +A++   G P    S  + + I D+NDN+PIF +  Y AT
Sbjct: 56  DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFI-IKIHDINDNEPIFTKDVYTAT 114
Query: 272 VPENATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSDKDGLFNIDSKSGLI---FVN 325
           VPE A VGT + QV ATDAD    G++ +V YSI + Q      F+++S++G+I    +N
Sbjct: 115 VPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP----YFSVESETGIIKTALLN 170
Query: 326 KALDFETKEVHDLV 339
             +D E +E + +V
Sbjct: 171 --MDRENREQYQVV 182

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 366 DQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATD--NG 423
           DQD G  S + Y L  + D     F I+  +G I     +D E  PV  L   A +   G
Sbjct: 27  DQDRGDGS-LKYIL--SGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTG 83
Query: 424 VPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
            P +   +  ++ IHD+NDNEPIF +  Y  T+PE    G+ +++
Sbjct: 84  RP-VEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQ 127

>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQS-DKDGLFNI 315
           NDN+P+F + +    +PENA VGTS+ Q+ ATDAD GSN E+ Y    + +     LF +
Sbjct: 8   NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 316 DSKSGLIFVNKALDFETKEVHDL 338
           ++ +GLI V ++LD E   +H +
Sbjct: 68  NNTTGLITVQRSLDREETAIHKV 90

>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTD-DHPSWFQIDSKSGLITMKSNVDCET 409
           E A  GTSV Q+ A D D G N+ I Y             F +++ +GLIT++ ++D E 
Sbjct: 25  ENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREE 84
Query: 410 DPVPKLTVIATD-NGVPALSSSATVLVTIHDVN 441
             + K+TV+A+D +  PA    ATV + + DVN
Sbjct: 85  TAIHKVTVLASDGSSTPA---RATVTINVTDVN 114

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 158 IEFPENT----PRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYL 213
           I  PEN     PRDV + +++  DR  G         V  +    FR++ +         
Sbjct: 8   ILIPENQRQPFPRDVGKVVDS--DRPEGSKFRLTGKGVDQDPKGTFRINENTGS------ 59
Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVP 273
            + +   LDRETI  Y L +E  D     L G + + V + D NDN+PIF +  Y   V 
Sbjct: 60  -VSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVM 118
Query: 274 ENATVGTSIFQVFATDAD--AGSNGEVEYSINRRQSDKDG--LFNIDSKSGLI--FVNKA 327
           E +  GT++ ++ A DAD  A  N  + Y+I ++  DK    +F ID + G I   V+ A
Sbjct: 119 EGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPA 178
Query: 328 -LDFETKE 334
            LD ET E
Sbjct: 179 LLDRETLE 186

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 385 DHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNE 444
           D    F+I+  +G +++   +D ET    +L V  TD     L     + V + D NDN 
Sbjct: 46  DPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNR 105
Query: 445 PIFDQSFYNVTIPENKPKGSCILKSIFYD 473
           PIF +  Y   + E  P G+ +++   +D
Sbjct: 106 PIFREGPYIGHVMEGSPTGTTVMRMTAFD 134

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 17/162 (10%)
Query: 189 NIVSGNTNNAFRLSSHREKDGVLYL------DLQINGVLDRETIPEYSLVIEALDGGS-P 241
           +I SG+ N  + LS   E  G +++      ++     LDRE   +Y+L+ +A+D  +  
Sbjct: 28  DIDSGDGNIKYILSG--EGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNR 85
Query: 242 PLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDAD---AGSNGEV 298
           PL       V +QD+NDN P F    Y A VPE + VGTS+ QV A+DAD    G++ ++
Sbjct: 86  PLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKL 145
Query: 299 EYSINRRQSDKDGLFNIDSKSGLIFVN-KALDFETKEVHDLV 339
            YSI   Q      F++++++G+I      +D E KE + +V
Sbjct: 146 VYSILEGQP----YFSVEAQTGIIRTALPNMDREAKEEYHVV 183

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 143/353 (40%), Gaps = 81/353 (22%)
Query: 133 ENVRVVVRVIDENDNAPTF---PSPFMSI---EFPENTPRDVKRTLNAAKDRDLGIYNTQ 186
           +N RV++ V D ND  P F   P P  ++     P NTP     TL A   RD    +  
Sbjct: 93  DNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP---VFTLQA---RDPDTDHNI 146
Query: 187 RYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDG-------- 238
            Y IV   T   F +    E+ GV+    +  G    +   EY L ++A D         
Sbjct: 147 HYFIVRDRTGGRFEVD---ERSGVV----RTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 199
Query: 239 --GSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNG 296
              +P  R S++            P F    Y A +PEN    + I  +    A + ++ 
Sbjct: 200 FQSTPEERLSIVGG-------KRAPQFYMPSYEAEIPENQKKDSDIISI---KAKSFADR 249
Query: 297 EVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFE------------------------- 331
           E+ Y++ + Q    G FNI   SG++ + K LDFE                         
Sbjct: 250 EIRYTL-KAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSV 308
Query: 332 -----TKEVHDLVPRFAV---EISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENT 383
                  +V+D  P+F +   +  + DE    GTS+ ++ A D D G N+ I Y +   +
Sbjct: 309 DLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV---S 365
Query: 384 DDHPSWFQIDSKSGLITMKSNVDCE-TDPVPKLTVIATDNGVPALSSSATVLV 435
           DDH   F +DS +G+I     +D +  +   +  V A D G P  S  ATV V
Sbjct: 366 DDH---FAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRV 414

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 14/206 (6%)
Query: 72  IRTKVPLDRETRSSYSLVAIPLSGENVRV-VSFYEPGEIRTKVPLDRETRSSYSLV--AI 128
           ++ K   D+ET+  YS+         V V +   E G ++   PLDRE  + Y L   A+
Sbjct: 24  VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 83
Query: 129 PLSGENVR----VVVRVIDENDNAPTFPSPFMSIEFPENT--PRDVKRTLNAAKDRDLGI 182
             +GE V     +V+ V D+NDN P F          E       V +      D D+  
Sbjct: 84  SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 143
Query: 183 YNTQ-RYNIVSGNTNNAFRLSSHREKD-GVLYLDLQINGVLDRETIPEYSLVIEALDGGS 240
           YN    Y IVS +     +      +D GV+ +   +   LDRE+ P Y+LV++A D   
Sbjct: 144 YNAAIAYTIVSQDPELPHKNMFTVNRDTGVISV---LTSGLDRESYPTYTLVVQAADLQG 200
Query: 241 PPLRGSMIVNVTIQDVNDNQPIFNQS 266
             L  +    +T++D+NDN P+FN S
Sbjct: 201 EGLSTTAKAVITVKDINDNAPVFNPS 226

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 38/192 (19%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 35  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGIN---SVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +N   + I Y++  
Sbjct: 95  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 155 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 214
Query: 439 DVNDNEPIFDQS 450
           D+NDN P+F+ S
Sbjct: 215 DINDNAPVFNPS 226

>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFVNKA-L 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V+ + L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194

>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +   N+ I Y++  
Sbjct: 93  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLITM-KSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I++  S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
           D
Sbjct: 213 D 213

>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human Protocadherin 7 Length = 119

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 336 HDLVPRFAVEISSFD--EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQID 393
           +D  PRF   +   D  E + PGT + Q+ A D D G+N  I Y     T+      ++D
Sbjct: 8   NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 394 SKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEP 445
             SG +++   +D E     + TV+A D G P  +  ATV++ I D NDN P
Sbjct: 68  ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 59  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 118
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    L
Sbjct: 119 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 178
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 179 DRESYPTYTLVVQAA 193

>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 32  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 91
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +   N+ I Y++  
Sbjct: 92  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 151
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 152 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 211
Query: 439 D 439
           D
Sbjct: 212 D 212

>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 62  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    L
Sbjct: 122 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 181
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 182 DRESYPTYTLVVQAA 196

>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 35  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +   N+ I Y++  
Sbjct: 95  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 155 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 214
Query: 439 D 439
           D
Sbjct: 215 D 215

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 61  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 120
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    L
Sbjct: 121 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 180
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 181 DRESYPTYTLVVQAA 195

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 38/185 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 34  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 93
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGIN---SVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +N   + I Y++  
Sbjct: 94  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 153
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 154 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 213
Query: 439 DVNDN 443
           D+NDN
Sbjct: 214 DINDN 218

>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194

>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +   N+ I Y++  
Sbjct: 93  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
           D
Sbjct: 213 D 213

>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194

>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +   N+ I Y++  
Sbjct: 93  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
           D
Sbjct: 213 D 213

>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194

>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +   N+ I Y++  
Sbjct: 93  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
           D
Sbjct: 213 D 213

>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194

>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +   N+ I Y++  
Sbjct: 93  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
           D
Sbjct: 213 D 213

>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194

>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +   N+ I Y++  
Sbjct: 93  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
           D
Sbjct: 213 D 213

>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194

>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +   N+ I Y++  
Sbjct: 93  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
           D
Sbjct: 213 D 213

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 193 GNTNNAFRLSSH---REKDGVLYL-----DLQINGVLDRETIPEYSLVIEALDGGSPPLR 244
           G     FRLS     ++  G+  +     D+ +   LDRE I  Y L +E  D     + 
Sbjct: 29  GTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIID 88
Query: 245 GSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGS--NGEVEYSI 302
           G + +++++ D NDN+P+F +  Y   V E +  GT++ ++ A DAD  S  N  + Y+I
Sbjct: 89  GPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNI 148
Query: 303 NRRQSDKDG--LFNIDSKSGLIFVNKA---LDFETKEVHDLVPRFAVEISSFD 350
            ++   K    +F ID + G I    +   LD ET E     P++ + I + D
Sbjct: 149 LKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETME----TPKYELVIEAKD 197

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I  Y+L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 60  LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVME 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSI---NRRQSDKDGLFNIDSKSGLI-FVNKA 327
            A  GTS+ +V ATDAD      N  + Y+I   +    DK+ +F I+  +G+I  V   
Sbjct: 120 GALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKN-MFTINRNTGVISVVTTG 178
Query: 328 LDFETKEVHDLVPRFA 343
           LD E+   + LV + A
Sbjct: 179 LDRESFPTYTLVVQAA 194

>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A       +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 60  LKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 275 NATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSD--KDGLFNIDSKSGLIFV-NKAL 328
            A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 329 DFETKEVHDLVPRFA 343
           D E+   + LV + A
Sbjct: 180 DRESYPTYTLVVQAA 194

>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 297 EVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALDFET---------------------- 332
           +V YSI  + +DK   G+F I+ ++G + V + LD E                       
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPM 92
Query: 333 ------KEVHDLVPRFAVEI--SSFDEIAEPGTSVFQISAFDQDEGI---NSVITYSLRE 381
                  + +D  P F  E+   S  E A PGTSV ++SA D D+ +   N+ I Y++  
Sbjct: 93  EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 382 NTDD--HPSWFQIDSKSGLIT-MKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIH 438
              +  H + F ++  +G+I+ + S +D E+ P   L V A D     LS++A  ++T+ 
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 439 D 439
           D
Sbjct: 213 D 213

>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 18/130 (13%)
Query: 221 LDRETIPEYSLVIEALDGGS-----PPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPEN 275
           LDRE   EY L    +D  +     PP +   I+ V+  D+NDN PIF Q  +  +VPE 
Sbjct: 61  LDREKKAEYELTAHIIDRRNNRSLEPPSK--FIIKVS--DINDNAPIFVQKIFNGSVPEM 116
Query: 276 ATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA-LDFE 331
           + +GTS+ +V A DAD      +  V Y I +        F +D  SG+IF  +A LD E
Sbjct: 117 SRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE----YFTVDD-SGVIFTARADLDRE 171
Query: 332 TKEVHDLVPR 341
           ++  ++++ +
Sbjct: 172 SQSAYEIIVK 181

>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The Calcium Bound State, Nmr, 20 Structures Length = 146

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L++   LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V E
Sbjct: 62  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
Query: 275 NATVGTSIFQVFATDAD 291
            A  GTS+ +V ATDAD
Sbjct: 122 GAVPGTSVMKVSATDAD 138

>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And Protocadherin-15 Ec1-2 Form I Length = 242

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 249 VNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVF-----ATDADAGSNGEVEYSIN 303
           V + ++D NDN P F    Y+ATV E   VGT+IF  F     ATD D G NG++EY I 
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ 172
Query: 304 RRQSD--KDGLFNIDSK-SGLIFVNKALDFETK 333
               D   +  F I    +G + + K L++E K
Sbjct: 173 YNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDK 205

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L +   LDRE I  + L   A+D     +   + + + + D+NDN+P F    +  +VPE
Sbjct: 60  LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
Query: 275 NATVGTSIFQVFATDAD--AGSNGEVEYSINRR--QSDKDGLFNIDSKSG-LIFVNKALD 329
            +  GT +  V A DAD     NG + Y I  +   +    +F I++++G +I V   LD
Sbjct: 120 GSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLD 179
Query: 330 FETKEVHDLV 339
            E  + + L+
Sbjct: 180 REKVQQYTLI 189

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 41/208 (19%)
Query: 272 VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDK--DGLFNIDSKSGLIFVNKALD 329
           +PEN+  G    ++    +D   N  + YS+    +D+   G+F I+  SG + V K LD
Sbjct: 9   LPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 330 FE----------------------------TKEVHDLVPRFAVEI--SSFDEIAEPGTSV 359
            E                              +++D  P F  ++   S  E ++PGT V
Sbjct: 68  RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 360 FQISAFDQDE--GINSVITYSLRENTDDHPS--WFQIDSKSG-LITMKSNVDCETDPVPK 414
             ++A D D+   +N ++ Y +       PS   F I++++G +IT+ + +D E      
Sbjct: 128 MTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 415 LTVIATD---NGVPALSSSATVLVTIHD 439
           L + ATD   N    LS++AT ++T+ D
Sbjct: 188 LIIQATDMEGNPTYGLSNTATAVITVTD 215

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
           L +   LDRE I  + L   A+D     +   + + + + D+NDN+P F    +  +VPE
Sbjct: 60  LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
Query: 275 NATVGTSIFQVFATDAD--AGSNGEVEYSINRR--QSDKDGLFNIDSKSG-LIFVNKALD 329
            +  GT +  V A DAD     NG + Y I  +   +    +F I++++G +I V   LD
Sbjct: 120 GSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLD 179
Query: 330 FETKEVHDLV 339
            E  + + L+
Sbjct: 180 REKVQQYTLI 189

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 41/208 (19%)
Query: 272 VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDK--DGLFNIDSKSGLIFVNKALD 329
           +PEN+  G    ++    +D   N  + YS+    +D+   G+F I+  SG + V K LD
Sbjct: 9   LPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 330 FE----------------------------TKEVHDLVPRFAVEI--SSFDEIAEPGTSV 359
            E                              +++D  P F  ++   S  E ++PGT V
Sbjct: 68  RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 360 FQISAFDQDE--GINSVITYSLRENTDDHPS--WFQIDSKSG-LITMKSNVDCETDPVPK 414
             ++A D D+   +N ++ Y +       PS   F I++++G +IT+ + +D E      
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 415 LTVIATD---NGVPALSSSATVLVTIHD 439
           L + ATD   N    LS++AT ++T+ D
Sbjct: 188 LIIQATDMEGNPTYGLSNTATAVITVTD 215

>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I Length = 316

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 40/215 (18%)
Query: 133 ENVRVVVRVIDENDNAPTF---PSPFMSI---EFPENTPRDVKRTLNAAKDRDLGIYNTQ 186
           +N RV++ V D ND  P F   P P  ++     P NTP     TL A   RD    +  
Sbjct: 88  DNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP---VFTLQA---RDPDTDHNI 141
Query: 187 RYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDG-------- 238
            Y IV   T   F +    E+ GV+    +  G    +   EY L ++A D         
Sbjct: 142 HYFIVRDRTGGRFEVD---ERSGVV----RTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 194
Query: 239 --GSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNG 296
              +P  R S++            P F    Y A +PEN    + I  +    A + ++ 
Sbjct: 195 FQSTPEERLSIVGG-------KRAPQFYMPSYEAEIPENQKKDSDIISI---KAKSFADR 244
Query: 297 EVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFE 331
           E+ Y++ + Q    G FNI   SG++ + K LDFE
Sbjct: 245 EIRYTL-KAQGQGAGTFNIGPTSGIVKLAKELDFE 278

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	483
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	9e-87
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-72
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	3e-70
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	8e-24
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	7e-84
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	4e-72
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	1e-69
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	4e-82
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-71
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-68
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-59
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	4e-44
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	6e-09
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-81
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-79
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-67
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	2e-25
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	2e-74
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	1e-72
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	5e-64
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	8e-59
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	4e-40
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	1e-25
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	2e-22
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	3e-06
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	2e-59
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	5e-55
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	2e-48
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	4e-23
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	8e-55
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	5e-51
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	9e-30
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	7e-27
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	3e-48
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	3e-40
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	5e-31
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	1e-28
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	6e-05
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	6e-48
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	2e-36
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	9e-28
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	6e-27
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	3e-04
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	4e-47
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	6e-34
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	6e-29
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	1e-24
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	1e-46
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	3e-41
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	4e-32
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	6e-28
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	3e-07
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	3e-46
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	1e-38
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	2e-31
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	2e-25
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	8e-05
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	3e-45
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	1e-33
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	2e-26
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	2e-23
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	4e-44
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	2e-33
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	3e-32
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	4e-19
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	2e-10
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	5e-34
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	3e-21
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	1e-15
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	5e-10
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	3e-33
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	1e-31
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	5e-21
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	7e-10
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	6e-08
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	4e-25
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	3e-18
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	2e-15
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	2e-10
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	2e-23
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	2e-16
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	7e-14
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	9e-11
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	5e-17
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	8e-15
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	6e-14
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	3e-06
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	4e-04
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	1e-16
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	8e-16
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	5e-12
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	1e-04
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	2e-04
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	1e-15
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	3e-13
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	7e-13
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	7e-05
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	2e-15
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	7e-15
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	2e-14
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	4e-05
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	8e-04
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-14
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-12
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	1e-10
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	1e-05
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	4e-04
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	5e-12
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	6e-11
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	1e-10
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	6e-04

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  275 bits (706), Expect = 9e-87
 Identities = 106/412 (25%), Positives = 169/412 (41%), Gaps = 71/412 (17%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
           G ++   PLDRE  + Y L +         +    + +V+ V D+NDN P F        
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDP-MEIVITVTDQNDNRPEFTQEVFEGS 116

Query: 160 FPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGN----TNNAFRLSSHREKDGVLY 212
             E           +A D D  +   N    Y IVS +      N F ++      GV+ 
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNR---DTGVIS 173

Query: 213 LDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATV 272
           +   +   LDRE+ P Y+LV++A D     L  +    +T++D+NDN P+FN S Y   V
Sbjct: 174 V---LTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV 230

Query: 273 PENATVGTSIFQVFATDADAGSNGEVE--YSINRRQSDKDGLFNI----DSKSGLIFVNK 326
           PEN  V   I  +  TD DA +    +  Y++    +D D  F +     +  G++   K
Sbjct: 231 PENE-VNARIATLKVTDDDAPNTPAWKAVYTV---VNDPDQQFVVVTDPTTNDGILKTAK 286

Query: 327 ALDFETKEVHDLV------------------------------PRF--AVEISSFDEIAE 354
            LDFE K+ + L                               P F  A       E   
Sbjct: 287 GLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIFMPAERRVEVPEDFG 346

Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPK 414
            G  +   +A + D  ++  ITY +  +T    +W +I+ ++G I  ++ +D E     K
Sbjct: 347 VGQEITSYTAREPDTFMDQKITYRIWRDTA---NWLEINPETGAIFTRAEMDREDAEHVK 403

Query: 415 -----LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKP 461
                  +IATD+G P  + + T+L+ + DVNDN PI +           +P
Sbjct: 404 NSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQP 455

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  237 bits (608), Expect = 2e-72
 Identities = 91/480 (18%), Positives = 148/480 (30%), Gaps = 99/480 (20%)

Query: 23  EISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRET 82
            ++EG   GT V  +                   SA D D  +      I          
Sbjct: 116 SVAEGAVPGTSVMKV-------------------SATDADDDVNTYNAAIA--------- 147

Query: 83  RSSYSLVAIPLSGENVRVVSFY-----EPGEIRT-KVPLDRETRSSYSLV-------AIP 129
              Y++    +S +             + G I      LDRE+  +Y+LV          
Sbjct: 148 ---YTI----VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG 200

Query: 130 LSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQR-- 187
           LS    + V+ V D NDNAP F       + PEN       TL    D D       +  
Sbjct: 201 LSTT-AKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKV-TDDDAPNTPAWKAV 258

Query: 188 YNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGG---SPPLR 244
           Y +V+        ++     DG+L         LD E   +Y L +   +        + 
Sbjct: 259 YTVVNDPDQQFVVVTDPTTNDGILKTA----KGLDFEAKQQYILHVRVENEEPFEGSLVP 314

Query: 245 GSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINR 304
            +  V V + DVN+  PIF  +     VPE+  VG  I    A + D   + ++ Y I R
Sbjct: 315 STATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWR 373

Query: 305 RQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFD-------------- 350
              D      I+ ++G IF    +D E  E H     +   I + D              
Sbjct: 374 ---DTANWLEINPETGAIFTRAEMDREDAE-HVKNSTYVALIIATDDGSPIATGTGTLLL 429

Query: 351 -----------------EIAEPGTSVFQISAFDQDEGINS-VITYSLRENTDDHPSWFQI 392
                            +  +       I+  D D   N+   T  L      + +  + 
Sbjct: 430 VLLDVNDNAPIPEPRNMQFCQRNPQPHIITILDPDLPPNTSPFTAELTHGASVNWT-IEY 488

Query: 393 DSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFY 452
           +  +    +            K+ +   DN         T+ V + D         ++ +
Sbjct: 489 NDAAQESLILQPRKDLEIGEYKIHLKLADNQNK--DQVTTLDVHVCDCEGTVNNCMKAHH 546

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  232 bits (593), Expect = 3e-70
 Identities = 80/360 (22%), Positives = 130/360 (36%), Gaps = 62/360 (17%)

Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNT----NNAFRLSSHREKDGVLYL 213
           I  PEN   +  + L      +        Y+I            F +     + G L +
Sbjct: 7   ISCPENEKGEFPKNL-VQIKSNRDKETKVFYSITGQGADKPPVGVFIIE---RETGWLKV 62

Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVP 273
                  LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V 
Sbjct: 63  ----TQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118

Query: 274 ENATVGTSIFQVFATDADAG---SNGEVEYSINRRQSDK--DGLFNIDSKSGLIFV-NKA 327
           E A  GTS+ +V ATDAD      N  + Y+I  +  +     +F ++  +G+I V    
Sbjct: 119 EGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG 178

Query: 328 LDFETKEVHDLV----------------------------PRFAVEISSFDEIAE--PGT 357
           LD E+   + LV                            P F    +   ++ E     
Sbjct: 179 LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS-TYQGQVPENEVNA 237

Query: 358 SVFQISAFDQDEGIN--SVITYSLRENTDDHPSWFQI----DSKSGLITMKSNVDCETDP 411
            +  +   D D          Y++  + D     F +     +  G++     +D E   
Sbjct: 238 RIATLKVTDDDAPNTPAWKAVYTVVNDPDQQ---FVVVTDPTTNDGILKTAKGLDFEAKQ 294

Query: 412 VPKLTVIATDNG---VPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
              L V   +        + S+ATV V + DVN+  PIF  +   V +PE+   G  I  
Sbjct: 295 QYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITS 353

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  103 bits (259), Expect = 8e-24
 Identities = 42/262 (16%), Positives = 76/262 (29%), Gaps = 69/262 (26%)

Query: 22  LEISEGVPVGTRVGFIG--DGFVGDSGPP----YLIVPVPGSAVDTDLSIEQNTGEIRTK 75
           +E+ E   VG  +      +    D+       Y I     + +     I   TG I T+
Sbjct: 339 VEVPEDFGVGQEITSYTAREP---DTFMDQKITYRIWRDTANWL----EINPETGAIFTR 391

Query: 76  VPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSL--VAI----- 128
             +DRE                                  +    S+Y    +A      
Sbjct: 392 AEMDRED--------------------------------AEHVKNSTYVALIIATDDGSP 419

Query: 129 PLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQR- 187
             +G    +++ ++D NDNAP      M        P  +        D DL   NT   
Sbjct: 420 IATG-TGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHII-----TILDPDLP-PNTSPF 472

Query: 188 -YNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGS 246
              +  G + N + +  +      L L            I EY + ++  D  +      
Sbjct: 473 TAELTHGASVN-WTIEYNDAAQESLIL-----QPRKDLEIGEYKIHLKLADNQNKDQ--V 524

Query: 247 MIVNVTIQDVNDNQPIFNQSRY 268
             ++V + D         ++ +
Sbjct: 525 TTLDVHVCDCEGTVNNCMKAHH 546

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  268 bits (686), Expect = 7e-84
 Identities = 104/413 (25%), Positives = 168/413 (40%), Gaps = 74/413 (17%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
           G +    PLDRE    Y L +        P+    + + + VID+NDN P F        
Sbjct: 64  GWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEP-MEITINVIDQNDNRPKFTQDVFRGS 122

Query: 160 FPENTPRD--VKRTLNAAKDRDLGIY--NTQ-RYNIVSGN----TNNAFRLSSHREKDGV 210
             E       V   ++A  D D  I   N    Y+I+  +      N F ++    + GV
Sbjct: 123 VREGVQPGTQVM-AVSA-TDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINR---ETGV 177

Query: 211 LYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFA 270
           + L   I   LDRE  PEY+L ++A D     L       + I D NDN PIF+   Y A
Sbjct: 178 ISL---IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTA 234

Query: 271 TVPENATVGTSIFQVFATDADAGSNG--EVEYSINRRQSDKDGLFNI----DSKSGLIFV 324
            VPEN  +G  + ++  TD D       +  Y I   + ++ G FNI    +S  G++  
Sbjct: 235 LVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKI---RVNEGGFFNITTDPESNQGILTT 290

Query: 325 NKALDFETKEVHDLV------------------------------PRF--AVEISSFDEI 352
            K LDFE ++ + L                               P F  AV      E 
Sbjct: 291 AKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSED 350

Query: 353 AEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPV 412
              G  +  + A D D+     ++Y +  +      W  ++  +G++T   N+D E++ V
Sbjct: 351 LSRGEKIISLVAQDPDKQQIQKLSYFIGNDPA---RWLTVNKDNGIVTGNGNLDRESEYV 407

Query: 413 P----KLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKP 461
                 + ++ TD+GV   + + T+++ + DVNDN P+     + +     +P
Sbjct: 408 KNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP 460

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  237 bits (606), Expect = 4e-72
 Identities = 94/471 (19%), Positives = 151/471 (32%), Gaps = 93/471 (19%)

Query: 23  EISEGVPVGTRVGFIG-----DGFVGDSGP-PYLIVP-VPGSAVDTDLSIEQNTGEIRTK 75
            + EGV  GT+V  +      D     +G   Y I+   P   +    +I + TG I   
Sbjct: 122 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI 181

Query: 76  V-PLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGEN 134
              LDRE    Y+L         V+                D E           LS E 
Sbjct: 182 GTGLDREKFPEYTLT--------VQAT--------------DLEGA--------GLSVE- 210

Query: 135 VRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDL-GIYNTQRYNIVSG 193
            + ++++ D NDNAP F     +   PEN      + L+   D D+ G    Q    +  
Sbjct: 211 GKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSV-TDLDMPGTPAWQAVYKIRV 269

Query: 194 NTNNAFRLSSHREK-DGVLYLDLQINGVLDRETIPEYSLVIEALDG---GSPPLRGSMIV 249
           N    F +++  E   G+L         LD E   +Y L I   +      P    +  V
Sbjct: 270 NEGGFFNITTDPESNQGILTTA----KGLDFELRKQYVLQITVENAEPFSVPLPTSTATV 325

Query: 250 NVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDK 309
            VT++DVN+  P F  +     V E+ + G  I  + A D D     ++ Y I    +D 
Sbjct: 326 TVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI---GNDP 381

Query: 310 DGLFNIDSKSGLIFVNKALDFETKEVH--------------------------------D 337
                ++  +G++  N  LD E++ V                                 D
Sbjct: 382 ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVND 441

Query: 338 LVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINS-VITYSLRENTDDHPSWFQIDSKS 396
             P  +  + +      P   V  ++  D D   N+     SL   +D   +W       
Sbjct: 442 NGPVPSPRVFTM-CDQNPEPQV--LTISDADIPPNTYPYKVSLSHGSD--LTWKAELDSK 496

Query: 397 GLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIF 447
           G   + S           + V+ +D       +     V            
Sbjct: 497 GTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVC--SCEGKAIKC 545

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  230 bits (588), Expect = 1e-69
 Identities = 84/370 (22%), Positives = 137/370 (37%), Gaps = 64/370 (17%)

Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNT----NNAFRLSS 203
              +  P + +   E  P             +   +N   Y+I            FR+  
Sbjct: 5   HHDWVIPPIKVSENERGP---FPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIE- 60

Query: 204 HREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIF 263
              + G + +       LDRE   +Y L   A+     P+   M + + + D NDN+P F
Sbjct: 61  --WETGWMLV----TRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKF 114

Query: 264 NQSRYFATVPENATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSDK--DGLFNIDSK 318
            Q  +  +V E    GT +  V ATD D      NG + YSI ++  ++    LF I+ +
Sbjct: 115 TQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRE 174

Query: 319 SGLIFV-NKALDFETKEVHDLV----------------------------PRFAVEISSF 349
           +G+I +    LD E    + L                             P F  + +  
Sbjct: 175 TGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPK-TYT 233

Query: 350 DEIAE--PGTSVFQISAFDQDEGIN--SVITYSLRENTDDHPSWFQI----DSKSGLITM 401
             + E   G  V ++S  D D          Y +R N      +F I    +S  G++T 
Sbjct: 234 ALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGG---FFNITTDPESNQGILTT 290

Query: 402 KSNVDCETDPVPKLTVIATD---NGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPE 458
              +D E      L +   +     VP  +S+ATV VT+ DVN+  P F  +   V + E
Sbjct: 291 AKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSE 349

Query: 459 NKPKGSCILK 468
           +  +G  I+ 
Sbjct: 350 DLSRGEKIIS 359

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  271 bits (694), Expect = 4e-82
 Identities = 103/411 (25%), Positives = 168/411 (40%), Gaps = 70/411 (17%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
           G +    PLDRE    Y L +        P+    + + + VID+NDN P F        
Sbjct: 213 GWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEP-MEITINVIDQNDNRPKFTQDVFRGS 271

Query: 160 FPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGN----TNNAFRLSSHREKDGVLY 212
             E      +    +A D D  I   N    Y+I+  +      N F ++    + GV+ 
Sbjct: 272 VREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINR---ETGVIS 328

Query: 213 LDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATV 272
           L   I   LDRE  PEY+L ++A D     L       + I D NDN PIF+   Y A V
Sbjct: 329 L---IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALV 385

Query: 273 PENATVGTSIFQVFATDADAGSNG--EVEYSINRRQSDKDGLFNI----DSKSGLIFVNK 326
           PEN  +G  + ++  TD D       +  Y I   + ++ G FNI    +S  G++   K
Sbjct: 386 PENE-IGFEVQRLSVTDLDMPGTPAWQAVYKI---RVNEGGFFNITTDPESNQGILTTAK 441

Query: 327 ALDFETKEVHDLV------------------------------PRFAVEISSFD--EIAE 354
            LDFE ++ + L                               P F   +S  D  E   
Sbjct: 442 GLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLS 501

Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVP- 413
            G  +  + A D D+     ++Y +  +      W  ++  +G++T   N+D E++ V  
Sbjct: 502 RGEKIISLVAQDPDKQQIQKLSYFIGNDPA---RWLTVNKDNGIVTGNGNLDRESEYVKN 558

Query: 414 ---KLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKP 461
               + ++ TD+GV   + + T+++ + DVNDN P+     + +     +P
Sbjct: 559 NTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP 609

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  242 bits (618), Expect = 2e-71
 Identities = 95/510 (18%), Positives = 167/510 (32%), Gaps = 108/510 (21%)

Query: 22  LEISEG-VPVGTRVGFIG--DGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPL 78
             ++   +  G ++G +   D     +    L         D+   +    G +  K  +
Sbjct: 44  FSVNRRELERGRKLGKVNFSDC---TTRKHGLY-----DVGDSRFRVL-PDGTVLVKRHV 94

Query: 79  DRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAI------PLSG 132
                + +++                            R  + S ++             
Sbjct: 95  KLHKDTKFTISTW-----------------------DARGIKHSTNIAVASKRHRSGEEA 131

Query: 133 ENVRVVVRVIDENDNAPTFPSPFMS-----IEFPENTPRDVKRTLNAAKDRDLGIYNTQR 187
            +    + V+   +                I+  EN      + L      +   +N   
Sbjct: 132 HSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRL-VQIKSNKDRFNKVY 190

Query: 188 YNIVSGNT----NNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPL 243
           Y+I            FR+     + G + +       LDRE   +Y L   A+     P+
Sbjct: 191 YSITGQGADNPPQGVFRIE---WETGWMLV----TRPLDREEYDKYVLSSHAVSENGSPV 243

Query: 244 RGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA---GSNGEVEY 300
              M + + + D NDN+P F Q  +  +V E    GT +  V ATD D      NG + Y
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 303

Query: 301 SINRRQ--SDKDGLFNIDSKSGLIFV-NKALDFETKEVHDLV------------------ 339
           SI ++        LF I+ ++G+I +    LD E    + L                   
Sbjct: 304 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAI 363

Query: 340 ----------PRFAVEISSFDEIAE--PGTSVFQISAFDQDEG--INSVITYSLRENTDD 385
                     P F  +  +   + E   G  V ++S  D D          Y +R N   
Sbjct: 364 IQITDANDNAPIFDPKTYTA-LVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGG 422

Query: 386 HPSWFQI----DSKSGLITMKSNVDCETDPVPKLTVIATD---NGVPALSSSATVLVTIH 438
              +F I    +S  G++T    +D E      L +   +     VP  +S+ATV VT+ 
Sbjct: 423 ---FFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVE 479

Query: 439 DVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
           DVN+  P F  +   V + E+  +G  I+ 
Sbjct: 480 DVNEA-PFFVPAVSRVDVSEDLSRGEKIIS 508

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  234 bits (598), Expect = 1e-68
 Identities = 89/479 (18%), Positives = 148/479 (30%), Gaps = 87/479 (18%)

Query: 23  EISEGVPVGTRVGFIG-----DGFVGDSGP-PYLIV-PVPGSAVDTDLSIEQNTGEIRTK 75
            + EGV  GT+V  +      D     +G   Y I+   P   +    +I + TG I   
Sbjct: 271 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI 330

Query: 76  V-PLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGEN 134
              LDRE    Y+L         V+                D E           LS E 
Sbjct: 331 GTGLDREKFPEYTLT--------VQAT--------------DLEGA--------GLSVE- 359

Query: 135 VRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDL-GIYNTQRYNIVSG 193
            + ++++ D NDNAP F     +   PEN      + L+   D D+ G    Q    +  
Sbjct: 360 GKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSV-TDLDMPGTPAWQAVYKIRV 418

Query: 194 NTNNAFRLS-SHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDG---GSPPLRGSMIV 249
           N    F ++       G+L         LD E   +Y L I   +      P    +  V
Sbjct: 419 NEGGFFNITTDPESNQGILTT----AKGLDFELRKQYVLQITVENAEPFSVPLPTSTATV 474

Query: 250 NVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDK 309
            VT++DVN+  P F  +     V E+ + G  I  + A D D     ++ Y I    +D 
Sbjct: 475 TVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIG---NDP 530

Query: 310 DGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVE------------------------ 345
                ++  +G++  N  LD E++ V +      +                         
Sbjct: 531 ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVND 590

Query: 346 -----ISSFDEIAEPGTSVFQISAFDQDEGINSV-ITYSLRENTDDHPSWFQIDSKSGLI 399
                      + +       ++  D D   N+     SL   +D   +W       G  
Sbjct: 591 NGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSD--LTWKAELDSKGTS 648

Query: 400 TMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPE 458
            + S           + V+ +D       +      T+           +         
Sbjct: 649 MLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVN--ATVCSCEGKAIKCQEKLVGGFDLP 705

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  209 bits (533), Expect = 1e-59
 Identities = 74/377 (19%), Positives = 132/377 (35%), Gaps = 61/377 (16%)

Query: 137 VVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLN-AAKDRDLGIYNTQRYNIVSGNT 195
           V     D +   P F S               ++       D           + +    
Sbjct: 23  VPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRK------HGLYDVG 76

Query: 196 NNAFRLSS------HREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIV 249
           ++ FR+         R           I+    R      ++ + +    S     S   
Sbjct: 77  DSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSS 136

Query: 250 NVTIQDVNDNQPIFNQSR-------YFATVPENATVGTSIFQVFATDADAGSNGEVEYSI 302
            + +    +      + +          +  E       + Q+    ++     +V YSI
Sbjct: 137 KLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSI 193

Query: 303 NRRQSDKD--GLFNIDSKSGLIFVNKALDFETKEVHDLV--------------------- 339
             + +D    G+F I+ ++G + V + LD E  + + L                      
Sbjct: 194 TGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINV 253

Query: 340 -------PRFAVEI--SSFDEIAEPGTSVFQISAFDQDE---GINSVITYSLRENTDDHP 387
                  P+F  ++   S  E  +PGT V  +SA D+D+    +N V++YS+ +   + P
Sbjct: 254 IDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEP 313

Query: 388 SW--FQIDSKSGLI-TMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNE 444
               F I+ ++G+I  + + +D E  P   LTV ATD     LS     ++ I D NDN 
Sbjct: 314 IPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNA 373

Query: 445 PIFDQSFYNVTIPENKP 461
           PIFD   Y   +PEN+ 
Sbjct: 374 PIFDPKTYTALVPENEI 390

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  165 bits (418), Expect = 4e-44
 Identities = 40/276 (14%), Positives = 87/276 (31%), Gaps = 42/276 (15%)

Query: 235 ALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE-NATVGTSIFQVFATDADAG 293
           A       L    +V     DV+  +P F+ + Y  +V       G  + +V  +D    
Sbjct: 9   ASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTR 68

Query: 294 SNGEVEYSINRRQSDKDG----LFNIDSKSGLIFVNKALDFETKE-------------VH 336
            +G  +   +R +   DG      ++       F     D    +               
Sbjct: 69  KHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSG 128

Query: 337 DLVPRFAVEISSFD----------------------EIAEPGTSVFQISAFDQDEGINSV 374
           +     + ++                             E G    ++     ++   + 
Sbjct: 129 EEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDRFNK 188

Query: 375 ITYSLR-ENTDDHP-SWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSAT 432
           + YS+  +  D+ P   F+I+ ++G + +   +D E      L+  A       +     
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 248

Query: 433 VLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
           + + + D NDN P F Q  +  ++ E    G+ ++ 
Sbjct: 249 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMA 284

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 418 IATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPE-NKPKGSCILKSIFYD 473
            A+      L     V     DV+  +P F  + Y  ++      +G  + K  F D
Sbjct: 8   NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSD 64

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  262 bits (672), Expect = 1e-81
 Identities = 107/418 (25%), Positives = 164/418 (39%), Gaps = 74/418 (17%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
           G++    PLDRE  + + L A         +    + +V+ VID NDN P F     +  
Sbjct: 58  GQLSVTKPLDRELIARFHLRAHAVDINGNQVENP-IDIVINVIDMNDNRPEFLHQVWNGS 116

Query: 160 FPENTPRDVK-RTLNAAKDRDLGIY-NTQ-RYNIVSGN----TNNAFRLSSHREKDGVLY 212
            PE +       T+  A D D     N   RY I+S      + N F +++   + G + 
Sbjct: 117 VPEGSKPGTYVMTVT-AIDADDPNALNGMLRYRILSQAPSTPSPNMFTINN---ETGDII 172

Query: 213 LDLQINGVLDRETIPEYSLVIEALDGGSPP---LRGSMIVNVTIQDVNDNQPIFNQSRYF 269
               +   LDRE + +Y+L+I+A D    P   L  +    +T+ DVNDN P F    ++
Sbjct: 173 T---VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFY 229

Query: 270 ATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI----DSKSGLIFVN 325
             VPEN  V   +  +  TD D         +      D  G F I    +S  GL+ V 
Sbjct: 230 GEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVV 288

Query: 326 KALDFETKEVHDLV---------------------------------PRFAVEISSFD-- 350
           K +DFET  +  L                                  P FA         
Sbjct: 289 KPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQE 348

Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
           E    GT +  ++A D D  +   I Y+   +     +W +ID  +G IT  + +D E+ 
Sbjct: 349 EGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPA---NWLKIDPVNGQITTIAVLDRESP 405

Query: 411 PVPK----LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGS 464
            V       T +A+DNG+P +S + T+ + + D+NDN P            E     S
Sbjct: 406 NVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLP--QEAETCETPEPNS 461

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  257 bits (658), Expect = 1e-79
 Identities = 101/482 (20%), Positives = 163/482 (33%), Gaps = 89/482 (18%)

Query: 23  EISEGVPVGTRVGFI----GDGFVGDSGP-PYLIV-PVPGSAVDTDLSIEQNTGEIRT-K 75
            + EG   GT V  +     D     +G   Y I+   P +      +I   TG+I T  
Sbjct: 116 SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVA 175

Query: 76  VPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENV 135
             LDRE    Y+L+        ++                D E   +Y L          
Sbjct: 176 AGLDREKVQQYTLI--------IQAT--------------DMEGNPTYGLSN------TA 207

Query: 136 RVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQR--YNIVSG 193
             V+ V D NDN P F +     E PEN    +   L    D+D          Y I  G
Sbjct: 208 TAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTV-TDKDQPHTPAWNAAYRISGG 266

Query: 194 NTNNAFRLSSHREK-DGVLYLDLQINGVLDRETIPEYSLVIEALD------GGSPPLRGS 246
           +    F + +     DG++ +       +D ET   + L + A +      G   P + +
Sbjct: 267 DPTGRFAILTDPNSNDGLVTVV----KPIDFETNRMFVLTVAAENQVPLAKGIQHPPQST 322

Query: 247 MIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQ 306
             V+VT+ DVN+N P F  +       E    GT +  + A D D      + Y+     
Sbjct: 323 ATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL--- 378

Query: 307 SDKDGLFNIDSKSGLIFVNKALDFETKEVH------------------------------ 336
           SD      ID  +G I     LD E+  V                               
Sbjct: 379 SDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLD 438

Query: 337 --DLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINS-VITYSLRENTDDHPSWFQID 393
             D  P+   + +   E  EP      I+A D D   N+    + L  +       + I+
Sbjct: 439 INDNAPQVLPQEAETCETPEPN--SINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTIN 496

Query: 394 SKSGLI-TMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFY 452
             +G    +   +      + ++ +I TD+G P  S+ + + V +   + N    D   +
Sbjct: 497 RLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHH 556

Query: 453 NV 454
           + 
Sbjct: 557 HH 558

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  225 bits (576), Expect = 1e-67
 Identities = 84/363 (23%), Positives = 136/363 (37%), Gaps = 62/363 (17%)

Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNT----NNAFRLSSHREKDGVLYL 213
           I  PEN+     + L      D     + RY++            F ++      G L +
Sbjct: 7   INLPENSRGPFPQEL-VRIRSDRDKNLSLRYSVTGPGADQPPTGIFIIN---PISGQLSV 62

Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVP 273
                  LDRE I  + L   A+D     +   + + + + D+NDN+P F    +  +VP
Sbjct: 63  ----TKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118

Query: 274 ENATVGTSIFQVFATDADA--GSNGEVEYSI--NRRQSDKDGLFNIDSKSGLIF-VNKAL 328
           E +  GT +  V A DAD     NG + Y I      +    +F I++++G I  V   L
Sbjct: 119 EGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGL 178

Query: 329 DFETKEVHDLV-------------------------------PRFAVEISSFDEIAE--P 355
           D E  + + L+                               P F        E+ E   
Sbjct: 179 DREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYG-EVPENRV 237

Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQI----DSKSGLITMKSNVDCETDP 411
              V  ++  D+D+        + R +  D    F I    +S  GL+T+   +D ET+ 
Sbjct: 238 DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNR 297

Query: 412 VPKLTVIATDNGV------PALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSC 465
           +  LTV A +             S+ATV VT+ DVN+N P F  +   +   E    G+ 
Sbjct: 298 MFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTM 356

Query: 466 ILK 468
           +  
Sbjct: 357 LTT 359

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  108 bits (271), Expect = 2e-25
 Identities = 42/257 (16%), Positives = 75/257 (29%), Gaps = 55/257 (21%)

Query: 22  LEISEGVPVGTRVGFIG--DGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKVPL 78
           +   EG+  GT +  +   D          Y  +  P + +     I+   G+I T   L
Sbjct: 345 IRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWL----KIDPVNGQITTIAVL 400

Query: 79  DRET----RSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGEN 134
           DRE+     + Y+                  P                      P+SG  
Sbjct: 401 DRESPNVKNNIYNAT--------FLASDNGIP----------------------PMSG-T 429

Query: 135 VRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQ---RYNIV 191
             + + ++D NDNAP         E  E    +       A D D+            + 
Sbjct: 430 GTLQIYLLDINDNAPQVLPQ--EAETCETPEPNS--INITALDYDIDPNAGPFAFDLPLS 485

Query: 192 SGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNV 251
                  + ++          L+L+    +       Y + I   D G+PP     I+ V
Sbjct: 486 PVTIKRNWTINRL--NGDFAQLNLK----IKFLEAGIYEVPIIITDSGNPPKSNISILRV 539

Query: 252 TIQDVNDNQPIFNQSRY 268
            +   + N    +   +
Sbjct: 540 KVCQCDSNGDCTDVHHH 556

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  239 bits (612), Expect = 2e-74
 Identities = 66/358 (18%), Positives = 117/358 (32%), Gaps = 58/358 (16%)

Query: 157 SIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH-REKDGVLYLDL 215
           S           +       + D        + +        F++              +
Sbjct: 1   SRRVTRAVRPTKRIE---FTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAV 57

Query: 216 QINGVLDRETIPE------YSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQS--R 267
           ++    D E +        + ++             +  V + ++DVND  P F      
Sbjct: 58  RVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLP 117

Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA 327
             A V  NA   T +F + A D D   N  + Y I R      G F +D +SG++     
Sbjct: 118 MQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVR--DRTGGRFEVDERSGVVRTRGT 173

Query: 328 LDFETKEVHDLV-------------------------------PRFAVE--ISSFDEIAE 354
             F+    + L                                P+F +    +   E  +
Sbjct: 174 DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQK 233

Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPK 414
             + +  I A       +  I Y+L+       + F I   SG++ +   +D E    P 
Sbjct: 234 KDSDIISIKAKSFA---DREIRYTLKAQGQGAGT-FNIGPTSGIVKLAKELDFEDLRQPH 289

Query: 415 ---LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNV-TIPENKPKGSCILK 468
              L V AT++     S+S  + + + DVNDN P F+   Y    + E+ P G+ IL+
Sbjct: 290 VYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILR 346

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  234 bits (600), Expect = 1e-72
 Identities = 98/476 (20%), Positives = 152/476 (31%), Gaps = 117/476 (24%)

Query: 22  LEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
             ++  V    R+                         + D                D E
Sbjct: 2   RRVTRAVRPTKRI----------------------EFTEADG---------------DTE 24

Query: 82  TRSSYSLVAIPLSG-----ENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAI-------- 128
            +S + L            ++   V+    G +R K   D E       +          
Sbjct: 25  GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 84

Query: 129 -----PLSGENVRVVVRVIDENDNAPTFPSP--FMSIEFPENTPRDVK-RTLNAAKDRDL 180
                  +  N RV++ V D ND  P F +    M      N P +    TL  A+D D 
Sbjct: 85  HNAGIKYTD-NQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQ-ARDPDT 142

Query: 181 GIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGS 240
              N   Y IV   T   F +     + GV+       G    +   EY L ++A D   
Sbjct: 143 DH-NI-HYFIVRDRTGGRFEVDE---RSGVVRT----RGTDLFQLDMEYVLYVKAEDQNG 193

Query: 241 PPLRGSMIVNVTIQ---DVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGE 297
                        +         P F    Y A +PEN    + I  + A       + E
Sbjct: 194 KVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DRE 250

Query: 298 VEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFET---KEVHDLV--------------- 339
           + Y++ + Q    G FNI   SG++ + K LDFE      V+ L+               
Sbjct: 251 IRYTL-KAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVD 309

Query: 340 ------------PRFAVEISSFDEIAE---PGTSVFQISAFDQDEGINSVITYSLRENTD 384
                       P+F +       + E    GTS+ ++ A D D G N+ I Y + +   
Sbjct: 310 LTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD--- 366

Query: 385 DHPSWFQIDSKSGLITMKSNVDCET-DPVPKLTVIATDNGVPALSSSATVLVTIHD 439
                F +DS +G+I     +D +  +   +  V A D G P  S  ATV V   +
Sbjct: 367 ---DHFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  209 bits (533), Expect = 5e-64
 Identities = 65/333 (19%), Positives = 108/333 (32%), Gaps = 70/333 (21%)

Query: 163 NTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHR-----EKDGVLYLDLQI 217
           +  R  KR      + D        + +        F++         E +G + +    
Sbjct: 1   SAVRPTKRIE--FTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV---- 54

Query: 218 NGVLDRE------TIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQS--RYF 269
               D E      TI  + ++             +  V + ++DVND  P F        
Sbjct: 55  KKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQ 114

Query: 270 ATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALD 329
           A V  NA   T +F + A D D   N  + Y I   +    G F +D +SG++       
Sbjct: 115 AVVQLNAPPNTPVFTLQARDPDTDHN--IHYFI--VRDRTGGRFEVDERSGVVRTRGTDL 170

Query: 330 FETKEVHDLV-------------------------------PRFA-----VEISSFDEIA 353
           F+    + L                                P+F       EI    E  
Sbjct: 171 FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIP---ENQ 227

Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVP 413
           +  + +  I A       +  I Y+L+         F I   SG++ +   +D E    P
Sbjct: 228 KKDSDIISIKAKSFA---DREIRYTLKAQGQGA-GTFNIGPTSGIVKLAKELDFEDLRQP 283

Query: 414 K---LTVIATDNGVPALSSSATVLVTIHDVNDN 443
               L V AT++     S+S  + + + DVNDN
Sbjct: 284 HVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDN 315

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  195 bits (498), Expect = 8e-59
 Identities = 58/245 (23%), Positives = 90/245 (36%), Gaps = 34/245 (13%)

Query: 107 GEIRTKVPLDRETRSSYSLV-------------AIPLSGENVRVVVRVIDENDNAPTFPS 153
           G +R K   D E       +              I  +  N RV++ V D ND  P F +
Sbjct: 50  GAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTD-NQRVIILVKDVNDEPPYFIN 108

Query: 154 PFMSIEF--PENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVL 211
             + ++     N P +       A+D D    N   Y IV   T   F +     + GV+
Sbjct: 109 RPLPMQAVVQLNAPPNTPVFTLQARDPDTDH-NIH-YFIVRDRTGGRFEVDE---RSGVV 163

Query: 212 YLDLQINGVLDRETIPEYSLVIEALDGGSPP----LRGSMIVNVTIQDVNDNQPIFNQSR 267
                  G    +   EY L ++A D          + +    ++I       P F    
Sbjct: 164 RTR----GTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPS 218

Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA 327
           Y A +PEN    + I  + A       + E+ Y++ + Q    G FNI   SG++ + K 
Sbjct: 219 YEAEIPENQKKDSDIISIKAKSFA---DREIRYTL-KAQGQGAGTFNIGPTSGIVKLAKE 274

Query: 328 LDFET 332
           LDFE 
Sbjct: 275 LDFED 279

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  145 bits (369), Expect = 4e-40
 Identities = 45/235 (19%), Positives = 72/235 (30%), Gaps = 53/235 (22%)

Query: 282 IFQVFATDADAGSNGEVEYSINRRQS------DKDGLFNIDSKSGLIFVNKALDFETKEV 335
             ++  T+AD  + G+  + + +           D  +     +G + V K  D+E    
Sbjct: 6   TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65

Query: 336 HDLV----------------------------------PRFAVEISSFD----EIAEPGT 357
              +                                  P F              A P T
Sbjct: 66  EKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNT 125

Query: 358 SVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTV 417
            VF + A D D   N  I Y +    D     F++D +SG++  +     + D    L V
Sbjct: 126 PVFTLQARDPDTDHN--IHYFIVR--DRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYV 181

Query: 418 IATDNGVPA----LSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
            A D           S+    ++I       P F    Y   IPEN+ K S I+ 
Sbjct: 182 KAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIIS 235

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  106 bits (266), Expect = 1e-25
 Identities = 42/243 (17%), Positives = 77/243 (31%), Gaps = 51/243 (20%)

Query: 24  ISEGVPVGTRVGFIG--DGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
           +    P  T V  +   D     +   +++    G        +++ +G +RT+     +
Sbjct: 117 VQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGR----FEVDERSGVVRTRGTDLFQ 172

Query: 82  TRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRV 141
               Y L         V+                D+  +                  + +
Sbjct: 173 LDMEYVLY--------VKA--------------EDQNGKVDDR----RFQS-TPEERLSI 205

Query: 142 IDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQ-RYNIV-SGNTNNAF 199
           +     AP F  P    E PEN  +D       AK       + + RY +   G     F
Sbjct: 206 VG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA----DREIRYTLKAQGQGAGTF 260

Query: 200 RLSSHREKDGVLYLDLQINGVLDRETIPE---YSLVIEALDGGSPPLRGSMIVNVTIQDV 256
            +       G++ L       LD E + +   YSL++ A +        S+ + + + DV
Sbjct: 261 NIGP---TSGIVKL----AKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDV 312

Query: 257 NDN 259
           NDN
Sbjct: 313 NDN 315

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 96.7 bits (241), Expect = 2e-22
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 14/128 (10%)

Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTD------DHPSWFQIDSKSGLITMKSNVDCE 408
                 +I   + D        + L + TD         + +     +G + +K   D E
Sbjct: 2   AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61

Query: 409 TDPVPK------LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQS--FYNVTIPENK 460
                K      +      N     + +  V++ + DVND  P F          +  N 
Sbjct: 62  ELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNA 121

Query: 461 PKGSCILK 468
           P  + +  
Sbjct: 122 PPNTPVFT 129

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 27/135 (20%), Positives = 37/135 (27%), Gaps = 49/135 (36%)

Query: 23  EISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRET 82
           EI E     + +  I                    A            EIR         
Sbjct: 222 EIPENQKKDSDIISI-------------------KAKSFA------DREIR--------- 247

Query: 83  RSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSS---YSLVAI------PLSGE 133
              Y+L A         +      G ++    LD E       YSL+          S  
Sbjct: 248 ---YTLKAQGQGAGTFNIGP--TSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFST- 301

Query: 134 NVRVVVRVIDENDNA 148
           +V + +RV D NDNA
Sbjct: 302 SVDLTIRVTDVNDNA 316

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  197 bits (502), Expect = 2e-59
 Identities = 89/293 (30%), Positives = 127/293 (43%), Gaps = 49/293 (16%)

Query: 56  GSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPL 115
           G    T   I   TG+I     LDRE ++ Y+L          + V              
Sbjct: 41  GDGAGTIFQINDITGDIHAIKRLDREEKAEYTL--------TAQAV-------------- 78

Query: 116 DRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAA 175
           D ET         PL       +++V D NDNAP F +       PE +      T   A
Sbjct: 79  DFETNK-------PLEPP-SEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTA 130

Query: 176 KDRDLGIY--NTQ-RYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLV 232
            D D  +Y  + +  Y+I+ G     F +     +  ++         +DRE   EY +V
Sbjct: 131 TDADDPVYGNSAKLVYSILEGQ--PYFSIEP---ETAIIKT---ALPNMDREAKEEYLVV 182

Query: 233 IEALDGG--SPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDA 290
           I+A D G  S  L G+  + VT+ DVNDN P F QS Y  +VPE+  +GT+I +V A D 
Sbjct: 183 IQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQ 242

Query: 291 DAGSNGEVEYSINRRQSDKDGLF----NIDSKSGLIFVNKALDFETKEVHDLV 339
           D G N +  Y I     D   LF    +  ++ G+I + K LDFETK+ + L 
Sbjct: 243 DIGENAQSSYDII--DGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLK 293

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  185 bits (472), Expect = 5e-55
 Identities = 81/338 (23%), Positives = 140/338 (41%), Gaps = 65/338 (19%)

Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREK 207
           +  +   F+     E +  +         D D G     +Y +        F+++   + 
Sbjct: 1   SWVWNQMFVL---EEFSGPEPILVGRLHTDLDPGSKKI-KYILSGDGAGTIFQIN---DI 53

Query: 208 DGVLYLDLQINGVLDRETIPEYSLVIEALD-GGSPPLRGSMIVNVTIQDVNDNQPIFNQS 266
            G ++        LDRE   EY+L  +A+D   + PL       + +QD+NDN P F   
Sbjct: 54  TGDIHA----IKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNG 109

Query: 267 RYFATVPENATVGTSIFQVFATDADA---GSNGEVEYSINRRQSDKDGLFNIDSKSGLIF 323
            Y ATVPE + +GTS+  V ATDAD    G++ ++ YSI     +    F+I+ ++ +I 
Sbjct: 110 PYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSI----LEGQPYFSIEPETAIIK 165

Query: 324 V-NKALDFETKEVHDLV------------------------------PRFAVEISSF--D 350
                +D E KE + +V                              P+FA  +  F   
Sbjct: 166 TALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVP 225

Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQI----DSKSGLITMKSNVD 406
           E    GT++ ++ A DQD G N+  +Y + +   D  + F+I     ++ G+I ++  +D
Sbjct: 226 EDVVLGTAIGRVKANDQDIGENAQSSYDIID--GDGTALFEITSDAQAQDGVIRLRKPLD 283

Query: 407 CETDPVPKLTVIATDNGVPA-------LSSSATVLVTI 437
            ET     L V A +  +            +ATV + +
Sbjct: 284 FETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  168 bits (427), Expect = 2e-48
 Identities = 61/245 (24%), Positives = 102/245 (41%), Gaps = 47/245 (19%)

Query: 261 PIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSG 320
            ++NQ      + E +     +     TD D G + +++Y +         +F I+  +G
Sbjct: 2   WVWNQ---MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYIL--SGDGAGTIFQINDITG 55

Query: 321 LIFVNKALDFETKEVHDLV-----------------------------PRFAVE--ISSF 349
            I   K LD E K  + L                              P F      ++ 
Sbjct: 56  DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATV 115

Query: 350 DEIAEPGTSVFQISAFDQDE---GINSVITYSLRENTDDHPSWFQIDSKSGLI-TMKSNV 405
            E++  GTSV  ++A D D+   G ++ + YS+ E        F I+ ++ +I T   N+
Sbjct: 116 PEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPY----FSIEPETAIIKTALPNM 171

Query: 406 DCETDPVPKLTVIATDNG--VPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKG 463
           D E      + + A D G     LS + T+ VT+ DVNDN P F QS Y+ ++PE+   G
Sbjct: 172 DREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLG 231

Query: 464 SCILK 468
           + I +
Sbjct: 232 TAIGR 236

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 98.5 bits (246), Expect = 4e-23
 Identities = 55/249 (22%), Positives = 91/249 (36%), Gaps = 59/249 (23%)

Query: 24  ISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETR 83
           + E   +GT V  +                   +A D D  +  N+ ++           
Sbjct: 115 VPEMSILGTSVTNV-------------------TATDADDPVYGNSAKLV---------- 145

Query: 84  SSYSLVAIPLSGENVRVVSFYEPGEIRTKVP-LDRETRSSYSLVAI---------PLSGE 133
             YS+    L G+    +   E   I+T +P +DRE +  Y +V            LSG 
Sbjct: 146 --YSI----LEGQPYFSIE-PETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGT 198

Query: 134 NVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSG 193
              + V + D NDN P F         PE+           A D+D+G      Y+I+ G
Sbjct: 199 -TTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDG 257

Query: 194 NTNNAFRLSSHREKD-GVLYLDLQINGVLDRETIPEYSLVIEALDGGSP-------PLRG 245
           +    F ++S  +   GV+ L       LD ET   Y+L +EA +           P + 
Sbjct: 258 DGTALFEITSDAQAQDGVIRL----RKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKD 313

Query: 246 SMIVNVTIQ 254
           +  V + ++
Sbjct: 314 TATVKIVVE 322

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  181 bits (462), Expect = 8e-55
 Identities = 59/198 (29%), Positives = 86/198 (43%), Gaps = 19/198 (9%)

Query: 144 ENDNAPTFPSPF--MSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRL 201
           + +  P F + F    +   E+TP     T   A+D D        + +     +  F +
Sbjct: 1   QVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND---PLVFGVSGEEASRFFAV 57

Query: 202 SSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQP 261
                  GV++L       LDRET  E+++     D        +  VN+ + DVNDN P
Sbjct: 58  EP---DTGVVWLR----QPLDRETKSEFTVEFSVSDHQGVI---TRKVNIQVGDVNDNAP 107

Query: 262 IFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGL 321
            F+   Y   +PEN  VGT IF V ATD D G+ G V YS           F IDS  G+
Sbjct: 108 TFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF----QPPSPFFAIDSARGI 163

Query: 322 IFVNKALDFETKEVHDLV 339
           + V + LD+E  + + L 
Sbjct: 164 VTVIQELDYEVTQAYQLT 181

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  171 bits (436), Expect = 5e-51
 Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 39/217 (17%)

Query: 257 NDNQPIFNQSRY--FATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFN 314
            +  P F    +  +  + E+  VG+S+ Q+ A D D   N  + + +     +    F 
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGV--SGEEASRFFA 56

Query: 315 IDSKSGLIFVNKALDFETKEVHDLV-------------------------PRFAVEISSF 349
           ++  +G++++ + LD ETK    +                          P F  +  S 
Sbjct: 57  VEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSV 116

Query: 350 D--EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDC 407
              E    GT +F ++A D D G    + YS +  +      F IDS  G++T+   +D 
Sbjct: 117 RIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF----FAIDSARGIVTVIQELDY 172

Query: 408 ETDPVPKLTVIATDNGVP-ALSSSATVLVTIHDVNDN 443
           E     +LTV ATD      LS+ A + + I D+ D 
Sbjct: 173 EVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  114 bits (288), Expect = 9e-30
 Identities = 62/243 (25%), Positives = 95/243 (39%), Gaps = 55/243 (22%)

Query: 22  LEISEGVPVGTRVGFIG--DGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKVPL 78
           L ISE  PVG+ V  +   D    D+ P  + +    G       ++E +TG +  + PL
Sbjct: 17  LLISEDTPVGSSVTQLLARDM---DNDPLVFGVS---GEEASRFFAVEPDTGVVWLRQPL 70

Query: 79  DRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVV 138
           DRET+S +++           V               D +   +             +V 
Sbjct: 71  DRETKSEFTV--------EFSVS--------------DHQGVIT------------RKVN 96

Query: 139 VRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQ-RYNIVSGNTNN 197
           ++V D NDNAPTF +   S+  PENTP      +  A D DLG       Y+      + 
Sbjct: 97  IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGA-GGSVLYSFQPP--SP 153

Query: 198 AFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGG-SPPLRGSMIVNVTIQDV 256
            F + S R   G++ +       LD E    Y L + A D   + PL     + + I D+
Sbjct: 154 FFAIDSAR---GIVTV----IQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDM 206

Query: 257 NDN 259
            D 
Sbjct: 207 QDM 209

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  106 bits (267), Expect = 7e-27
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
           E    G+SV Q+ A D D   N  + + +    ++   +F ++  +G++ ++  +D ET 
Sbjct: 21  EDTPVGSSVTQLLARDMD---NDPLVFGVS--GEEASRFFAVEPDTGVVWLRQPLDRETK 75

Query: 411 PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
               +    +D+       +  V + + DVNDN P F    Y+V IPEN P G+ I  
Sbjct: 76  SEFTVEFSVSDHQ---GVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFI 130

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  164 bits (417), Expect = 3e-48
 Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 18/193 (9%)

Query: 157 SIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNA----FRLSSHREKDGVLY 212
           +I  PEN   +  + L      +        Y+I     +      F +     + G L 
Sbjct: 6   AISCPENEKGEFPKNL-VQIKSNRDKETKVFYSITGQGADKPPVGVFIIE---RETGWLK 61

Query: 213 LDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATV 272
           +       LDRE I +Y L   A+      +   M + +T+ D NDN+P F Q  +  +V
Sbjct: 62  V----TQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117

Query: 273 PENATVGTSIFQVFATDADAGS---NGEVEYSI--NRRQSDKDGLFNIDSKSGLIFV-NK 326
            E A  GTS+ +V ATDAD      N  + Y+I     +     +F ++  +G+I V   
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177

Query: 327 ALDFETKEVHDLV 339
            LD E+   + LV
Sbjct: 178 GLDRESYPTYTLV 190

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  142 bits (361), Expect = 3e-40
 Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 39/210 (18%)

Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVN 325
              + PEN   G     +    ++     +V YSI  + +DK   G+F I+ ++G + V 
Sbjct: 5   AAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63

Query: 326 KALDFETKEVHDLV----------------------------PRFAVEI--SSFDEIAEP 355
           + LD E    + L                             P F  E+   S  E A P
Sbjct: 64  QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123

Query: 356 GTSVFQISAFDQDEGI---NSVITYSLRENTDDHPS--WFQIDSKSGLI-TMKSNVDCET 409
           GTSV ++SA D D+ +   N+ I Y++     + P    F ++  +G+I  + S +D E+
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES 183

Query: 410 DPVPKLTVIATDNGVPALSSSATVLVTIHD 439
            P   L V A D     LS++A  ++T+ D
Sbjct: 184 YPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  118 bits (297), Expect = 5e-31
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSW--FQIDSKSGLITMKSNVDCETDP 411
           E G     +     +    + + YS+     D P    F I+ ++G + +   +D E   
Sbjct: 13  EKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIA 72

Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
              L   A  +   A+     +++T+ D NDN P F Q  +  ++ E    G+ ++K
Sbjct: 73  KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  111 bits (280), Expect = 1e-28
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
           G ++   PLDRE  + Y L +         +    + +V+ V D+NDN P F        
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDP-MEIVITVTDQNDNRPEFTQEVFEGS 116

Query: 160 FPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGNTN----NAFRLSSHREKDGVLY 212
             E           +A D D  +   N    Y IVS +      N F ++      GV+ 
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDT---GVIS 173

Query: 213 LDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
           +   +   LDRE+ P Y+LV++A D     L  +    +T++D
Sbjct: 174 V---LTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 23  EISEGVPVGTRVGFIG-----DGFVGDSGP-PYLIVP-VPGSAVDTDLSIEQNTGEIRTK 75
            ++EG   GT V  +      D     +    Y IV   P        ++ ++TG I   
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175

Query: 76  V-PLDRETRSSYSLV 89
              LDRE+  +Y+LV
Sbjct: 176 TSGLDRESYPTYTLV 190

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  163 bits (415), Expect = 6e-48
 Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 18/195 (9%)

Query: 150 TFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDG 209
           ++ +    +   E T  D +       D+D G   + +Y +      + F ++   E  G
Sbjct: 1   SWMANQFFLL-EEYTGSDYQYVGKLHSDQDRGD-GSLKYILSGDGAGDLFIIN---ENTG 55

Query: 210 VLYLDLQINGVLDRETIPEYSLVIEALDGGS-PPLRGSMIVNVTIQDVNDNQPIFNQSRY 268
            +         LDRE  P Y L  +A++  +  P+       + I D+NDN+PIF +  Y
Sbjct: 56  DIQA----TKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVY 111

Query: 269 FATVPENATVGTSIFQVFATDADA---GSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVN 325
            ATVPE A VGT + QV ATDAD    G++ +V YSI          F+++S++G+I   
Sbjct: 112 TATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSI----LQGQPYFSVESETGIIKTA 167

Query: 326 KA-LDFETKEVHDLV 339
              +D E +E + +V
Sbjct: 168 LLNMDRENREQYQVV 182

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  132 bits (334), Expect = 2e-36
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 44/211 (20%)

Query: 266 SRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVN 325
           +  F  + E             +D D G +G ++Y +         LF I+  +G I   
Sbjct: 4   ANQFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYIL--SGDGAGDLFIINENTGDIQAT 60

Query: 326 KALDFETKEVHDLV-----------------------------PRFAVEISSF--DEIAE 354
           K LD E K V+ L                              P F  ++ +    E+A+
Sbjct: 61  KRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMAD 120

Query: 355 PGTSVFQISAFDQDE---GINSVITYSLRENTDDHPSWFQIDSKSGLI-TMKSNVDCETD 410
            GT V Q++A D D+   G ++ + YS+ +       +F ++S++G+I T   N+D E  
Sbjct: 121 VGTFVVQVTATDADDPTYGNSAKVVYSILQGQP----YFSVESETGIIKTALLNMDRENR 176

Query: 411 PVPKLTVIATDNGVP--ALSSSATVLVTIHD 439
              ++ + A D G     LS + TV +T+ D
Sbjct: 177 EQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  108 bits (273), Expect = 9e-28
 Identities = 55/239 (23%), Positives = 86/239 (35%), Gaps = 48/239 (20%)

Query: 24  ISEGVPVGTRVGFIG--DGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
           + E      +       D   GD    Y++    G        I +NTG+I+    LDRE
Sbjct: 10  LEEYTGSDYQYVGKLHSDQDRGDGSLKYILS---GDGAGDLFIINENTGDIQATKRLDRE 66

Query: 82  TRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRV 141
            +  Y L A                        ++R T         P+  E    ++++
Sbjct: 67  EKPVYILRA----------------------QAVNRRTGR-------PVEPE-SEFIIKI 96

Query: 142 IDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGNTNNA 198
            D NDN P F     +   PE            A D D   Y  + +  Y+I+ G     
Sbjct: 97  HDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQ--PY 154

Query: 199 FRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSP--PLRGSMIVNVTIQD 255
           F + S   + G++         +DRE   +Y +VI+A D G     L G+  VN+T+ D
Sbjct: 155 FSVES---ETGIIKT---ALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  106 bits (267), Expect = 6e-27
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 4/119 (3%)

Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
           E              DQD G +  + Y L  +       F I+  +G I     +D E  
Sbjct: 12  EYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGD--LFIINENTGDIQATKRLDREEK 68

Query: 411 PVPKLTVIATDNGV-PALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
           PV  L   A +      +   +  ++ IHD+NDNEPIF +  Y  T+PE    G+ +++
Sbjct: 69  PVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQ 127

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 23  EISEGVPVGTRVGFIG-----DGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKV 76
            + E   VGT V  +      D   G+S    Y I+           S+E  TG I+T +
Sbjct: 114 TVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG-----QPYFSVESETGIIKTAL 168

Query: 77  -PLDRETRSSYSLV 89
             +DRE R  Y +V
Sbjct: 169 LNMDRENREQYQVV 182

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  161 bits (410), Expect = 4e-47
 Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 16/187 (8%)

Query: 157 SIEFPENTPRDVKRTLN--AAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLD 214
            I  PEN  +   R +      DR  G         V  +    FR++   E  G + + 
Sbjct: 7   PILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRIN---ENTGSVSV- 62

Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPE 274
                 LDRETI  Y L +E  D     L G + + V + D NDN+PIF +  Y   V E
Sbjct: 63  ---TRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVME 119

Query: 275 NATVGTSIFQVFATDAD--AGSNGEVEYSINRRQSDK--DGLFNIDSKSGLIFV---NKA 327
            +  GT++ ++ A DAD  A  N  + Y+I ++  DK    +F ID + G I        
Sbjct: 120 GSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPAL 179

Query: 328 LDFETKE 334
           LD ET E
Sbjct: 180 LDRETLE 186

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  126 bits (318), Expect = 6e-34
 Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 45/212 (21%)

Query: 271 TVPEN--ATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKAL 328
            +PEN        + +V  +D   GS   +         D  G F I+  +G + V + L
Sbjct: 9   LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKG--VDQDPKGTFRINENTGSVSVTRTL 66

Query: 329 DFETKEVHDLV----------------------------PRFAVEI--SSFDEIAEPGTS 358
           D ET   + L                             P F          E +  GT+
Sbjct: 67  DRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126

Query: 359 VFQISAFDQDE--GINSVITYSLRENTDDHP--SWFQIDSKSGLIT---MKSNVDCETDP 411
           V +++AFD D+    N+++ Y++R+ T D P  + F ID + G I      + +D ET  
Sbjct: 127 VMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE 186

Query: 412 VPK--LTVIATDNG--VPALSSSATVLVTIHD 439
            PK  L + A D       L+ +AT  + I D
Sbjct: 187 NPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  112 bits (282), Expect = 6e-29
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
           +       V ++   D+ EG    +T        D    F+I+  +G +++   +D ET 
Sbjct: 14  QRQPFPRDVGKVVDSDRPEGSKFRLTGKGV--DQDPKGTFRINENTGSVSVTRTLDRETI 71

Query: 411 PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
              +L V  TD     L     + V + D NDN PIF +  Y   + E  P G+ +++
Sbjct: 72  ATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMR 129

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  100 bits (252), Expect = 1e-24
 Identities = 62/248 (25%), Positives = 87/248 (35%), Gaps = 53/248 (21%)

Query: 22  LEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDL----SIEQNTGEIRTKVP 77
           +  ++  P    VG + D      G  + +    G  VD D      I +NTG +     
Sbjct: 10  IPENQRQPFPRDVGKVVD-SDRPEGSKFRLT---GKGVDQDPKGTFRINENTGSVSVTRT 65

Query: 78  LDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRV 137
           LDRET ++Y L                           D   +         L G  V +
Sbjct: 66  LDRETIATYQLYV----------------------ETTDASGK--------TLEGP-VPL 94

Query: 138 VVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIY-NTQ-RYNIVSGN- 194
            V VID+NDN P F          E +P         A D D     N   RYNI     
Sbjct: 95  EVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTP 154

Query: 195 ---TNNAFRLSSHREKDGVLYLDLQINGVLDRETI--PEYSLVIEALDGG--SPPLRGSM 247
              + N F +   +   G +   +    +LDRET+  P+Y L+IEA D       L G+ 
Sbjct: 155 DKPSPNMFYIDPEK---GDIVT-VVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTA 210

Query: 248 IVNVTIQD 255
              + I D
Sbjct: 211 TATIVIDD 218

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  160 bits (406), Expect = 1e-46
 Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 19/194 (9%)

Query: 151 FPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGV 210
             + F  IE  E T  D         D D G     +Y +        F +    +K G 
Sbjct: 4   VWNQFFVIE--EYTGPDPVLVGRLHSDIDSGD-GNIKYILSGEGAGTIFVID---DKSGN 57

Query: 211 LYLDLQINGVLDRETIPEYSLVIEALDGGSP-PLRGSMIVNVTIQDVNDNQPIFNQSRYF 269
           ++        LDRE   +Y+L+ +A+D  +  PL       V +QD+NDN P F    Y 
Sbjct: 58  IHAT----KTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYH 113

Query: 270 ATVPENATVGTSIFQVFATDADA---GSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVN- 325
           A VPE + VGTS+ QV A+DAD    G++ ++ YSI     +    F++++++G+I    
Sbjct: 114 ANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSI----LEGQPYFSVEAQTGIIRTAL 169

Query: 326 KALDFETKEVHDLV 339
             +D E KE + +V
Sbjct: 170 PNMDREAKEEYHVV 183

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  145 bits (369), Expect = 3e-41
 Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 44/215 (20%)

Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKA 327
            F  + E       +     +D D+G +G ++Y ++   +    +F ID KSG I   K 
Sbjct: 7   QFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAG--TIFVIDDKSGNIHATKT 63

Query: 328 LDFETKEVHDLV-----------------------------PRFAVEISSFD--EIAEPG 356
           LD E +  + L+                             P F  EI   +  E +  G
Sbjct: 64  LDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVG 123

Query: 357 TSVFQISAFDQDE---GINSVITYSLRENTDDHPSWFQIDSKSGLI-TMKSNVDCETDPV 412
           TSV Q++A D D+   G ++ + YS+ E       +F +++++G+I T   N+D E    
Sbjct: 124 TSVIQVTASDADDPTYGNSAKLVYSILEGQP----YFSVEAQTGIIRTALPNMDREAKEE 179

Query: 413 PKLTVIATDNG--VPALSSSATVLVTIHDVNDNEP 445
             + + A D G  +  LS +  V +T+ D   ++ 
Sbjct: 180 YHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  121 bits (305), Expect = 4e-32
 Identities = 58/245 (23%), Positives = 87/245 (35%), Gaps = 48/245 (19%)

Query: 24  ISEGVPVGTRVGFIG--DGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRE 81
           I E       +      D   GD    Y++    G    T   I+  +G I     LDRE
Sbjct: 11  IEEYTGPDPVLVGRLHSDIDSGDGNIKYILS---GEGAGTIFVIDDKSGNIHATKTLDRE 67

Query: 82  TRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRV 141
            R+ Y+L+A                        +DR+T         PL       +V+V
Sbjct: 68  ERAQYTLMA----------------------QAVDRDTNR-------PLEPP-SEFIVKV 97

Query: 142 IDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGNTNNA 198
            D NDN P F         PE +          A D D   Y  + +  Y+I+ G     
Sbjct: 98  QDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PY 155

Query: 199 FRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGS--PPLRGSMIVNVTIQDV 256
           F + +   + G++         +DRE   EY +VI+A D G     L G+  V +T+ D 
Sbjct: 156 FSVEA---QTGIIRT---ALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDD 209

Query: 257 NDNQP 261
             +  
Sbjct: 210 YKDDD 214

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  109 bits (275), Expect = 6e-28
 Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
           E   P   +      D D G +  I Y L          F ID KSG I     +D E  
Sbjct: 13  EYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTI--FVIDDKSGNIHATKTLDREER 69

Query: 411 PVPKLTVIATDNGVPA-LSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
               L   A D      L   +  +V + D+NDN P F    Y+  +PE    G+ +++
Sbjct: 70  AQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQ 128

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 41/134 (30%)

Query: 23  EISEGVPVGTRVGFIG-----DGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKV 76
            + E   VGT V  +      D   G+S    Y I+           S+E  TG IRT +
Sbjct: 115 NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-----QPYFSVEAQTGIIRTAL 169

Query: 77  P-LDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENV 135
           P +DRE +  Y +V        ++                D             LSG   
Sbjct: 170 PNMDREAKEEYHVV--------IQAK--------------DMGGHMG------GLSG-TT 200

Query: 136 RVVVRVIDENDNAP 149
           +V + + D+  +  
Sbjct: 201 KVTITLTDDYKDDD 214

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  159 bits (403), Expect = 3e-46
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 17/191 (8%)

Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNA----FRLSSHREKDGVLYL 213
           I  PEN+     + L      D     + RY++     +      F ++      G L +
Sbjct: 7   INLPENSRGPFPQEL-VRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINP---ISGQLSV 62

Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVP 273
                  LDRE I  + L   A+D     +   + + + + D+NDN+P F    +  +VP
Sbjct: 63  ----TKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118

Query: 274 ENATVGTSIFQVFATDAD--AGSNGEVEYSI--NRRQSDKDGLFNIDSKSGLIF-VNKAL 328
           E +  GT +  V A DAD     NG + Y I      +    +F I++++G I  V   L
Sbjct: 119 EGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGL 178

Query: 329 DFETKEVHDLV 339
           D E  + + L+
Sbjct: 179 DREKVQQYTLI 189

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  139 bits (351), Expect = 1e-38
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 41/209 (19%)

Query: 271 TVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVNKAL 328
            +PEN+  G    ++    +D   N  + YS+    +D+   G+F I+  SG + V K L
Sbjct: 8   NLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66

Query: 329 DFETKEVHDLV----------------------------PRFAVEI--SSFDEIAEPGTS 358
           D E      L                             P F  ++   S  E ++PGT 
Sbjct: 67  DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126

Query: 359 VFQISAFDQDE--GINSVITYSLRENT--DDHPSWFQIDSKSGLI-TMKSNVDCETDPVP 413
           V  ++A D D+   +N ++ Y +         P+ F I++++G I T+ + +D E     
Sbjct: 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQY 186

Query: 414 KLTVIATDNGVP---ALSSSATVLVTIHD 439
            L + ATD        LS++AT ++T+ D
Sbjct: 187 TLIIQATDMEGNPTYGLSNTATAVITVTD 215

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  119 bits (300), Expect = 2e-31
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDP 411
             G    ++     D   N  + YS+     D P    F I+  SG +++   +D E   
Sbjct: 13  SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 72

Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
              L   A D     + +   +++ + D+NDN P F    +N ++PE    G+ ++ 
Sbjct: 73  RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMT 129

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  102 bits (257), Expect = 2e-25
 Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 23/165 (13%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTFPSPFMSIE 159
           G++    PLDRE  + + L A         +    + +V+ VID NDN P F     +  
Sbjct: 58  GQLSVTKPLDRELIARFHLRAHAVDINGNQVEN-PIDIVINVIDMNDNRPEFLHQVWNGS 116

Query: 160 FPENTPRDVKRTLNAAKDRDLGIY-NTQ-RYNIVSGN----TNNAFRLSSHREKDGVLYL 213
            PE +          A D D     N   RY I+S      + N F +++     G +  
Sbjct: 117 VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNE---TGDIIT 173

Query: 214 DLQINGVLDRETIPEYSLVIEALDGGSPP---LRGSMIVNVTIQD 255
              +   LDRE + +Y+L+I+A D    P   L  +    +T+ D
Sbjct: 174 ---VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 23  EISEGVPVGTRVGFI----GDGFVGDSGP-PYLIVPVPGSAVDTDL-SIEQNTGEIRTKV 76
            + EG   GT V  +     D     +G   Y I+    S    ++ +I   TG+I T  
Sbjct: 116 SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVA 175

Query: 77  -PLDRETRSSYSLV 89
             LDRE    Y+L+
Sbjct: 176 AGLDREKVQQYTLI 189

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  155 bits (395), Expect = 3e-45
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 17/186 (9%)

Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQI 217
           +   E     +   +               Y I   + N  F++      DG +Y     
Sbjct: 7   MHIREEIDSPLPHHVGKLTSSVGN--KNAMYIIEGESANTIFKVQ---GYDGDIYA---- 57

Query: 218 NGVLDRETIPEYSLVIEALD-GGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENA 276
              LDRE   EY L    +D   +  L       + + D+NDN PIF Q  +  +VPE +
Sbjct: 58  FERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMS 117

Query: 277 TVGTSIFQVFATDAD---AGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETK 333
            +GTS+ +V A DAD      +  V Y I       +  F +D    +      LD E++
Sbjct: 118 RLGTSVTKVTAEDADDPTVAGHATVTYQI----IKGNEYFTVDDSGVIFTARADLDRESQ 173

Query: 334 EVHDLV 339
             ++++
Sbjct: 174 SAYEII 179

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  125 bits (315), Expect = 1e-33
 Identities = 42/215 (19%), Positives = 88/215 (40%), Gaps = 51/215 (23%)

Query: 262 IFNQSRYFATVPEN--ATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKS 319
           I+N+      + E   + +   + ++ ++      N    Y I       + +F +    
Sbjct: 3   IWNR----MHIREEIDSPLPHHVGKLTSSVG----NKNAMYII--EGESANTIFKVQGYD 52

Query: 320 GLIFVNKALDFETKEVHDLV-----------------------------PRFAVEISSFD 350
           G I+  + LD E K  ++L                              P F  +I +  
Sbjct: 53  GDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGS 112

Query: 351 --EIAEPGTSVFQISAFDQDE---GINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNV 405
             E++  GTSV +++A D D+     ++ +TY + +  +    +F +D    + T ++++
Sbjct: 113 VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE----YFTVDDSGVIFTARADL 168

Query: 406 DCETDPVPKLTVIATDN-GVPALSSSATVLVTIHD 439
           D E+    ++ V A D  G+   SS+ATV++ + D
Sbjct: 169 DRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  105 bits (263), Expect = 2e-26
 Identities = 52/240 (21%), Positives = 84/240 (35%), Gaps = 49/240 (20%)

Query: 22  LEISEG--VPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLD 79
           + I E    P+   VG +    VG+    Y+I    G + +T   ++   G+I     LD
Sbjct: 7   MHIREEIDSPLPHHVGKLTSS-VGNKNAMYIIE---GESANTIFKVQGYDGDIYAFERLD 62

Query: 80  RETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVV 139
           RE ++ Y L A  +   N R                              L     + ++
Sbjct: 63  REKKAEYELTAHIIDRRNNR-----------------------------SLEPP-SKFII 92

Query: 140 RVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIY--NTQ-RYNIVSGNTN 196
           +V D NDNAP F     +   PE +      T   A+D D      +    Y I+ G  N
Sbjct: 93  KVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG--N 150

Query: 197 NAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDG-GSPPLRGSMIVNVTIQD 255
             F +        +          LDRE+   Y ++++A D  G      +  V + + D
Sbjct: 151 EYFTVDD---SGVIFTA----RADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 350 DEIAEPGTSVFQISAFDQDEGINSVITYSLR-ENTDDHPSWFQIDSKSGLITMKSNVDCE 408
           +  +     V ++++       N    Y +  E+ +     F++    G I     +D E
Sbjct: 12  EIDSPLPHHVGKLTSSVG----NKNAMYIIEGESANTI---FKVQGYDGDIYAFERLDRE 64

Query: 409 TDPVPKLTVIATD-NGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL 467
                +LT    D     +L   +  ++ + D+NDN PIF Q  +N ++PE    G+ + 
Sbjct: 65  KKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVT 124

Query: 468 K 468
           K
Sbjct: 125 K 125

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  154 bits (391), Expect = 4e-44
 Identities = 35/246 (14%), Positives = 70/246 (28%), Gaps = 63/246 (25%)

Query: 263 FNQSRYFATVPENATVGTSIFQVFAT--DADAGSNGEVEYSIN---RRQSDKDGLFNIDS 317
           F++  Y+  +  +   GT +  V A     +   +  +   +    R +  ++    I  
Sbjct: 3   FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62

Query: 318 KSGLIFVNKALDFETKE------------------------------------------V 335
            +GL+++ ++LD  + E                                           
Sbjct: 63  DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122

Query: 336 HDLVPRFAVEISSFD------------EIAEPGTSVFQISAFDQDEGINSVITYSLRENT 383
           +   P  +                   E   PGT         Q       + Y L E  
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182

Query: 384 DDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATD-NGVPALSSSATVLVTIHDVND 442
                 F+    S  ++ +  +D E     +L  + T   G           VT++D +D
Sbjct: 183 GLP---FRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDD 239

Query: 443 NEPIFD 448
           + P F+
Sbjct: 240 SAPEFE 245

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  125 bits (315), Expect = 2e-33
 Identities = 32/220 (14%), Positives = 57/220 (25%), Gaps = 41/220 (18%)

Query: 151 FPSPFMSIEFPENTPRDVK-RTLNA-AKDRDLGIYNTQRYNI-----VSGNTNNAFRLSS 203
           F       +   +         ++A     +         ++        + NN  R+  
Sbjct: 3   FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62

Query: 204 HREKDGVLYLDLQINGVLDRETIPEYSL--------------VIEALDGGSPPLRGSMIV 249
                G+LYL       LD  +  + S+               +          +     
Sbjct: 63  ---DTGLLYL----QRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCA 115

Query: 250 NVTIQDVNDNQPI----------FNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVE 299
            V     N + P           F ++R    + EN   GT                 V 
Sbjct: 116 RVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVA 175

Query: 300 YSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLV 339
           Y +      +   F     S  +    ALD E +E ++LV
Sbjct: 176 YRL---LEGEGLPFRSAPDSLEVSTRWALDREQREKYELV 212

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  122 bits (308), Expect = 3e-32
 Identities = 41/259 (15%), Positives = 71/259 (27%), Gaps = 43/259 (16%)

Query: 23  EISEGVPVGTRVGFI-------GDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTK 75
           ++      GT + ++        +      G             +  + I+++TG +  +
Sbjct: 11  KLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQ 70

Query: 76  VPLDRETRSSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENV 135
             LD  +    S+         V +  F  P  +R                         
Sbjct: 71  RSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLRE-----------------GECQWPG 113

Query: 136 RVVVRVIDENDNAP----------TFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNT 185
              V     N + P           FP    S    EN P            + L    +
Sbjct: 114 CARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQIS 173

Query: 186 QRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALD-GGSPPLR 244
             Y ++ G     FR +        +         LDRE   +Y LV       G+    
Sbjct: 174 VAYRLLEGE-GLPFRSAPD---SLEVST----RWALDREQREKYELVAVCTVHAGAREEV 225

Query: 245 GSMIVNVTIQDVNDNQPIF 263
             +   VT+ D +D+ P F
Sbjct: 226 VMVPFPVTVYDEDDSAPEF 244

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 85.7 bits (212), Expect = 4e-19
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 29/147 (19%)

Query: 351 EIAEPGTSVFQISAF--DQDEGINSVITYSLRENTD---DHPSWFQIDSKSGLITMKSNV 405
                GT +  + A     +E  +  +   L           +W +I   +GL+ ++ ++
Sbjct: 14  VDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSL 73

Query: 406 DCET--------DPVPKLTVIATDNGVPA------LSSSATVLVTIHDVNDNEPI----- 446
           D  +           P LTV       P               V     N + P      
Sbjct: 74  DHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLK 133

Query: 447 -----FDQSFYNVTIPENKPKGSCILK 468
                F ++  +  I EN+P G+    
Sbjct: 134 PRELCFPETRPSFRIRENRPPGTFHQF 160

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 29/136 (21%), Positives = 39/136 (28%), Gaps = 41/136 (30%)

Query: 22  LEISEGVPVGTRVGFIG--DGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKVPL 78
             I E  P GT   F      F+       Y ++   G           ++ E+ T+  L
Sbjct: 146 FRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPF----RSAPDSLEVSTRWAL 201

Query: 79  DRETRSSYSL--VAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVR 136
           DRE R  Y L  V    +G                                       V 
Sbjct: 202 DREQREKYELVAVCTVHAGAR-------------------------------EEVVM-VP 229

Query: 137 VVVRVIDENDNAPTFP 152
             V V DE+D+AP F 
Sbjct: 230 FPVTVYDEDDSAPEFE 245

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score =  122 bits (310), Expect = 5e-34
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD 310
            +    NDN+P+F + +    +PENA VGTS+ Q+ ATDAD GSN E+ Y    + +   
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61

Query: 311 G-LFNIDSKSGLIFVNKALDFETKEVHDL 338
             LF +++ +GLI V ++LD E   +H +
Sbjct: 62  KRLFALNNTTGLITVQRSLDREETAIHKV 90

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 87.5 bits (218), Expect = 3e-21
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPS-WFQIDSKSGLITMKSNVDCETDPVP 413
            GTSV Q+ A D D G N+ I Y             F +++ +GLIT++ ++D E   + 
Sbjct: 29  VGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIH 88

Query: 414 KLTVIATDNGVPALSSSATVLVTIHDVN 441
           K+TV+A+D    +  + ATV + + DVN
Sbjct: 89  KVTVLASDGS--STPARATVTINVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 72.1 bits (178), Expect = 1e-15
 Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 14/123 (11%)

Query: 139 VRVIDENDNAPTFPSPFMSIEFPENTPRD-VKRTLNAAKDRDLGIYNTQRY---NIVSGN 194
                 NDN P F    + +  PEN P       L+A  D D+G     RY     V+  
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHAT-DADIGSNAEIRYIFGAQVAPA 60

Query: 195 TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQ 254
           T   F L++     G     + +   LDRE    + + + A DG S P R ++ +NVT  
Sbjct: 61  TKRLFALNN---TTG----LITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVT-- 111

Query: 255 DVN 257
           DVN
Sbjct: 112 DVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 55.9 bits (136), Expect = 5e-10
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
            +    NDN P+F +    V IPEN P G+ +++
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQ 35

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score =  121 bits (305), Expect = 3e-33
 Identities = 29/88 (32%), Positives = 39/88 (44%)

Query: 251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD 310
            +    NDN P F +S Y A + EN+  GT I Q+ A D D G NG++EY          
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61

Query: 311 GLFNIDSKSGLIFVNKALDFETKEVHDL 338
            L  +D  SG + V   +D E       
Sbjct: 62  RLLRLDETSGWLSVLHRIDREEVNQLRF 89

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score =  116 bits (294), Expect = 1e-31
 Identities = 32/91 (35%), Positives = 47/91 (51%)

Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPK 414
           PGT + Q+ A D D G+N  I Y     T+      ++D  SG +++   +D E     +
Sbjct: 29  PGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLR 88

Query: 415 LTVIATDNGVPALSSSATVLVTIHDVNDNEP 445
            TV+A D G P  +  ATV++ I D NDN P
Sbjct: 89  FTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 87.1 bits (217), Expect = 5e-21
 Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 139 VRVIDENDNAPTFPSPFMSIEFPENTPRDVK-RTLNAAKDRDLGIYNTQRYNI--VSGNT 195
                 NDN+P F       +  EN+        L AA D D+G+     Y     + + 
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAA-DLDVGVNGQIEYVFGAATESV 60

Query: 196 NNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
               RL       G L +       +DRE + +    + A D G PP      V + I+D
Sbjct: 61  RRLLRLDE---TSGWLSV----LHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKD 113

Query: 256 VNDNQP 261
            NDN P
Sbjct: 114 ENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 435 VTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILK 468
            +    NDN P F++S Y   + EN   G+ IL+
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQ 35

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 8/50 (16%)

Query: 107 GEIRTKVPLDRETRSSYSLV-------AIPLSGENVRVVVRVIDENDNAP 149
           G +     +DRE  +              P +     VV+ + DENDN P
Sbjct: 71  GWLSVLHRIDREEVNQLRFTVMARDRGQPPKTD-KATVVLNIKDENDNVP 119

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 98.5 bits (246), Expect = 4e-25
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%)

Query: 354 EPGTSVFQISAFDQDEGINSVITYSLR-ENTDDHP-SWFQIDSKSGLITMKSNVDCETDP 411
             G    ++         N  + YS+     D  P   F I+  SG +++   +D E   
Sbjct: 15  SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 74

Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIF 447
              L   A D     + +   +++ + D+NDN P F
Sbjct: 75  RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 79.2 bits (196), Expect = 3e-18
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTN----NAFRLSS 203
              +  P   I  PEN+     + L            + RY++     +      F ++ 
Sbjct: 1   GSDWVIP--PINLPENSRGPFPQELVRI-RSGRDKNLSLRYSVTGPGADQPPTGIFIIN- 56

Query: 204 HREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIF 263
                G L     +   LDRE I  + L   A+D     +   + + + + D+NDN+P F
Sbjct: 57  --PISGQLS----VTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 71.1 bits (175), Expect = 2e-15
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 272 VPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVNKALD 329
           +PEN+  G    ++    +    N  + YS+    +D+   G+F I+  SG + V K LD
Sbjct: 11  LPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 69

Query: 330 FETKEVHDLV 339
            E      L 
Sbjct: 70  RELIARFHLR 79

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDENDNAPTF 151
           G++    PLDRE  + + L A         +    + +V+ VID NDN P F
Sbjct: 60  GQLSVTKPLDRELIARFHLRAHAVDINGNQVEN-PIDIVINVIDMNDNRPEF 110

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSW--FQIDSKSGLITMKSNVDCE 408
           E       + +I + D  E     ITY         P +  F  +  +G + + S +D E
Sbjct: 23  EDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE 81

Query: 409 TDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQ 449
             P   LT  A D     +     + + + D+NDNEP+F Q
Sbjct: 82  ETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 177 DRDLGIYNTQRYNI----VSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLV 232
           D          Y      ++      F  +   +  G L     +  +LDRE  P + L 
Sbjct: 37  DLAEERGLKITYKYTGKGITEPPFGIFVFN---KDTGELN----VTSILDREETPFFLLT 89

Query: 233 IEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQ 265
             ALD     +   + + + + D+NDN+P+F Q
Sbjct: 90  GYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 67.4 bits (165), Expect = 7e-14
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 268 YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVN 325
                 E+ +    I ++  +D       ++ Y    +   +   G+F  +  +G + V 
Sbjct: 17  VALREGEDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT 75

Query: 326 KALDFETKEVHDLV 339
             LD E      L 
Sbjct: 76  SILDREETPFFLLT 89

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 58.5 bits (142), Expect = 9e-11
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 13/93 (13%)

Query: 70  GEIRTKVPLDRETRSSYSLVAIPLSGENVRVVSFY---EPGEIRTKVPLDRETRSSYSLV 126
            +I + +  +R  + +Y      ++     +  F    + GE+     LDRE    + L 
Sbjct: 32  AKIHSDLAEERGLKITYKYTGKGITEPPFGI--FVFNKDTGELNVTSILDREETPFFLLT 89

Query: 127 AI-------PLSGENVRVVVRVIDENDNAPTFP 152
                     +    + + ++V+D NDN P F 
Sbjct: 90  GYALDARGNNVEK-PLELRIKVLDINDNEPVFT 121

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 75.5 bits (186), Expect = 5e-17
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 355 PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPK 414
               V ++   D+ EG    +T    +        F+I+  +G +++   +D ET    +
Sbjct: 18  FPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGT--FRINENTGSVSVTRTLDRETIATYQ 75

Query: 415 LTVIATDNGVPALSSSATVLVTIHD 439
           L V  TD     L     + V + D
Sbjct: 76  LYVETTDASGKTLEGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 69.3 bits (170), Expect = 8e-15
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 271 TVPEN--ATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKAL 328
            +PEN        + +V  +D   GS   +         D  G F I+  +G + V + L
Sbjct: 9   LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKG--VDQDPKGTFRINENTGSVSVTRTL 66

Query: 329 DFETKEVHDLV 339
           D ET   + L 
Sbjct: 67  DRETIATYQLY 77

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 66.6 bits (163), Expect = 6e-14
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 158 IEFPENTPRDVKRTLN--AAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDL 215
           I  PEN  +   R +      DR  G         V  +    FR++   E  G +    
Sbjct: 8   ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRIN---ENTGSVS--- 61

Query: 216 QINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
            +   LDRETI  Y L +E  D     L G + + V + D
Sbjct: 62  -VTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 26 EGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDL----SIEQNTGEIRTKVPLDRE 81
          +  P    VG + D      G  + +    G  VD D      I +NTG +     LDRE
Sbjct: 14 QRQPFPRDVGKVVD-SDRPEGSKFRLT---GKGVDQDPKGTFRINENTGSVSVTRTLDRE 69

Query: 82 TRSSYSLVA 90
          T ++Y L  
Sbjct: 70 TIATYQLYV 78

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 8/44 (18%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVID 143
           G +     LDRET ++Y L           L G  V + V VID
Sbjct: 58  GSVSVTRTLDRETIATYQLYVETTDASGKTLEGP-VPLEVIVID 100

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 340 PRFAVEISSFDEIAE--PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSW--FQIDSK 395
           P  +  I       E   G     +     ++     + YS+     D P    F I+ +
Sbjct: 2   PLGSWVIPPI-SCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60

Query: 396 SGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHD 439
           +G + +   +D E      L   A  +   A+     +L+T+ D
Sbjct: 61  TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 72.4 bits (178), Expect = 8e-16
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 261 PIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSK 318
           P+ +      + PEN   G     +    ++    G+V YSI  + +D    G+F I+ +
Sbjct: 2   PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60

Query: 319 SGLIFVNKALDFETKEVHDL 338
           +G + V + LD E    + L
Sbjct: 61  TGWLKVTEPLDRERIATYTL 80

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 61.2 bits (149), Expect = 5e-12
 Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 12/112 (10%)

Query: 148 APTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTN----NAFRLSS 203
            P        I  PEN      + L      +        Y+I     +      F +  
Sbjct: 1   GPLGSWVIPPISCPENEKGPFPKNL-VQIKSNKDKEGKVFYSITGQGADTPPVGVFIIER 59

Query: 204 HREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
                G L     +   LDRE I  Y+L   A+      +   M + +T+ D
Sbjct: 60  E---TGWLK----VTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 64 SIEQNTGEIRTKVPLDRETRSSYSLVAI 91
           IE+ TG ++   PLDRE  ++Y+L + 
Sbjct: 56 IIERETGWLKVTEPLDRERIATYTLFSH 83

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVIDE 144
           G ++   PLDRE  ++Y+L +         +    + +++ V D+
Sbjct: 62  GWLKVTEPLDRERIATYTLFSHAVSSNGNAVED-PMEILITVTDQ 105

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
             SV ++   +  EG    ++    +   D    F+I+  SG +++   +D E     +L
Sbjct: 18  PRSVGKVIRSEGTEGAKFRLSGKGVDQ--DPKGIFRINEISGDVSVTRPLDREAIANYEL 75

Query: 416 TVIATDNGVPALSSSATVLVTIHD 439
            V  TD     +     + +++ D
Sbjct: 76  EVEVTDLSGKIIDGPVRLDISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 64.8 bits (158), Expect = 3e-13
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 151 FPSPFMSIEFPENTPRDVKRTLNA--AKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKD 208
             +P   I  PEN      R++      +   G         V  +    FR++   E  
Sbjct: 3   LATP---ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRIN---EIS 56

Query: 209 GVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
           G +     +   LDRE I  Y L +E  D     + G + +++++ D
Sbjct: 57  GDVS----VTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 63.6 bits (155), Expect = 7e-13
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 271 TVPENA--TVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKAL 328
            +PEN       S+ +V  ++   G+   +         D  G+F I+  SG + V + L
Sbjct: 8   LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKG--VDQDPKGIFRINEISGDVSVTRPL 65

Query: 329 DFETKEVHDL 338
           D E    ++L
Sbjct: 66  DREAIANYEL 75

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 43 GDSGPPYLIVPVPGSAVDTDL----SIEQNTGEIRTKVPLDRETRSSYSLVA 90
          G  G  + +    G  VD D      I + +G++    PLDRE  ++Y L  
Sbjct: 29 GTEGAKFRLS---GKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEV 77

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 356 GTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL 415
              V ++   D+  G    +         +    F+I+  SG +++   +D E  P  +L
Sbjct: 18  PKIVGRVVVSDRIPGSKIKLYGKGV--DQEPKGIFKINENSGEVSVTKALDREAIPSYQL 75

Query: 416 TVIATDNGVPALSSSATVLVTIHD 439
            V  TD     +     + + + D
Sbjct: 76  QVETTDENGKTIEGPVDLEILVID 99

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 69.3 bits (170), Expect = 7e-15
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 157 SIEFPENTPRDVKRTLN--AAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLD 214
           SI  PEN      + +      DR  G         V       F+++   E  G +   
Sbjct: 6   SISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKIN---ENSGEVS-- 60

Query: 215 LQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
             +   LDRE IP Y L +E  D     + G + + + + D
Sbjct: 61  --VTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 271 TVPENAT--VGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKAL 328
           ++PEN        + +V  +D   GS  ++         +  G+F I+  SG + V KAL
Sbjct: 8   SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKG--VDQEPKGIFKINENSGEVSVTKAL 65

Query: 329 DFETKEVHDLV 339
           D E    + L 
Sbjct: 66  DREAIPSYQLQ 76

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 44 DSGPPYLIVPVPGSAVDTDL----SIEQNTGEIRTKVPLDRETRSSYSLVAI 91
            G    +    G  VD +      I +N+GE+     LDRE   SY L   
Sbjct: 30 IPGSKIKLY---GKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVE 78

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 8/44 (18%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI-------PLSGENVRVVVRVID 143
           GE+     LDRE   SY L           + G  V + + VID
Sbjct: 57  GEVSVTKALDREAIPSYQLQVETTDENGKTIEG-PVDLEILVID 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 4/90 (4%)

Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
           E              D D G +  I Y L          F ID  +G I     +D E  
Sbjct: 13  EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAG--IVFTIDDTTGDIHAIQRLDREER 69

Query: 411 PVPKLTVIATDNGV-PALSSSATVLVTIHD 439
               L   A D      +   +  ++ I D
Sbjct: 70  SQYTLRAQALDRRTGRPMEPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 262 IFNQSRYFATVPENAT-VGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSG 320
           ++NQ      V E  T           +D D G +G ++Y +         +F ID  +G
Sbjct: 4   VWNQ----FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYIL--SGEGAGIVFTIDDTTG 56

Query: 321 LIFVNKALDFETKEVHDLV 339
            I   + LD E +  + L 
Sbjct: 57  DIHAIQRLDREERSQYTLR 75

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 162 ENTPRDVKRTLNAAKDRDLGIYNTQ-RYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGV 220
           E T  D         D D G  +   +Y +        F +    +  G ++        
Sbjct: 13  EYTGTDPLYVGKLHSDMDRG--DGSIKYILSGEGAGIVFTID---DTTGDIHA----IQR 63

Query: 221 LDRETIPEYSLVIEALDGGS-PPLRGSMIVNVTIQD 255
           LDRE   +Y+L  +ALD  +  P+       + IQD
Sbjct: 64  LDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 56 GSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVA 90
          G       +I+  TG+I     LDRE RS Y+L A
Sbjct: 42 GEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRA 76

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)

Query: 107 GEIRTKVPLDRETRSSYSLVAI--------PLSGENVRVVVRVID 143
           G+I     LDRE RS Y+L A         P+  E    ++++ D
Sbjct: 56  GDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPE-SEFIIKIQD 99

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 346 ISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNV 405
           +   +E + P   +      D D G +  I Y L  +     + FQI+  +G I     +
Sbjct: 7   MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAG--TIFQINDITGDIHAIKRL 63

Query: 406 DCETDPVPKLTVIATD-NGVPALSSSATVLVTIHD 439
           D E      LT  A D      L   +  ++ + D
Sbjct: 64  DREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 57.8 bits (140), Expect = 6e-11
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 262 IFNQSRYFATVPENATV-GTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSG 320
           ++NQ      V E  +     +     TD D G + +++Y +         +F I+  +G
Sbjct: 3   VWNQ----MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYIL--SGDGAGTIFQINDITG 55

Query: 321 LIFVNKALDFETKEVHDLV 339
            I   K LD E K  + L 
Sbjct: 56  DIHAIKRLDREEKAEYTLT 74

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 11/104 (10%)

Query: 153 SPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLY 212
           +    +E  E +  +         D D G     +Y +        F+++   +  G ++
Sbjct: 5   NQMFVLE--EFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQIN---DITGDIH 58

Query: 213 LDLQINGVLDRETIPEYSLVIEALD-GGSPPLRGSMIVNVTIQD 255
                   LDRE   EY+L  +A+D   + PL       + +QD
Sbjct: 59  A----IKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 56 GSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVA 90
          G    T   I   TG+I     LDRE ++ Y+L A
Sbjct: 41 GDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTA 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 5e-12
 Identities = 86/576 (14%), Positives = 174/576 (30%), Gaps = 171/576 (29%)

Query: 2   RLWRLLWLLAAVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVP----GS 57
              RL W L +          +  E V       F+ +    +    +L+ P+       
Sbjct: 63  GTLRLFWTLLS----------KQEEMVQK-----FVEEVLRINY--KFLMSPIKTEQRQP 105

Query: 58  AVDTDLSIEQ-----NTGEIRTKVPLDRE------TRSSYSL-----VAI---PLSGENV 98
           ++ T + IEQ     N  ++  K  + R        ++   L     V I     SG+  
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 99  RVVSFYEPGEIRTKVP-----LD-RETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFP 152
             +      +++ K+      L+ +   S  +++      E ++ ++  ID N  +    
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQKLLYQIDPNWTSR--S 217

Query: 153 SPFMSIEFPENTPRDVKRTLNAAKD--RDL----GIYNTQRYN---------IVSGNTNN 197
               +I+   ++ +   R L  +K     L     + N + +N         + +     
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 198 AFRLSSHREKDGVLYLDLQINGVLDRET---------IPEYSLVIEALDGGSPPLRGSMI 248
              LS+       + LD     +   E               L  E L     P R S+I
Sbjct: 278 TDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRRLSII 333

Query: 249 ---------------------VNVTIQ-DVNDNQPIFNQSRY--FATVPENATVGTSIFQ 284
                                +   I+  +N  +P   +  +   +  P +A + T +  
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 285 VFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETK-------EVHD 337
           +   D       +V   +N  +  K  L     K   I +  ++  E K        +H 
Sbjct: 394 LIWFDVI---KSDVMVVVN--KLHKYSLVEKQPKESTISIP-SIYLELKVKLENEYALHR 447

Query: 338 -LVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLR-----ENTDDHPSWFQ 391
            +V  + +   +FD           +     D+   S I + L+     E        F 
Sbjct: 448 SIVDHYNI-PKTFDS--------DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 392 ----IDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIF 447
               ++ K                     +        A ++S ++L T+  +       
Sbjct: 499 DFRFLEQK---------------------IRHDS---TAWNASGSILNTLQQLK------ 528

Query: 448 DQSFYNVTIPENKPKGSCILKSIFYDIFNISEHSFK 483
              FY   I +N PK   ++ +I   +  I E+   
Sbjct: 529 ---FYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 18/98 (18%)

Query: 173 NAAKDRDLGIYN--TQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETI---- 226
           N AKD  L +    T+   I+S       +L    +K G L     +   LDRE +    
Sbjct: 29  NLAKDLGLSLRELITRGAQILSKGNKQLLQLE---QKSGNLL----LKEKLDREELCGST 81

Query: 227 PEYSLVIEALDGGSPPLRGSMI-VNVTIQDVNDNQPIF 263
               L  + L     P++   I   + +QDVND+ P F
Sbjct: 82  NPCILHFQVLLKS--PVQ--FIQGEIQLQDVNDHAPEF 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	483
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.97
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.97
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.94
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.93
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.91
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.89
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.85
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.83
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.82
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.8
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.77
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.73
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.73
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.73
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.71
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.7
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.7
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.69
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.69
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.67
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.65
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.63
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.63
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.61
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.51
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.35
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	91.03
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	89.24
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	87.92
3gin_A	160	Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calci	84.41
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	82.42

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=2.8e-71  Score=611.85  Aligned_cols=452  Identities=23%  Similarity=0.365  Sum_probs=324.9

Q ss_pred             hhhHHHHHHH--------------HhhhcCceEEEEEe-CCCCCCeEEEEEEccCCCCC-CCCEEEEecCCCCCcccEEE
Q psy8629           2 RLWRLLWLLA--------------AVAADEHLRDLEIS-EGVPVGTRVGFIGDGFVGDS-GPPYLIVPVPGSAVDTDLSI   65 (483)
Q Consensus         2 ~~~~~~~~~~--------------~~~~~~~~~~~~v~-En~~~gt~V~~v~a~d~d~~-~~~y~i~~~~~~~~~~~F~I   65 (483)
                      .+|.+++|++              ++.|.+..|.++|+ |++++|+.|++++|+|.|.+ .+.|++..       ..|+|
T Consensus        10 ~~~~~~~~~~~q~~~~~~~d~ndn~P~F~~~~y~~~v~~e~~~~Gt~V~~v~a~D~D~n~~i~Y~~~~-------~~F~I   82 (880)
T 1q55_A           10 SVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGD-------SRFRV   82 (880)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHhhheeeecccccCCCCccCCCeEEEEechhhCCCCCEEEEEEEEeCCCCceEEEEeCC-------CCEEE
Confidence            4788876553              45799999999999 99999999999999998844 46888742       28999


Q ss_pred             eCCccEEEeCccCCccCCceeeEEEEecCCcc-----------ee-----------------------------------
Q psy8629          66 EQNTGEIRTKVPLDRETRSSYSLVAIPLSGEN-----------VR-----------------------------------   99 (483)
Q Consensus        66 d~~tG~i~~~~~LD~E~~~~y~l~v~a~d~~~-----------~~-----------------------------------   99 (483)
                      ++ +|.|+++++||||..  |.|.|.|.|++.           +.                                   
T Consensus        83 d~-~G~i~~~~~Ld~e~~--~~l~V~A~D~~~~~~~~~v~v~~v~~~~~~~~~~~~~~~~~p~f~~~~~~~~r~~r~~~~  159 (880)
T 1q55_A           83 LP-DGTVLVKRHVKLHKD--TKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVI  159 (880)
T ss_dssp             ----------------------------------------------------------------------------CCCC
T ss_pred             CC-CceEEECCccccccc--eEEEEEEEcCCCCeEEEEEEEEEecccccccccccccccCcccccccccccceeeccccc
Confidence            98 799999999999987  777777766421           00                                   


Q ss_pred             ----------------E-----------------------------EEee-cCcEEEEcccCCccccceEEEEEEeCCCC
Q psy8629         100 ----------------V-----------------------------VSFY-EPGEIRTKVPLDRETRSSYSLVAIPLSGE  133 (483)
Q Consensus       100 ----------------~-----------------------------~~~~-~~g~l~~~~~ld~e~~~~~~~~~~~~~~~  133 (483)
                                      +                             |.+. ++|.|+++++||||.+..|.|.+.+.|++
T Consensus       160 ~~~~v~En~~~~~~~~v~~v~~d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D~g  239 (880)
T 1q55_A          160 PPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSEN  239 (880)
T ss_dssp             CCEEEESSCCSSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESS
T ss_pred             cceEEeCCCCCCCCeEEEEEeeCCCCCceEEEEEECCCCCCCcCCEEEEECCcCEEEECCccCccccCccEEEEEEEECC
Confidence                            0                             0000 26889999999999999999999988753


Q ss_pred             ------eEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCC---CCceEEEEEEeCC----CCCceE
Q psy8629         134 ------NVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLG---IYNTQRYNIVSGN----TNNAFR  200 (483)
Q Consensus       134 ------~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~---~~~~~~y~l~~~~----~~~~F~  200 (483)
                            ++.|.|+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.|   .|+.++|+|.++.    ..+.|.
T Consensus       240 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~  319 (880)
T 1q55_A          240 GSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFT  319 (880)
T ss_dssp             SCBCSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEE
T ss_pred             CCceeeeEEEEEEEEecCCCCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEE
Confidence                  589999999999999999999999999999999999999999999998   6899999999876    347999


Q ss_pred             EecccCCCceEEEEEEe-ccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCC
Q psy8629         201 LSSHREKDGVLYLDLQI-NGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVG  279 (483)
Q Consensus       201 i~~~~~~~g~~~~~l~~-~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g  279 (483)
                      |++.   +|.    |.+ .+.||||....|.|+|+|+|+|+|+++++++|+|+|.|+|||+|.|....|.++|+|| ++|
T Consensus       320 Id~~---tG~----I~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g  391 (880)
T 1q55_A          320 INRE---TGV----ISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIG  391 (880)
T ss_dssp             ECTT---TCE----EEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCC
T ss_pred             EccC---Ccc----EEEecccCCHHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccceEEEeecC-CCC
Confidence            9984   566    555 4789999999999999999999999999999999999999999999999999999999 999


Q ss_pred             cEEEEEEEEeCC--CCCccEEEEEEEecCCCCCcceEEe--C--CccEEEEcccCCCcccceeeeEeEE-----------
Q psy8629         280 TSIFQVFATDAD--AGSNGEVEYSINRRQSDKDGLFNID--S--KSGLIFVNKALDFETKEVHDLVPRF-----------  342 (483)
Q Consensus       280 t~v~~v~a~D~D--~~~~~~i~y~i~~~~~~~~~~F~Id--~--~tG~l~~~~~LD~E~~~~~~l~v~~-----------  342 (483)
                      +.|+++.|+|+|  .+.|+.++|+|..   +..+.|.|+  +  .+|.|++.++||||....|.|+|+.           
T Consensus       392 t~V~~v~A~D~D~~~g~n~~v~Ysi~~---~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~  468 (880)
T 1q55_A          392 FEVQRLSVTDLDMPGTPAWQAVYKIRV---NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLP  468 (880)
T ss_dssp             CEEEEECBCCCSCTTSTTSCEECCBSC---CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCC
T ss_pred             cEEEEEEEECCCCCCCCCceEEEEEec---CCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCc
Confidence            999999999999  6789999999953   567899995  3  6899999999999999999998872           


Q ss_pred             ------EEEee---------------eeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEE
Q psy8629         343 ------AVEIS---------------SFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITM  401 (483)
Q Consensus       343 ------~~~v~---------------~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~  401 (483)
                            .+.|.               .|.|++++|+.|+++.|+|+|.|.|+.++|+|..   +..++|.|++.+|.|++
T Consensus       469 sst~tV~I~V~DvND~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~---~~~~~F~Id~~tG~I~~  545 (880)
T 1q55_A          469 TSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN---DPARWLTVNKDNGIVTG  545 (880)
T ss_dssp             CCCEEEEEEEECCCCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC---CSSCCCEEETTTTEEEE
T ss_pred             ceeEEEEEEEEeCCCCCEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcEEEEECC---CCCCCEEEeCCccEEEE
Confidence                  22221               5789999999999999999999999999999983   45689999999999999


Q ss_pred             cccCCCCCC----CeeEEEEEEEECCcCCceEEEEEEEEEEecCCCCCeecCCceEEEEcCCCCCCcEEEEEEEEeCCCC
Q psy8629         402 KSNVDCETD----PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNI  477 (483)
Q Consensus       402 ~~~lD~E~~----~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~V~E~~~~g~~v~~v~a~D~D~~  477 (483)
                      .+.||||..    ..|+|+|+|+|+|.|+++++++|+|+|.|+|||+|.|.+.  ...|+|+.++|+ +  |.|+|+|.+
T Consensus       546 ~~~LDrE~~~~~~~~y~l~V~A~D~g~p~~sst~tv~I~V~DvNDn~P~f~~~--~~~v~E~~~~g~-v--v~A~D~D~~  620 (880)
T 1q55_A          546 NGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPR--VFTMCDQNPEPQ-V--LTISDADIP  620 (880)
T ss_dssp             CSCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCCCCCSCCCBSCC--CEEECSSSCCCE-E--EEBCCSSCT
T ss_pred             CCccCcccccCCCCEEEEEEEEEECCCCCcEeEEEEEEEEEeCCCCCCCccCc--ceEEecCCCCCe-E--EEEecCCCC
Confidence            999999997    8999999999999999999999999999999999999854  678999999998 3  999999966


Q ss_pred             CC---CcC
Q psy8629         478 SE---HSF  482 (483)
Q Consensus       478 ~~---~~~  482 (483)
                      .+   ++|
T Consensus       621 ~n~~~~~y  628 (880)
T 1q55_A          621 PNTYPYKV  628 (880)
T ss_dssp             TTTCCCCC
T ss_pred             CCCceEEE
Confidence            53   555

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=1.8e-69  Score=572.32  Aligned_cols=407  Identities=28%  Similarity=0.394  Sum_probs=359.7

Q ss_pred             EEEEeCCCC--CCeEEEEEEccCCC-CCCCCEEEEecCC-CCCcccEEEeCCccEEEeCccCCccCCceeeEEEEecCCc
Q psy8629          21 DLEISEGVP--VGTRVGFIGDGFVG-DSGPPYLIVPVPG-SAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGE   96 (483)
Q Consensus        21 ~~~v~En~~--~gt~V~~v~a~d~d-~~~~~y~i~~~~~-~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d~~   96 (483)
                      .++|+||.+  .++.|++++| |.| +..+.|+|..... ..+.++|.|++.||.|++.++||||+.+.|.|.+.|.|++
T Consensus         6 ~~~v~En~~~~~~~~v~~v~a-d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~a~d~~   84 (550)
T 3q2v_A            6 PISCPENEKGEFPKNLVQIKS-NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN   84 (550)
T ss_dssp             CEEEETTCCSSSSEEEEECEE-GGGGTSCEEEEEESBTTTBSSCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred             CEEEeCCCCCCcCeEEEEEec-CCCCCceEEEEEECCCCCCCCCceEEEeCCceEEEECCccCcccCCeeEEEEEEEeCC
Confidence            578999984  6899999999 655 5678999985321 2234689999999999999999999999999999888754


Q ss_pred             ceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEE
Q psy8629          97 NVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAK  176 (483)
Q Consensus        97 ~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~  176 (483)
                      ..                               .-..++.|.|+|.|+|||+|.|.+..|.+.|+|++++|+.++++.|+
T Consensus        85 ~~-------------------------------~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~E~~~~Gt~v~~v~A~  133 (550)
T 3q2v_A           85 GE-------------------------------AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSAT  133 (550)
T ss_dssp             SC-------------------------------BCSCCEEEEEEEECCSCCCCCBSCSEEEEEEETTCCTTCEEEECCBC
T ss_pred             CC-------------------------------cccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEE
Confidence            21                               01135789999999999999999999999999999999999999999


Q ss_pred             eCCCC---CCceEEEEEEeCC----CCCceEEecccCCCceEEEEEEe-ccCCCCCCCCEEEEEEEEEECCCCCeeeEEE
Q psy8629         177 DRDLG---IYNTQRYNIVSGN----TNNAFRLSSHREKDGVLYLDLQI-NGVLDRETIPEYSLVIEALDGGSPPLRGSMI  248 (483)
Q Consensus       177 D~D~~---~~~~~~y~l~~~~----~~~~F~i~~~~~~~g~~~~~l~~-~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~  248 (483)
                      |+|.|   .|+.++|+|.+++    ..+.|.|++.   +|.    +.+ .++||||..+.|.|+|+|+|+|+|+++++++
T Consensus       134 D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~---tG~----i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t~~  206 (550)
T 3q2v_A          134 DADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRD---TGV----ISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAK  206 (550)
T ss_dssp             CCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTT---TCE----EEECSSCCCTTTCSEEEEEEEEESGGGTSCCCEEE
T ss_pred             eCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCC---CeE----EEEccCCCCcccCcEEEEEEEEEcCCCCCeeEEEE
Confidence            99998   7899999998764    2468999984   566    444 5899999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCcc--EEEEEEEecCCCCCcceEEe----CCccEE
Q psy8629         249 VNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNG--EVEYSINRRQSDKDGLFNID----SKSGLI  322 (483)
Q Consensus       249 v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~--~i~y~i~~~~~~~~~~F~Id----~~tG~l  322 (483)
                      |+|+|+|+|||+|.|.+..|.+.|+|+ +.|+.|+++.|+|+|.+.++  .++|+|..   +..+.|.|+    +.+|.|
T Consensus       207 v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~---~~~~~F~i~~d~~~~tG~i  282 (550)
T 3q2v_A          207 AVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVN---DPDQQFVVVTDPTTNDGIL  282 (550)
T ss_dssp             EEEEEECCSCSCCEESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTTTCEEEEESS---CSSCCEEEEECTTTCCEEE
T ss_pred             EEEEecccCCCCCEEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCcEEEEEEEEe---CCCCcEEEEecCCCccEEE
Confidence            999999999999999999999999999 99999999999999998776  46799953   678899998    789999


Q ss_pred             EEcccCCCcccceeeeEeEEEE-----------------Eee---------------eeeccCCCCeEEEEEEEEeCCCC
Q psy8629         323 FVNKALDFETKEVHDLVPRFAV-----------------EIS---------------SFDEIAEPGTSVFQISAFDQDEG  370 (483)
Q Consensus       323 ~~~~~LD~E~~~~~~l~v~~~~-----------------~v~---------------~v~E~~~~gt~v~~v~a~D~D~~  370 (483)
                      ++.++||||....|.|+|+...                 .|.               .+.|++++|+.|+++.|+|+|.|
T Consensus       283 ~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~DvND~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g  362 (550)
T 3q2v_A          283 KTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTF  362 (550)
T ss_dssp             EESSCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEECCCCCCEESSSSCEEEEETTCCSSCEEEECCEECCCCS
T ss_pred             EecccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEEecCCCCeEcCcceEEEEecCCCCCCEEEEEeCCCCCCC
Confidence            9999999999999999987321                 111               68899999999999999999999


Q ss_pred             CCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCC-----CeeEEEEEEEECCcCCceEEEEEEEEEEecCCCCC
Q psy8629         371 INSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD-----PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEP  445 (483)
Q Consensus       371 ~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~-----~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P  445 (483)
                      .|+.++|+|..   +..++|.|++.+|.|++.+.||||..     ..|.|+|+|+|+|.|+++++++|+|+|+|+|||+|
T Consensus       363 ~n~~i~y~i~~---~~~~~f~id~~tG~i~~~~~lDrE~~~~~~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  439 (550)
T 3q2v_A          363 MDQKITYRIWR---DTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAP  439 (550)
T ss_dssp             TTCCCEEEEEE---CTTCCEEECTTTCEEEECSCCCTTCTTTCCSSEEEEEEEEECCSSSCCCEEEEEEEEEECCCCCCC
T ss_pred             CCCCEEEEEec---CCCCcEEEeCCCcEEEECCccCcccccccCCCEEEEEEEEEeCCCCcceeEEEEEEEEEeCCCCCC
Confidence            99999999973   45689999999999999999999998     99999999999999999999999999999999999


Q ss_pred             eecCCceEEEEcCCCCCCcEEEEEEEEeCCCCC
Q psy8629         446 IFDQSFYNVTIPENKPKGSCILKSIFYDIFNIS  478 (483)
Q Consensus       446 ~f~~~~~~~~V~E~~~~g~~v~~v~a~D~D~~~  478 (483)
                      .|.+  |...|+|+.+.|++   |+|+|+|.+.
T Consensus       440 ~~~~--~~~~v~e~~~~~~~---v~A~D~D~~~  467 (550)
T 3q2v_A          440 IPEP--RNMQFCQRNPQPHI---ITILDPDLPP  467 (550)
T ss_dssp             EESC--SSCEEESSSCCCEE---EEEECCSCTT
T ss_pred             cCcC--cccceeecCCCcEE---EEEECCCCCC
Confidence            9985  56789999998865   9999999665

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=1.4e-69  Score=572.22  Aligned_cols=413  Identities=26%  Similarity=0.391  Sum_probs=362.0

Q ss_pred             eEEEEEeCCCC--CCeEEEEEEccCCC-CCCCCEEEEecCCC-CCcccEEEeCCccEEEeCccCCccCCceeeEEEEecC
Q psy8629          19 LRDLEISEGVP--VGTRVGFIGDGFVG-DSGPPYLIVPVPGS-AVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLS   94 (483)
Q Consensus        19 ~~~~~v~En~~--~gt~V~~v~a~d~d-~~~~~y~i~~~~~~-~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d   94 (483)
                      .|.++|+||++  .+..|+++.+ |.| +..+.|+|...... .+.++|.|++.+|+|+++++||||....|.|.+.|.|
T Consensus        10 ~~~~~v~En~~g~~~~~v~~~~~-d~d~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D   88 (546)
T 1l3w_A           10 IPPIKVSENERGPFPKRLVQIKS-NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVS   88 (546)
T ss_dssp             CCCEEEESSCCSSSCEEEEECCC-SGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEE
T ss_pred             cceeEecCCCCCCCCcEEEEEEc-CCCCCceEEEEEECCCCCCCCCceEEEeCCccEEEECCcCCcccCceEEEEEEEEe
Confidence            57789999998  3456888876 544 56789999864221 1345899999999999999999999999999999888


Q ss_pred             CcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEE
Q psy8629          95 GENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNA  174 (483)
Q Consensus        95 ~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~  174 (483)
                      ++..                               .-..++.|.|+|.|+|||+|.|....|.+.|+|++++|+.|+++.
T Consensus        89 ~~~~-------------------------------~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~gt~v~~v~  137 (546)
T 1l3w_A           89 ENGS-------------------------------PVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVS  137 (546)
T ss_dssp             SSSC-------------------------------BCSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCCSSEEEEECC
T ss_pred             CCCC-------------------------------cccceEEEEEEEEecccCcCEecCceeEEEEECCCCCCCEEEEEE
Confidence            6521                               112357899999999999999999999999999999999999999


Q ss_pred             EEeCCCC---CCceEEEEEEeCC----CCCceEEecccCCCceEEEEEEe-ccCCCCCCCCEEEEEEEEEECCCCCeeeE
Q psy8629         175 AKDRDLG---IYNTQRYNIVSGN----TNNAFRLSSHREKDGVLYLDLQI-NGVLDRETIPEYSLVIEALDGGSPPLRGS  246 (483)
Q Consensus       175 a~D~D~~---~~~~~~y~l~~~~----~~~~F~i~~~~~~~g~~~~~l~~-~~~LD~E~~~~~~l~v~a~D~g~p~~~~~  246 (483)
                      |+|+|.|   .|+.++|+|.++.    ..+.|.|++.   +|.    |.+ .++||||..+.|.|+|+|+|+|+|+++++
T Consensus       138 A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~---tG~----i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~~  210 (546)
T 1l3w_A          138 ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRE---TGV----ISLIGTGLDREKFPEYTLTVQATDLEGAGLSVE  210 (546)
T ss_dssp             EECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTT---TCE----EEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEE
T ss_pred             EEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCC---Cce----EEEeccCCCcccCceEEEEEEEEECCCCCcceE
Confidence            9999998   6899999999876    3479999984   566    555 47999999999999999999999999999


Q ss_pred             EEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCC--CCCccEEEEEEEecCCCCCcceEEe----CCcc
Q psy8629         247 MIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDAD--AGSNGEVEYSINRRQSDKDGLFNID----SKSG  320 (483)
Q Consensus       247 ~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D--~~~~~~i~y~i~~~~~~~~~~F~Id----~~tG  320 (483)
                      +.|+|+|.|+|||+|.|.+..|.+.|+|+ +.|+.|+++.|+|+|  .+.++.++|+|..   +..+.|.|+    ..+|
T Consensus       211 ~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~---~~~~~F~I~~d~~~~~G  286 (546)
T 1l3w_A          211 GKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV---NEGGFFNITTDPESNQG  286 (546)
T ss_dssp             CCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSC---CTTSCEEEEECTTTCCE
T ss_pred             EEEEEEEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEe---CCCceEEEEecCCCCeE
Confidence            99999999999999999999999999999 999999999999999  6789999999953   567899996    3689


Q ss_pred             EEEEcccCCCcccceeeeEeEE-----------------EEEee---------------eeeccCCCCeEEEEEEEEeCC
Q psy8629         321 LIFVNKALDFETKEVHDLVPRF-----------------AVEIS---------------SFDEIAEPGTSVFQISAFDQD  368 (483)
Q Consensus       321 ~l~~~~~LD~E~~~~~~l~v~~-----------------~~~v~---------------~v~E~~~~gt~v~~v~a~D~D  368 (483)
                      .|+++++||||....|.|+|+.                 .+.|.               .|.|++++|+.|+++.|+|+|
T Consensus       287 ~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~DvND~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D  366 (546)
T 1l3w_A          287 ILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPD  366 (546)
T ss_dssp             EEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCCCCEESSCEECCCBCTTCCSSEEEEECCEECCC
T ss_pred             EEEECccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEcCCCCCcEecceEEEEEeCCCCCCCEEEEEEEECCC
Confidence            9999999999999999998872                 22221               578999999999999999999


Q ss_pred             CCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCC----CeeEEEEEEEECCcCCceEEEEEEEEEEecCCCC
Q psy8629         369 EGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD----PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNE  444 (483)
Q Consensus       369 ~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~----~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~  444 (483)
                      .|.|+.++|+|..   +..++|.|++.+|.|++.+.||||..    ..|.|+|+|+|+|.|+++++++|+|+|+|+|||+
T Consensus       367 ~g~n~~i~ysi~~---~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~DvNDn~  443 (546)
T 1l3w_A          367 KQQIQKLSYFIGN---DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNG  443 (546)
T ss_dssp             TTCCCCEEEEECC---CSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCCCCCSC
T ss_pred             CCCCceEEEEECC---CCCCcEEEeCCcEEEEECCccCCccccCCCCEEEEEEEEEECCCCCcEeEEEEEEEEEECCCCc
Confidence            9999999999983   35689999999999999999999997    8999999999999999999999999999999999


Q ss_pred             CeecCCceEEEEcCCCCCCcEEEEEEEEeCCCCCC---CcC
Q psy8629         445 PIFDQSFYNVTIPENKPKGSCILKSIFYDIFNISE---HSF  482 (483)
Q Consensus       445 P~f~~~~~~~~V~E~~~~g~~v~~v~a~D~D~~~~---~~~  482 (483)
                      |.|.+.  ...|+|+.++|+ +  |.|+|+|.+..   ++|
T Consensus       444 P~f~~~--~~~v~e~~~~g~-v--v~A~D~D~~~n~~~~~y  479 (546)
T 1l3w_A          444 PVPSPR--VFTMCDQNPEPQ-V--LTISDADIPPNTYPYKV  479 (546)
T ss_dssp             CCBSCC--CEEECSSSCCCE-E--EEBCCSSCTTTTCCCCC
T ss_pred             CCccCc--eEEEecCCCCCe-E--EEEEeCCCCCCCccEEE
Confidence            999854  688999999998 3  99999997653   565

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=3.6e-68  Score=563.43  Aligned_cols=412  Identities=27%  Similarity=0.372  Sum_probs=353.5

Q ss_pred             EEEEeCCCCCCe---EEEEEEccCCC-CCCCCEEEEecCCC-CCcccEEEeCCccEEEeCccCCccCCceeeEEEEecCC
Q psy8629          21 DLEISEGVPVGT---RVGFIGDGFVG-DSGPPYLIVPVPGS-AVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSG   95 (483)
Q Consensus        21 ~~~v~En~~~gt---~V~~v~a~d~d-~~~~~y~i~~~~~~-~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d~   95 (483)
                      .++|+||.+ |+   .|+++.+ |.+ +..++|+|...... .+.++|.|++.||+|++.++||||+.+.|.|.+.|.|+
T Consensus         6 ~~~v~En~~-g~~~~~i~~~~~-D~~~n~~i~Ysi~~~~~~~~~~~~F~id~~tG~l~~~~~LDrE~~~~y~l~v~a~D~   83 (559)
T 3q2w_A            6 PINLPENSR-GPFPQELVRIRS-DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDI   83 (559)
T ss_dssp             CEEEESSCC-CCSSEEEEECCC-GGGGTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred             cEEeeCCCC-CCCCeEEEEEee-CCCCCcEEEEEEECCCCCCCCCceEEEeCCceEEEECCccCCCCCceEEEEEEEEEC
Confidence            578999997 64   4455543 333 55789999854221 12368999999999999999999999999999999887


Q ss_pred             cceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEE
Q psy8629          96 ENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAA  175 (483)
Q Consensus        96 ~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a  175 (483)
                      +....                               ..++.|.|+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.|
T Consensus        84 g~~~~-------------------------------~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~v~~v~A  132 (559)
T 3q2w_A           84 NGNQV-------------------------------ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTA  132 (559)
T ss_dssp             TSCEE-------------------------------EEEEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCE
T ss_pred             CCCcc-------------------------------ceeEEEEEEEEeCCCCCCccCCCeeEEEEeCCCCCCcEEEEEEE
Confidence            53211                               01578999999999999999999999999999999999999999


Q ss_pred             EeCCCC--CCceEEEEEEeCCCC----CceEEecccCCCceEEEEEEecc-CCCCCCCCEEEEEEEEEECCC---CCeee
Q psy8629         176 KDRDLG--IYNTQRYNIVSGNTN----NAFRLSSHREKDGVLYLDLQING-VLDRETIPEYSLVIEALDGGS---PPLRG  245 (483)
Q Consensus       176 ~D~D~~--~~~~~~y~l~~~~~~----~~F~i~~~~~~~g~~~~~l~~~~-~LD~E~~~~~~l~v~a~D~g~---p~~~~  245 (483)
                      +|+|.|  .|+.++|+|.++.+.    +.|.|++.   +|.    |.+.+ .||||+...|.|.|+|+|+++   +++++
T Consensus       133 ~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~---tG~----i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~  205 (559)
T 3q2w_A          133 IDADDPNALNGMLRYRILSQAPSTPSPNMFTINNE---TGD----IITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSN  205 (559)
T ss_dssp             ECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTT---TCE----EEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEE
T ss_pred             EcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCC---ceE----EEEEeccCCcccCCEEEEEEEEEECCCCCCCCccc
Confidence            999987  689999999876543    68999984   566    56666 999999999999999999765   45899


Q ss_pred             EEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCC--ccEEEEEEEecCCCCCcceEE----eCCc
Q psy8629         246 SMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGS--NGEVEYSINRRQSDKDGLFNI----DSKS  319 (483)
Q Consensus       246 ~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~--~~~i~y~i~~~~~~~~~~F~I----d~~t  319 (483)
                      +++|+|+|.|+|||+|.|....|.+.|+|+. +|+.|+++.|+|+|.+.  ++.++|+|..  ++..+.|.|    ++.+
T Consensus       206 t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~--g~~~~~F~I~~~~~~~~  282 (559)
T 3q2w_A          206 TATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISG--GDPTGRFAILTDPNSND  282 (559)
T ss_dssp             EEEEEEEEECCSCSCCEESSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEE--SCTTCCEEEEECTTTCE
T ss_pred             eEEEEEEEEeCCCCCCccccccceeEecCCC-CCcEEEEEEEEcCCCCCCCceeEEEEEec--CCCCCceEEEecCCCCc
Confidence            9999999999999999999999999999997 89999999999999976  5689999964  567899999    5789


Q ss_pred             cEEEEcccCCCcccceeeeEeEEE--------------------EEee---------------eeeccCCCCeEEEEEEE
Q psy8629         320 GLIFVNKALDFETKEVHDLVPRFA--------------------VEIS---------------SFDEIAEPGTSVFQISA  364 (483)
Q Consensus       320 G~l~~~~~LD~E~~~~~~l~v~~~--------------------~~v~---------------~v~E~~~~gt~v~~v~a  364 (483)
                      |.|++.++||||....|.|+|...                    +.|.               .+.|+.++|+.|+++.|
T Consensus       283 G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND~P~f~~~~~~~~v~En~~~g~~v~~v~A  362 (559)
T 3q2w_A          283 GLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQEEGLHAGTMLTTLTA  362 (559)
T ss_dssp             EEEEECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCCCCEESSSEEEEEEESCCCTTCEEEECCE
T ss_pred             EEEEeCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCCCCCcccccceEEEEeCCCCCCCEEEEEEE
Confidence            999999999999999999988721                    2221               57899999999999999


Q ss_pred             EeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCC----CeeEEEEEEEECCcCCceEEEEEEEEEEec
Q psy8629         365 FDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD----PVPKLTVIATDNGVPALSSSATVLVTIHDV  440 (483)
Q Consensus       365 ~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~----~~y~l~V~a~D~g~p~~s~~~~v~I~V~dv  440 (483)
                      +|+|.|.|+.++|+|..   +..++|.|++.+|.|++.+.||||..    ..|.|+|+|+|+|.|+++++++|.|.|+|+
T Consensus       363 ~D~D~g~n~~i~Ysi~~---~~~~~f~Id~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D~g~p~~ss~~~v~I~V~Dv  439 (559)
T 3q2w_A          363 QDPDRYMQQNIRYTKLS---DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDI  439 (559)
T ss_dssp             ECSCSSSCCCEEEEEEE---CTTCCEEECTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEECSSSCCEEEEEEEEEEECC
T ss_pred             ECCCCCCCCceEEEEcc---CCccceEecCCceEEEEccccCcccccccCCEEEEEEEEEcCCCCcceEEEEEEEEEEEc
Confidence            99999999999999984   35689999999999999999999986    899999999999999999999999999999


Q ss_pred             CCCCCeecCCceEEEEcCCCCCCcEEEEEEEEeCCCCC---CCcC
Q psy8629         441 NDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNIS---EHSF  482 (483)
Q Consensus       441 Nd~~P~f~~~~~~~~V~E~~~~g~~v~~v~a~D~D~~~---~~~~  482 (483)
                      |||+|.|....+  .|+|+  .|..+++|+|+|+|.+.   .++|
T Consensus       440 NDn~P~f~~~~~--~v~e~--~~~~v~~v~A~D~D~~~n~~~~~y  480 (559)
T 3q2w_A          440 NDNAPQVLPQEA--ETCET--PEPNSINITALDYDIDPNAGPFAF  480 (559)
T ss_dssp             SCCCCEESCTTC--CCCSC--CCTTCEEECEECSCCTTSSSSCEE
T ss_pred             cCCCCcccCCce--EEeec--CCCcEEEEEEEcCCCCCCCCCEEE
Confidence            999999987654  57898  44557899999999733   3555

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=7.7e-61  Score=507.25  Aligned_cols=399  Identities=23%  Similarity=0.271  Sum_probs=331.1

Q ss_pred             HhhhcCceEEEEEeCCCCCCeEEEEEEccCCC-----CCCCCEEEEecCCCCC-cccEEEeCCccEEEeCc-cCCccCCc
Q psy8629          12 AVAADEHLRDLEISEGVPVGTRVGFIGDGFVG-----DSGPPYLIVPVPGSAV-DTDLSIEQNTGEIRTKV-PLDRETRS   84 (483)
Q Consensus        12 ~~~~~~~~~~~~v~En~~~gt~V~~v~a~d~d-----~~~~~y~i~~~~~~~~-~~~F~Id~~tG~i~~~~-~LD~E~~~   84 (483)
                      ++.|.+..|.++|+||+++|+.|++++|+|.|     +..++|+|.+...... ...|.|++.||+|++.+ +||||...
T Consensus       105 ~P~F~~~~y~~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~  184 (559)
T 3q2w_A          105 RPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQ  184 (559)
T ss_dssp             CCEESCSEEEEEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCC
T ss_pred             CCccCCCeeEEEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCC
Confidence            46799999999999999999999999999977     2358999986433211 25899999999999987 99999999


Q ss_pred             eeeEEEEecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCC
Q psy8629          85 SYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENT  164 (483)
Q Consensus        85 ~y~l~v~a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~  164 (483)
                      .|.|.|+|.|++..                      +.+      ....+++|.|+|.|+|||+|.|....|.+.|+|+.
T Consensus       185 ~y~l~V~A~D~~g~----------------------p~~------~~s~t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~  236 (559)
T 3q2w_A          185 QYTLIIQATDMEGN----------------------PTY------GLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR  236 (559)
T ss_dssp             EEEEEEEEEHHHHC----------------------TTT------CCEEEEEEEEEEECCSCSCCEESSSEEEEEEESSC
T ss_pred             EEEEEEEEEECCCC----------------------CCC------CccceEEEEEEEEeCCCCCCccccccceeEecCCC
Confidence            99999999986420                      000      01126789999999999999999999999999997


Q ss_pred             CCCeEEEEEEEEeCCCCC--CceEEEEEEeCCCCCceEEeccc-CCCceEEEEEEeccCCCCCCCCEEEEEEEEEECC--
Q psy8629         165 PRDVKRTLNAAKDRDLGI--YNTQRYNIVSGNTNNAFRLSSHR-EKDGVLYLDLQINGVLDRETIPEYSLVIEALDGG--  239 (483)
Q Consensus       165 ~~gt~v~~v~a~D~D~~~--~~~~~y~l~~~~~~~~F~i~~~~-~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g--  239 (483)
                       +|+.++++.|+|+|.+.  |+.++|+|.+++..+.|.|.... ..+|.    |.+.++||||....|.|+|.|+|++  
T Consensus       237 -~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~----i~~~~~LD~E~~~~y~l~V~A~D~~~~  311 (559)
T 3q2w_A          237 -VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGL----VTVVKPIDFETNRMFVLTVAAENQVPL  311 (559)
T ss_dssp             -SSEEEEEEEEECCSCTTSTTTSBCCEEEESCTTCCEEEEECTTTCEEE----EEECSCCCTTTCSEEEEEEECCBSSCC
T ss_pred             -CCcEEEEEEEEcCCCCCCCceeEEEEEecCCCCCceEEEecCCCCcEE----EEeCCCCCCccCceEEEEEEEEcCCcc
Confidence             89999999999999986  56899999998888999995321 14566    7889999999999999999999964  


Q ss_pred             ----CCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEE
Q psy8629         240 ----SPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNI  315 (483)
Q Consensus       240 ----~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~I  315 (483)
                          .|+++++++|+|+|.|+|| +|.|....|.+.|+|+.+.|+.|+++.|+|+|.|.++.++|+|..   +..++|.|
T Consensus       312 ~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~g~n~~i~Ysi~~---~~~~~f~I  387 (559)
T 3q2w_A          312 AKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLS---DPANWLKI  387 (559)
T ss_dssp             CTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEEEEESCCCTTCEEEECCEECSCSSSCCCEEEEEEE---CTTCCEEE
T ss_pred             ccCCCCCCceEEEEEEEEEeCCC-CCcccccceEEEEeCCCCCCCEEEEEEEECCCCCCCCceEEEEcc---CCccceEe
Confidence                3678999999999999999 699999999999999999999999999999999999999999964   45789999


Q ss_pred             eCCccEEEEcccCCCccc----ceeeeEeE--------------EEEEee--------------eeeccCCCCeEEEEEE
Q psy8629         316 DSKSGLIFVNKALDFETK----EVHDLVPR--------------FAVEIS--------------SFDEIAEPGTSVFQIS  363 (483)
Q Consensus       316 d~~tG~l~~~~~LD~E~~----~~~~l~v~--------------~~~~v~--------------~v~E~~~~gt~v~~v~  363 (483)
                      ++.+|.|++.++||||..    ..|.|+|.              +.+.|.              .+.|+  ++..+++|.
T Consensus       388 d~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D~g~p~~ss~~~v~I~V~DvNDn~P~f~~~~~~v~e~--~~~~v~~v~  465 (559)
T 3q2w_A          388 DPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCET--PEPNSINIT  465 (559)
T ss_dssp             CTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEECSSSCCEEEEEEEEEEECCSCCCCEESCTTCCCCSC--CCTTCEEEC
T ss_pred             cCCceEEEEccccCcccccccCCEEEEEEEEEcCCCCcceEEEEEEEEEEEccCCCCcccCCceEEeec--CCCcEEEEE
Confidence            999999999999999986    89999887              222222              45566  455578999


Q ss_pred             EEeCCCCCCc-eEEEEEeeCCCCCCCcEEEeCCCcEEEEc-ccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEecC
Q psy8629         364 AFDQDEGINS-VITYSLRENTDDHPSWFQIDSKSGLITMK-SNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVN  441 (483)
Q Consensus       364 a~D~D~~~~~-~v~y~l~~~~~~~~~~F~id~~tG~i~~~-~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvN  441 (483)
                      |+|+|.+.|+ .++|+|....++..+.|.|++.+|.+... ..++++....|.|.|+|+|+|.|+++++++|+|.|+|||
T Consensus       466 A~D~D~~~n~~~~~ysl~~~~~~~~~~f~i~~~~G~~~~~~~~~~~~~~~~~~l~V~~~D~g~P~lsst~tv~V~V~d~n  545 (559)
T 3q2w_A          466 ALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCD  545 (559)
T ss_dssp             EECSCCTTSSSSCEEECCSSSHHHHHHEEEEECSSSCEEEEECSCC-CCEEEEEEEEEECSSSSCCEEEEEEEEEEC---
T ss_pred             EEcCCCCCCCCCEEEEEcCCCCccCCCeEEEecCCCEEEEEeccCcccCcEEEEEEEEEECCCCccceeEEEEEEEEeCC
Confidence            9999998887 79999984333346789999999987655 478999999999999999999999999999999999999


Q ss_pred             CCCCeecC
Q psy8629         442 DNEPIFDQ  449 (483)
Q Consensus       442 d~~P~f~~  449 (483)
                      |+++....
T Consensus       546 ~~~~~~~~  553 (559)
T 3q2w_A          546 SNGDCTDV  553 (559)
T ss_dssp             --------
T ss_pred             CCCccccc
Confidence            98766543

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=4.3e-59  Score=492.93  Aligned_cols=390  Identities=22%  Similarity=0.256  Sum_probs=326.1

Q ss_pred             HhhhcCceEEEEEeCCCCCCeEEEEEEccCCCC------CCCCEEEEecCCC-CCcccEEEeCCccEEEe-CccCCccCC
Q psy8629          12 AVAADEHLRDLEISEGVPVGTRVGFIGDGFVGD------SGPPYLIVPVPGS-AVDTDLSIEQNTGEIRT-KVPLDRETR   83 (483)
Q Consensus        12 ~~~~~~~~~~~~v~En~~~gt~V~~v~a~d~d~------~~~~y~i~~~~~~-~~~~~F~Id~~tG~i~~-~~~LD~E~~   83 (483)
                      ++.|.+..|.++|+||+++|+.|++++|+|.|.      ..++|+|.+.... ....+|.|++.+|.|++ .++||||..
T Consensus       105 ~P~F~~~~y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~  184 (550)
T 3q2v_A          105 RPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY  184 (550)
T ss_dssp             CCCBSCSEEEEEEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTC
T ss_pred             CCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccC
Confidence            467999999999999999999999999999773      3589999865322 13458999999999998 579999999


Q ss_pred             ceeeEEEEecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCC
Q psy8629          84 SSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPEN  163 (483)
Q Consensus        84 ~~y~l~v~a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~  163 (483)
                      ..|.|+++|.|++.                               +....++.|.|+|.|+|||+|.|....|.+.|+|+
T Consensus       185 ~~y~l~V~A~D~g~-------------------------------~~~s~t~~v~I~V~DvNDn~P~F~~~~y~~~V~En  233 (550)
T 3q2v_A          185 PTYTLVVQAADLQG-------------------------------EGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN  233 (550)
T ss_dssp             SEEEEEEEEESGGG-------------------------------TSCCCEEEEEEEEECCSCSCCEESSSEEEEEEESS
T ss_pred             cEEEEEEEEEcCCC-------------------------------CCeeEEEEEEEEecccCCCCCEEecceeEEEEecC
Confidence            99999999998642                               11234789999999999999999999999999999


Q ss_pred             CCCCeEEEEEEEEeCCCCCCce--EEEEEEeCCCCCceEEeccc-CCCceEEEEEEeccCCCCCCCCEEEEEEEEEECC-
Q psy8629         164 TPRDVKRTLNAAKDRDLGIYNT--QRYNIVSGNTNNAFRLSSHR-EKDGVLYLDLQINGVLDRETIPEYSLVIEALDGG-  239 (483)
Q Consensus       164 ~~~gt~v~~v~a~D~D~~~~~~--~~y~l~~~~~~~~F~i~~~~-~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g-  239 (483)
                       ++|+.++++.|+|+|.+.++.  ++|+|.+ +..+.|.|+... ..+|.    |.+.++||||....|.|+|+|+|++ 
T Consensus       234 -~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~-~~~~~F~i~~d~~~~tG~----i~~~~~LD~E~~~~y~l~V~a~D~~~  307 (550)
T 3q2v_A          234 -EVNARIATLKVTDDDAPNTPAWKAVYTVVN-DPDQQFVVVTDPTTNDGI----LKTAKGLDFEAKQQYILHVRVENEEP  307 (550)
T ss_dssp             -CSSCCCEEECEECCSCTTSTTTCEEEEESS-CSSCCEEEEECTTTCCEE----EEESSCCCTTTCSEEEEEEEEEESSC
T ss_pred             -CCCCEEEEEEEEECCCCCCCcEEEEEEEEe-CCCCcEEEEecCCCccEE----EEecccCCccccceEEEEEEEEeCCC
Confidence             999999999999999998774  6699987 667899998432 14676    7889999999999999999999987 


Q ss_pred             --CCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeC
Q psy8629         240 --SPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDS  317 (483)
Q Consensus       240 --~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~  317 (483)
                        .|.++++++|+|+|+|+|| +|.|....|.+.|+|+++.|+.|+++.|+|+|.|.++.++|+|..   +..++|.|++
T Consensus       308 ~~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~i~y~i~~---~~~~~f~id~  383 (550)
T 3q2v_A          308 FEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWR---DTANWLEINP  383 (550)
T ss_dssp             CCSSCCCEEEEEEEEEECCCC-CCEESSSSCEEEEETTCCSSCEEEECCEECCCCSTTCCCEEEEEE---CTTCCEEECT
T ss_pred             CCCCccceEEEEEEEEEecCC-CCeEcCcceEEEEecCCCCCCEEEEEeCCCCCCCCCCCEEEEEec---CCCCcEEEeC
Confidence              3568999999999999999 999999999999999999999999999999999999999999954   5678999999


Q ss_pred             CccEEEEcccCCCccc-----ceeeeEeE--------------EEEEee--------------eeeccCCCCeEEEEEEE
Q psy8629         318 KSGLIFVNKALDFETK-----EVHDLVPR--------------FAVEIS--------------SFDEIAEPGTSVFQISA  364 (483)
Q Consensus       318 ~tG~l~~~~~LD~E~~-----~~~~l~v~--------------~~~~v~--------------~v~E~~~~gt~v~~v~a  364 (483)
                      .+|.|++.++||||..     ..|.|+|.              +.+.|.              .+.|+.+.|..   |.|
T Consensus       384 ~tG~i~~~~~lDrE~~~~~~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P~~~~~~~~v~e~~~~~~~---v~A  460 (550)
T 3q2v_A          384 ETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHI---ITI  460 (550)
T ss_dssp             TTCEEEECSCCCTTCTTTCCSSEEEEEEEEECCSSSCCCEEEEEEEEEECCCCCCCEESCSSCEEESSSCCCEE---EEE
T ss_pred             CCcEEEECCccCcccccccCCCEEEEEEEEEeCCCCcceeEEEEEEEEEeCCCCCCcCcCcccceeecCCCcEE---EEE
Confidence            9999999999999998     89999987              222222              57788887765   999


Q ss_pred             EeCCCCCCc-eEEEEEeeCCCCCCCcEEEe--CCCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEecC
Q psy8629         365 FDQDEGINS-VITYSLRENTDDHPSWFQID--SKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVN  441 (483)
Q Consensus       365 ~D~D~~~~~-~v~y~l~~~~~~~~~~F~id--~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvN  441 (483)
                      +|+|.+.|+ .++|+|..+.   ...|.+.  ..+|.+...+.+++|....|.|+|+|+|+|.  ++++++|+|.|+|+|
T Consensus       461 ~D~D~~~n~~~~~~~l~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~l~V~a~D~g~--lss~~tv~V~V~d~n  535 (550)
T 3q2v_A          461 LDPDLPPNTSPFTAELTHGA---SVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQN--KDQVTTLDVHVCDCE  535 (550)
T ss_dssp             ECCSCTTSSSSCCCEEEECC---SSSCEEECCSTTSSEEEEECSCC----CEECEEECCSSSC--CCCBCCCEEEEECCC
T ss_pred             ECCCCCCCCCCEEEEECCCC---CCCeEEEEecCCCcEEEEEecccCCCceEEEEEEEEECCc--ceeEEEEEEEEEEec
Confidence            999999888 5889998542   2344444  4458888888999999999999999999987  899999999999999


Q ss_pred             CCCCeecCC
Q psy8629         442 DNEPIFDQS  450 (483)
Q Consensus       442 d~~P~f~~~  450 (483)
                      ||+|.+...
T Consensus       536 dn~~~~~~~  544 (550)
T 3q2v_A          536 GTVNNCMKA  544 (550)
T ss_dssp             C--------
T ss_pred             CCCcchhhh
Confidence            999987543

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=7.7e-58  Score=468.01  Aligned_cols=357  Identities=25%  Similarity=0.350  Sum_probs=307.5

Q ss_pred             CeEEEEEEccCCC---CCCCCEEEEecCCCCCcccEEEeC--------CccEEEeCccCCccCC---ceeeEEEEecCCc
Q psy8629          31 GTRVGFIGDGFVG---DSGPPYLIVPVPGSAVDTDLSIEQ--------NTGEIRTKVPLDRETR---SSYSLVAIPLSGE   96 (483)
Q Consensus        31 gt~V~~v~a~d~d---~~~~~y~i~~~~~~~~~~~F~Id~--------~tG~i~~~~~LD~E~~---~~y~l~v~a~d~~   96 (483)
                      ...|.+|+|+|+|   +..+.|+|...   +....|.|++        .+|.|+++++||||..   ..|.+.+.|.|++
T Consensus         8 ~~Pv~~v~AtD~D~g~n~~v~Ysi~~~---~~~~~F~I~~~~~~f~v~~tG~i~~~~~LD~E~~~~~~~~~~~V~a~d~g   84 (419)
T 3ubh_A            8 VRPTKRIEFTEADGDTEGKSVFQLEKE---TDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG   84 (419)
T ss_dssp             EEEEEEEEEEGGGGCSTTCEEEECCCS---STTCEEEESSCCSSEEECTTSEEEESSCCCGGGSCTTCEEEEEEEEEC--
T ss_pred             ccceEEEEEEcccCCCCceEEEEEecC---CCCceEEEcCCCccEEECCCcEEEECCccCccccCccceEEEEEEEEeCC
Confidence            4568999999977   55689999754   2345899987        8999999999999998   5788877777643


Q ss_pred             ceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCc--eEEEEeCCCCCCeEEEEEE
Q psy8629          97 NVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPF--MSIEFPENTPRDVKRTLNA  174 (483)
Q Consensus        97 ~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~--~~~~V~E~~~~gt~v~~v~  174 (483)
                      ...       |                     ......+.|.|+|.|+|||+|.|....  |.+.|+|++++|+.|+++.
T Consensus        85 ~~~-------~---------------------~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~  136 (419)
T 3ubh_A           85 HNA-------G---------------------IKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQ  136 (419)
T ss_dssp             CCS-------S---------------------SCCEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECC
T ss_pred             CCC-------C---------------------CCCcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEE
Confidence            100       0                     000015789999999999999999877  7899999999999999999


Q ss_pred             EEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECCCC----CeeeEEEEE
Q psy8629         175 AKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSP----PLRGSMIVN  250 (483)
Q Consensus       175 a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~p----~~~~~~~v~  250 (483)
                      |+|+|.|.|  ++|+|..++..+.|.|++.   +|.    |.+.+.||||....|.|+|+|+|+|+|    ++++++.++
T Consensus       137 A~D~D~g~n--~~y~i~~~~~~~~F~I~~~---tG~----i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~  207 (419)
T 3ubh_A          137 ARDPDTDHN--IHYFIVRDRTGGRFEVDER---SGV----VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEER  207 (419)
T ss_dssp             EECSSTTCC--EEEEEEEESSSSCEEECTT---TCE----EEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEE
T ss_pred             EECCCCCce--eEEEEEeCCCCCeEEEeCC---ceE----EEEecccccccccEEEEEEEEEECCCCccCcccccceEEE
Confidence            999999876  8999998877789999984   566    778899999999999999999998764    578889999


Q ss_pred             EEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCC
Q psy8629         251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDF  330 (483)
Q Consensus       251 I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~  330 (483)
                      |.|.| |||+|.|.+..|.+.|+||.+.|+.|+++.|+|+|   ++.++|+|.. .++..++|.|++.+|.|++.++|||
T Consensus       208 I~V~d-ndn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~d---n~~i~Ysi~~-~~~~~~~F~I~~~tG~i~~~~~LD~  282 (419)
T 3ubh_A          208 LSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKA-QGQGAGTFNIGPTSGIVKLAKELDF  282 (419)
T ss_dssp             EEEEE-SCCCCEESSSCEEEEEETTCCTTCEEEECCEECSS---CCCCEEEEEE-SSSCCSSEEECTTTCEEEECSCCCT
T ss_pred             EEEEC-CCCCCceecCeeEEEecCCCCCCcEEEEEEEecCC---CCceEEEEec-CCCCCCcEEEECCCCEEEECcccCc
Confidence            99999 99999999999999999999999999999999998   6789999974 4566789999999999999999999


Q ss_pred             cccc---eeeeEeEEE-------------EEee-----------------eeeccCCCCeEEEEEEEEeCCCCCCceEEE
Q psy8629         331 ETKE---VHDLVPRFA-------------VEIS-----------------SFDEIAEPGTSVFQISAFDQDEGINSVITY  377 (483)
Q Consensus       331 E~~~---~~~l~v~~~-------------~~v~-----------------~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y  377 (483)
                      |...   .|.|+|...             +.|.                 .+.|++++|+.|+++.|+|+|.|.|+.++|
T Consensus       283 E~~~~~~~y~l~V~a~dd~~~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y  362 (419)
T 3ubh_A          283 EDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEY  362 (419)
T ss_dssp             TCTTSCSEEEEEEEEECTTTSCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETTCCTTCEEEECCEECSSCGGGGCEEE
T ss_pred             cccccccEEEEEEEEEeCCCCcEEEEEEEEEEEccCCCCCcccCCcceeEEecCCCCCCCEEEEEEEEeCCCCCCCEEEE
Confidence            9876   688888721             1111                 478999999999999999999999999999


Q ss_pred             EEeeCCCCCCCcEEEeCCCcEEEEcccCCCCC-CCeeEEEEEEEECCcCCceEEEEEEEEEEe
Q psy8629         378 SLRENTDDHPSWFQIDSKSGLITMKSNVDCET-DPVPKLTVIATDNGVPALSSSATVLVTIHD  439 (483)
Q Consensus       378 ~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~-~~~y~l~V~a~D~g~p~~s~~~~v~I~V~d  439 (483)
                      +|..      ++|.|++ +|.|++.+.||||. ...|.|+|+|+|+|.|+++++++|.|.|.|
T Consensus       363 ~i~~------~~F~Id~-~G~i~~~~~ld~E~~~~~y~l~V~a~D~G~p~~sst~~v~I~v~n  418 (419)
T 3ubh_A          363 LVSD------DHFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN  418 (419)
T ss_dssp             EESC------TTEEECT-TCEEEECSCSSSSCTTCEEEEEEEEEECCSSCCEEEEEEEEEEEC
T ss_pred             EEcC------CcEEECC-CeEEEECcccCcccCCceEEEEEEEEECCcCCceeEEEEEEEEec
Confidence            9962      4799998 89999999999998 689999999999999999999999999986

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=1.6e-59  Score=495.56  Aligned_cols=386  Identities=22%  Similarity=0.241  Sum_probs=330.0

Q ss_pred             HhhhcCceEEEEEeCCCCCCeEEEEEEccCCCC------CCCCEEEEecCCC-CCcccEEEeCCccEEEeC-ccCCccCC
Q psy8629          12 AVAADEHLRDLEISEGVPVGTRVGFIGDGFVGD------SGPPYLIVPVPGS-AVDTDLSIEQNTGEIRTK-VPLDRETR   83 (483)
Q Consensus        12 ~~~~~~~~~~~~v~En~~~gt~V~~v~a~d~d~------~~~~y~i~~~~~~-~~~~~F~Id~~tG~i~~~-~~LD~E~~   83 (483)
                      ++.|.+..|.++|+||+++|+.|++++|+|.|.      ..++|+|...... .....|.|++.||.|++. ++||||..
T Consensus       111 ~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~  190 (546)
T 1l3w_A          111 RPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKF  190 (546)
T ss_dssp             CCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTC
T ss_pred             cCEecCceeEEEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccC
Confidence            467999999999999999999999999999763      4689999865321 134589999999999985 79999999


Q ss_pred             ceeeEEEEecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCC
Q psy8629          84 SSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPEN  163 (483)
Q Consensus        84 ~~y~l~v~a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~  163 (483)
                      ..|.|.|.|.|++..                               ....++.|.|+|.|+|||+|.|....|.+.|+|+
T Consensus       191 ~~y~l~V~A~D~g~~-------------------------------~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En  239 (546)
T 1l3w_A          191 PEYTLTVQATDLEGA-------------------------------GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN  239 (546)
T ss_dssp             CEEEEEEEEEHHHHT-------------------------------SCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS
T ss_pred             ceEEEEEEEEECCCC-------------------------------CcceEEEEEEEEeecCCCCCccccccceEEEEeC
Confidence            999999999886521                               0112678999999999999999999999999999


Q ss_pred             CCCCeEEEEEEEEeCC--CCCCceEEEEEEeCCCCCceEEecccC-CCceEEEEEEeccCCCCCCCCEEEEEEEEEECC-
Q psy8629         164 TPRDVKRTLNAAKDRD--LGIYNTQRYNIVSGNTNNAFRLSSHRE-KDGVLYLDLQINGVLDRETIPEYSLVIEALDGG-  239 (483)
Q Consensus       164 ~~~gt~v~~v~a~D~D--~~~~~~~~y~l~~~~~~~~F~i~~~~~-~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g-  239 (483)
                       ++|+.|+++.|+|+|  .+.|+.++|+|.+ +..+.|.|+.... .+|.    |.+.++||||....|.|+|+|+|++ 
T Consensus       240 -~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~-~~~~~F~I~~d~~~~~G~----i~~~~~LD~E~~~~y~l~V~a~D~~~  313 (546)
T 1l3w_A          240 -EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV-NEGGFFNITTDPESNQGI----LTTAKGLDFELRKQYVLQITVENAEP  313 (546)
T ss_dssp             -SCCCEEEEECBCCCSCTTSTTSCEECCBSC-CTTSCEEEEECTTTCCEE----EEESSCCCCSSCCCEEEEECCEESSC
T ss_pred             -CCCCEEEEEEEEeCCCCCCCCcEEEEEEEe-CCCceEEEEecCCCCeEE----EEECccCCcccccEEEEEEEEEECCC
Confidence             999999999999999  7789999999987 6678999974321 4577    7889999999999999999999986 


Q ss_pred             --CCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeC
Q psy8629         240 --SPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDS  317 (483)
Q Consensus       240 --~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~  317 (483)
                        .|+++++++|+|+|.|+|| +|.|....|.+.|+|+.+.|+.|+++.|+|+|.|.++.++|+|..   +..++|.|++
T Consensus       314 ~~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D~g~n~~i~ysi~~---~~~~~F~Id~  389 (546)
T 1l3w_A          314 FSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN---DPARWLTVNK  389 (546)
T ss_dssp             CSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC---CSSCCCEEET
T ss_pred             CCCCCcceeEEEEEEEEcCCC-CCcEecceEEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEECC---CCCCcEEEeC
Confidence              3568999999999999999 999999999999999999999999999999999999999999953   4578999999


Q ss_pred             CccEEEEcccCCCccc----ceeeeEeEEE------------EEee----------------eeeccCCCCeEEEEEEEE
Q psy8629         318 KSGLIFVNKALDFETK----EVHDLVPRFA------------VEIS----------------SFDEIAEPGTSVFQISAF  365 (483)
Q Consensus       318 ~tG~l~~~~~LD~E~~----~~~~l~v~~~------------~~v~----------------~v~E~~~~gt~v~~v~a~  365 (483)
                      .+|.|++.++||||..    ..|.|+|...            +.|.                .+.|+.++|+ +  +.|+
T Consensus       390 ~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~DvNDn~P~f~~~~~~v~e~~~~g~-v--v~A~  466 (546)
T 1l3w_A          390 DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-V--LTIS  466 (546)
T ss_dssp             TTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCCCCCSCCCBSCCCEEECSSSCCCE-E--EEBC
T ss_pred             CcEEEEECCccCCccccCCCCEEEEEEEEEECCCCCcEeEEEEEEEEEECCCCcCCccCceEEEecCCCCCe-E--EEEE
Confidence            9999999999999998    8999988822            1221                5779999998 3  9999


Q ss_pred             eCCCCCCce-EEEEEeeCCCCCCCcEEE--eCCCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEecCC
Q psy8629         366 DQDEGINSV-ITYSLRENTDDHPSWFQI--DSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVND  442 (483)
Q Consensus       366 D~D~~~~~~-v~y~l~~~~~~~~~~F~i--d~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd  442 (483)
                      |+|.+.|+. ++|+|..   ...+.|.|  +..++.+.+ +.+|||....|.|+|+|+|+|.  ++++++|+|.|+|+||
T Consensus       467 D~D~~~n~~~~~y~l~~---~~~~~f~i~~~g~~~~~~~-~~~d~e~~~~y~l~V~a~D~g~--~s~~~~v~I~V~d~ND  540 (546)
T 1l3w_A          467 DADIPPNTYPYKVSLSH---GSDLTWKAELDSKGTSMLL-SPTQQLKKGDYSIYVLLSDAQN--NPQLTVVNATVCSCEG  540 (546)
T ss_dssp             CSSCTTTTCCCCCBCCS---CSSSSCBCCBCTTSSEEEE-BCSSCCCSSCBCCEEECCSSSC--CCEEEECCEEECSCSS
T ss_pred             eCCCCCCCccEEEEECC---CCCCCEEEeccCCceEEEe-cccccccCceEEEEEEEEECCc--CceEEEEEEEEEeccC
Confidence            999999886 8999973   23457887  333334443 4568999999999999999987  8999999999999999


Q ss_pred             CCCee
Q psy8629         443 NEPIF  447 (483)
Q Consensus       443 ~~P~f  447 (483)
                      |++.+
T Consensus       541 n~~~C  545 (546)
T 1l3w_A          541 KAIKC  545 (546)
T ss_dssp             SCCCC
T ss_pred             CCCCc
Confidence            97754

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=1.9e-57  Score=501.66  Aligned_cols=389  Identities=21%  Similarity=0.237  Sum_probs=333.0

Q ss_pred             HhhhcCceEEEEEeCCCCCCeEEEEEEccCCCC------CCCCEEEEecCCC-CCcccEEEeCCccEEEeC-ccCCccCC
Q psy8629          12 AVAADEHLRDLEISEGVPVGTRVGFIGDGFVGD------SGPPYLIVPVPGS-AVDTDLSIEQNTGEIRTK-VPLDRETR   83 (483)
Q Consensus        12 ~~~~~~~~~~~~v~En~~~gt~V~~v~a~d~d~------~~~~y~i~~~~~~-~~~~~F~Id~~tG~i~~~-~~LD~E~~   83 (483)
                      ++.|.+..|.++|+||+++|+.|++++|+|.|.      ..++|+|.+.... .....|.|++.||.|++. ++||||..
T Consensus       260 ~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDrE~~  339 (880)
T 1q55_A          260 RPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKF  339 (880)
T ss_dssp             CCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTC
T ss_pred             CCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCHHHc
Confidence            467999999999999999999999999999763      3589999865321 134589999999999996 68999999


Q ss_pred             ceeeEEEEecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCC
Q psy8629          84 SSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPEN  163 (483)
Q Consensus        84 ~~y~l~v~a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~  163 (483)
                      ..|.|.|+|.|++..                               ....+++|.|+|.|+|||+|.|....|.+.|+|+
T Consensus       340 ~~y~l~V~A~D~g~~-------------------------------~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En  388 (880)
T 1q55_A          340 PEYTLTVQATDLEGA-------------------------------GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN  388 (880)
T ss_dssp             CEEEEEEEEEHHHHT-------------------------------SCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS
T ss_pred             ceeEEEEEEEECCCC-------------------------------CccceeEEEEEEEeccCCCCCccccceEEEeecC
Confidence            999999999886521                               0112678999999999999999999999999999


Q ss_pred             CCCCeEEEEEEEEeCC--CCCCceEEEEEEeCCCCCceEEeccc-CCCceEEEEEEeccCCCCCCCCEEEEEEEEEECC-
Q psy8629         164 TPRDVKRTLNAAKDRD--LGIYNTQRYNIVSGNTNNAFRLSSHR-EKDGVLYLDLQINGVLDRETIPEYSLVIEALDGG-  239 (483)
Q Consensus       164 ~~~gt~v~~v~a~D~D--~~~~~~~~y~l~~~~~~~~F~i~~~~-~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g-  239 (483)
                       ++|+.|+++.|+|+|  .+.|+.++|+|.+ +..+.|.|+... ..+|.    |.+.++||||....|.|+|+|+|++ 
T Consensus       389 -~~gt~V~~v~A~D~D~~~g~n~~v~Ysi~~-~~~~~F~I~~d~~~~~G~----i~~~~~LD~E~~~~y~l~V~A~D~~~  462 (880)
T 1q55_A          389 -EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV-NEGGFFNITTDPESNQGI----LTTAKGLDFELRKQYVLQITVENAEP  462 (880)
T ss_dssp             -SCCCEEEEECBCCCSCTTSTTSCEECCBSC-CTTSCEEEEECTTTCCEE----EEESSCCCCSSCCCEEEEECCEESSC
T ss_pred             -CCCcEEEEEEEECCCCCCCCCceEEEEEec-CCCceEEEEecCCCceEE----EecccCCCcccCCcEEEEEEEEECCC
Confidence             999999999999999  6789999999987 667899996422 14576    7889999999999999999999987 


Q ss_pred             --CCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeC
Q psy8629         240 --SPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDS  317 (483)
Q Consensus       240 --~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~  317 (483)
                        .|+++++++|+|+|.|+|| +|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|.++.++|+|..   +..++|.|++
T Consensus       463 ~~~~~~sst~tV~I~V~DvND-~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~---~~~~~F~Id~  538 (880)
T 1q55_A          463 FSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN---DPARWLTVNK  538 (880)
T ss_dssp             CSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC---CSSCCCEEET
T ss_pred             CCCCCcceeEEEEEEEEeCCC-CCEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcEEEEECC---CCCCCEEEeC
Confidence              3568999999999999999 999999999999999999999999999999999999999999953   4578999999


Q ss_pred             CccEEEEcccCCCccc----ceeeeEeEEE------------EEee----------------eeeccCCCCeEEEEEEEE
Q psy8629         318 KSGLIFVNKALDFETK----EVHDLVPRFA------------VEIS----------------SFDEIAEPGTSVFQISAF  365 (483)
Q Consensus       318 ~tG~l~~~~~LD~E~~----~~~~l~v~~~------------~~v~----------------~v~E~~~~gt~v~~v~a~  365 (483)
                      .+|.|++.++||||..    ..|.++|...            +.|.                .+.|+.++|+ +  +.|+
T Consensus       539 ~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D~g~p~~sst~tv~I~V~DvNDn~P~f~~~~~~v~E~~~~g~-v--v~A~  615 (880)
T 1q55_A          539 DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-V--LTIS  615 (880)
T ss_dssp             TTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCCCCCSCCCBSCCCEEECSSSCCCE-E--EEBC
T ss_pred             CccEEEECCccCcccccCCCCEEEEEEEEEECCCCCcEeEEEEEEEEEeCCCCCCCccCcceEEecCCCCCe-E--EEEe
Confidence            9999999999999997    8999988822            2221                5778999997 3  9999


Q ss_pred             eCCCCCCce-EEEEEeeCCCCCCCcEEE--eCCCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEecCC
Q psy8629         366 DQDEGINSV-ITYSLRENTDDHPSWFQI--DSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVND  442 (483)
Q Consensus       366 D~D~~~~~~-v~y~l~~~~~~~~~~F~i--d~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd  442 (483)
                      |+|.+.|+. ++|+|..+   ....|.|  +..++.+.+. .+|+|....|.|+|+|+|+|.  ++++++|+|+|+|+||
T Consensus       616 D~D~~~n~~~~~ysl~~~---~~~~f~i~~~g~~~~l~~~-~~d~~~~~~y~l~V~a~D~g~--lsst~tv~V~V~d~nd  689 (880)
T 1q55_A          616 DADIPPNTYPYKVSLSHG---SDLTWKAELDSKGTSMLLS-PTQQLKKGDYSIYVLLSDAQN--NPQLTVVNATVCSCEG  689 (880)
T ss_dssp             CSSCTTTTCCCCCBCCSC---SSSSCBCCBCTTSSEEEEB-CSSCCCSSCBCCEEECCSSSC--CCEEEECCEEECSCSS
T ss_pred             cCCCCCCCceEEEEECCC---CCCCeEEEcccceeEEEec-cCccccCCEEEEEEEEEECCc--ceeeEEEEEEEEecCC
Confidence            999999886 89999842   3346877  4445566654 558999999999999999988  8999999999999999


Q ss_pred             CCCeecCC
Q psy8629         443 NEPIFDQS  450 (483)
Q Consensus       443 ~~P~f~~~  450 (483)
                      |+|.|...
T Consensus       690 ~~~~~~~~  697 (880)
T 1q55_A          690 KAIKCQEK  697 (880)
T ss_dssp             SCCCCC--
T ss_pred             Cccccccc
Confidence            99988643

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=1e-51  Score=406.94  Aligned_cols=297  Identities=30%  Similarity=0.420  Sum_probs=255.0

Q ss_pred             EEEEEeCC--CCCCeEEEEEEccCCC--CCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCceeeEEEEecCC
Q psy8629          20 RDLEISEG--VPVGTRVGFIGDGFVG--DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSG   95 (483)
Q Consensus        20 ~~~~v~En--~~~gt~V~~v~a~d~d--~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d~   95 (483)
                      +.++|+||  .+.|+.|+++. +|.|  +..++|+|...   +...+|.|++.+|+|++.++||||....|.|.+.|.|+
T Consensus         5 ~~~~v~E~~~~~~~~~v~~va-~D~D~g~~~i~Y~l~~~---~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~   80 (322)
T 2a62_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPGSKKIKYILSGD---GAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDF   80 (322)
T ss_dssp             CCEECCCSCCCSSCEECCCCC-CCCCCSSCCCEEEEEET---TBTTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEECT
T ss_pred             ceeeeccccCCCCCEEEEEEE-EcCCCCCCEEEEEEECC---CCCCcEEEeCCcCEEEEeccCCcccccEEEEEEEEEEC
Confidence            35788999  89999999996 7866  45789999853   23458999999999999999999999999999999986


Q ss_pred             cceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEE
Q psy8629          96 ENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAA  175 (483)
Q Consensus        96 ~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a  175 (483)
                      +...                      ..        ..++.+.|+|.|+|||+|.|....|.+.|+|++++|+.|+++.|
T Consensus        81 ~~~~----------------------~~--------~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A  130 (322)
T 2a62_A           81 ETNK----------------------PL--------EPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTA  130 (322)
T ss_dssp             TTCS----------------------EE--------EEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCCCC
T ss_pred             CCCC----------------------cc--------cceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEE
Confidence            5210                      00        01467899999999999999999999999999999999999999


Q ss_pred             EeCCC---CCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEec-cCCCCCCCCEEEEEEEEEECCCCC--eeeEEEE
Q psy8629         176 KDRDL---GIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQIN-GVLDRETIPEYSLVIEALDGGSPP--LRGSMIV  249 (483)
Q Consensus       176 ~D~D~---~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~-~~LD~E~~~~~~l~v~a~D~g~p~--~~~~~~v  249 (483)
                      +|+|.   |.|+.++|+|.+++  ..|.|++.   +|.    |.+. +.||||....|.|.|+|+|+|.|+  ++++++|
T Consensus       131 ~D~D~~~~G~n~~i~Y~i~~~~--~~F~Id~~---tG~----i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v  201 (322)
T 2a62_A          131 TDADDPVYGNSAKLVYSILEGQ--PYFSIEPE---TAI----IKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTL  201 (322)
T ss_dssp             CBCSCSSSTTSSCEEEEEEECT--TTEEECTT---TCC----EEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEE
T ss_pred             EeCCCCCCCccEEEEEEEccCC--CCEEEecC---CCE----EEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEE
Confidence            99996   78899999999864  58999984   466    6667 899999999999999999999874  8999999


Q ss_pred             EEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCC
Q psy8629         250 NVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALD  329 (483)
Q Consensus       250 ~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD  329 (483)
                      +|+|.|+|||+|.|.+..|.+.|+|+.+.|+.|+++.|+|+|.|.|+.++|+|..  ++..                   
T Consensus       202 ~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~--g~~~-------------------  260 (322)
T 2a62_A          202 TVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIID--GDGT-------------------  260 (322)
T ss_dssp             EEEECCCCCCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC-----CC-------------------
T ss_pred             EEEEEecCCCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEEC--CCCC-------------------
Confidence            9999999999999999999999999999999999999999999888888888842  2223                   


Q ss_pred             CcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEe----CCCcEEEEcccC
Q psy8629         330 FETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQID----SKSGLITMKSNV  405 (483)
Q Consensus       330 ~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id----~~tG~i~~~~~l  405 (483)
                                                                                ++|.|+    +.+|.|++.++|
T Consensus       261 ----------------------------------------------------------~~F~I~~d~~~~tG~i~~~~~L  282 (322)
T 2a62_A          261 ----------------------------------------------------------ALFEITSDAQAQDGVIRLRKPL  282 (322)
T ss_dssp             ----------------------------------------------------------SSBCCBCCTTTSEEEEEBCSCC
T ss_pred             ----------------------------------------------------------CcEEEeccCCCceEEEEECCcC
Confidence                                                                      345555    357999999999


Q ss_pred             CCCCCCeeEEEEEEEECCcCC-------ceEEEEEEEEEE
Q psy8629         406 DCETDPVPKLTVIATDNGVPA-------LSSSATVLVTIH  438 (483)
Q Consensus       406 D~E~~~~y~l~V~a~D~g~p~-------~s~~~~v~I~V~  438 (483)
                      |||....|.|+|+|+|.|.|+       ++++++|.|.|.
T Consensus       283 D~E~~~~y~l~V~A~D~g~pp~~~~~~~~s~~~~V~I~V~  322 (322)
T 2a62_A          283 DFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVVE  322 (322)
T ss_dssp             CCSSCCEEEEEEEEECCCSSCTTSSCCCCCCCCEEEEEEC
T ss_pred             CcccCCeEEEEEEEEECCCCCccccCCCcccEEEEEEEEC
Confidence            999999999999999999875       467888888873

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-49  Score=405.81  Aligned_cols=302  Identities=23%  Similarity=0.329  Sum_probs=264.2

Q ss_pred             eEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccC-----CCceEEEEEEeccCCCCCCC---CEEEEEEEEEECC
Q psy8629         168 VKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHRE-----KDGVLYLDLQINGVLDRETI---PEYSLVIEALDGG  239 (483)
Q Consensus       168 t~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~-----~~g~~~~~l~~~~~LD~E~~---~~~~l~v~a~D~g  239 (483)
                      ..+.+|.|+|+|.|.|+.++|+|.+++....|+|++..+     .+|.    |.+.++||||+.   ..|.|.|.|+|.|
T Consensus         9 ~Pv~~v~AtD~D~g~n~~v~Ysi~~~~~~~~F~I~~~~~~f~v~~tG~----i~~~~~LD~E~~~~~~~~~~~V~a~d~g   84 (419)
T 3ubh_A            9 RPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGA----VRVKKKWDYEELGPEKTIDFWVIITNMG   84 (419)
T ss_dssp             EEEEEEEEEGGGGCSTTCEEEECCCSSTTCEEEESSCCSSEEECTTSE----EEESSCCCGGGSCTTCEEEEEEEEEC--
T ss_pred             cceEEEEEEcccCCCCceEEEEEecCCCCceEEEcCCCccEEECCCcE----EEECCccCccccCccceEEEEEEEEeCC
Confidence            678999999999999999999998877778899986110     3566    788999999997   6999999999988


Q ss_pred             CC---CeeeEEEEEEEEEecCCCCCeecCCc--eEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceE
Q psy8629         240 SP---PLRGSMIVNVTIQDVNDNQPIFNQSR--YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFN  314 (483)
Q Consensus       240 ~p---~~~~~~~v~I~V~dvNd~~P~f~~~~--~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~  314 (483)
                      .|   ++++.+.|+|+|.|+|||+|.|....  |...|+|++++|+.|+++.|+|+|.|.+  ++|+|..  ++..+.|.
T Consensus        85 ~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~i~~--~~~~~~F~  160 (419)
T 3ubh_A           85 HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVR--DRTGGRFE  160 (419)
T ss_dssp             CCSSSCCEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEE--ESSSSCEE
T ss_pred             CCCCCCCcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEEEECCCCCce--eEEEEEe--CCCCCeEE
Confidence            65   67889999999999999999999876  7899999999999999999999999876  9999964  35568999


Q ss_pred             EeCCccEEEEcccCCCcccceeeeEeEEEE------------------Eee---------------eeeccCCCCeEEEE
Q psy8629         315 IDSKSGLIFVNKALDFETKEVHDLVPRFAV------------------EIS---------------SFDEIAEPGTSVFQ  361 (483)
Q Consensus       315 Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~------------------~v~---------------~v~E~~~~gt~v~~  361 (483)
                      |++.+|.|++++.||||....|.|+|+...                  .|.               .|.||+++|+.|++
T Consensus       161 I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~dndn~P~F~~~~y~~~v~En~~~gt~v~~  240 (419)
T 3ubh_A          161 VDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIIS  240 (419)
T ss_dssp             ECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEESCCCCEESSSCEEEEEETTCCTTCEEEE
T ss_pred             EeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEECCCCCCceecCeeEEEecCCCCCCcEEEE
Confidence            999999999999999999999999887321                  111               68899999999999


Q ss_pred             EEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCC---eeEEEEEEEECCcCCceEEEEEEEEEE
Q psy8629         362 ISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDP---VPKLTVIATDNGVPALSSSATVLVTIH  438 (483)
Q Consensus       362 v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~---~y~l~V~a~D~g~p~~s~~~~v~I~V~  438 (483)
                      +.|+|+|   |+.++|+|.. .++..++|.|++.+|.|++.++||||...   .|.|+|+|+|.+ ++++++++|+|.|.
T Consensus       241 v~A~D~d---n~~i~Ysi~~-~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~dd~-~~~s~~~~v~I~V~  315 (419)
T 3ubh_A          241 IKAKSFA---DREIRYTLKA-QGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVT  315 (419)
T ss_dssp             CCEECSS---CCCCEEEEEE-SSSCCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEEEEECTT-TSCEEEEEEEEEEE
T ss_pred             EEEecCC---CCceEEEEec-CCCCCCcEEEECCCCEEEECcccCccccccccEEEEEEEEEeCC-CCcEEEEEEEEEEE
Confidence            9999997   7889999974 24566899999999999999999999875   799999999764 45899999999999


Q ss_pred             ecCCCCCeecCCceEE-EEcCCCCCCcEEEEEEEEeCCCCC--CCcC
Q psy8629         439 DVNDNEPIFDQSFYNV-TIPENKPKGSCILKSIFYDIFNIS--EHSF  482 (483)
Q Consensus       439 dvNd~~P~f~~~~~~~-~V~E~~~~g~~v~~v~a~D~D~~~--~~~~  482 (483)
                      |+|||+|.|..+.|.. .|+|+.++|+.|++|.|+|+|.+.  .++|
T Consensus       316 DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y  362 (419)
T 3ubh_A          316 DVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEY  362 (419)
T ss_dssp             CCCCCCCEESSSEEEEEEEETTCCTTCEEEECCEECSSCGGGGCEEE
T ss_pred             ccCCCCCcccCCcceeEEecCCCCCCCEEEEEEEEeCCCCCCCEEEE
Confidence            9999999999999987 799999999999999999999643  5665

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=3.3e-49  Score=389.39  Aligned_cols=297  Identities=23%  Similarity=0.304  Sum_probs=246.3

Q ss_pred             CceEEEEEeCCCCCCeEEEEEEccCCCCCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCC-----ceeeEEEE
Q psy8629          17 EHLRDLEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETR-----SSYSLVAI   91 (483)
Q Consensus        17 ~~~~~~~v~En~~~gt~V~~v~a~d~d~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~-----~~y~l~v~   91 (483)
                      ..+|.++.+|+.+.|++++++.+.+.   ...|+|...     ..+|.|++ +|+|+++++||||..     ..|.|.+.
T Consensus         6 ~~~~~atd~D~g~ng~v~y~l~~~~~---~~~f~i~~~-----~~~F~i~~-tG~l~~~~~LD~E~~~~~~~~~~~l~v~   76 (316)
T 3ubf_A            6 TKRIEFTEADGDTEGKSVFQLEKETD---KETFKIRDD-----NPWVTVET-NGAVRVKKKWDYEELGPEKTIDFWVIIT   76 (316)
T ss_dssp             EEEEEEESGGGCSTTCEEEECCCSST---TCEEEESSC-----CSSEEECT-TSEEEESSCCCGGGSCTTCEEEEEEEEE
T ss_pred             eEEEEEEecCCCCCceEEEEEEcCCC---cceEEEeCC-----CCeEEECC-CeEEEECCccChhhcccccceEEEEEEE
Confidence            35789999999999999999988653   578999853     23899998 999999999999985     35666666


Q ss_pred             ecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCc--eEEEEeCCCCCCeE
Q psy8629          92 PLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPF--MSIEFPENTPRDVK  169 (483)
Q Consensus        92 a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~--~~~~V~E~~~~gt~  169 (483)
                      |.|++..                              ..-..++.|.|.|.|+|||+|.|....  |.+.|+|++++|+.
T Consensus        77 a~d~~~~------------------------------~~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~  126 (316)
T 3ubf_A           77 NMGHNAG------------------------------IKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP  126 (316)
T ss_dssp             C-------------------------------------CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCE
T ss_pred             EcCCCCC------------------------------CcccceEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCE
Confidence            6554310                              001126889999999999999999887  89999999999999


Q ss_pred             EEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECCC----CCeee
Q psy8629         170 RTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGS----PPLRG  245 (483)
Q Consensus       170 v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~----p~~~~  245 (483)
                      |+++.|+|+|.|.|  ++|+|..++..+.|.|++   .+|.    |.+.++||||....|.|+|+|+|+|+    |++++
T Consensus       127 v~~v~A~D~D~g~n--i~Y~i~~~~~~~~F~Id~---~tG~----i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~  197 (316)
T 3ubf_A          127 VFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDE---RSGV----VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQS  197 (316)
T ss_dssp             EEECCEECSSTTCC--EEEEEEEEESSSCEEECT---TTCE----EEECSSCCCCTTCEEEEEEEEEESCC-------CB
T ss_pred             EEEEEEECCCCCCc--eEEEEEeCCCCCEEEEEC---CccE----EEECCcCCcccCcEEEEEEEEEeCCCCCCCccccc
Confidence            99999999999876  899999877788999998   4566    78899999999999999999999885    46888


Q ss_pred             EEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEc
Q psy8629         246 SMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVN  325 (483)
Q Consensus       246 ~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~  325 (483)
                      ++.++|.|.| |||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|   ++.++|+|...                    
T Consensus       198 ~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D---n~~i~Y~i~~~--------------------  253 (316)
T 3ubf_A          198 TPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQ--------------------  253 (316)
T ss_dssp             CCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEEECCEECTT---CCCEEEEEEEE--------------------
T ss_pred             eEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEEEEEEEeCC---CCEEEEEEEcC--------------------
Confidence            9999999999 99999999999999999999999999999999998   56788887420                    


Q ss_pred             ccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccC
Q psy8629         326 KALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNV  405 (483)
Q Consensus       326 ~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~l  405 (483)
                                                                                ++..++|.|++.+|.|++.++|
T Consensus       254 ----------------------------------------------------------~~~~~~F~Id~~tG~i~~~~~L  275 (316)
T 3ubf_A          254 ----------------------------------------------------------GQGAGTFNIGPTSGIVKLAKEL  275 (316)
T ss_dssp             ----------------------------------------------------------SSCTTTEEECTTTCEEEECSCC
T ss_pred             ----------------------------------------------------------CCCCCeEEEECCeEEEEECCcC
Confidence                                                                      2235678888889999999999


Q ss_pred             CCCCC---CeeEEEEEEEECCcCCceEEEEEEEEEEecCCCC
Q psy8629         406 DCETD---PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNE  444 (483)
Q Consensus       406 D~E~~---~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~  444 (483)
                      |||..   ..|.|+|+|+|.+. +++++++|+|+|.|+||||
T Consensus       276 D~E~~~~~~~y~l~V~A~dd~g-~~~~~~~v~I~V~DvNDn~  316 (316)
T 3ubf_A          276 DFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVNDNA  316 (316)
T ss_dssp             CSSCTTSCSEEEEEEEEEESSS-SCEEEEEEEEEEECC----
T ss_pred             CccccCCCceEEEEEEEEECCC-CCEEEEEEEEEEEecCCCC
Confidence            99987   79999999996433 5899999999999999986

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=1.6e-42  Score=341.37  Aligned_cols=236  Identities=32%  Similarity=0.457  Sum_probs=208.6

Q ss_pred             EEEEeCC--CCCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEE
Q psy8629         157 SIEFPEN--TPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIE  234 (483)
Q Consensus       157 ~~~V~E~--~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~  234 (483)
                      .+.|+|+  .+.|+.|+++. +|+|.| ++.++|+|.+++....|.|++.   +|.    |.+.++||||....|.|+|+
T Consensus         6 ~~~v~E~~~~~~~~~v~~va-~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~l~v~   76 (322)
T 2a62_A            6 QMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDI---TGD----IHAIKRLDREEKAEYTLTAQ   76 (322)
T ss_dssp             CEECCCSCCCSSCEECCCCC-CCCCCS-SCCCEEEEEETTBTTTEEEETT---TTE----EEECSCCCTTTCSBCCEEEE
T ss_pred             eeeeccccCCCCCEEEEEEE-EcCCCC-CCEEEEEEECCCCCCcEEEeCC---cCE----EEEeccCCcccccEEEEEEE
Confidence            4788999  88999999986 899988 6789999987665679999984   566    77899999999999999999


Q ss_pred             EEECCC-CCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCC---CCccEEEEEEEecCCCCC
Q psy8629         235 ALDGGS-PPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA---GSNGEVEYSINRRQSDKD  310 (483)
Q Consensus       235 a~D~g~-p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~---~~~~~i~y~i~~~~~~~~  310 (483)
                      |+|+++ +++++.+.++|+|.|+|||+|.|....|.+.|+|++++|+.|+++.|+|+|.   |.|+.++|+|        
T Consensus        77 a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i--------  148 (322)
T 2a62_A           77 AVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSI--------  148 (322)
T ss_dssp             EECTTTCSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCCCCCBCSCSSSTTSSCEEEEE--------
T ss_pred             EEECCCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCccEEEEEEE--------
Confidence            999875 5688899999999999999999999999999999999999999999999995   4444555554        


Q ss_pred             cceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcE
Q psy8629         311 GLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWF  390 (483)
Q Consensus       311 ~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F  390 (483)
                                                                                           ..+    ..+|
T Consensus       149 ---------------------------------------------------------------------~~~----~~~F  155 (322)
T 2a62_A          149 ---------------------------------------------------------------------LEG----QPYF  155 (322)
T ss_dssp             ---------------------------------------------------------------------EEC----TTTE
T ss_pred             ---------------------------------------------------------------------ccC----CCCE
Confidence                                                                                 321    2468


Q ss_pred             EEeCCCcEEEEc-ccCCCCCCCeeEEEEEEEECCcCC--ceEEEEEEEEEEecCCCCCeecCCceEEEEcCCCCCCcEEE
Q psy8629         391 QIDSKSGLITMK-SNVDCETDPVPKLTVIATDNGVPA--LSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCIL  467 (483)
Q Consensus       391 ~id~~tG~i~~~-~~lD~E~~~~y~l~V~a~D~g~p~--~s~~~~v~I~V~dvNd~~P~f~~~~~~~~V~E~~~~g~~v~  467 (483)
                      .|++.+|.|++. +.||||....|.|+|+|+|+|.|+  ++++++|+|+|.|+|||+|.|.+..|.+.|+|++++|+.|+
T Consensus       156 ~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~  235 (322)
T 2a62_A          156 SIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIG  235 (322)
T ss_dssp             EECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEECCCCCCCCCCSCSEEEEEECSCCSSCCEEE
T ss_pred             EEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEEecCCCCCeecCCCceeEeECCCCCCcEEE
Confidence            888889999988 899999999999999999999874  89999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCC--CCCcC
Q psy8629         468 KSIFYDIFNI--SEHSF  482 (483)
Q Consensus       468 ~v~a~D~D~~--~~~~~  482 (483)
                      +|.|+|+|..  +.++|
T Consensus       236 ~v~A~D~D~g~n~~i~Y  252 (322)
T 2a62_A          236 RVKANDQDIGENAQSSY  252 (322)
T ss_dssp             EEECCCSSCGGGTCCEE
T ss_pred             EEEEEeCCCCCCceEEE
Confidence            9999999964  35655

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=2.3e-39  Score=300.15  Aligned_cols=205  Identities=33%  Similarity=0.501  Sum_probs=184.2

Q ss_pred             CCCCccCCCceE--EEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCC
Q psy8629         146 DNAPTFPSPFMS--IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDR  223 (483)
Q Consensus       146 D~~P~f~~~~~~--~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~  223 (483)
                      |++|.|....|.  +.|+|++++|+.|+++.|+|+|.+   .++|+|.+++..+.|.|++.   +|.    |.+.++|||
T Consensus         3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~~---~~~y~i~~~~~~~~F~Id~~---tG~----i~~~~~LD~   72 (210)
T 3mvs_A            3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND---PLVFGVSGEEASRFFAVEPD---TGV----VWLRQPLDR   72 (210)
T ss_dssp             CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTCC---CCEEEEESHHHHHHEEECTT---TCE----EEESSCCCT
T ss_pred             CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCCC---cEEEEEeCCCCCCcEEEeCC---CCE----EEECCccCC
Confidence            569999999997  799999999999999999999964   58999987655678999984   566    788999999


Q ss_pred             CCCCEEEEEEEEEECCCCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEE
Q psy8629         224 ETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSIN  303 (483)
Q Consensus       224 E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~  303 (483)
                      |....|.|.|.|+|+++   .+++.++|+|.|+|||+|.|.+..|.+.|+|+.+.|+.|+++.|+|+|.|.++.++|+|.
T Consensus        73 E~~~~y~l~v~a~D~~~---~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~  149 (210)
T 3mvs_A           73 ETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQ  149 (210)
T ss_dssp             TTCCEEEEEEEEECSSC---EEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEECCEECCSSGGGGCEEEEES
T ss_pred             cccceEEEEEEEEeCCC---CEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEe
Confidence            99999999999999876   467899999999999999999999999999999999999999999999988777777772


Q ss_pred             ecCCCCCcceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCC
Q psy8629         304 RRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENT  383 (483)
Q Consensus       304 ~~~~~~~~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~  383 (483)
                      .                                                                               
T Consensus       150 ~-------------------------------------------------------------------------------  150 (210)
T 3mvs_A          150 P-------------------------------------------------------------------------------  150 (210)
T ss_dssp             S-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             CCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECC-cCCceEEEEEEEEEEecCCCC
Q psy8629         384 DDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNG-VPALSSSATVLVTIHDVNDNE  444 (483)
Q Consensus       384 ~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g-~p~~s~~~~v~I~V~dvNd~~  444 (483)
                        ..++|.|++.+|.|++.++||||....|.|+|+|+|.| .|+++++++++|+|.|+||||
T Consensus       151 --~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          151 --PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             --CCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEEEECCCCCC
T ss_pred             --CCCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEEEEccCCCC
Confidence              12478888899999999999999999999999999998 578999999999999999986

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=314.36  Aligned_cols=214  Identities=17%  Similarity=0.113  Sum_probs=181.1

Q ss_pred             hhcCceEEEEEeCCCCCCeEEEEEEccCCCC-CCCCEEEEec------CCCCCcccEEEeCCccEEEeCccCCccCCcee
Q psy8629          14 AADEHLRDLEISEGVPVGTRVGFIGDGFVGD-SGPPYLIVPV------PGSAVDTDLSIEQNTGEIRTKVPLDRETRSSY   86 (483)
Q Consensus        14 ~~~~~~~~~~v~En~~~gt~V~~v~a~d~d~-~~~~y~i~~~------~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y   86 (483)
                      .|.+..|.++|+||+++|+.|++++|+|.|. ..+.|+|...      ...+...+|.|++.||+|+++++||||....|
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y   81 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKL   81 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEEECCSEEECTTTCEEEESSCBCHHHHHHH
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCCCCCEEEECCCcEEEEECCcCChhHhhhh
Confidence            5899999999999999999999999999883 3567777510      00113358999999999999999999999999


Q ss_pred             ------------eEEEEecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCc----
Q psy8629          87 ------------SLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPT----  150 (483)
Q Consensus        87 ------------~l~v~a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~----  150 (483)
                                  .|.|.|.|++...                             .....++.|.|+|.|+|||+|.    
T Consensus        82 ~~~~~G~p~~~~~l~V~a~D~g~~~-----------------------------~~~~~~~~v~I~V~DvNDn~P~~~~~  132 (246)
T 2x2u_A           82 SVRNRGFPLLTVYLKVFLSPTSLRE-----------------------------GECQWPGCARVYFSFFNTSFPACSSL  132 (246)
T ss_dssp             HHTSTTSCCCEEEEEEECC------------------------------------CCCTTTEEEEEEEEESSCCCCGGGC
T ss_pred             ccccCCCcccceEEEEEEEcCCCCC-----------------------------CcccceEEEEEEEEECCCCCCccccc
Confidence                        8888888765210                             0122367899999999999999    


Q ss_pred             ------cCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCC
Q psy8629         151 ------FPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRE  224 (483)
Q Consensus       151 ------f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E  224 (483)
                            |....|.+.|+|+.++|+.|+++.|+|+|.|.|+.++|+|.+++ ...|.|++.   +|.    |.+.++||||
T Consensus       133 ~~~~~~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~-~~~F~Id~~---tG~----i~~~~~LDrE  204 (246)
T 2x2u_A          133 KPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE-GLPFRSAPD---SLE----VSTRWALDRE  204 (246)
T ss_dssp             CHHHHHSCSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCT-TSSEECCTT---CCE----EEESSCBCTT
T ss_pred             cccccccCCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCC-CCCEEEECC---cCE----EEeCCccCcc
Confidence                  99999999999999999999999999999999999999999875 679999984   566    7889999999


Q ss_pred             CCCEEEEEEEEEE-CCCCCeeeEEEEEEEEEecCCCCCeec
Q psy8629         225 TIPEYSLVIEALD-GGSPPLRGSMIVNVTIQDVNDNQPIFN  264 (483)
Q Consensus       225 ~~~~~~l~v~a~D-~g~p~~~~~~~v~I~V~dvNd~~P~f~  264 (483)
                      ....|.|+|.|+| .|+|+++++++|+|+|+|+|||+|.|.
T Consensus       205 ~~~~y~l~V~A~d~dg~p~~ss~~~v~I~V~DvNDn~P~F~  245 (246)
T 2x2u_A          205 QREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE  245 (246)
T ss_dssp             TCSEEEEEEEEEEC---CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred             ccceEEEEEEEEecCCCCcceEEEEEEEEEEEeCCCCCccC
Confidence            9999999999998 666999999999999999999999995

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=1.3e-38  Score=295.33  Aligned_cols=201  Identities=30%  Similarity=0.459  Sum_probs=171.5

Q ss_pred             eEEEEeCCC--CCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEE
Q psy8629         156 MSIEFPENT--PRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVI  233 (483)
Q Consensus       156 ~~~~V~E~~--~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v  233 (483)
                      |.+.|.|+.  +.|+.|+++ |+|+|.| ++.++|+|.+++....|.|++.   +|.    |.+.++||||....|.|+|
T Consensus         6 ~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~l~v   76 (215)
T 2a4e_A            6 NQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGEGAGTIFVIDDK---SGN----IHATKTLDREERAQYTLMA   76 (215)
T ss_dssp             CEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEETTBTTTEEECTT---TCE----EEECSCCCTTTCSEEEEEE
T ss_pred             eeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECCCCCCeEEEECC---ceE----EEECCccCCccCCEEEEEE
Confidence            578999994  689999998 7999998 7899999988665679999984   566    7788999999999999999


Q ss_pred             EEEECCC-CCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCC---CCccEEEEEEEecCCCC
Q psy8629         234 EALDGGS-PPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA---GSNGEVEYSINRRQSDK  309 (483)
Q Consensus       234 ~a~D~g~-p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~---~~~~~i~y~i~~~~~~~  309 (483)
                      +|+|++. +++++++.|+|+|.|+|||+|.|.+..|.++|+|+++.|+.|+++.|+|+|.   |.|+.++|+|       
T Consensus        77 ~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~D~D~~~~G~n~~i~Y~i-------  149 (215)
T 2a4e_A           77 QAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSI-------  149 (215)
T ss_dssp             EEEETTTCCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCEECSSCTTTCSSSCCEEEE-------
T ss_pred             EEEECCCCCcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEEEECCCCCCCCceEEEEEE-------
Confidence            9999875 6789999999999999999999999999999999999999999999999996   5555555555       


Q ss_pred             CcceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCc
Q psy8629         310 DGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSW  389 (483)
Q Consensus       310 ~~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~  389 (483)
                                                                                            ..+    ...
T Consensus       150 ----------------------------------------------------------------------~~~----~~~  155 (215)
T 2a4e_A          150 ----------------------------------------------------------------------LEG----QPY  155 (215)
T ss_dssp             ----------------------------------------------------------------------EES----TTT
T ss_pred             ----------------------------------------------------------------------eCC----CCc
Confidence                                                                                  321    246


Q ss_pred             EEEeCCCcEEEEc-ccCCCCCCCeeEEEEEEEECCcC--CceEEEEEEEEEEecCCCCCe
Q psy8629         390 FQIDSKSGLITMK-SNVDCETDPVPKLTVIATDNGVP--ALSSSATVLVTIHDVNDNEPI  446 (483)
Q Consensus       390 F~id~~tG~i~~~-~~lD~E~~~~y~l~V~a~D~g~p--~~s~~~~v~I~V~dvNd~~P~  446 (483)
                      |.|++.+|.|++. +.||||....|.|+|+|+|+|.|  +++++++|+|+|.|+|||+|.
T Consensus       156 F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          156 FSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK  215 (215)
T ss_dssp             EEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEEEEEEEEC-------
T ss_pred             EEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEEEEEEEEECCCCCCC
Confidence            8899999999998 99999999999999999999976  689999999999999999995

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=315.23  Aligned_cols=211  Identities=17%  Similarity=0.079  Sum_probs=180.4

Q ss_pred             ccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCC--CceEE------EEEEeCCCCCceEEecccCCCceEEEEEEeccCC
Q psy8629         150 TFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGI--YNTQR------YNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVL  221 (483)
Q Consensus       150 ~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~--~~~~~------y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~L  221 (483)
                      .|.+..|.+.|+|++++|+.|+++.|+|+|.|.  +..+.      |++.++ ...+|.|++.   +|.    |.+.++|
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~-~~~~F~Id~~---tG~----i~~~~~L   73 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLH-ENNWIRIQED---TGL----LYLQRSL   73 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEE-ECCSEEECTT---TCE----EEESSCB
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCC-CCCEEEECCC---cEE----EEECCcC
Confidence            488999999999999999999999999999854  44554      665544 3579999984   566    7889999


Q ss_pred             CCCCCCEE------------EEEEEEEECCCC--CeeeEEEEEEEEEecCCCCCe----------ecCCceEEEecCCCC
Q psy8629         222 DRETIPEY------------SLVIEALDGGSP--PLRGSMIVNVTIQDVNDNQPI----------FNQSRYFATVPENAT  277 (483)
Q Consensus       222 D~E~~~~~------------~l~v~a~D~g~p--~~~~~~~v~I~V~dvNd~~P~----------f~~~~~~~~v~E~~~  277 (483)
                      |||....|            .|+|.|+|+|.|  ++++++.|+|+|.|+|||+|.          |.+..|.+.|+||.+
T Consensus        74 DrE~~~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~  153 (246)
T 2x2u_A           74 DHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRP  153 (246)
T ss_dssp             CHHHHHHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSC
T ss_pred             ChhHhhhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCC
Confidence            99999999            999999999987  688899999999999999999          999999999999999


Q ss_pred             CCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCe
Q psy8629         278 VGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGT  357 (483)
Q Consensus       278 ~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt  357 (483)
                      +|+.|+++.|+|+|.|.|+.++|+|..                                                     
T Consensus       154 ~Gt~v~~v~A~D~D~g~n~~i~Y~i~~-----------------------------------------------------  180 (246)
T 2x2u_A          154 PGTFHQFRLLPVQFLCPQISVAYRLLE-----------------------------------------------------  180 (246)
T ss_dssp             CCEEEECSCHHHHHHCTTSCEEEEEES-----------------------------------------------------
T ss_pred             CCcEEEEEEEEcCCCCCCcEEEEEEcc-----------------------------------------------------
Confidence            999999999999998877777777742                                                     


Q ss_pred             EEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEE-CCcCCceEEEEEEEE
Q psy8629         358 SVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATD-NGVPALSSSATVLVT  436 (483)
Q Consensus       358 ~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D-~g~p~~s~~~~v~I~  436 (483)
                                                + ...+|.|++.+|.|++.++||||....|.|+|+|+| .|.|+++++++|.|+
T Consensus       181 --------------------------~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~p~~ss~~~v~I~  233 (246)
T 2x2u_A          181 --------------------------G-EGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVT  233 (246)
T ss_dssp             --------------------------C-TTSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---CCEEEEEEEEEE
T ss_pred             --------------------------C-CCCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCCCcceEEEEEEEE
Confidence                                      1 135688888899999999999999999999999998 677999999999999


Q ss_pred             EEecCCCCCeec
Q psy8629         437 IHDVNDNEPIFD  448 (483)
Q Consensus       437 V~dvNd~~P~f~  448 (483)
                      |.|+|||+|.|.
T Consensus       234 V~DvNDn~P~F~  245 (246)
T 2x2u_A          234 VYDEDDSAPEFE  245 (246)
T ss_dssp             EECSSCCSCCCC
T ss_pred             EEEeCCCCCccC
Confidence            999999999996

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=1.9e-38  Score=293.98  Aligned_cols=203  Identities=29%  Similarity=0.374  Sum_probs=181.8

Q ss_pred             HhhhcCceEE--EEEeCCCCCCeEEEEEEccCCCCCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCceeeEE
Q psy8629          12 AVAADEHLRD--LEISEGVPVGTRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLV   89 (483)
Q Consensus        12 ~~~~~~~~~~--~~v~En~~~gt~V~~v~a~d~d~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~   89 (483)
                      ++.|.+..|.  ++|+||+++|+.|+++.|+|+|+..+.|+|...   +...+|.|++.+|.|+++++||||....|.|.
T Consensus         5 ~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~~~~~y~i~~~---~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~   81 (210)
T 3mvs_A            5 LPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGE---EASRFFAVEPDTGVVWLRQPLDRETKSEFTVE   81 (210)
T ss_dssp             CCEECCGGGTSCEEEETTCCTTCEEEECCEECTTCCCCEEEEESH---HHHHHEEECTTTCEEEESSCCCTTTCCEEEEE
T ss_pred             CCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCCCcEEEEEeCC---CCCCcEEEeCCCCEEEECCccCCcccceEEEE
Confidence            3568888887  799999999999999999999988899999843   23458999999999999999999999999999


Q ss_pred             EEecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeE
Q psy8629          90 AIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVK  169 (483)
Q Consensus        90 v~a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~  169 (483)
                      +.|.|++..                                  .++.+.|+|.|+|||+|.|....|.+.|+|+.++|+.
T Consensus        82 v~a~D~~~~----------------------------------~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~  127 (210)
T 3mvs_A           82 FSVSDHQGV----------------------------------ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP  127 (210)
T ss_dssp             EEEECSSCE----------------------------------EEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCE
T ss_pred             EEEEeCCCC----------------------------------EEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCE
Confidence            988886521                                  1468999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEECC-CCCeeeEEE
Q psy8629         170 RTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGG-SPPLRGSMI  248 (483)
Q Consensus       170 v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g-~p~~~~~~~  248 (483)
                      |+++.|+|+|.|.|+.++|+|.++  ...|.|++   .+|.    |.+.++||||....|.|+|+|+|+| .|+++++++
T Consensus       128 v~~v~A~D~D~g~n~~v~Y~i~~~--~~~F~Id~---~tG~----i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~  198 (210)
T 3mvs_A          128 IFIVNATDPDLGAGGSVLYSFQPP--SPFFAIDS---ARGI----VTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLAN  198 (210)
T ss_dssp             EEECCEECCSSGGGGCEEEEESSC--CSSEEECT---TTCE----EEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEE
T ss_pred             EEEEEEEeCCCCCCceEEEEEeCC--CCCEEEeC---CcEE----EEECCcCCCcccceEEEEEEEEECCCCCCCEEEEE
Confidence            999999999999999999999764  46999998   4566    7888999999999999999999988 578999999


Q ss_pred             EEEEEEecCCCC
Q psy8629         249 VNVTIQDVNDNQ  260 (483)
Q Consensus       249 v~I~V~dvNd~~  260 (483)
                      ++|+|.|+||||
T Consensus       199 v~I~V~DvND~~  210 (210)
T 3mvs_A          199 LAIIITDMQDMD  210 (210)
T ss_dssp             EEEEEECCCCCC
T ss_pred             EEEEEEccCCCC
Confidence            999999999975

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=6.2e-38  Score=308.83  Aligned_cols=228  Identities=21%  Similarity=0.297  Sum_probs=184.8

Q ss_pred             eEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccC-----CCceEEEEEEeccCCCCCCC-----CEEEEEEEEEE
Q psy8629         168 VKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHRE-----KDGVLYLDLQINGVLDRETI-----PEYSLVIEALD  237 (483)
Q Consensus       168 t~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~-----~~g~~~~~l~~~~~LD~E~~-----~~~~l~v~a~D  237 (483)
                      ..+.++.|+|+|.+.++.+.|+|..+++...|+|....+     .+|.    |.+.++||||..     ..|.|.|+|.|
T Consensus         4 ~p~~~~~atd~D~g~ng~v~y~l~~~~~~~~f~i~~~~~~F~i~~tG~----l~~~~~LD~E~~~~~~~~~~~l~v~a~d   79 (316)
T 3ubf_A            4 RPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGA----VRVKKKWDYEELGPEKTIDFWVIITNMG   79 (316)
T ss_dssp             EEEEEEEEESGGGCSTTCEEEECCCSSTTCEEEESSCCSSEEECTTSE----EEESSCCCGGGSCTTCEEEEEEEEEC--
T ss_pred             CceEEEEEEecCCCCCceEEEEEEcCCCcceEEEeCCCCeEEECCCeE----EEECCccChhhcccccceEEEEEEEEcC
Confidence            456778888888888888888877655444444442110     2566    788999999984     57999999999


Q ss_pred             CCCC-CeeeEEEEEEEEEecCCCCCeecCCc--eEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceE
Q psy8629         238 GGSP-PLRGSMIVNVTIQDVNDNQPIFNQSR--YFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFN  314 (483)
Q Consensus       238 ~g~p-~~~~~~~v~I~V~dvNd~~P~f~~~~--~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~  314 (483)
                      ++.| ++++++.|+|+|.|+|||+|.|....  |.+.|+|++++|+.|+++.|+|+|.|.+  ++|+|..          
T Consensus        80 ~~~~~~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n--i~Y~i~~----------  147 (316)
T 3ubf_A           80 HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVR----------  147 (316)
T ss_dssp             -----CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEE----------
T ss_pred             CCCCCcccceEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCEEEEEEEECCCCCCc--eEEEEEe----------
Confidence            8876 67999999999999999999999886  8999999999999999999999998765  7777732          


Q ss_pred             EeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeC
Q psy8629         315 IDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDS  394 (483)
Q Consensus       315 Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~  394 (483)
                                                                                           ++..++|.|++
T Consensus       148 ---------------------------------------------------------------------~~~~~~F~Id~  158 (316)
T 3ubf_A          148 ---------------------------------------------------------------------DRTGGRFEVDE  158 (316)
T ss_dssp             ---------------------------------------------------------------------EESSSCEEECT
T ss_pred             ---------------------------------------------------------------------CCCCCEEEEEC
Confidence                                                                                 12345788888


Q ss_pred             CCcEEEEcccCCCCCCCeeEEEEEEEECCc----CCceEEEEEEEEEEecCCCCCeecCCceEEEEcCCCCCCcEEEEEE
Q psy8629         395 KSGLITMKSNVDCETDPVPKLTVIATDNGV----PALSSSATVLVTIHDVNDNEPIFDQSFYNVTIPENKPKGSCILKSI  470 (483)
Q Consensus       395 ~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~----p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~V~E~~~~g~~v~~v~  470 (483)
                      .+|.|++.++||||....|.|+|+|+|+|.    |+++++++++|.|.| |||+|.|.+..|.+.|+||.++|+.|++|.
T Consensus       159 ~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~~v~  237 (316)
T 3ubf_A          159 RSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIK  237 (316)
T ss_dssp             TTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEEECC
T ss_pred             CccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEEEEE
Confidence            999999999999999999999999999984    468889999999999 999999999999999999999999999999


Q ss_pred             EEeCCCCCCCcC
Q psy8629         471 FYDIFNISEHSF  482 (483)
Q Consensus       471 a~D~D~~~~~~~  482 (483)
                      |+|+| ++.++|
T Consensus       238 A~D~D-n~~i~Y  248 (316)
T 3ubf_A          238 AKSFA-DREIRY  248 (316)
T ss_dssp             EECTT-CCCEEE
T ss_pred             EEeCC-CCEEEE
Confidence            99999 456666

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=8.3e-37  Score=283.23  Aligned_cols=200  Identities=27%  Similarity=0.401  Sum_probs=167.6

Q ss_pred             EEEEEeCCC--CCCeEEEEEEccCCC--CCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCceeeEEEEecCC
Q psy8629          20 RDLEISEGV--PVGTRVGFIGDGFVG--DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSG   95 (483)
Q Consensus        20 ~~~~v~En~--~~gt~V~~v~a~d~d--~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d~   95 (483)
                      |.+.|.||.  |.|++|+++ |+|+|  +..++|+|...   +....|+|++.+|+|++.++||||....|.|.+.|.|+
T Consensus         6 ~~~~v~En~~~p~~~~v~~v-a~D~D~gn~~i~Y~l~~~---~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~   81 (215)
T 2a4e_A            6 NQFFVIEEYTGPDPVLVGRL-HSDIDSGDGNIKYILSGE---GAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDR   81 (215)
T ss_dssp             CEEEEETTCCSSSCEEEEEC-CCTTCCSSSCEEEEEEET---TBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred             eeEEEeccCCCCCCEEEEEE-EECCCCCCCeEEEEEECC---CCCCeEEEECCceEEEECCccCCccCCEEEEEEEEEEC
Confidence            578999994  689999999 78977  35679999853   23458999999999999999999999999999999886


Q ss_pred             cceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEE
Q psy8629          96 ENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAA  175 (483)
Q Consensus        96 ~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a  175 (483)
                      +...                      ..        ..++.|.|+|.|+|||+|.|....|.+.|+|++++|+.|+++.|
T Consensus        82 ~~~~----------------------~~--------~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A  131 (215)
T 2a4e_A           82 DTNR----------------------PL--------EPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTA  131 (215)
T ss_dssp             TTCC----------------------EE--------EEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCE
T ss_pred             CCCC----------------------cc--------cccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEE
Confidence            5210                      00        01568999999999999999999999999999999999999999


Q ss_pred             EeCCC---CCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEec-cCCCCCCCCEEEEEEEEEECCCC--CeeeEEEE
Q psy8629         176 KDRDL---GIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQIN-GVLDRETIPEYSLVIEALDGGSP--PLRGSMIV  249 (483)
Q Consensus       176 ~D~D~---~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~-~~LD~E~~~~~~l~v~a~D~g~p--~~~~~~~v  249 (483)
                      +|+|.   |.|+.++|+|.+++  ..|.|++   .+|.    |.+. ++||||....|.|.|+|+|+|.|  +++++++|
T Consensus       132 ~D~D~~~~G~n~~i~Y~i~~~~--~~F~Id~---~tG~----I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~v  202 (215)
T 2a4e_A          132 SDADDPTYGNSAKLVYSILEGQ--PYFSVEA---QTGI----IRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKV  202 (215)
T ss_dssp             ECSSCTTTCSSSCCEEEEEEST--TTEEECT---TTCE----EEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEEE
T ss_pred             EECCCCCCCCceEEEEEEeCCC--CcEEEeC---CccE----EEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEEE
Confidence            99997   88899999999874  5899998   4566    6777 89999999999999999999976  68999999


Q ss_pred             EEEEEecCCCCCe
Q psy8629         250 NVTIQDVNDNQPI  262 (483)
Q Consensus       250 ~I~V~dvNd~~P~  262 (483)
                      +|+|.|+|||+|.
T Consensus       203 ~I~V~DvNDn~P~  215 (215)
T 2a4e_A          203 TITLTDDYKDDDK  215 (215)
T ss_dssp             EEEEEC-------
T ss_pred             EEEEEECCCCCCC
Confidence            9999999999995

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=1.6e-35  Score=274.98  Aligned_cols=200  Identities=28%  Similarity=0.388  Sum_probs=176.9

Q ss_pred             EEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCC----CCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEE
Q psy8629         157 SIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGN----TNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLV  232 (483)
Q Consensus       157 ~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~----~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~  232 (483)
                      .+.|+||++ |+.++++.+.|.|.+.|+.++|+|.+++    +.+.|.|++.   +|.    |.+.++||||..+.|.|+
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~l~   77 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPI---SGQ----LSVTKPLDRELIARFHLR   77 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTT---TCE----EEECSCCCTTTCSEEEEE
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCC---ccE----EEECcccCcccCCeEEEE
Confidence            489999999 8888889999999999999999999753    3578999984   566    778899999999999999


Q ss_pred             EEEEECCCCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCC--CCccEEEEEEEecCCCCC
Q psy8629         233 IEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA--GSNGEVEYSINRRQSDKD  310 (483)
Q Consensus       233 v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~--~~~~~i~y~i~~~~~~~~  310 (483)
                      |+|+|+|+|++++++.|+|+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.  |.|+.++|+|...  +. 
T Consensus        78 v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~--~~-  154 (215)
T 2qvi_A           78 AHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQ--AP-  154 (215)
T ss_dssp             EEEEETTTCCCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEEC--SS-
T ss_pred             EEEEECCCCceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecC--CC-
Confidence            999999999999999999999999999999999999999999999999999999999998  6777888887531  00 


Q ss_pred             cceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcE
Q psy8629         311 GLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWF  390 (483)
Q Consensus       311 ~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F  390 (483)
                                                                                              ..+..+.|
T Consensus       155 ------------------------------------------------------------------------~~~~~~~F  162 (215)
T 2qvi_A          155 ------------------------------------------------------------------------STPSPNMF  162 (215)
T ss_dssp             ------------------------------------------------------------------------CCSSTTCE
T ss_pred             ------------------------------------------------------------------------CCCcCCeE
Confidence                                                                                    01135689


Q ss_pred             EEeCCCcEEEEc-ccCCCCCCCeeEEEEEEEECCcC---CceEEEEEEEEEEe
Q psy8629         391 QIDSKSGLITMK-SNVDCETDPVPKLTVIATDNGVP---ALSSSATVLVTIHD  439 (483)
Q Consensus       391 ~id~~tG~i~~~-~~lD~E~~~~y~l~V~a~D~g~p---~~s~~~~v~I~V~d  439 (483)
                      .|++.+|.|++. ++||||....|.|+|+|+|.|.|   +++++++|.|+|+|
T Consensus       163 ~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~V~D  215 (215)
T 2qvi_A          163 TINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  215 (215)
T ss_dssp             EECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEEECC
T ss_pred             EEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceEEEEEEEEEC
Confidence            999999999985 78999999999999999999887   79999999999987

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=9.5e-35  Score=269.78  Aligned_cols=198  Identities=31%  Similarity=0.443  Sum_probs=175.3

Q ss_pred             EEEEeCCCC--CCeEEEEEEEEeCCCCCCceEEEEEEeC----CCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEE
Q psy8629         157 SIEFPENTP--RDVKRTLNAAKDRDLGIYNTQRYNIVSG----NTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYS  230 (483)
Q Consensus       157 ~~~V~E~~~--~gt~v~~v~a~D~D~~~~~~~~y~l~~~----~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~  230 (483)
                      .+.|+||.+  .|+.++++.| |.|.  |+.++|+|.++    ++.+.|.|++.   +|.    |.+.++||||....|.
T Consensus         6 ~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~   75 (213)
T 3qrb_A            6 AISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERE---TGW----LKVTQPLDREAIAKYI   75 (213)
T ss_dssp             EEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTT---TCE----EEECSCCCTTTCSEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECC---CCE----EEECCccCcccCceEE
Confidence            689999998  7788999999 7775  78999999974    33458999984   566    7888999999999999


Q ss_pred             EEEEEEECCCCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCC---CccEEEEEEEecCC
Q psy8629         231 LVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAG---SNGEVEYSINRRQS  307 (483)
Q Consensus       231 l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~---~~~~i~y~i~~~~~  307 (483)
                      |+|.|+|+++|++++++.++|+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.+   .|+.++|+|...  
T Consensus        76 l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~~~~n~~i~Y~i~~~--  153 (213)
T 3qrb_A           76 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ--  153 (213)
T ss_dssp             EEEEEEETTSCBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTSSTTCCEEEEEEE--
T ss_pred             EEEEEEeCCCCcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEEeCCCCCCCcCcEEEEEEccC--
Confidence            999999999999999999999999999999999999999999999999999999999999998   677888887431  


Q ss_pred             CCCcceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCC
Q psy8629         308 DKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHP  387 (483)
Q Consensus       308 ~~~~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~  387 (483)
                                                                                ++               .....
T Consensus       154 ----------------------------------------------------------~~---------------~~~~~  160 (213)
T 3qrb_A          154 ----------------------------------------------------------DP---------------ELPHK  160 (213)
T ss_dssp             ----------------------------------------------------------ES---------------CCSCS
T ss_pred             ----------------------------------------------------------CC---------------CCCcC
Confidence                                                                      00               01245


Q ss_pred             CcEEEeCCCcEEEEc-ccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEe
Q psy8629         388 SWFQIDSKSGLITMK-SNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHD  439 (483)
Q Consensus       388 ~~F~id~~tG~i~~~-~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~d  439 (483)
                      +.|.|++.+|.|++. +.||||....|.|+|+|+|.|.|+++++++|+|+|.|
T Consensus       161 ~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~D  213 (213)
T 3qrb_A          161 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  213 (213)
T ss_dssp             CSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             CeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCceEEEEEEEEEEC
Confidence            689999999999987 7899999999999999999999999999999999987

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=3.2e-34  Score=263.92  Aligned_cols=191  Identities=29%  Similarity=0.407  Sum_probs=169.7

Q ss_pred             eEEEEeCCCCCC--eEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEE
Q psy8629         156 MSIEFPENTPRD--VKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVI  233 (483)
Q Consensus       156 ~~~~V~E~~~~g--t~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v  233 (483)
                      ..+.|+||.+.|  ..++++. .|+|.|.+   +|+|.+++..+.|.|++.   +|.    |.+.++||||....|.|+|
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~l~v   73 (203)
T 3ppe_A            5 NRMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEGESANTIFKVQGY---DGD----IYAFERLDREKKAEYELTA   73 (203)
T ss_dssp             SEEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEETTBTTTEEEETT---TTE----EEESSCCCTTTCCEEEEEE
T ss_pred             ccEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEecCCCCCeEEEECC---cCE----EEECccccccccceEEEEE
Confidence            358999999988  8889998 99998875   999998877789999984   566    7889999999999999999


Q ss_pred             EEEECCCC-CeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCC---CCccEEEEEEEecCCCC
Q psy8629         234 EALDGGSP-PLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA---GSNGEVEYSINRRQSDK  309 (483)
Q Consensus       234 ~a~D~g~p-~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~---~~~~~i~y~i~~~~~~~  309 (483)
                      .|+|+|.| ++++++.++|+|.|+|||+|.|.+..|.+.|+|+++.|+.|+++.|+|+|.   |.|+.++|+|       
T Consensus        74 ~a~D~g~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i-------  146 (203)
T 3ppe_A           74 HIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQI-------  146 (203)
T ss_dssp             EEEETTTTEECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTSSSTTCEEEEE-------
T ss_pred             EEEECCCCCcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcCCCcCCCCceEEEEEE-------
Confidence            99999987 688899999999999999999999999999999999999999999999994   4455555555       


Q ss_pred             CcceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCc
Q psy8629         310 DGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSW  389 (483)
Q Consensus       310 ~~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~  389 (483)
                                                                                            ..+    ..+
T Consensus       147 ----------------------------------------------------------------------~~~----~~~  152 (203)
T 3ppe_A          147 ----------------------------------------------------------------------IKG----NEY  152 (203)
T ss_dssp             ----------------------------------------------------------------------EES----TTT
T ss_pred             ----------------------------------------------------------------------eCC----CCc
Confidence                                                                                  321    237


Q ss_pred             EEEeCCCcEEEEc-ccCCCCCCCeeEEEEEEEEC-CcCCceEEEEEEEEEEe
Q psy8629         390 FQIDSKSGLITMK-SNVDCETDPVPKLTVIATDN-GVPALSSSATVLVTIHD  439 (483)
Q Consensus       390 F~id~~tG~i~~~-~~lD~E~~~~y~l~V~a~D~-g~p~~s~~~~v~I~V~d  439 (483)
                      |.|+ .+|.|++. ++||||....|.|+|+|+|. |.|+++++++|+|+|.|
T Consensus       153 F~I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~I~V~D  203 (203)
T 3ppe_A          153 FTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD  203 (203)
T ss_dssp             EEEC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEEEEEEC
T ss_pred             EEEe-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEEEEEEC
Confidence            9999 89999998 99999999999999999998 88889999999999987

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=1.5e-34  Score=268.50  Aligned_cols=196  Identities=25%  Similarity=0.327  Sum_probs=170.4

Q ss_pred             EEEEeCCCC--CCeEEEEEEccCCC-CCCCCEEEEecCC-CCCcccEEEeCCccEEEeCccCCccCCceeeEEEEecCCc
Q psy8629          21 DLEISEGVP--VGTRVGFIGDGFVG-DSGPPYLIVPVPG-SAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGE   96 (483)
Q Consensus        21 ~~~v~En~~--~gt~V~~v~a~d~d-~~~~~y~i~~~~~-~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d~~   96 (483)
                      .++|+||++  .|+.|+++.| |.| +..+.|+|..... ....++|.|++.||.|++.++||||....|.|.+.|.|++
T Consensus         6 ~~~V~En~~~~~~~~v~~v~a-D~d~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~   84 (213)
T 3qrb_A            6 AISCPENEKGEFPKNLVQIKS-NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN   84 (213)
T ss_dssp             EEEEETTCCSSSSEEEEECCC-GGGGTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred             CEEEeCCCCCCCCcEEEEEEE-CCCCCceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEeCC
Confidence            789999999  7899999999 765 5678999986422 2234589999999999999999999999999999988764


Q ss_pred             ceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEE
Q psy8629          97 NVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAK  176 (483)
Q Consensus        97 ~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~  176 (483)
                      ..                               ....++.|.|+|.|+|||+|.|....|.+.|+|++++|+.|+++.|+
T Consensus        85 ~~-------------------------------~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~  133 (213)
T 3qrb_A           85 GE-------------------------------AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSAT  133 (213)
T ss_dssp             SC-------------------------------BCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEE
T ss_pred             CC-------------------------------cccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEE
Confidence            21                               11236889999999999999999999999999999999999999999


Q ss_pred             eCCCC---CCceEEEEEEeCC----CCCceEEecccCCCceEEEEEEec-cCCCCCCCCEEEEEEEEEECCCCCeeeEEE
Q psy8629         177 DRDLG---IYNTQRYNIVSGN----TNNAFRLSSHREKDGVLYLDLQIN-GVLDRETIPEYSLVIEALDGGSPPLRGSMI  248 (483)
Q Consensus       177 D~D~~---~~~~~~y~l~~~~----~~~~F~i~~~~~~~g~~~~~l~~~-~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~  248 (483)
                      |+|.+   .|+.++|+|.+++    ..+.|.|++.   +|.    |.+. ++||||....|.|.|+|+|+|.|+++++++
T Consensus       134 D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~---tG~----i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t~~  206 (213)
T 3qrb_A          134 DADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRD---TGV----ISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAK  206 (213)
T ss_dssp             CCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTT---TCE----EEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEE
T ss_pred             eCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECC---CcE----EEEccCCCCCccCceEEEEEEEEeCCCCCceEEEE
Confidence            99998   8899999998764    3468999984   566    5665 799999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy8629         249 VNVTIQD  255 (483)
Q Consensus       249 v~I~V~d  255 (483)
                      |+|+|+|
T Consensus       207 v~I~V~D  213 (213)
T 3qrb_A          207 AVITVKD  213 (213)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999987

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=6.8e-34  Score=264.99  Aligned_cols=196  Identities=28%  Similarity=0.343  Sum_probs=170.0

Q ss_pred             EEEEeCCCCCC--eEEEEEEccCCCCCCCCEEEEecC-CCCCcccEEEeCCccEEEeCccCCccCCceeeEEEEecCCcc
Q psy8629          21 DLEISEGVPVG--TRVGFIGDGFVGDSGPPYLIVPVP-GSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGEN   97 (483)
Q Consensus        21 ~~~v~En~~~g--t~V~~v~a~d~d~~~~~y~i~~~~-~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d~~~   97 (483)
                      .++|+||.++|  +.|+++.|+|.|. .++|+|.... ...+.+.|.|++.||+|++.++||||....|.|.+.|.|++.
T Consensus         7 ~~~V~En~~~g~~~~v~~v~a~D~d~-~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~   85 (218)
T 3k5r_A            7 PILIPENQRQPFPRDVGKVVDSDRPE-GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASG   85 (218)
T ss_dssp             CEEEETTCCSSCCEEEEECBCTTCCT-TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECSSS
T ss_pred             cEEEecCCCCCCCEEEEEEEecCCCc-eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEECCC
Confidence            68999999998  9999999999876 7899998532 223346899999999999999999999999999999988653


Q ss_pred             eeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEe
Q psy8629          98 VRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKD  177 (483)
Q Consensus        98 ~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D  177 (483)
                      ...                               ..++.|.|+|.|+|||+|.|....|.+.|+|++++|+.|+++.|+|
T Consensus        86 ~~~-------------------------------~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D  134 (218)
T 3k5r_A           86 KTL-------------------------------EGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFD  134 (218)
T ss_dssp             CEE-------------------------------EEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCSC
T ss_pred             Cce-------------------------------eeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEEEEe
Confidence            110                               0257899999999999999999999999999999999999999999


Q ss_pred             CCC--CCCceEEEEEEeCCCC----CceEEecccCCCceEEEEEEec---cCCCCCC--CCEEEEEEEEEECC--CCCee
Q psy8629         178 RDL--GIYNTQRYNIVSGNTN----NAFRLSSHREKDGVLYLDLQIN---GVLDRET--IPEYSLVIEALDGG--SPPLR  244 (483)
Q Consensus       178 ~D~--~~~~~~~y~l~~~~~~----~~F~i~~~~~~~g~~~~~l~~~---~~LD~E~--~~~~~l~v~a~D~g--~p~~~  244 (483)
                      +|.  +.|+.++|+|.++++.    +.|.|++   .+|.    |.+.   ++||||.  .+.|.|.|+|+|+|  .|+++
T Consensus       135 ~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~---~tG~----i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~~s  207 (218)
T 3k5r_A          135 ADDPATDNALLRYNIRQQTPDKPSPNMFYIDP---EKGD----IVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLT  207 (218)
T ss_dssp             SSSSCGGGGCEEEEEEEEESCCSCSCSEEECT---TTCE----EEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTTCE
T ss_pred             CCCCCCCCcEEEEEEecCCCCCCcCCEEEEEC---CccE----EEEeccCCCCCccccCCCeEEEEEEEEECCCCCCCee
Confidence            999  6799999999986543    6799998   4566    4444   7999999  77999999999999  88999


Q ss_pred             eEEEEEEEEEe
Q psy8629         245 GSMIVNVTIQD  255 (483)
Q Consensus       245 ~~~~v~I~V~d  255 (483)
                      ++++|+|+|.|
T Consensus       208 st~~v~I~V~D  218 (218)
T 3k5r_A          208 GTATATIVIDD  218 (218)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            99999999987

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=4.7e-34  Score=266.04  Aligned_cols=197  Identities=30%  Similarity=0.487  Sum_probs=173.1

Q ss_pred             EEEEeCCCCCC--eEEEEEEEEeCCCCCCceEEEEEEeC----CCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEE
Q psy8629         157 SIEFPENTPRD--VKRTLNAAKDRDLGIYNTQRYNIVSG----NTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYS  230 (483)
Q Consensus       157 ~~~V~E~~~~g--t~v~~v~a~D~D~~~~~~~~y~l~~~----~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~  230 (483)
                      .+.|+||.+.|  +.++++.|.|+|.    .++|+|.++    ++.+.|.|++.   +|.    |.+.++||||....|.
T Consensus         7 ~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~   75 (218)
T 3k5r_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINEN---TGS----VSVTRTLDRETIATYQ   75 (218)
T ss_dssp             CEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTT---TCE----EEECSCCCTTTCSEEE
T ss_pred             cEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCC---ceE----EEECCcCCcccCCEEE
Confidence            58999999998  8899999998875    689999863    34589999984   566    7888999999999999


Q ss_pred             EEEEEEECCCCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCC--CCccEEEEEEEecCCC
Q psy8629         231 LVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA--GSNGEVEYSINRRQSD  308 (483)
Q Consensus       231 l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~--~~~~~i~y~i~~~~~~  308 (483)
                      |+|.|+|+|+|++++++.|+|+|.|+|||+|.|.+..|.+.|+|+++.|+.|+++.|+|+|.  |.|+.++|+|....  
T Consensus        76 l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~--  153 (218)
T 3k5r_A           76 LYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQT--  153 (218)
T ss_dssp             EEEEEECSSSCEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCSCSSSSCGGGGCEEEEEEEEE--
T ss_pred             EEEEEEECCCCceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCC--
Confidence            99999999999999999999999999999999999999999999999999999999999998  67888888885310  


Q ss_pred             CCcceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCC
Q psy8629         309 KDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPS  388 (483)
Q Consensus       309 ~~~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~  388 (483)
                                                                                +               .....+
T Consensus       154 ----------------------------------------------------------~---------------~~~~~~  160 (218)
T 3k5r_A          154 ----------------------------------------------------------P---------------DKPSPN  160 (218)
T ss_dssp             ----------------------------------------------------------S---------------CCSCSC
T ss_pred             ----------------------------------------------------------C---------------CCCcCC
Confidence                                                                      0               011246


Q ss_pred             cEEEeCCCcEEEEc---ccCCCCC--CCeeEEEEEEEECC--cCCceEEEEEEEEEEe
Q psy8629         389 WFQIDSKSGLITMK---SNVDCET--DPVPKLTVIATDNG--VPALSSSATVLVTIHD  439 (483)
Q Consensus       389 ~F~id~~tG~i~~~---~~lD~E~--~~~y~l~V~a~D~g--~p~~s~~~~v~I~V~d  439 (483)
                      +|.|++.+|.|++.   +.||||.  .+.|.|+|+|+|.|  .|+++++++|+|+|.|
T Consensus       161 ~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~~sst~~v~I~V~D  218 (218)
T 3k5r_A          161 MFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD  218 (218)
T ss_dssp             SEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTTCEEEEEEEEEEEC
T ss_pred             EEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCCCeeEEEEEEEEEEC
Confidence            79999999999877   6999999  77999999999999  8899999999999987

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=5.7e-35  Score=269.94  Aligned_cols=193  Identities=33%  Similarity=0.468  Sum_probs=163.5

Q ss_pred             EEEEeCCCCCC--eEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEE
Q psy8629         157 SIEFPENTPRD--VKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIE  234 (483)
Q Consensus       157 ~~~V~E~~~~g--t~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~  234 (483)
                      .+.|+|+.+.+  +.++++ |+|+|.| ++.++|+|.+++....|.|++.   +|.    |.+.++||||....|.|+|.
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~l~v~   76 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSGDGAGDLFIINEN---TGD----IQATKRLDREEKPVYILRAQ   76 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCSSSBTTTEEECTT---TCE----EEECSCCCGGGCCEEEC---
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEECCCCCCeEEEECC---ceE----EEECCCcCcccCCEEEEEEE
Confidence            47899998855  588888 8999998 6789999987666679999984   566    78889999999999999999


Q ss_pred             EEECC-CCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCC---CCccEEEEEEEecCCCCC
Q psy8629         235 ALDGG-SPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA---GSNGEVEYSINRRQSDKD  310 (483)
Q Consensus       235 a~D~g-~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~---~~~~~i~y~i~~~~~~~~  310 (483)
                      |+|++ .|++++++.++|+|.|+|||+|.|.+..|.+.|+|+++.|+.|+++.|+|+|.   |.|+.++|+|        
T Consensus        77 a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i--------  148 (207)
T 3lnd_A           77 AVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSI--------  148 (207)
T ss_dssp             -CBSSSCCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEECSSCTTSSSTTCCEEEE--------
T ss_pred             EEECCCCCccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCCCcEEEEEE--------
Confidence            99987 57889999999999999999999999999999999999999999999999997   5555555555        


Q ss_pred             cceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcE
Q psy8629         311 GLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWF  390 (483)
Q Consensus       311 ~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F  390 (483)
                                                                                           ..    ...+|
T Consensus       149 ---------------------------------------------------------------------~~----~~~~F  155 (207)
T 3lnd_A          149 ---------------------------------------------------------------------LQ----GQPYF  155 (207)
T ss_dssp             ---------------------------------------------------------------------EE----SGGGE
T ss_pred             ---------------------------------------------------------------------cC----CCCCE
Confidence                                                                                 31    12378


Q ss_pred             EEeCCCcEEEEc-ccCCCCCCCeeEEEEEEEECCcC--CceEEEEEEEEEEe
Q psy8629         391 QIDSKSGLITMK-SNVDCETDPVPKLTVIATDNGVP--ALSSSATVLVTIHD  439 (483)
Q Consensus       391 ~id~~tG~i~~~-~~lD~E~~~~y~l~V~a~D~g~p--~~s~~~~v~I~V~d  439 (483)
                      .|++.+|.|++. +.||||....|.|+|+|+|.|.|  +++++++|+|+|.|
T Consensus       156 ~Id~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~I~V~D  207 (207)
T 3lnd_A          156 SVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD  207 (207)
T ss_dssp             EECTTTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEEEEEEEC
T ss_pred             EEcCCCcEEEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEEEEEEeC
Confidence            899899999998 89999999999999999999877  79999999999987

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=4.2e-34  Score=265.36  Aligned_cols=196  Identities=23%  Similarity=0.301  Sum_probs=167.4

Q ss_pred             EEEEeCCCCCCeEEEEEEccCCC---CCCCCEEEEecCC-CCCcccEEEeCCccEEEeCccCCccCCceeeEEEEecCCc
Q psy8629          21 DLEISEGVPVGTRVGFIGDGFVG---DSGPPYLIVPVPG-SAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGE   96 (483)
Q Consensus        21 ~~~v~En~~~gt~V~~v~a~d~d---~~~~~y~i~~~~~-~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d~~   96 (483)
                      .++|+||++ |+.++++.+.|.|   +..++|+|..... ......|.|++.||.|+++++||||....|.|.+.|.|++
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g   84 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   84 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECC
Confidence            678999999 8888888776644   5568999985421 1234689999999999999999999999999999998865


Q ss_pred             ceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEE
Q psy8629          97 NVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAK  176 (483)
Q Consensus        97 ~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~  176 (483)
                      ...                               ...++.|.|+|.|+|||+|.|....|.+.|+|++++|+.|+++.|+
T Consensus        85 ~~~-------------------------------~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~  133 (215)
T 2qvi_A           85 GNQ-------------------------------VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI  133 (215)
T ss_dssp             TCC-------------------------------CEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCB
T ss_pred             CCc-------------------------------eeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEE
Confidence            310                               0125789999999999999999999999999999999999999999


Q ss_pred             eCCC--CCCceEEEEEEeCC----CCCceEEecccCCCceEEEEEEe-ccCCCCCCCCEEEEEEEEEECCCC---CeeeE
Q psy8629         177 DRDL--GIYNTQRYNIVSGN----TNNAFRLSSHREKDGVLYLDLQI-NGVLDRETIPEYSLVIEALDGGSP---PLRGS  246 (483)
Q Consensus       177 D~D~--~~~~~~~y~l~~~~----~~~~F~i~~~~~~~g~~~~~l~~-~~~LD~E~~~~~~l~v~a~D~g~p---~~~~~  246 (483)
                      |+|.  |.|+.++|+|.+++    ....|.|++.   +|.    |.+ .++||||....|.|.|+|+|+|+|   +++++
T Consensus       134 D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~---tG~----i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t  206 (215)
T 2qvi_A          134 DADDPNALNGMLRYRILSQAPSTPSPNMFTINNE---TGD----IITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNT  206 (215)
T ss_dssp             CSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTT---TCE----EEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCE
T ss_pred             eCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCC---CcE----EEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceE
Confidence            9998  78999999999876    3579999984   566    556 479999999999999999999887   79999


Q ss_pred             EEEEEEEEe
Q psy8629         247 MIVNVTIQD  255 (483)
Q Consensus       247 ~~v~I~V~d  255 (483)
                      ++|+|+|+|
T Consensus       207 ~~v~I~V~D  215 (215)
T 2qvi_A          207 ATAVITVTD  215 (215)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEEC
Confidence            999999986

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=3.2e-33  Score=257.19  Aligned_cols=191  Identities=27%  Similarity=0.400  Sum_probs=166.4

Q ss_pred             EEEEeCCCCCC--eEEEEEEccCCCCCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCceeeEEEEecCCcce
Q psy8629          21 DLEISEGVPVG--TRVGFIGDGFVGDSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGENV   98 (483)
Q Consensus        21 ~~~v~En~~~g--t~V~~v~a~d~d~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d~~~~   98 (483)
                      .++|+||.+.|  +.|+++. .|.|....+|+|...   +...+|.|++.||.|+++++||||....|.|.+.|.|++..
T Consensus         6 ~~~V~En~~~~~~~~v~~v~-~D~D~g~~~Y~i~~~---~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~   81 (203)
T 3ppe_A            6 RMHIREEIDSPLPHHVGKLT-SSVGNKNAMYIIEGE---SANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNN   81 (203)
T ss_dssp             EEEEETTCCSSSCEEEEECC-BCCCCTTEEEEEEET---TBTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTTT
T ss_pred             cEEEEccCCCCCCEEEEEEE-ecCCCCCcEEEEecC---CCCCeEEEECCcCEEEECccccccccceEEEEEEEEECCCC
Confidence            58999999998  9999998 887633339999854   33458999999999999999999999999999999887531


Q ss_pred             eEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeC
Q psy8629          99 RVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDR  178 (483)
Q Consensus        99 ~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~  178 (483)
                      .                              ....++.+.|+|.|+|||+|.|....|.+.|+|++++|+.|+++.|+|+
T Consensus        82 ~------------------------------~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~  131 (203)
T 3ppe_A           82 R------------------------------SLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDA  131 (203)
T ss_dssp             E------------------------------ECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECC
T ss_pred             C------------------------------cccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcC
Confidence            0                              0123678999999999999999999999999999999999999999999


Q ss_pred             C---CCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEec-cCCCCCCCCEEEEEEEEEEC-CCCCeeeEEEEEEEE
Q psy8629         179 D---LGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQIN-GVLDRETIPEYSLVIEALDG-GSPPLRGSMIVNVTI  253 (483)
Q Consensus       179 D---~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~-~~LD~E~~~~~~l~v~a~D~-g~p~~~~~~~v~I~V  253 (483)
                      |   .|.|+.++|+|.+++  ..|.|+ .   +|.    |.+. ++||||....|.|.|+|+|+ |.|+++++++|+|+|
T Consensus       132 D~~~~g~n~~i~Y~i~~~~--~~F~I~-~---tG~----i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~I~V  201 (203)
T 3ppe_A          132 DDPTVAGHATVTYQIIKGN--EYFTVD-D---SGV----IFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRL  201 (203)
T ss_dssp             SCTTSSSTTCEEEEEEEST--TTEEEC-T---TSE----EEESCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEEEEE
T ss_pred             CCcCCCCceEEEEEEeCCC--CcEEEe-C---CeE----EEECCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEEEEE
Confidence            9   478999999999875  499999 4   466    7777 99999999999999999998 778899999999999


Q ss_pred             Ee
Q psy8629         254 QD  255 (483)
Q Consensus       254 ~d  255 (483)
                      +|
T Consensus       202 ~D  203 (203)
T 3ppe_A          202 TD  203 (203)
T ss_dssp             EC
T ss_pred             EC
Confidence            87

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=1.9e-33  Score=259.71  Aligned_cols=192  Identities=26%  Similarity=0.361  Sum_probs=160.1

Q ss_pred             EEEEeCCCCCC--eEEEEEEccCCC--CCCCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCceeeEEEEecCCc
Q psy8629          21 DLEISEGVPVG--TRVGFIGDGFVG--DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRSSYSLVAIPLSGE   96 (483)
Q Consensus        21 ~~~v~En~~~g--t~V~~v~a~d~d--~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~d~~   96 (483)
                      .++|+||.++|  +.|+++ |+|+|  +..+.|+|...   +...+|.|++.+|+|+++++||||....|.|.+.|.|++
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g~~~i~Y~l~~~---~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~   81 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRGDGSLKYILSGD---GAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRR   81 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCSSTTBCCCCCSS---SBTTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSS
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCCCceEEEEEECC---CCCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECC
Confidence            57899999955  589999 89977  45688998743   334589999999999999999999999999999998864


Q ss_pred             ceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEE
Q psy8629          97 NVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAK  176 (483)
Q Consensus        97 ~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~  176 (483)
                      ..                              +....++.+.|+|.|+|||+|.|....|.+.|+|++++|+.|+++.|+
T Consensus        82 ~~------------------------------~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~  131 (207)
T 3lnd_A           82 TG------------------------------RPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTAT  131 (207)
T ss_dssp             SC------------------------------CCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEE
T ss_pred             CC------------------------------CccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEE
Confidence            20                              011235678999999999999999999999999999999999999999


Q ss_pred             eCCC---CCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEec-cCCCCCCCCEEEEEEEEEECCCC--CeeeEEEEE
Q psy8629         177 DRDL---GIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQIN-GVLDRETIPEYSLVIEALDGGSP--PLRGSMIVN  250 (483)
Q Consensus       177 D~D~---~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~-~~LD~E~~~~~~l~v~a~D~g~p--~~~~~~~v~  250 (483)
                      |+|.   |.|+.++|+|.+++  ..|.|++.   +|.    |.+. ++||||....|.|.|+|+|+|.|  +++++++|+
T Consensus       132 D~D~~~~g~n~~i~Y~i~~~~--~~F~Id~~---tG~----i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~  202 (207)
T 3lnd_A          132 DADDPTYGNSAKVVYSILQGQ--PYFSVESE---TGI----IKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVN  202 (207)
T ss_dssp             CSSCTTSSSTTCCEEEEEESG--GGEEECTT---TCE----EEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEEE
T ss_pred             eCCCCCCCCCcEEEEEEcCCC--CCEEEcCC---CcE----EEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEEE
Confidence            9998   78899999999864  48999984   566    6677 89999999999999999999876  799999999


Q ss_pred             EEEEe
Q psy8629         251 VTIQD  255 (483)
Q Consensus       251 I~V~d  255 (483)
                      |+|.|
T Consensus       203 I~V~D  207 (207)
T 3lnd_A          203 ITLTD  207 (207)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99987

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.97  E-value=7.5e-30  Score=240.17  Aligned_cols=206  Identities=23%  Similarity=0.297  Sum_probs=162.0

Q ss_pred             CceEEEEeCCCCCCeEEEEE-EEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEE
Q psy8629         154 PFMSIEFPENTPRDVKRTLN-AAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLV  232 (483)
Q Consensus       154 ~~~~~~V~E~~~~gt~v~~v-~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~  232 (483)
                      +.+.+.|+|+++.|+.+..+ .+.|.|.+.++.++|+|.++ ....|.|++.   +|.+++ ....+.||||....|.+.
T Consensus        20 P~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~-~~~~f~id~~---tg~~~l-~~t~~~LDrE~~~~~~~~   94 (242)
T 4apx_B           20 PATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDN-VDYWVLLDPV---KQMLFL-NSTGRVLDRDPPMNIHSI   94 (242)
T ss_dssp             SSEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESC-GGGCEEEETT---TTEEEE-CCTTSCCCCSTTTCCCEE
T ss_pred             CeEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecC-CCceEEECCC---CCEEEE-EecCCceeccCCCceEEE
Confidence            35778999999999998765 44555667888999999754 3568999984   566442 223578999998766655


Q ss_pred             EEEEECCC--CCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEE-----EEEEeCCCCCccEEEEEEEec
Q psy8629         233 IEALDGGS--PPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQ-----VFATDADAGSNGEVEYSINRR  305 (483)
Q Consensus       233 v~a~D~g~--p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~-----v~a~D~D~~~~~~i~y~i~~~  305 (483)
                      +.+.+++.  ++..+.+.|+|.|.|+|||+|.|.+..|.+.|+||+++|+.|++     +.|+|+|.|.|+.|+|+|...
T Consensus        95 ~~~v~~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~  174 (242)
T 4apx_B           95 VVQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYN  174 (242)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECC
T ss_pred             EEEEEeECCCCCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEecC
Confidence            55444322  23567788999999999999999999999999999999999986     779999988888888888531


Q ss_pred             CCCCCcceEEeCCccEEEEcccCCCcccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCC
Q psy8629         306 QSDKDGLFNIDSKSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDD  385 (483)
Q Consensus       306 ~~~~~~~F~Id~~tG~l~~~~~LD~E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~  385 (483)
                        +.                                                                         .+.
T Consensus       175 --~~-------------------------------------------------------------------------~~~  179 (242)
T 4apx_B          175 --PE-------------------------------------------------------------------------DPT  179 (242)
T ss_dssp             --TT-------------------------------------------------------------------------STT
T ss_pred             --CC-------------------------------------------------------------------------Ccc
Confidence              00                                                                         011


Q ss_pred             CCCcEEEeC-CCcEEEEcccCCCCCCCeeEEEEEEEECCcCC---ceEEEEEEEEEEe
Q psy8629         386 HPSWFQIDS-KSGLITMKSNVDCETDPVPKLTVIATDNGVPA---LSSSATVLVTIHD  439 (483)
Q Consensus       386 ~~~~F~id~-~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~---~s~~~~v~I~V~d  439 (483)
                      ....|.|++ .+|.|++.+.||||....|.|+|+|+|+|.|+   ++++++|+|.|.-
T Consensus       180 ~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          180 SNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDLEH  237 (242)
T ss_dssp             HHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEECCSSGGGCCEEEEEEEEEEEC
T ss_pred             cccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEECCcCchhcccCCceEEEEEee
Confidence            234688884 58999999999999999999999999999884   7888999998874

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.97  E-value=1e-28  Score=232.38  Aligned_cols=196  Identities=20%  Similarity=0.157  Sum_probs=158.6

Q ss_pred             ceEEEEEeCCCCCCeEEEEEEccC---CC-CCCCCEEEEecCCCCCcccEEEeCCccEEEeC---ccCCccCCceeeEEE
Q psy8629          18 HLRDLEISEGVPVGTRVGFIGDGF---VG-DSGPPYLIVPVPGSAVDTDLSIEQNTGEIRTK---VPLDRETRSSYSLVA   90 (483)
Q Consensus        18 ~~~~~~v~En~~~gt~V~~v~a~d---~d-~~~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~---~~LD~E~~~~y~l~v   90 (483)
                      +.|.++|+|++|+|++|..+.+.+   .+ +..+.|+|...    ...+|.|++.+|.+++.   +.||||....|.+.+
T Consensus        20 P~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~----~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~   95 (242)
T 4apx_B           20 PATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDN----VDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIV   95 (242)
T ss_dssp             SSEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESC----GGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEE
T ss_pred             CeEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecC----CCceEEECCCCCEEEEEecCCceeccCCCceEEEE
Confidence            468899999999999998755544   23 33467888742    34589999999999875   579999988877665


Q ss_pred             EecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCC-CC--eEEEEEEEecCCCCCCccCCCceEEEEeCCCCCC
Q psy8629          91 IPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLS-GE--NVRVVVRVIDENDNAPTFPSPFMSIEFPENTPRD  167 (483)
Q Consensus        91 ~a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~-~~--~~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~g  167 (483)
                      .+.++.                                ... +.  .+.|.|.|.|+|||+|.|.+..|.+.|+|++++|
T Consensus        96 ~~v~~~--------------------------------~~~~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~G  143 (242)
T 4apx_B           96 VQVQCV--------------------------------NKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVG  143 (242)
T ss_dssp             EEEEEE--------------------------------ETTTCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTT
T ss_pred             EEEEeE--------------------------------CCCCCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCC
Confidence            443321                                111 11  4579999999999999999999999999999999


Q ss_pred             eEEEE-----EEEEeCCCCCCceEEEEEEeCCCC----CceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEEEEEEC
Q psy8629         168 VKRTL-----NAAKDRDLGIYNTQRYNIVSGNTN----NAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDG  238 (483)
Q Consensus       168 t~v~~-----v~a~D~D~~~~~~~~y~l~~~~~~----~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v~a~D~  238 (483)
                      +.|.+     +.|+|+|.|.|+.++|+|..++..    ..|.|+..  .+|.    |.+.++||||....|.|.|+|+|+
T Consensus       144 t~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~--~tG~----i~~~~~LD~E~~~~y~l~V~A~D~  217 (242)
T 4apx_B          144 TTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLM--LTGN----VVLRKRLNYEDKTRYYVIIQANDR  217 (242)
T ss_dssp             CEEECTTTTTTSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSST--TTCC----EEECSCCCTTTCCEEEEEEEEEEC
T ss_pred             CEEEEeeecccccccCCCCcCCceEEEEecCCCCcccccceEEcCC--CceE----EEECCcCChhhCCEEEEEEEEEEC
Confidence            99976     789999999999999999986543    36999853  3566    778999999999999999999999


Q ss_pred             CCCC---eeeEEEEEEEEEe
Q psy8629         239 GSPP---LRGSMIVNVTIQD  255 (483)
Q Consensus       239 g~p~---~~~~~~v~I~V~d  255 (483)
                      |.|+   +++.+.|+|+|..
T Consensus       218 G~~~~~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          218 AQNLNERRTTTTTLTVDLEH  237 (242)
T ss_dssp             CSSGGGCCEEEEEEEEEEEC
T ss_pred             CcCchhcccCCceEEEEEee
Confidence            9884   7788899998874

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.94  E-value=3.3e-27  Score=197.97  Aligned_cols=116  Identities=27%  Similarity=0.401  Sum_probs=107.7

Q ss_pred             EEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCC--CCceEEecccCCCceEEEEEE
Q psy8629         139 VRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNT--NNAFRLSSHREKDGVLYLDLQ  216 (483)
Q Consensus       139 I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~--~~~F~i~~~~~~~g~~~~~l~  216 (483)
                      ++|.|+|||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.|.|+.++|+|.++..  ...|.|++.   +|.    |.
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~---tG~----I~   74 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDET---SGW----LS   74 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTT---TCE----EE
T ss_pred             CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCC---ceE----EE
Confidence            468999999999999999999999999999999999999999999999999987543  358999984   566    77


Q ss_pred             eccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEecCCCCC
Q psy8629         217 INGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQP  261 (483)
Q Consensus       217 ~~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P  261 (483)
                      +.++||||....|.|.|+|+|+|.|++++++.|+|+|.|+|||+|
T Consensus        75 ~~~~LD~E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           75 VLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             ECSCCCTTTCSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred             ECccCCcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence            899999999999999999999999999999999999999999998

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.93  E-value=3e-26  Score=192.15  Aligned_cols=118  Identities=36%  Similarity=0.548  Sum_probs=106.0

Q ss_pred             EEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCC
Q psy8629         251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDF  330 (483)
Q Consensus       251 I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~  330 (483)
                      ++|.|+|||+|.|.+..|.++|+|++++|+.|+++.|+|+|.|.++.++|+|...                         
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~-------------------------   56 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAA-------------------------   56 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSC-------------------------
T ss_pred             CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecC-------------------------
Confidence            4689999999999999999999999999999999999999998888888887320                         


Q ss_pred             cccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCC
Q psy8629         331 ETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD  410 (483)
Q Consensus       331 E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~  410 (483)
                                                                          ......+|.|++.+|.|++.+.||||..
T Consensus        57 ----------------------------------------------------~~~~~~~F~Id~~tG~I~~~~~LD~E~~   84 (119)
T 2yst_A           57 ----------------------------------------------------TESVRRLLRLDETSGWLSVLHRIDREEV   84 (119)
T ss_dssp             ----------------------------------------------------CTTHHHHEEECTTTCEEEECSCCCTTTC
T ss_pred             ----------------------------------------------------CCccccEEEEeCCceEEEECccCCcccC
Confidence                                                                0112357999999999999999999999


Q ss_pred             CeeEEEEEEEECCcCCceEEEEEEEEEEecCCCCC
Q psy8629         411 PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEP  445 (483)
Q Consensus       411 ~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P  445 (483)
                      ..|.|+|+|+|+|.|+++++++|+|+|.|+|||+|
T Consensus        85 ~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           85 NQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             SEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred             CEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence            99999999999999999999999999999999998

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=9.1e-25  Score=181.44  Aligned_cols=110  Identities=29%  Similarity=0.431  Sum_probs=100.3

Q ss_pred             EEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeC---CCCCceEEecccCCCceEEEEE
Q psy8629         139 VRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSG---NTNNAFRLSSHREKDGVLYLDL  215 (483)
Q Consensus       139 I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~---~~~~~F~i~~~~~~~g~~~~~l  215 (483)
                      |+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.|.|+.++|+|.++   +....|.|++.   +|.    |
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~---tG~----I   74 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNT---TGL----I   74 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTT---TCE----E
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCC---eeE----E
Confidence            5789999999999999999999999999999999999999999999999999763   23568999984   566    7


Q ss_pred             EeccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEecC
Q psy8629         216 QINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVN  257 (483)
Q Consensus       216 ~~~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dvN  257 (483)
                      .+.++||||....|.|.|+|+|+|.|+  ++++|+|+|+|+|
T Consensus        75 ~~~~~LD~E~~~~y~l~V~A~D~g~~~--~~~~v~I~V~DvN  114 (114)
T 2ee0_A           75 TVQRSLDREETAIHKVTVLASDGSSTP--ARATVTINVTDVN  114 (114)
T ss_dssp             EECSCCCTTTCSEEEEEEEEESSSSSC--EEEEEEEEEECCC
T ss_pred             EECccCCcccCcEEEEEEEEEECCCCc--eEEEEEEEEEECC
Confidence            788999999999999999999999876  7889999999997

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=1.8e-23  Score=173.52  Aligned_cols=113  Identities=37%  Similarity=0.594  Sum_probs=100.1

Q ss_pred             EEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCC
Q psy8629         251 VTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDF  330 (483)
Q Consensus       251 I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~  330 (483)
                      |+|.|+|||+|.|.+..|.++|+|++++|+.|+++.|+|+|.|.++.++|+|...  .                      
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~--~----------------------   57 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQ--V----------------------   57 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSS--C----------------------
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccC--C----------------------
Confidence            5689999999999999999999999999999999999999998888888888420  0                      


Q ss_pred             cccceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCC
Q psy8629         331 ETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD  410 (483)
Q Consensus       331 E~~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~  410 (483)
                                                                          +++...+|.|++.+|.|++.++||||..
T Consensus        58 ----------------------------------------------------~~~~~~~F~Id~~tG~I~~~~~LD~E~~   85 (114)
T 2ee0_A           58 ----------------------------------------------------APATKRLFALNNTTGLITVQRSLDREET   85 (114)
T ss_dssp             ----------------------------------------------------CHHHHHHEEECTTTCEEEECSCCCTTTC
T ss_pred             ----------------------------------------------------CCCccceEEEeCCeeEEEECccCCcccC
Confidence                                                                0123467999999999999999999999


Q ss_pred             CeeEEEEEEEECCcCCceEEEEEEEEEEecC
Q psy8629         411 PVPKLTVIATDNGVPALSSSATVLVTIHDVN  441 (483)
Q Consensus       411 ~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvN  441 (483)
                      ..|.|+|+|+|+|.|+  ++++|+|+|.|+|
T Consensus        86 ~~y~l~V~A~D~g~~~--~~~~v~I~V~DvN  114 (114)
T 2ee0_A           86 AIHKVTVLASDGSSTP--ARATVTINVTDVN  114 (114)
T ss_dssp             SEEEEEEEEESSSSSC--EEEEEEEEEECCC
T ss_pred             cEEEEEEEEEECCCCc--eEEEEEEEEEECC
Confidence            9999999999999876  7899999999998

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=5.2e-22  Score=166.93  Aligned_cols=114  Identities=19%  Similarity=0.275  Sum_probs=104.2

Q ss_pred             CCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeC----CCCCceEEecccCCCceEEEEEEecc
Q psy8629         144 ENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSG----NTNNAFRLSSHREKDGVLYLDLQING  219 (483)
Q Consensus       144 vND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~----~~~~~F~i~~~~~~~g~~~~~l~~~~  219 (483)
                      .+.+.|.|....|.+.+.|++++|+.|+++. .|+|.|.|+.++|+|.++    +....|.|++.   +|.    |.+.+
T Consensus         5 ~~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~---tG~----i~~~~   76 (123)
T 2yqg_A            5 SSGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKD---TGE----LNVTS   76 (123)
T ss_dssp             SSCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETT---TTE----EEECS
T ss_pred             ccccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCC---cCE----EEECc
Confidence            4688999999999999999999999999999 699999999999999976    24578999984   566    78899


Q ss_pred             CCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEecCCCCCeecC
Q psy8629         220 VLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQ  265 (483)
Q Consensus       220 ~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~  265 (483)
                      +||||..+.|.|+|.|+|+|.|++++++.|+|+|+|+|||+|.|.+
T Consensus        77 ~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           77 ILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             CCBTTTBSEEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCC
T ss_pred             ccCcccCceEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCC
Confidence            9999999999999999999999999999999999999999999975

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=2.3e-21  Score=163.03  Aligned_cols=118  Identities=19%  Similarity=0.268  Sum_probs=100.8

Q ss_pred             CCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCccccee
Q psy8629         257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVH  336 (483)
Q Consensus       257 Nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E~~~~~  336 (483)
                      +.+.|.|....|.+.+.|++++|+.|+++. +|+|.|.|+.|+|+|.....                             
T Consensus         6 ~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~-----------------------------   55 (123)
T 2yqg_A            6 SGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGI-----------------------------   55 (123)
T ss_dssp             SCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTT-----------------------------
T ss_pred             cccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCC-----------------------------
Confidence            578899998888888888889999999988 58888777778888743100                             


Q ss_pred             eeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEE
Q psy8629         337 DLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLT  416 (483)
Q Consensus       337 ~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~  416 (483)
                                                                    ..+....|.|++.+|.|++.++||||....|.|+
T Consensus        56 ----------------------------------------------~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~   89 (123)
T 2yqg_A           56 ----------------------------------------------TEPPFGIFVFNKDTGELNVTSILDREETPFFLLT   89 (123)
T ss_dssp             ----------------------------------------------TBSSCSSEEEETTTTEEEECSCCBTTTBSEEEEE
T ss_pred             ----------------------------------------------CCCcCCCEEEeCCcCEEEECcccCcccCceEEEE
Confidence                                                          0123467999999999999999999999999999


Q ss_pred             EEEEECCcCCceEEEEEEEEEEecCCCCCeecCC
Q psy8629         417 VIATDNGVPALSSSATVLVTIHDVNDNEPIFDQS  450 (483)
Q Consensus       417 V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~  450 (483)
                      |+|+|.|.|+++++++|.|.|.|+|||+|.|.++
T Consensus        90 V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~~  123 (123)
T 2yqg_A           90 GYALDARGNNVEKPLELRIKVLDINDNEPVFTQD  123 (123)
T ss_dssp             EEEECTTCCEEEEEECCEEEEECTTCCCCCCCCC
T ss_pred             EEEEECCCCceEEEEEEEEEEEEcCCCCCEeCCC
Confidence            9999999999999999999999999999999763

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.82  E-value=2.2e-20  Score=153.82  Aligned_cols=97  Identities=21%  Similarity=0.276  Sum_probs=78.3

Q ss_pred             eeeccCCCCeE--EEEEEEEeCCCCCCceEEEEEeeCC--CCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECC
Q psy8629         348 SFDEIAEPGTS--VFQISAFDQDEGINSVITYSLRENT--DDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNG  423 (483)
Q Consensus       348 ~v~E~~~~gt~--v~~v~a~D~D~~~~~~v~y~l~~~~--~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g  423 (483)
                      +|.||+++|+.  |+++   |.|.|.|+.++|+|....  ++..+.|.|++.+|.|++.++||||..+.|.|+|+|+|.|
T Consensus        10 ~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g   86 (110)
T 1ncg_A           10 NLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   86 (110)
T ss_dssp             EECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTT
T ss_pred             EEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEEECC
Confidence            57899999994  5555   677778999999998531  2457899999999999999999999999999999999999


Q ss_pred             cCCceEEEEEEEEEEecCCCCCee
Q psy8629         424 VPALSSSATVLVTIHDVNDNEPIF  447 (483)
Q Consensus       424 ~p~~s~~~~v~I~V~dvNd~~P~f  447 (483)
                      .|+++++++|.|+|.|+|||+|.|
T Consensus        87 ~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           87 GNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             SCBCSCCEEEEEEEC---------
T ss_pred             CCceeeEEEEEEEEEECCCCCCCC
Confidence            999999999999999999999987

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.80  E-value=1.2e-19  Score=149.32  Aligned_cols=99  Identities=23%  Similarity=0.355  Sum_probs=78.6

Q ss_pred             ceEEEEeCCCCCCeE--EEEEEEEeCCCCCCceEEEEEEeC----CCCCceEEecccCCCceEEEEEEeccCCCCCCCCE
Q psy8629         155 FMSIEFPENTPRDVK--RTLNAAKDRDLGIYNTQRYNIVSG----NTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPE  228 (483)
Q Consensus       155 ~~~~~V~E~~~~gt~--v~~v~a~D~D~~~~~~~~y~l~~~----~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~  228 (483)
                      .|.++|+||+++|+.  ++++   |.|.|.|+.++|+|.++    +..+.|.|++.   +|.    |.+.++||||..+.
T Consensus         6 ~~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~   75 (110)
T 1ncg_A            6 IPPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPI---SGQ----LSVTKPLDRELIAR   75 (110)
T ss_dssp             CCCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTT---TCE----EEECSCCCTTTCCE
T ss_pred             eeeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECC---CCE----EEECCcCCcccCCe
Confidence            367999999999995  5554   77888899999999863    34679999984   566    78899999999999


Q ss_pred             EEEEEEEEECCCCCeeeEEEEEEEEEecCCCCCee
Q psy8629         229 YSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIF  263 (483)
Q Consensus       229 ~~l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f  263 (483)
                      |.|.|.|+|+|.|++++++.|+|+|+|+|||+|.|
T Consensus        76 y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           76 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             EEEEEEEECTTSCBCSCCEEEEEEEC---------
T ss_pred             EEEEEEEEECCCCceeeEEEEEEEEEECCCCCCCC
Confidence            99999999999999999999999999999999987

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.77  E-value=5e-20  Score=154.88  Aligned_cols=110  Identities=23%  Similarity=0.179  Sum_probs=88.9

Q ss_pred             HhhhcCceEEEEEeCCCCCCeEEEEEEccCCCCC--CC---CEEEEecCCCCCcccEEEeCCccEEEeCccCCccCC---
Q psy8629          12 AVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDS--GP---PYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETR---   83 (483)
Q Consensus        12 ~~~~~~~~~~~~v~En~~~gt~V~~v~a~d~d~~--~~---~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~---   83 (483)
                      +|.+...+|.++|+||+++|+.|+++ |+|.|..  .+   .|+|.++   +...+|.||+.||.|+++++||||+.   
T Consensus         5 ~~~~~~~~~~~~V~E~~~~Gt~V~~v-a~D~d~~~~~i~~~~Y~i~~~---~~~~~F~Id~~tG~i~~~~~LDRE~~c~~   80 (125)
T 1wyj_A            5 SSGAGSATITYSVLEETDRGSLVGNL-AKDLGLSLRELITRGAQILSK---GNKQLLQLEQKSGNLLLKEKLDREELCGS   80 (125)
T ss_dssp             CCCCCCCCCCEEECSSCCTTCEEEES-TTTTTCCHHHHHHTTCEEECS---SSSCSEEECSSSSEEEESSCCCSTTTCTT
T ss_pred             EecccCceEEEEEECCCCCCCEEEEE-EecCCCCCCceeeEEEEEecC---CCCCeEEEECCccEEEECccccchhhccc
Confidence            34567788899999999999999999 9997743  23   8999864   23458999999999999999999999   


Q ss_pred             -ceeeEEEEecCCcceeEEEeecCcEEEEcccCCccccceEEEEEEeCCCCeEEEEEEEecCCCCCCccCCCceEEE
Q psy8629          84 -SSYSLVAIPLSGENVRVVSFYEPGEIRTKVPLDRETRSSYSLVAIPLSGENVRVVVRVIDENDNAPTFPSPFMSIE  159 (483)
Q Consensus        84 -~~y~l~v~a~d~~~~~~~~~~~~g~l~~~~~ld~e~~~~~~~~~~~~~~~~~~v~I~V~DvND~~P~f~~~~~~~~  159 (483)
                       ..|.|.+.|.++..                                  ...+.|.|+|+|+|||+|.|.+..|.++
T Consensus        81 ~~~y~l~v~a~~~~p----------------------------------~~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           81 TNPCILHFQVLLKSP----------------------------------VQFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             CSSCCBCCEEEETTT----------------------------------TEEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             CCcEEEEEEEEECCC----------------------------------CeEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence             88888776643210                                  0146789999999999999999988654

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.73  E-value=1.4e-17  Score=133.73  Aligned_cols=88  Identities=23%  Similarity=0.233  Sum_probs=80.3

Q ss_pred             eeeccCC--CCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECC-c
Q psy8629         348 SFDEIAE--PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNG-V  424 (483)
Q Consensus       348 ~v~E~~~--~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g-~  424 (483)
                      .|.||.+  .|+.|++|+ +|+|.| |+.++|+|..  ++..+.|.|++.+|.|++.++||||+.+.|.|+|+|+|.| .
T Consensus         9 ~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~--~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~~   84 (99)
T 1zvn_A            9 FVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSG--EGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTG   84 (99)
T ss_dssp             EEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEE--TTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTC
T ss_pred             EEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeC--CCCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCCC
Confidence            5789976  689999999 999999 9999999984  2344789999999999999999999999999999999999 4


Q ss_pred             CCceEEEEEEEEEEe
Q psy8629         425 PALSSSATVLVTIHD  439 (483)
Q Consensus       425 p~~s~~~~v~I~V~d  439 (483)
                      |+++++++|.|+|.|
T Consensus        85 p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           85 RPMEPESEFIIKIQD   99 (99)
T ss_dssp             CBSSCCEEEEEEEEC
T ss_pred             CCcceeEEEEEEEeC
Confidence            999999999999987

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.73  E-value=1.5e-17  Score=133.44  Aligned_cols=88  Identities=25%  Similarity=0.259  Sum_probs=78.2

Q ss_pred             eeeccCC--CCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECCc-
Q psy8629         348 SFDEIAE--PGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGV-  424 (483)
Q Consensus       348 ~v~E~~~--~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~-  424 (483)
                      .|.||.+  +|+.|+++. +|+|.| |+.++|+|..  ++..+.|.||+.+|.|++.++||||+++.|.|+|+|+|+|. 
T Consensus         8 ~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~--~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~~   83 (98)
T 1zxk_A            8 FVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSG--DGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETN   83 (98)
T ss_dssp             EECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEE--TTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTC
T ss_pred             EEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeC--CCCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCCC
Confidence            5789985  899999997 999999 9999999984  23446899999999999999999999999999999999997 


Q ss_pred             CCceEEEEEEEEEEe
Q psy8629         425 PALSSSATVLVTIHD  439 (483)
Q Consensus       425 p~~s~~~~v~I~V~d  439 (483)
                      |+++++++|.|.|.|
T Consensus        84 ~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           84 KPLEPPSEFIIKVQD   98 (98)
T ss_dssp             CBSSCCEEEEEEECC
T ss_pred             CCcceeEEEEEEEEC
Confidence            789999999999986

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.73  E-value=7.6e-19  Score=147.66  Aligned_cols=101  Identities=21%  Similarity=0.205  Sum_probs=87.3

Q ss_pred             eeeccCCCCeEEEEEEEEeCCCCCCceE---EEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCC----CeeEEEEEEE
Q psy8629         348 SFDEIAEPGTSVFQISAFDQDEGINSVI---TYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD----PVPKLTVIAT  420 (483)
Q Consensus       348 ~v~E~~~~gt~v~~v~a~D~D~~~~~~v---~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~----~~y~l~V~a~  420 (483)
                      .|.|+.++|+.|+++ |+|.|.+. +.+   +|+|..  ++..++|.||+.||.|++.++||||..    ..|.|+|.|.
T Consensus        16 ~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~--~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v~a~   91 (125)
T 1wyj_A           16 SVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILS--KGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVL   91 (125)
T ss_dssp             EECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEEC--SSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCCEEE
T ss_pred             EEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEec--CCCCCeEEEECCccEEEECccccchhhcccCCcEEEEEEEE
Confidence            578999999999999 99998753 344   899984  456689999999999999999999999    9999999999


Q ss_pred             ECCcCCceEEEEEEEEEEecCCCCCeecCCceEEE
Q psy8629         421 DNGVPALSSSATVLVTIHDVNDNEPIFDQSFYNVT  455 (483)
Q Consensus       421 D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~  455 (483)
                      +. .| + ..++|.|+|.|+|||+|.|.++.|..+
T Consensus        92 ~~-~p-~-~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           92 LK-SP-V-QFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             ET-TT-T-EEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             EC-CC-C-eEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence            84 33 3 488999999999999999999988654

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.71  E-value=6.3e-17  Score=129.96  Aligned_cols=91  Identities=22%  Similarity=0.253  Sum_probs=81.9

Q ss_pred             eEEEEeCCCC--CCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEE
Q psy8629         156 MSIEFPENTP--RDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVI  233 (483)
Q Consensus       156 ~~~~V~E~~~--~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v  233 (483)
                      +.+.|+||.+  .|+.|+++. +|+|.| |+.++|+|.+++..+.|.|++.   +|.    |.+.++||||+.+.|.|+|
T Consensus         6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~l~V   76 (99)
T 1zvn_A            6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDT---TGD----IHAIQRLDREERSQYTLRA   76 (99)
T ss_dssp             CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTT---TCE----EEECSCCCTTTCSEEEEEE
T ss_pred             cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCC---CCC----EEECeecCCccCCeEEEEE
Confidence            4689999976  689999999 999999 9999999988665678999984   566    7788999999999999999


Q ss_pred             EEEECC-CCCeeeEEEEEEEEEe
Q psy8629         234 EALDGG-SPPLRGSMIVNVTIQD  255 (483)
Q Consensus       234 ~a~D~g-~p~~~~~~~v~I~V~d  255 (483)
                      .|+|+| +|++++.+.|.|+|.|
T Consensus        77 ~A~D~G~~p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           77 QALDRRTGRPMEPESEFIIKIQD   99 (99)
T ss_dssp             EEEETTTCCBSSCCEEEEEEEEC
T ss_pred             EEEECCCCCCcceeEEEEEEEeC
Confidence            999999 5999999999999987

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.70  E-value=5e-17  Score=130.83  Aligned_cols=88  Identities=19%  Similarity=0.206  Sum_probs=80.8

Q ss_pred             eeeccCCC--CeEEEEEEEEeCCCCCCceEEEEEeeC--CCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECC
Q psy8629         348 SFDEIAEP--GTSVFQISAFDQDEGINSVITYSLREN--TDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNG  423 (483)
Q Consensus       348 ~v~E~~~~--gt~v~~v~a~D~D~~~~~~v~y~l~~~--~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g  423 (483)
                      .|.||.++  |+.|++|+|+|+|.    .++|+|...  .++..+.|.||+.+|.|++.++||||....|.|+|.|+|+|
T Consensus         8 ~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g   83 (99)
T 3k6d_A            8 SIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDEN   83 (99)
T ss_dssp             EEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTT
T ss_pred             EEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEEECC
Confidence            57899999  99999999999996    799999852  24556899999999999999999999999999999999999


Q ss_pred             cCCceEEEEEEEEEEe
Q psy8629         424 VPALSSSATVLVTIHD  439 (483)
Q Consensus       424 ~p~~s~~~~v~I~V~d  439 (483)
                      .|+++++++|.|+|.|
T Consensus        84 ~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           84 GKTIEGPVDLEILVID   99 (99)
T ss_dssp             CCEEEEEEEEEEEEEC
T ss_pred             CCceeeEEEEEEEEEC
Confidence            9999999999999987

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.70  E-value=9.2e-17  Score=128.84  Aligned_cols=91  Identities=22%  Similarity=0.274  Sum_probs=79.8

Q ss_pred             eEEEEeCCCC--CCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEE
Q psy8629         156 MSIEFPENTP--RDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVI  233 (483)
Q Consensus       156 ~~~~V~E~~~--~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v  233 (483)
                      +.+.|+||.+  .|+.|+++. +|+|.| |+.++|+|.+++..+.|.|++.   +|.    |.+.++||||+++.|.|+|
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~l~v   75 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDI---TGD----IHAIKRLDREEKAEYTLTA   75 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTT---TCE----EEECSCCCTTTCSEEEEEE
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECC---ccE----EEECccCCCcCCCeEEEEE
Confidence            4689999985  899999997 999999 9999999987655668999984   566    7788999999999999999


Q ss_pred             EEEECCC-CCeeeEEEEEEEEEe
Q psy8629         234 EALDGGS-PPLRGSMIVNVTIQD  255 (483)
Q Consensus       234 ~a~D~g~-p~~~~~~~v~I~V~d  255 (483)
                      .|+|+|. |++++++.|+|+|+|
T Consensus        76 ~A~D~g~~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           76 QAVDFETNKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             EEEETTTCCBSSCCEEEEEEECC
T ss_pred             EEEECCCCCCcceeEEEEEEEEC
Confidence            9999997 789999999999986

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.69  E-value=1.1e-16  Score=129.06  Aligned_cols=88  Identities=22%  Similarity=0.239  Sum_probs=80.2

Q ss_pred             eeeccCCC--CeEEEEEEEEeCCCCCCceEEEEEeeCC--CCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECC
Q psy8629         348 SFDEIAEP--GTSVFQISAFDQDEGINSVITYSLRENT--DDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNG  423 (483)
Q Consensus       348 ~v~E~~~~--gt~v~~v~a~D~D~~~~~~v~y~l~~~~--~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g  423 (483)
                      .|.||.++  |+.|++|.|+|+|.    .++|+|....  ++..+.|.||+.||.|++.++||||....|.|+|+|+|.|
T Consensus         9 ~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g   84 (100)
T 3k6f_A            9 LIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDAS   84 (100)
T ss_dssp             EEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTT
T ss_pred             EEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEECC
Confidence            57899998  89999999999996    6899998532  3456899999999999999999999999999999999999


Q ss_pred             cCCceEEEEEEEEEEe
Q psy8629         424 VPALSSSATVLVTIHD  439 (483)
Q Consensus       424 ~p~~s~~~~v~I~V~d  439 (483)
                      .|++++.++|.|+|.|
T Consensus        85 ~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           85 GKTLEGPVPLEVIVID  100 (100)
T ss_dssp             CCEEEEEEEEEEEEEC
T ss_pred             CCcccceEEEEEEEEC
Confidence            9999999999999987

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.69  E-value=1.7e-16  Score=127.71  Aligned_cols=88  Identities=20%  Similarity=0.216  Sum_probs=80.1

Q ss_pred             eeeccCCCC--eEEEEEEEEeCCCCCCceEEEEEeeCC--CCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECC
Q psy8629         348 SFDEIAEPG--TSVFQISAFDQDEGINSVITYSLRENT--DDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNG  423 (483)
Q Consensus       348 ~v~E~~~~g--t~v~~v~a~D~D~~~~~~v~y~l~~~~--~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g  423 (483)
                      .|.||.++|  +.|++|.|+|+|.    .++|+|....  ++..+.|.||+.+|.|++.++||||....|.|+|+|+|.|
T Consensus         8 ~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g   83 (99)
T 3k6i_A            8 LIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLS   83 (99)
T ss_dssp             EEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEETT
T ss_pred             EEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEECC
Confidence            578999997  9999999999996    7999998431  3456899999999999999999999999999999999999


Q ss_pred             cCCceEEEEEEEEEEe
Q psy8629         424 VPALSSSATVLVTIHD  439 (483)
Q Consensus       424 ~p~~s~~~~v~I~V~d  439 (483)
                      .|++++.++|.|.|.|
T Consensus        84 ~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           84 GKIIDGPVRLDISVID   99 (99)
T ss_dssp             SCEEEEEEEEEEEEEC
T ss_pred             CCceeeeEEEEEEEEC
Confidence            9999999999999987

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.67  E-value=2.2e-16  Score=128.45  Aligned_cols=90  Identities=20%  Similarity=0.254  Sum_probs=78.6

Q ss_pred             eeeccCC--CCeEEEEEEEEeCCCCCCceEEEEEeeCCCC--CCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECC
Q psy8629         348 SFDEIAE--PGTSVFQISAFDQDEGINSVITYSLRENTDD--HPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNG  423 (483)
Q Consensus       348 ~v~E~~~--~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~--~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g  423 (483)
                      .|.||++  .|+.|+++.| |.  |.|+.++|+|.....+  ..+.|.||+.||.|++.++||||++..|.|+|+|+|.|
T Consensus        12 ~V~En~~~~~~~~v~~v~A-d~--g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D~g   88 (105)
T 2omz_B           12 SCPENEKGPFPKNLVQIKS-NK--DKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSN   88 (105)
T ss_dssp             CEESSCCSSSSEEEEECEE-GG--GGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTT
T ss_pred             EEeCCCCCCCCcEEEEEEC-CC--CCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEECC
Confidence            5789998  5889999999 43  5799999999854211  25689999999999999999999999999999999999


Q ss_pred             cCCceEEEEEEEEEEec
Q psy8629         424 VPALSSSATVLVTIHDV  440 (483)
Q Consensus       424 ~p~~s~~~~v~I~V~dv  440 (483)
                      .|+++++++|.|.|.|+
T Consensus        89 ~p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           89 GNAVEDPMEILITVTDQ  105 (105)
T ss_dssp             SCBSSCCEEEEEEEEC-
T ss_pred             CCceeeEEEEEEEEEeC
Confidence            99999999999999985

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.65  E-value=6.4e-16  Score=124.35  Aligned_cols=88  Identities=24%  Similarity=0.411  Sum_probs=79.4

Q ss_pred             EEEEeCCCCC--CeEEEEEEEEeCCCCCCceEEEEEEe----CCCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEE
Q psy8629         157 SIEFPENTPR--DVKRTLNAAKDRDLGIYNTQRYNIVS----GNTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYS  230 (483)
Q Consensus       157 ~~~V~E~~~~--gt~v~~v~a~D~D~~~~~~~~y~l~~----~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~  230 (483)
                      .+.|+||.++  |+.|++|.|+|+|.    .++|+|.+    +++.+.|.|++.   +|.    |.+.++||||+.+.|.
T Consensus         6 ~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~   74 (99)
T 3k6d_A            6 SISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINEN---SGE----VSVTKALDREAIPSYQ   74 (99)
T ss_dssp             CEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTT---TCE----EEECSCCCTTTCCEEE
T ss_pred             cEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECC---ceE----EEECcCCCcccCceEE
Confidence            5899999999  99999999999997    68999975    344679999984   566    8889999999999999


Q ss_pred             EEEEEEECCCCCeeeEEEEEEEEEe
Q psy8629         231 LVIEALDGGSPPLRGSMIVNVTIQD  255 (483)
Q Consensus       231 l~v~a~D~g~p~~~~~~~v~I~V~d  255 (483)
                      |+|.|+|+|+|++++.+.|+|+|+|
T Consensus        75 l~V~A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           75 LQVETTDENGKTIEGPVDLEILVID   99 (99)
T ss_dssp             EEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCCceeeEEEEEEEEEC
Confidence            9999999999999999999999987

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.63  E-value=2.8e-15  Score=120.84  Aligned_cols=88  Identities=26%  Similarity=0.466  Sum_probs=78.7

Q ss_pred             EEEEeCCCCC--CeEEEEEEEEeCCCCCCceEEEEEEeC----CCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEE
Q psy8629         157 SIEFPENTPR--DVKRTLNAAKDRDLGIYNTQRYNIVSG----NTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYS  230 (483)
Q Consensus       157 ~~~V~E~~~~--gt~v~~v~a~D~D~~~~~~~~y~l~~~----~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~  230 (483)
                      .+.|+||.+.  |+.|++|.|+|+|.    .++|+|.+.    ++.+.|.|++.   +|.    |.+.++||||+...|.
T Consensus         7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~   75 (100)
T 3k6f_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINEN---TGS----VSVTRTLDRETIATYQ   75 (100)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTT---TCE----EEECSCCCTTTCSEEE
T ss_pred             cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECC---CCE----EEECcccCCcCCCEEE
Confidence            4899999998  89999999999997    589999863    34578999984   566    7889999999999999


Q ss_pred             EEEEEEECCCCCeeeEEEEEEEEEe
Q psy8629         231 LVIEALDGGSPPLRGSMIVNVTIQD  255 (483)
Q Consensus       231 l~v~a~D~g~p~~~~~~~v~I~V~d  255 (483)
                      |+|+|+|+|+|++++.++|+|+|+|
T Consensus        76 l~V~A~D~g~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           76 LYVETTDASGKTLEGPVPLEVIVID  100 (100)
T ss_dssp             EEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCCcccceEEEEEEEEC
Confidence            9999999999999999999999987

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.63  E-value=3.8e-15  Score=119.82  Aligned_cols=88  Identities=20%  Similarity=0.357  Sum_probs=78.6

Q ss_pred             EEEEeCCCCCC--eEEEEEEEEeCCCCCCceEEEEEEeC----CCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEE
Q psy8629         157 SIEFPENTPRD--VKRTLNAAKDRDLGIYNTQRYNIVSG----NTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYS  230 (483)
Q Consensus       157 ~~~V~E~~~~g--t~v~~v~a~D~D~~~~~~~~y~l~~~----~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~  230 (483)
                      .+.|+||.+.|  +.|++|.|+|+|.    .++|+|.+.    ++.+.|.|++.   +|.    |.+.++||||+...|.
T Consensus         6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~   74 (99)
T 3k6i_A            6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEI---SGD----VSVTRPLDREAIANYE   74 (99)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTT---TCE----EEECSCCCTTTCCEEE
T ss_pred             cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECC---CcE----EEECcccCCccCCEEE
Confidence            37999999997  8999999999997    699999863    34578999984   566    7889999999999999


Q ss_pred             EEEEEEECCCCCeeeEEEEEEEEEe
Q psy8629         231 LVIEALDGGSPPLRGSMIVNVTIQD  255 (483)
Q Consensus       231 l~v~a~D~g~p~~~~~~~v~I~V~d  255 (483)
                      |.|.|+|+|+|++++.+++.|.|+|
T Consensus        75 l~v~A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           75 LEVEVTDLSGKIIDGPVRLDISVID   99 (99)
T ss_dssp             EEEEEEETTSCEEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCCceeeeEEEEEEEEC
Confidence            9999999999999999999999987

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.61  E-value=1.8e-15  Score=123.09  Aligned_cols=90  Identities=22%  Similarity=0.309  Sum_probs=78.1

Q ss_pred             EEEEeCCCC--CCeEEEEEEEEeCCCCCCceEEEEEEeCCC----CCceEEecccCCCceEEEEEEeccCCCCCCCCEEE
Q psy8629         157 SIEFPENTP--RDVKRTLNAAKDRDLGIYNTQRYNIVSGNT----NNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYS  230 (483)
Q Consensus       157 ~~~V~E~~~--~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~----~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~  230 (483)
                      .+.|+||.+  .|+.|+++.| |  .|.|+.++|+|.+++.    .+.|.|++.   +|.    |.+.++||||+++.|.
T Consensus        10 ~~~V~En~~~~~~~~v~~v~A-d--~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~---tG~----I~~~~~LDrE~~~~y~   79 (105)
T 2omz_B           10 PISCPENEKGPFPKNLVQIKS-N--KDKEGKVFYSITGQGADTPPVGVFIIERE---TGW----LKVTEPLDRERIATYT   79 (105)
T ss_dssp             CCCEESSCCSSSSEEEEECEE-G--GGGSSCCEEEEEEBTTTBSSTTSEEECTT---TCE----EEECSCCCTTTCCEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEC-C--CCCCCeEEEEEeCCCCCCCccCEEEEeCC---CCE----EEECccCCcCCCCeEE
Confidence            478999999  5889999999 3  3568999999988653    358999984   566    7889999999999999


Q ss_pred             EEEEEEECCCCCeeeEEEEEEEEEec
Q psy8629         231 LVIEALDGGSPPLRGSMIVNVTIQDV  256 (483)
Q Consensus       231 l~v~a~D~g~p~~~~~~~v~I~V~dv  256 (483)
                      |+|+|+|+|.|++++++.|+|+|+|+
T Consensus        80 l~V~A~D~g~p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           80 LFSHAVSSNGNAVEDPMEILITVTDQ  105 (105)
T ss_dssp             EEEEEECTTSCBSSCCEEEEEEEEC-
T ss_pred             EEEEEEECCCCceeeEEEEEEEEEeC
Confidence            99999999999999999999999985

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.51  E-value=1.2e-14  Score=117.68  Aligned_cols=64  Identities=20%  Similarity=0.185  Sum_probs=54.5

Q ss_pred             CceEEEEEeCCCCCCeEEEEEEccCCCCC-----CCCEEEEecCCCCCcccEEEeCCccEEEeCccCCccCCc
Q psy8629          17 EHLRDLEISEGVPVGTRVGFIGDGFVGDS-----GPPYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLDRETRS   84 (483)
Q Consensus        17 ~~~~~~~v~En~~~gt~V~~v~a~d~d~~-----~~~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~   84 (483)
                      ..+|.++|+|++++|+.||+| |.|.|..     .+.|+|.+.   +...+|.||+.||.|+++++||||+.+
T Consensus         2 ~~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~---~~~~~F~Id~~tG~i~~~~~LDRE~~~   70 (103)
T 1wuz_A            2 NSQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASK---DRGDLLEVNLQNGILFVNSRIDREELC   70 (103)
T ss_dssp             CCEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCS---SCSCSEEEETTTTEEEECSCCSHHHHC
T ss_pred             ceeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeC---CCccEEEEECCeEEEEECCcCcccccc
Confidence            367899999999999999999 9997632     578999853   235699999999999999999999863

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.35  E-value=1.1e-13  Score=111.91  Aligned_cols=90  Identities=24%  Similarity=0.303  Sum_probs=70.8

Q ss_pred             eeeccCCCCeEEEEEEEEeCCCCCC--ceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCC----CeeEEEEEEEE
Q psy8629         348 SFDEIAEPGTSVFQISAFDQDEGIN--SVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD----PVPKLTVIATD  421 (483)
Q Consensus       348 ~v~E~~~~gt~v~~v~a~D~D~~~~--~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~----~~y~l~V~a~D  421 (483)
                      +|.|++++|+.|++| |.|+|.+.+  ..++|+|..  ++...+|.|++.||.|++.+.||||..    ..|.+.+.+..
T Consensus         8 ~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~--~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~v~~   84 (103)
T 1wuz_A            8 SIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVAS--KDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV   84 (103)
T ss_dssp             EEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBC--SSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEEEEE
T ss_pred             EEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEe--CCCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEEEEE
Confidence            678999999999999 999886322  358899983  456789999999999999999999985    23344444444


Q ss_pred             CCcCCceEEEEEEEEEEecCCC
Q psy8629         422 NGVPALSSSATVLVTIHDVNDN  443 (483)
Q Consensus       422 ~g~p~~s~~~~v~I~V~dvNd~  443 (483)
                      . .| + ..+.|.|.|.|+|||
T Consensus        85 ~-~p-~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           85 D-RP-L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             T-TT-T-EEEEEEEEEECCSCC
T ss_pred             C-CC-C-EEEEEEEEEEEcCCC
Confidence            3 34 3 378999999999997

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=91.03  E-value=7.9  Score=36.51  Aligned_cols=151  Identities=18%  Similarity=0.138  Sum_probs=76.6

Q ss_pred             CCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCC--ce-----EEecccCCCceEEEEEEe
Q psy8629         145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNN--AF-----RLSSHREKDGVLYLDLQI  217 (483)
Q Consensus       145 ND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~--~F-----~i~~~~~~~g~~~~~l~~  217 (483)
                      +|+++.|....-...|.|+.  |+....|.- ..+......+.|+...|....  -|     .+.-..|.+- -.+.|.+
T Consensus         6 dd~~g~i~F~~~~y~V~E~~--g~v~vtV~R-~g~~~~~vtV~y~T~~GTA~ag~Dy~~~~gtl~F~~Get~-kti~V~I   81 (298)
T 3rb5_A            6 ADDPIRMYFEPGHYTVMENC--GEFEVRVVR-RGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDE-QRFRIEV   81 (298)
T ss_dssp             -----CEEESSSEEEEETTS--CCEECCEEE-CSCCSSCEEEEEEEEESSSCBTTTBCCCEEEEEECTTCCE-ECCEECB
T ss_pred             CCCceEEEEeCCEEEEecCc--eEEEEEEEE-ECCCCccEEEEEEeeCCccCCCCCccccceEEEECCCceE-EEEEEEE
Confidence            46677776666678999986  333333322 234433456888887764321  22     1111111111 1112323


Q ss_pred             ccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccE
Q psy8629         218 NGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGE  297 (483)
Q Consensus       218 ~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~  297 (483)
                      ...--+|....|.+.+..-. ++..+......+|+|.| ||++|.|.-..-..+|.|+.  |....+|.-+-.-.+ .-.
T Consensus        82 ~dD~~~E~dEtF~v~Ls~p~-~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~Rs~~~~g-~vt  156 (298)
T 3rb5_A           82 IDDDVFEEDECFYIRLFNPS-EGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVMRYSGARG-TVI  156 (298)
T ss_dssp             CCCSSCCCCEEEEEEEECCC-TTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEEEESCCCS-CEE
T ss_pred             eCCCCccCcEEEEEEEeCCC-CCcEECCCceEEEEEec-cccccccccccccEEeecCC--ceEEEEEEEEecCCC-CEE
Confidence            33333565566666655322 22223333345667776 67789877665567899985  676677665543322 345


Q ss_pred             EEEEEEe
Q psy8629         298 VEYSINR  304 (483)
Q Consensus       298 i~y~i~~  304 (483)
                      +.|....
T Consensus       157 V~~~T~d  163 (298)
T 3rb5_A          157 VPYWTEN  163 (298)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecC
Confidence            7776543

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=89.24  E-value=3.6  Score=40.87  Aligned_cols=95  Identities=14%  Similarity=0.104  Sum_probs=56.9

Q ss_pred             cCCCCCCccCCCce------EEEEeCCCCCCeEEEEEEE---EeCCCCCCceEEEEEEeCCCC----CceEEecccCCCc
Q psy8629         143 DENDNAPTFPSPFM------SIEFPENTPRDVKRTLNAA---KDRDLGIYNTQRYNIVSGNTN----NAFRLSSHREKDG  209 (483)
Q Consensus       143 DvND~~P~f~~~~~------~~~V~E~~~~gt~v~~v~a---~D~D~~~~~~~~y~l~~~~~~----~~F~i~~~~~~~g  209 (483)
                      ..| ++|+.....-      ..+|.+    |..| ++.|   +|+|.   ..++|+-..-...    ....|....  ..
T Consensus       329 ~aN-haPVa~iag~~g~~p~~~~v~a----G~tV-tLdAs~SsDPDG---D~LtY~W~q~~g~g~~~~~vtls~~~--~~  397 (437)
T 2yhg_A          329 AAN-HHPVPVVNNDANEAVMYLNASA----GSTV-SLDASGSSDPDG---DSLNYSWSHYGEADSYSGSVSISNSS--SA  397 (437)
T ss_dssp             GSC-CCCBCCBTTBCCSSCEEEEECT----TCEE-EEECTTCBCTTC---CCEEEEEEECTTTSSCCSCCCEETTT--SS
T ss_pred             cCC-CCCEEEecCCCcccccceEecC----CCEE-EEEeeeeeCCCC---CeEEEEEEEeCCCCccccceEeecCC--Cc
Confidence            345 5788763221      345544    3333 3333   48884   3678877643222    244554322  22


Q ss_pred             eEEEEEEeccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEE
Q psy8629         210 VLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTI  253 (483)
Q Consensus       210 ~~~~~l~~~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V  253 (483)
                      .    +.+..+-+ +....|.|.++++|++.|.+++...++|+|
T Consensus       398 ~----~sft~P~~-~~~~tl~f~LtVTD~~~p~lTs~~rViVtV  436 (437)
T 2yhg_A          398 S----ANVQIPSN-AGGKDIHILLTLRDNGSPNLYAYRRVVINV  436 (437)
T ss_dssp             E----EEEECCTT-CTTCEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred             e----EEEEeCCC-CCCcEEEEEEEEEeCCCCCccEEeEEEEEe
Confidence            3    33334433 456799999999999999999999999987

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=87.92  E-value=2.1  Score=42.55  Aligned_cols=69  Identities=19%  Similarity=0.252  Sum_probs=48.1

Q ss_pred             EeCCCCCCceEEEEEeeCCCC--CCCcEEEe-CCCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEE
Q psy8629         365 FDQDEGINSVITYSLRENTDD--HPSWFQID-SKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTI  437 (483)
Q Consensus       365 ~D~D~~~~~~v~y~l~~~~~~--~~~~F~id-~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V  437 (483)
                      +|+|   +..++|+=..-.++  ......|. +.+..++...+-+ +....|.+.++++|++.|++++...|.|+|
T Consensus       365 sDPD---GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~-~~~~tl~f~LtVTD~~~p~lTs~~rViVtV  436 (437)
T 2yhg_A          365 SDPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSN-AGGKDIHILLTLRDNGSPNLYAYRRVVINV  436 (437)
T ss_dssp             BCTT---CCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTT-CTTCEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred             eCCC---CCeEEEEEEEeCCCCccccceEeecCCCceEEEEeCCC-CCCcEEEEEEEEEeCCCCCccEEeEEEEEe
Confidence            4887   45677776543222  22345564 4455666665544 456789999999999999999999999887

>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A

Probab=84.41  E-value=12  Score=31.76  Aligned_cols=58  Identities=10%  Similarity=-0.038  Sum_probs=28.5

Q ss_pred             EEEEEEEecCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCC
Q psy8629         135 VRVVVRVIDENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNT  195 (483)
Q Consensus       135 ~~v~I~V~DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~  195 (483)
                      +.+.+.|.|- |..+.|....-..+|.|+.  |+.-..|.-...+.+....+.|+...|..
T Consensus        10 ~~~~~~i~dd-d~~g~i~F~~~~y~V~E~~--G~v~vtV~R~~G~~~~~v~V~y~T~dGTA   67 (160)
T 3gin_A           10 AALEVLFQGP-GPVSKIFFEQGTYQCLENC--GTVALTIIRRGGDLTNTVFVDFRTEDGTA   67 (160)
T ss_dssp             ------------CEEEEEESCSEEEEETTS--SEEEEEEEEESSCTTSCEEEEEEEEESSS
T ss_pred             ceEEEEEecC-CCccEEEEeCCEEEEEcCc--EEEEEEEEEccCCCCcEEEEEEEEECCcc
Confidence            4566677764 3456665555568899986  44444443333443334568898887654

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=82.42  E-value=2.9  Score=35.40  Aligned_cols=61  Identities=10%  Similarity=0.101  Sum_probs=46.8

Q ss_pred             HhhhcCceEEEEEeCCCCCCeEEEEEEccCCCCCCC-CEEEEecCCCCCcccEEEeCCccEEEeCccCC
Q psy8629          12 AVAADEHLRDLEISEGVPVGTRVGFIGDGFVGDSGP-PYLIVPVPGSAVDTDLSIEQNTGEIRTKVPLD   79 (483)
Q Consensus        12 ~~~~~~~~~~~~v~En~~~gt~V~~v~a~d~d~~~~-~y~i~~~~~~~~~~~F~Id~~tG~i~~~~~LD   79 (483)
                      -++|.+..|...++-+...|..+++|+-.|+.++.. .|...+  +    ..|.|++ .|.|++++++-
T Consensus        33 ~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g~~~~~~~ssD--p----~dFkV~~-DGtVya~r~v~   94 (159)
T 1op4_A           33 KTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSE--P----ADFKVDE-DGTVYAVRSFP   94 (159)
T ss_dssp             CCBCCSCEEEECCCCSSCSSCCEEECCCBCCSSCCCEEEECCC--S----SEEEEET-TTEEEEESCCS
T ss_pred             cCCcCcceeEEeccccccCCceeceeecccCCCCCceeEEcCC--C----CCeEEeC-CCcEEEeccee
Confidence            348999999888889999999999999999765543 355432  1    1699995 59999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	483
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	2e-16
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	2e-08
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	3e-06
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	8e-16
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	5e-09
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	3e-07
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	6e-15
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	1e-07
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	1e-06
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	8e-14
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	4e-09
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	1e-07
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	5e-05
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	2e-13
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	1e-08
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	1e-07
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	5e-04
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	4e-13
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	5e-13
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	2e-12
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	3e-04
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	3e-12
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	1e-09
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	8e-08
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	6e-05
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	2e-11
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	8e-09
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	3e-07
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	4e-05
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	2e-09
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	2e-08
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	9e-08
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	1e-06
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	3e-09
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	4e-05

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 72.1 bits (176), Expect = 2e-16
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDP 411
           E G    ++     ++   + + YS+     D+P    F+I+ ++G + +   +D E   
Sbjct: 13  ERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYD 72

Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHD 439
              L+  A       +     + + + D
Sbjct: 73  KYVLSSHAVSENGSPVEEPMEITINVID 100

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 271 TVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVNKAL 328
            V EN   G    ++    ++     +V YSI  + +D    G+F I+ ++G + V + L
Sbjct: 8   KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66

Query: 329 DFETKEVH 336
           D E  + +
Sbjct: 67  DREEYDKY 74

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNN-AFRLSSHREKDGVLYLDLQ 216
           I+  EN      + L      +   +N   Y+I     +N    +     + G + +   
Sbjct: 7   IKVSENERGPFPKRLVQI-KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 65

Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
           ++    RE   +Y L   A+     P+   M + + + D
Sbjct: 66  LD----REEYDKYVLSSHAVSENGSPVEEPMEITINVID 100

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 8e-16
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDP 411
           E G     +     ++     + YS+     D P    F I+ ++G + +   +D E   
Sbjct: 16  EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIA 75

Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHD 439
              L   A  +   A+     +L+T+ D
Sbjct: 76  TYTLFSHAVSSNGNAVEDPMEILITVTD 103

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 5e-09
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 261 PIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSK 318
           P+ +      + PEN   G     +    ++    G+V YSI  + +D    G+F I+ +
Sbjct: 1   PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59

Query: 319 SGLIFVNKALDFETKEVH 336
           +G + V + LD E    +
Sbjct: 60  TGWLKVTEPLDRERIATY 77

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTN-NAFRLSSHREKDGVLYLDLQ 216
           I  PEN      + L      +        Y+I     +     +     + G L +   
Sbjct: 10  ISCPENEKGPFPKNLVQI-KSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEP 68

Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
           ++    RE I  Y+L   A+      +   M + +T+ D
Sbjct: 69  LD----RERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.3 bits (166), Expect = 6e-15
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 354 EPGTSVFQISAFDQDEGINSVITYSLRENTDDHP--SWFQIDSKSGLITMKSNVDCETDP 411
             G    ++         N  + YS+     D P    F I+  SG +++   +D E   
Sbjct: 15  SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 74

Query: 412 VPKLTVIATDNGVPALSSSATVLVTIHD 439
              L   A D     + +   +++ + D
Sbjct: 75  RFHLRAHAVDINGNQVENPIDIVINVID 102

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGN-TNNAFRLSSHREKDGVLYLDLQ 216
           I  PEN+     + L            + RY++           +       G L +   
Sbjct: 9   INLPENSRGPFPQELVRI-RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67

Query: 217 INGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
           ++    RE I  + L   A+D     +   + + + + D
Sbjct: 68  LD----RELIARFHLRAHAVDINGNQVENPIDIVINVID 102

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 271 TVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKD--GLFNIDSKSGLIFVNKAL 328
            +PEN+  G    ++    +    N  + YS+    +D+   G+F I+  SG + V K L
Sbjct: 10  NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68

Query: 329 DFETKEVHDLV 339
           D E      L 
Sbjct: 69  DRELIARFHLR 79

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 65.5 bits (158), Expect = 8e-14
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 144 ENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQ---RYNIVSGNTNNAFR 200
           +NDN P F          E      +    +A D D  I +      Y+I+  +      
Sbjct: 1   QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 60

Query: 201 LSSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
             +    +    +   I   LDRE  PEY+L ++A D     L       + I D
Sbjct: 61  --NLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 52.0 bits (123), Expect = 4e-09
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 337 DLVPRFAVEISSF--DEIAEPGTSVFQISAFDQDEGINS---VITYSLRENTDDHP--SW 389
           D  P+F  ++      E  +PGT V  +SA D+D+ I+S   V++YS+ +   + P  + 
Sbjct: 3   DNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNL 62

Query: 390 FQIDSKSGLITMKSN-VDCETDPVPKLTVIATDNGVPALSSSATVLVTIHD 439
           F I+ ++G+I++    +D E  P   LTV ATD     LS     ++ I D
Sbjct: 63  FTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDAD---AGSNGEVEYSINRRQSDKD--G 311
           NDN+P F Q  +  +V E    GT +  V ATD D      NG + YSI ++  ++    
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61

Query: 312 LFNIDSKSGLI-FVNKALDFETKEVHDLV 339
           LF I+ ++G+I  +   LD E    + L 
Sbjct: 62  LFTINRETGVISLIGTGLDREKFPEYTLT 90

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 441 NDNEPIFDQSFYNVTIPENKPKGSCIL 467
           NDN P F Q  +  ++ E    G+ ++
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQVM 28

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 64.6 bits (156), Expect = 2e-13
 Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH 204
           NDNAP F     +   PEN      + L+       G    Q    +  N    F +++ 
Sbjct: 2   NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61

Query: 205 REKDGVLYLDLQINGVLDRETIPEYSLVIEALDG---GSPPLRGSMIVNVTIQDV 256
            E +      L     LD E   +Y L I   +      P    +  V VT++DV
Sbjct: 62  PESN---QGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 337 DLVPRFAVEISSFDEIAE--PGTSVFQISAFDQDEGINSVITYSLRENTDDHPS---WFQ 391
           D  P F  +  +   + E   G  V ++S  D D           +   ++         
Sbjct: 3   DNAPIFDPKTYTA-LVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61

Query: 392 IDSKSGLITMKSNVDCETDPVPKLTVIATDN---GVPALSSSATVLVTIHDV 440
            +S  G++T    +D E      L +   +     VP  +S+ATV VT+ DV
Sbjct: 62  PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGL---F 313
           NDN PIF+   Y A VPEN  +G  + ++  TD D       +     R ++        
Sbjct: 2   NDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60

Query: 314 NIDSKSGLIFVNKALDFETKEVHDLV 339
           + +S  G++   K LDFE ++ + L 
Sbjct: 61  DPESNQGILTTAKGLDFELRKQYVLQ 86

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 441 NDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNISEH 480
           NDN PIFD   Y   +PEN+  G  + +    D+      
Sbjct: 2   NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTP 40

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 63.5 bits (153), Expect = 4e-13
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 3/109 (2%)

Query: 258 DNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDS 317
           +  P F  +     V E+ + G  I  + A D D     ++ Y      +D      ++ 
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYF---IGNDPARWLTVNK 57

Query: 318 KSGLIFVNKALDFETKEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFD 366
            +G++  N  LD E++ V +      + ++        GT    +   D
Sbjct: 58  DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD 106

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 63.1 bits (152), Expect = 5e-13
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 12/115 (10%)

Query: 146 DNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHR 205
           + AP F      ++  E+  R  K     A+D D      +    +  +        +  
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQ-QIQKLSYFIGNDPARWL---TVN 56

Query: 206 EKDGVLYLDLQINGVLDRETI----PEYSLVIEALDGGSPPLRGSMIVNVTIQDV 256
           + +G++      NG LDRE+       Y++++   D G     G+  + + + DV
Sbjct: 57  KDNGIVTG----NGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 61.2 bits (147), Expect = 2e-12
 Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 348 SFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDC 407
              E    G  +  + A D D+     ++Y      +D   W  ++  +G++T   N+D 
Sbjct: 14  DVSEDLSRGEKIISLVAQDPDKQQIQKLSYF---IGNDPARWLTVNKDNGIVTGNGNLDR 70

Query: 408 ETDPVPK----LTVIATDNGVPALSSSATVLVTIHDV 440
           E++ V      + ++ TD+GV   + + T+++ + DV
Sbjct: 71  ESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 442 DNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
           +  P F  +   V + E+  +G  I+  +  D
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQD 32

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 3e-12
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYN---TQRYNIVSGNTNNAFRL 201
           NDN P F          E           +A D D  +        Y IVS +     + 
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK- 59

Query: 202 SSHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD 255
            +    +    +   +   LDRE+ P Y+LV++A D     L  +    +T++D
Sbjct: 60  -NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 1e-09
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 337 DLVPRFAVEISSF--DEIAEPGTSVFQISAFDQDEGI---NSVITYSLRENTDD--HPSW 389
           D  P F  E+      E A PGTSV ++SA D D+ +   N+ I Y++     +  H + 
Sbjct: 2   DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 61

Query: 390 FQIDSKSGLI-TMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHD 439
           F ++  +G+I  + S +D E+ P   L V A D     LS++A  ++T+ D
Sbjct: 62  FTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 8e-08
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGS---NGEVEYSINRRQSDKDG-- 311
           NDN+P F Q  +  +V E A  GTS+ +V ATDAD      N  + Y+I  +  +     
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60

Query: 312 LFNIDSKSGLIFVNKAL-DFETKEVHDLV 339
           +F ++  +G+I V  +  D E+   + LV
Sbjct: 61  MFTVNRDTGVISVLTSGLDRESYPTYTLV 89

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 6e-05
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 441 NDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFNISEH 480
           NDN P F Q  +  ++ E    G+ ++K    D  +    
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 40

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (141), Expect = 2e-11
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 3/114 (2%)

Query: 145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH 204
           NDN P F     +   PE +          A D D              +   +    + 
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60

Query: 205 REKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPP---LRGSMIVNVTIQD 255
              +      + +   LDRE + +Y+L+I+A D    P   L  +    +T+ D
Sbjct: 61  FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 8e-09
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSI----NRRQSDKDGL 312
           NDN+P F    +  +VPE +  GT +  V A DAD  +                +    +
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60

Query: 313 FNIDSKSGLIFVNKAL-DFETKEVHDLV 339
           F I++++G I    A  D E  + + L+
Sbjct: 61  FTINNETGDIITVAAGLDREKVQQYTLI 88

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 337 DLVPRFAVEISSF--DEIAEPGTSVFQISAFDQDEG--INSVITYSLRENTD--DHPSWF 390
           D  P F  ++ +    E ++PGT V  ++A D D+   +N ++ Y +         P+ F
Sbjct: 2   DNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMF 61

Query: 391 QIDSKSGLI-TMKSNVDCETDPVPKLTVIATDNGVP---ALSSSATVLVTIHD 439
            I++++G I T+ + +D E      L + ATD        LS++AT ++T+ D
Sbjct: 62  TINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 4e-05
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 441 NDNEPIFDQSFYNVTIPENKPKGSCILKSIFYDIFN 476
           NDN P F    +N ++PE    G+ ++     D  +
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADD 36

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 7/82 (8%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 255 DVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFN 314
           ++   +  F +  Y A +P++   G  +  V  ++ +             +    +    
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN--------RKRKVQYESSEPADF 56

Query: 315 IDSKSGLIFVNKALDFETKEVH 336
              + G ++  ++     ++  
Sbjct: 57  KVDEDGTVYAVRSFPLTAEQAK 78

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 12/143 (8%), Positives = 30/143 (20%), Gaps = 16/143 (11%)

Query: 143 DENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLS 202
           +       FP    S   P++             + +         +             
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSE------------ 52

Query: 203 SHREKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPI 262
              +        +                +I A D  +   +  + VN++ +     +P+
Sbjct: 53  -PADFKVDEDGTVYAVRSFPLTAEQ-AKFLIYAQDKETQE-KWQVAVNLSREPTLTEEPM 109

Query: 263 F-NQSRYFATVPENATVGTSIFQ 284
                      P      +   Q
Sbjct: 110 KEPHEIEEIVFPRQLAKHSGALQ 132

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (115), Expect = 9e-08
 Identities = 15/140 (10%), Positives = 35/140 (25%), Gaps = 13/140 (9%)

Query: 332 TKEVHDLVPRFAVEISSFD--EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSW 389
           + E+      F  ++ S    +    G  +  +   + +         S   +       
Sbjct: 3   SGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDG 62

Query: 390 FQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIFD- 448
                    +    +     +   K  + A D           V ++       EP+ + 
Sbjct: 63  T--------VYAVRSFPLTAEQA-KFLIYAQDKETQEKWQV-AVNLSREPTLTEEPMKEP 112

Query: 449 QSFYNVTIPENKPKGSCILK 468
                +  P    K S  L+
Sbjct: 113 HEIEEIVFPRQLAKHSGALQ 132

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 6/35 (17%), Positives = 17/35 (48%)

Query: 439 DVNDNEPIFDQSFYNVTIPENKPKGSCILKSIFYD 473
           ++   +  F +  Y+  +P++  +G  +L   F +
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSN 39

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 52.4 bits (124), Expect = 3e-09
 Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 13/117 (11%)

Query: 145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSH 204
           NDN P            +  P     T     D D+          +S  ++  ++    
Sbjct: 1   NDNGPVPSPR--VFTMCDQNPEPQVLT---ISDADIPPNTYPYKVSLSHGSDLTWKAELD 55

Query: 205 REKDGVLYLDLQINGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQP 261
                       +     +    +YS+ +   D  + P    +   V          
Sbjct: 56  S------KGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVC--SCEGKAI 104

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 10/95 (10%), Positives = 22/95 (23%), Gaps = 3/95 (3%)

Query: 351 EIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETD 410
            + +       ++  D D   N+        +     +W       G   + S       
Sbjct: 13  TMCDQNPEPQVLTISDADIPPNTYPYKV-SLSHGSDLTWKAELDSKGTSMLLSPTQQLKK 71

Query: 411 PVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEP 445
               + V+ +D           V  T+        
Sbjct: 72  GDYSIYVLLSDAQNN--PQLTVVNATVCSCEGKAI 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	483
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.81
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.81
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.8
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.79
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.78
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.77
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.77
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.74
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.73
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.72
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.7
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.65
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.61
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.55
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.55
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.53
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.51
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.45
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.44
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.44
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	91.99

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.81  E-value=3.2e-20  Score=151.94  Aligned_cols=105  Identities=27%  Similarity=0.394  Sum_probs=93.7

Q ss_pred             CCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCC---CCceEEEEEEeCCC----CCceEEecccCCCceEEEEEE
Q psy8629         144 ENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLG---IYNTQRYNIVSGNT----NNAFRLSSHREKDGVLYLDLQ  216 (483)
Q Consensus       144 vND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~---~~~~~~y~l~~~~~----~~~F~i~~~~~~~g~~~~~l~  216 (483)
                      .|||+|+|.+..|.+.|+|++++|+.|+++.|+|+|.+   .|+.+.|+|..++.    ...|.|++.   +|.    |.
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~---tG~----i~   73 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRE---TGV----IS   73 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTT---TCE----EE
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeec---cee----EE
Confidence            59999999999999999999999999999999999976   46789999987653    368999884   566    55


Q ss_pred             e-ccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEe
Q psy8629         217 I-NGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD  255 (483)
Q Consensus       217 ~-~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~d  255 (483)
                      + .++||||....|.|.|+|+|.|+|+++++++|+|+|+|
T Consensus        74 ~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          74 LIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             ECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             EeccccCcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            5 46899999999999999999999999999999999987

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=6.9e-20  Score=149.73  Aligned_cols=104  Identities=29%  Similarity=0.417  Sum_probs=92.5

Q ss_pred             CCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCC---CCceEEEEEEeCCC----CCceEEecccCCCceEEEEEEe
Q psy8629         145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLG---IYNTQRYNIVSGNT----NNAFRLSSHREKDGVLYLDLQI  217 (483)
Q Consensus       145 ND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~---~~~~~~y~l~~~~~----~~~F~i~~~~~~~g~~~~~l~~  217 (483)
                      |||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.|   .|+.++|+|.++..    ...|.|++.   +|.    +.+
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~---tG~----i~~   73 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRD---TGV----ISV   73 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTT---TCE----EEE
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecc---cce----EEE
Confidence            8999999999999999999999999999999999986   46789999987532    367999984   566    543


Q ss_pred             -ccCCCCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEe
Q psy8629         218 -NGVLDRETIPEYSLVIEALDGGSPPLRGSMIVNVTIQD  255 (483)
Q Consensus       218 -~~~LD~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~d  255 (483)
                       .+.||||....|.|.|+|+|+|.|+++++++|+|.|+|
T Consensus        74 ~~~~lD~E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          74 LTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             CSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             EecccccccCcEEEEEEEEEECCCCccEEEEEEEEEEEC
Confidence             56899999999999999999999999999999999987

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2e-19  Score=146.89  Aligned_cols=108  Identities=35%  Similarity=0.517  Sum_probs=91.7

Q ss_pred             CCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCC---ccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCccc
Q psy8629         257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGS---NGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETK  333 (483)
Q Consensus       257 Nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~---~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E~~  333 (483)
                      |||+|.|.+..|.+.|+|+++.|+.|+++.|+|+|.|.   ++.++|+|....                           
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~---------------------------   53 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQD---------------------------   53 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEE---------------------------
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCC---------------------------
Confidence            89999999999999999999999999999999999764   345666653210                           


Q ss_pred             ceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEc-ccCCCCCCCe
Q psy8629         334 EVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMK-SNVDCETDPV  412 (483)
Q Consensus       334 ~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~-~~lD~E~~~~  412 (483)
                                                                      .......+|.|++.+|.|++. +.||||....
T Consensus        54 ------------------------------------------------~~~~~~~~F~i~~~tG~i~~~~~~lD~E~~~~   85 (112)
T d1edha2          54 ------------------------------------------------PELPHKNMFTVNRDTGVISVLTSGLDRESYPT   85 (112)
T ss_dssp             ------------------------------------------------SCCSCSCSEEECTTTCEEEECSSCCCTTTCCE
T ss_pred             ------------------------------------------------ccccceeEEEEecccceEEEEecccccccCcE
Confidence                                                            012345689999999999864 5799999999


Q ss_pred             eEEEEEEEECCcCCceEEEEEEEEEEe
Q psy8629         413 PKLTVIATDNGVPALSSSATVLVTIHD  439 (483)
Q Consensus       413 y~l~V~a~D~g~p~~s~~~~v~I~V~d  439 (483)
                      |.|+|+|+|.|.|+++++++|.|.|+|
T Consensus        86 y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          86 YTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             EEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCCccEEEEEEEEEEEC
Confidence            999999999999999999999999987

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.79  E-value=1.8e-19  Score=147.35  Aligned_cols=109  Identities=35%  Similarity=0.509  Sum_probs=92.6

Q ss_pred             cCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCC---ccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCcc
Q psy8629         256 VNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGS---NGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFET  332 (483)
Q Consensus       256 vNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~---~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E~  332 (483)
                      .|||+|.|.+..|.+.|+|+++.|+.|+++.|+|+|.+.   ++.+.|+|....                          
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~--------------------------   54 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQD--------------------------   54 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEES--------------------------
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCC--------------------------
Confidence            499999999999999999999999999999999999763   455666663210                          


Q ss_pred             cceeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEc-ccCCCCCCC
Q psy8629         333 KEVHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMK-SNVDCETDP  411 (483)
Q Consensus       333 ~~~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~-~~lD~E~~~  411 (483)
                                                        +               .....++|.|++.+|.|++. +.||||...
T Consensus        55 ----------------------------------~---------------~~~~~~~F~i~~~tG~i~~~~~~LD~E~~~   85 (113)
T d1l3wa2          55 ----------------------------------P---------------EEPIPNLFTINRETGVISLIGTGLDREKFP   85 (113)
T ss_dssp             ----------------------------------S---------------CCSCSCSEEECTTTCEEEECSCCCCTTTCC
T ss_pred             ----------------------------------C---------------CccccceeeeeecceeEEEeccccCcccCC
Confidence                                              0               11235689999999999885 679999999


Q ss_pred             eeEEEEEEEECCcCCceEEEEEEEEEEe
Q psy8629         412 VPKLTVIATDNGVPALSSSATVLVTIHD  439 (483)
Q Consensus       412 ~y~l~V~a~D~g~p~~s~~~~v~I~V~d  439 (483)
                      .|.|+|+|+|.|.|+++++++|.|+|.|
T Consensus        86 ~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          86 EYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             EEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             EEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            9999999999999999999999999987

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=8.7e-19  Score=143.54  Aligned_cols=105  Identities=29%  Similarity=0.425  Sum_probs=87.9

Q ss_pred             CCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCC--CCCceEEEEEEeCC----CCCceEEecccCCCceEEEEEEec
Q psy8629         145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDL--GIYNTQRYNIVSGN----TNNAFRLSSHREKDGVLYLDLQIN  218 (483)
Q Consensus       145 ND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~--~~~~~~~y~l~~~~----~~~~F~i~~~~~~~g~~~~~l~~~  218 (483)
                      |||+|+|.+..|.+.|+|++++|+.|+++.|+|+|.  +.|+.++|+|.++.    ....|.|++.   +|.+   +.+.
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~---tG~i---~~~~   74 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNE---TGDI---ITVA   74 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSS---SCEE---EECS
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCc---cceE---EEec
Confidence            899999999999999999999999999999999995  56889999998743    2457999974   4653   5678


Q ss_pred             cCCCCCCCCEEEEEEEEEECCCC---CeeeEEEEEEEEEe
Q psy8629         219 GVLDRETIPEYSLVIEALDGGSP---PLRGSMIVNVTIQD  255 (483)
Q Consensus       219 ~~LD~E~~~~~~l~v~a~D~g~p---~~~~~~~v~I~V~d  255 (483)
                      ++||||....|.|.|+|+|.+++   .+++.++|+|.|.|
T Consensus        75 ~~lD~E~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          75 AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             SCCCTTTCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             cccccccCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            89999999999999999996543   36788888888876

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.77  E-value=3.2e-19  Score=144.35  Aligned_cols=103  Identities=24%  Similarity=0.472  Sum_probs=84.6

Q ss_pred             CCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCcccceee
Q psy8629         258 DNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEVHD  337 (483)
Q Consensus       258 d~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E~~~~~~  337 (483)
                      ||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|.+.++.++|+|..   +                             
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~---~-----------------------------   48 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN---D-----------------------------   48 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC---C-----------------------------
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecC---C-----------------------------
Confidence            67999999999999999999999999999999998877777777621   2                             


Q ss_pred             eEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCC----CCee
Q psy8629         338 LVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCET----DPVP  413 (483)
Q Consensus       338 l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~----~~~y  413 (483)
                                                                      ..++|.|++.+|.|++.+.||||.    ...|
T Consensus        49 ------------------------------------------------~~~~F~id~~tG~i~~~~~lD~E~~~~~~~~y   80 (107)
T d1l3wa4          49 ------------------------------------------------PARWLTVNKDNGIVTGNGNLDRESEYVKNNTY   80 (107)
T ss_dssp             ------------------------------------------------SSCCCEEETTTTEEEECSCCCTTSSSCCSSCC
T ss_pred             ------------------------------------------------CcccceeccccceEEEccccChhhccccCCeE
Confidence                                                            234566666667777777777764    3679


Q ss_pred             EEEEEEEECCcCCceEEEEEEEEEEec
Q psy8629         414 KLTVIATDNGVPALSSSATVLVTIHDV  440 (483)
Q Consensus       414 ~l~V~a~D~g~p~~s~~~~v~I~V~dv  440 (483)
                      .|+|+|+|+|.|+++++++|.|+|.||
T Consensus        81 ~l~v~a~D~g~p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          81 TVIMLVTDDGVSVGTGTGTLILHVLDV  107 (107)
T ss_dssp             EEEEEEEECSSSCCCCCEEEECCBCCC
T ss_pred             EEEEEEEECCcCCcEEEEEEEEEEEeC
Confidence            999999999999999999999999986

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.77  E-value=2.6e-19  Score=144.90  Aligned_cols=103  Identities=23%  Similarity=0.337  Sum_probs=93.7

Q ss_pred             CCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCCCC
Q psy8629         146 DNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDRET  225 (483)
Q Consensus       146 D~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~  225 (483)
                      ||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|.+.|+.++|+|.+ +..++|.|++.   +|.    |.+.+.||||.
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~-~~~~~F~id~~---tG~----i~~~~~lD~E~   72 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN-DPARWLTVNKD---NGI----VTGNGNLDRES   72 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC-CSSCCCEEETT---TTE----EEECSCCCTTS
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecC-CCcccceeccc---cce----EEEccccChhh
Confidence            68999999999999999999999999999999999999999999975 44678999984   566    78899999995


Q ss_pred             ----CCEEEEEEEEEECCCCCeeeEEEEEEEEEec
Q psy8629         226 ----IPEYSLVIEALDGGSPPLRGSMIVNVTIQDV  256 (483)
Q Consensus       226 ----~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dv  256 (483)
                          ...|.|.|.|+|+|.|+++++++|.|+|+||
T Consensus        73 ~~~~~~~y~l~v~a~D~g~p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          73 EYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV  107 (107)
T ss_dssp             SSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCCC
T ss_pred             ccccCCeEEEEEEEEECCcCCcEEEEEEEEEEEeC
Confidence                3579999999999999999999999999986

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.3e-18  Score=146.73  Aligned_cols=125  Identities=12%  Similarity=0.121  Sum_probs=106.1

Q ss_pred             cCCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCC
Q psy8629         143 DENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLD  222 (483)
Q Consensus       143 DvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD  222 (483)
                      |+|++.|.|.+..|.+.|+|+.+.|+.|++|.|+|.|.  ++.+.|++.+   ...|.|++    +|.    |.+.++||
T Consensus         5 ~~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d~--~~~~~y~~~~---~~~F~i~~----~G~----I~~~~~ld   71 (136)
T d1op4a_           5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESSE---PADFKVDE----DGT----VYAVRSFP   71 (136)
T ss_dssp             CCCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECCC---SSEEEEET----TTE----EEEESCCS
T ss_pred             CCCCccceecCCeEEEEEECCCCCCCEEEEeEeecCCc--cccceecccc---ceeeeccc----cEE----EEEecccC
Confidence            78999999999999999999999999999999999996  4578998854   45799996    466    77889999


Q ss_pred             CCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEecCCCCCeecCC-ceEEEecCCCCCCcEE
Q psy8629         223 RETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIFNQS-RYFATVPENATVGTSI  282 (483)
Q Consensus       223 ~E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f~~~-~~~~~v~E~~~~gt~v  282 (483)
                      ||.. .|.|.|.|+|+|.|. .+.+.|+|.|.|.|++.|.|... .+...++|+.+.|..+
T Consensus        72 ~e~~-~y~l~V~A~D~g~~~-~~~t~V~i~v~d~nd~~p~~~~~~~~~i~~P~~~~~~~~~  130 (136)
T d1op4a_          72 LTAE-QAKFLIYAQDKETQE-KWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGA  130 (136)
T ss_dssp             CSSS-CEEEEEEEEETTTTE-EEEEEEEECCCCCCCCCCSSCCCCSCCCSSCCCCCCCCSC
T ss_pred             cccc-eEEEEEEEEecCCcc-eeeeEEEEEEcccCCCCCcccCCCCceEEccCcCCCCCCc
Confidence            9975 699999999999875 46678999999999999999654 4467788888777644

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1e-17  Score=136.99  Aligned_cols=108  Identities=34%  Similarity=0.487  Sum_probs=86.4

Q ss_pred             CCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCC--CCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCcccc
Q psy8629         257 NDNQPIFNQSRYFATVPENATVGTSIFQVFATDADA--GSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKE  334 (483)
Q Consensus       257 Nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~--~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E~~~  334 (483)
                      |||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.  +.++.++|+|....                            
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~----------------------------   52 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQA----------------------------   52 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEE----------------------------
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCC----------------------------
Confidence            899999999999999999999999999999999995  44667777774310                            


Q ss_pred             eeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEE-EEcccCCCCCCCee
Q psy8629         335 VHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLI-TMKSNVDCETDPVP  413 (483)
Q Consensus       335 ~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i-~~~~~lD~E~~~~y  413 (483)
                                                                     ..+....+|.|++.+|.+ .+.+.||||....|
T Consensus        53 -----------------------------------------------~~~~~~~~F~i~~~tG~i~~~~~~lD~E~~~~y   85 (114)
T d1ncja2          53 -----------------------------------------------PSTPSPNMFTINNETGDIITVAAGLDREKVQQY   85 (114)
T ss_dssp             -----------------------------------------------SCCSCSCCEEECSSSCEEEECSSCCCTTTCSEE
T ss_pred             -----------------------------------------------cCCCccceEEecCccceEEEeccccccccCCEE
Confidence                                                           012345679999999965 66788999999999


Q ss_pred             EEEEEEEECCcC---CceEEEEEEEEEEe
Q psy8629         414 KLTVIATDNGVP---ALSSSATVLVTIHD  439 (483)
Q Consensus       414 ~l~V~a~D~g~p---~~s~~~~v~I~V~d  439 (483)
                      .|+|+|+|.+.+   .++++++|.|.|.|
T Consensus        86 ~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          86 TLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             EEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             EEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            999999996543   36788889888876

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=4.4e-18  Score=143.44  Aligned_cols=126  Identities=17%  Similarity=0.284  Sum_probs=103.9

Q ss_pred             ecCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCcccc
Q psy8629         255 DVNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKE  334 (483)
Q Consensus       255 dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E~~~  334 (483)
                      |+|++.|.|.+..|.+.|+|+.+.|+.|++|.|+|.|.  ++.+.|++.                               
T Consensus         5 ~~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d~--~~~~~y~~~-------------------------------   51 (136)
T d1op4a_           5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESS-------------------------------   51 (136)
T ss_dssp             CCCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECC-------------------------------
T ss_pred             CCCCccceecCCeEEEEEECCCCCCCEEEEeEeecCCc--cccceeccc-------------------------------
Confidence            68999999999999999999999999999999999995  444666541                               


Q ss_pred             eeeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeE
Q psy8629         335 VHDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPK  414 (483)
Q Consensus       335 ~~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~  414 (483)
                                                                         ....|.|++ +|.|.+.+.||||.. .|.
T Consensus        52 ---------------------------------------------------~~~~F~i~~-~G~I~~~~~ld~e~~-~y~   78 (136)
T d1op4a_          52 ---------------------------------------------------EPADFKVDE-DGTVYAVRSFPLTAE-QAK   78 (136)
T ss_dssp             ---------------------------------------------------CSSEEEEET-TTEEEEESCCSCSSS-CEE
T ss_pred             ---------------------------------------------------cceeeeccc-cEEEEEecccCcccc-eEE
Confidence                                                               123478886 589999999999975 699


Q ss_pred             EEEEEEECCcCCceEEEEEEEEEEecCCCCCeecCCc-eEEEEcCCCCCCcEEE
Q psy8629         415 LTVIATDNGVPALSSSATVLVTIHDVNDNEPIFDQSF-YNVTIPENKPKGSCIL  467 (483)
Q Consensus       415 l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~-~~~~V~E~~~~g~~v~  467 (483)
                      |+|+|+|.|.|.+ +.++|.|.+.|.|||.|.|.... +...++|+.+.|.-++
T Consensus        79 l~V~A~D~g~~~~-~~t~V~i~v~d~nd~~p~~~~~~~~~i~~P~~~~~~~~~l  131 (136)
T d1op4a_          79 FLIYAQDKETQEK-WQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGAL  131 (136)
T ss_dssp             EEEEEEETTTTEE-EEEEEEECCCCCCCCCCSSCCCCSCCCSSCCCCCCCCSCC
T ss_pred             EEEEEEecCCcce-eeeEEEEEEcccCCCCCcccCCCCceEEccCcCCCCCCcc
Confidence            9999999998754 66789999999999999997554 4667889888776543

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.70  E-value=3.4e-17  Score=133.51  Aligned_cols=108  Identities=27%  Similarity=0.321  Sum_probs=89.3

Q ss_pred             CCCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCce-EEEEEEeCCCCCceEEecccC-CCceEEEEEEeccCC
Q psy8629         144 ENDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYNT-QRYNIVSGNTNNAFRLSSHRE-KDGVLYLDLQINGVL  221 (483)
Q Consensus       144 vND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~~-~~y~l~~~~~~~~F~i~~~~~-~~g~~~~~l~~~~~L  221 (483)
                      .|||+|+|.+..|.+.|+|+ ++|+.|+++.|+|+|.+.+.. ..|.+..+.....|.|..... .+|.    |.+.++|
T Consensus         1 aNDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~g~----i~~~~~l   75 (113)
T d1l3wa3           1 ANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGI----LTTAKGL   75 (113)
T ss_dssp             CCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEE----EEESSCC
T ss_pred             CCCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEeeccccccceEEEeecCCCceE----EEeeeec
Confidence            49999999999999999999 579999999999999875432 234444556678899965432 3455    7889999


Q ss_pred             CCCCCCEEEEEEEEEEC---CCCCeeeEEEEEEEEEec
Q psy8629         222 DRETIPEYSLVIEALDG---GSPPLRGSMIVNVTIQDV  256 (483)
Q Consensus       222 D~E~~~~~~l~v~a~D~---g~p~~~~~~~v~I~V~dv  256 (483)
                      |||..+.|.|.|+|+|+   |.|+++++++|+|+|+||
T Consensus        76 D~E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          76 DFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             CCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             ccccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            99999999999999996   677899999999999996

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.65  E-value=1.1e-16  Score=130.52  Aligned_cols=110  Identities=33%  Similarity=0.492  Sum_probs=84.1

Q ss_pred             cCCCCCeecCCceEEEecCCCCCCcEEEEEEEEeCCCCCccEEEEEEEecCCCCCcceEEeCCccEEEEcccCCCcccce
Q psy8629         256 VNDNQPIFNQSRYFATVPENATVGTSIFQVFATDADAGSNGEVEYSINRRQSDKDGLFNIDSKSGLIFVNKALDFETKEV  335 (483)
Q Consensus       256 vNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~i~y~i~~~~~~~~~~F~Id~~tG~l~~~~~LD~E~~~~  335 (483)
                      .|||+|.|.+..|.++|+|+ ++|+.|+++.|+|+|.+.+....|... ..++..+.|.|..                  
T Consensus         1 aNDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~-~~~~~~~~f~i~~------------------   60 (113)
T d1l3wa3           1 ANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYK-IRVNEGGFFNITT------------------   60 (113)
T ss_dssp             CCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECC-BSCCTTSCEEEEE------------------
T ss_pred             CCCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEe-eccccccceEEEe------------------
Confidence            49999999999999999999 579999999999999864332222111 0122233333211                  


Q ss_pred             eeeEeEEEEEeeeeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEE
Q psy8629         336 HDLVPRFAVEISSFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDDHPSWFQIDSKSGLITMKSNVDCETDPVPKL  415 (483)
Q Consensus       336 ~~l~v~~~~~v~~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l  415 (483)
                                                                             .++..+|.|.+.+.||||..+.|.|
T Consensus        61 -------------------------------------------------------~~~~~~g~i~~~~~lD~E~~~~y~l   85 (113)
T d1l3wa3          61 -------------------------------------------------------DPESNQGILTTAKGLDFELRKQYVL   85 (113)
T ss_dssp             -------------------------------------------------------CTTTCCEEEEESSCCCCSSCCCEEE
T ss_pred             -------------------------------------------------------ecCCCceEEEeeeecccccCCEEEE
Confidence                                                                   0123578999999999999999999


Q ss_pred             EEEEEEC---CcCCceEEEEEEEEEEec
Q psy8629         416 TVIATDN---GVPALSSSATVLVTIHDV  440 (483)
Q Consensus       416 ~V~a~D~---g~p~~s~~~~v~I~V~dv  440 (483)
                      +|+|+|.   |.|+++++++|+|.|.||
T Consensus        86 ~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          86 QITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             EECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             EEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            9999997   677899999999999996

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.61  E-value=1.3e-16  Score=128.83  Aligned_cols=105  Identities=15%  Similarity=0.225  Sum_probs=83.2

Q ss_pred             CCCCCccCCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCc-eEEEEEEeCCCCCceEEecccCCCceEEEEEEeccCCCC
Q psy8629         145 NDNAPTFPSPFMSIEFPENTPRDVKRTLNAAKDRDLGIYN-TQRYNIVSGNTNNAFRLSSHREKDGVLYLDLQINGVLDR  223 (483)
Q Consensus       145 ND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~~~-~~~y~l~~~~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~  223 (483)
                      |||+|.|.+..  ..|.|+.+.+.   .|.|+|+|.+.|+ .++|+|.++. ...|.+....  .|.    +...++||+
T Consensus         1 NDNaP~f~~~~--~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~-~~~~~~~~~~--~~~----~~~~~~ld~   68 (107)
T d1l3wa5           1 NDNGPVPSPRV--FTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGS-DLTWKAELDS--KGT----SMLLSPTQQ   68 (107)
T ss_dssp             CCSCCCBSCCC--EEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCS-SSSCBCCBCT--TSS----EEEEBCSSC
T ss_pred             CCCCCccCCCE--EEEEecCCCce---eEEEEcCccCccceeEeeeeeccc-cccccccccc--cee----eeeeecccc
Confidence            89999998755  57899988775   4789999999887 4789887655 4456665432  233    334478999


Q ss_pred             CCCCEEEEEEEEEECCCCCeeeEEEEEEEEEecCCCCCee
Q psy8629         224 ETIPEYSLVIEALDGGSPPLRGSMIVNVTIQDVNDNQPIF  263 (483)
Q Consensus       224 E~~~~~~l~v~a~D~g~p~~~~~~~v~I~V~dvNd~~P~f  263 (483)
                      |....|.|.|+|+|+|+|+++  ++++|+|.|+|||+|.+
T Consensus        69 e~~~~y~l~V~a~D~G~p~~~--~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          69 LKKGDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             CCSSCBCCEEECCSSSCCCEE--EECCEEECSCSSSCCCC
T ss_pred             ccceeEEEEEEEEeCCCCceE--EEEEEEEEEeeCCcCcc
Confidence            999999999999999998765  46889999999999875

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.55  E-value=9.5e-16  Score=123.54  Aligned_cols=51  Identities=12%  Similarity=0.005  Sum_probs=42.9

Q ss_pred             CCcEEEEcccCCCCCCCeeEEEEEEEECCcCCceEEEEEEEEEEecCCCCCee
Q psy8629         395 KSGLITMKSNVDCETDPVPKLTVIATDNGVPALSSSATVLVTIHDVNDNEPIF  447 (483)
Q Consensus       395 ~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f  447 (483)
                      ..|.+...+.||+|....|.|+|+|+|+|.|+++  ++++|+|+|||||+|.+
T Consensus        56 ~~~~~~~~~~ld~e~~~~y~l~V~a~D~G~p~~~--~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          56 SKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             TTSSEEEEBCSSCCCSSCBCCEEECCSSSCCCEE--EECCEEECSCSSSCCCC
T ss_pred             cceeeeeeeccccccceeEEEEEEEEeCCCCceE--EEEEEEEEEeeCCcCcc
Confidence            3445555678999999999999999999998765  57899999999999875

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.55  E-value=1.1e-14  Score=115.47  Aligned_cols=91  Identities=14%  Similarity=0.196  Sum_probs=79.6

Q ss_pred             eeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeCCCC--CCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECCcC
Q psy8629         348 SFDEIAEPGTSVFQISAFDQDEGINSVITYSLRENTDD--HPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVP  425 (483)
Q Consensus       348 ~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~~~~--~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p  425 (483)
                      .+.||.+ +.....+.+.|.|.+.|+.++|+|.....+  ..+.|.|++.||.|++.++||||....|.|+|+|+|.|.|
T Consensus         8 ~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g~~   86 (100)
T d1l3wa1           8 KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGS   86 (100)
T ss_dssp             EEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSC
T ss_pred             EEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECCCC
Confidence            4778864 555678888899998999999999864322  3467999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEEEe
Q psy8629         426 ALSSSATVLVTIHD  439 (483)
Q Consensus       426 ~~s~~~~v~I~V~d  439 (483)
                      ++++++.|.|+|+|
T Consensus        87 ~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          87 PVEEPMEITINVID  100 (100)
T ss_dssp             BCSCCEEEEEEEEC
T ss_pred             cEEeEEEEEEEEeC
Confidence            99999999999987

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=8.6e-15  Score=116.51  Aligned_cols=91  Identities=16%  Similarity=0.206  Sum_probs=79.7

Q ss_pred             eeeccCCCCeEEEEEEEEeCCCCCCceEEEEEeeC--CCCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECCcC
Q psy8629         348 SFDEIAEPGTSVFQISAFDQDEGINSVITYSLREN--TDDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVP  425 (483)
Q Consensus       348 ~v~E~~~~gt~v~~v~a~D~D~~~~~~v~y~l~~~--~~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p  425 (483)
                      .|.||.+ |..+..+.+.|.|.+.|+.+.|+|...  ..+..++|.||+.||.|++.++||||+...|.|+|+|+|.|.|
T Consensus        10 ~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~~   88 (102)
T d1ncia_          10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGN   88 (102)
T ss_dssp             EEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTSC
T ss_pred             EEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEECCCC
Confidence            4679987 556677888899988999999999842  1344678999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEEEe
Q psy8629         426 ALSSSATVLVTIHD  439 (483)
Q Consensus       426 ~~s~~~~v~I~V~d  439 (483)
                      +++++++|.|.|.|
T Consensus        89 ~~~~~~~v~I~V~D  102 (102)
T d1ncia_          89 QVENPIDIVINVID  102 (102)
T ss_dssp             BSSCCEEEEEEEEC
T ss_pred             ceeeeEEEEEEEeC
Confidence            99999999999987

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.45  E-value=2e-13  Score=108.01  Aligned_cols=90  Identities=21%  Similarity=0.331  Sum_probs=77.6

Q ss_pred             EEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeCCC----CCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEEE
Q psy8629         158 IEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSGNT----NNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLVI  233 (483)
Q Consensus       158 ~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~~~----~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~v  233 (483)
                      +.|+||.+ |.....+.+.|.|.+.|+.+.|+|.+++.    .+.|.|++.   +|.    |.+.++||||..+.|.|.|
T Consensus         7 i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~---tG~----I~~~~~lDrE~~~~y~l~V   78 (100)
T d1l3wa1           7 IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWE---TGW----MLVTRPLDREEYDKYVLSS   78 (100)
T ss_dssp             EEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTT---TCE----EEECSCCCTTTCCEEEEEE
T ss_pred             EEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCC---CCE----EEEeeecccccCCEEEEEE
Confidence            78999975 44456778889999999999999997543    356999984   566    7889999999999999999


Q ss_pred             EEEECCCCCeeeEEEEEEEEEe
Q psy8629         234 EALDGGSPPLRGSMIVNVTIQD  255 (483)
Q Consensus       234 ~a~D~g~p~~~~~~~v~I~V~d  255 (483)
                      .|+|.|+|++++++.|+|+|+|
T Consensus        79 ~a~D~g~~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          79 HAVSENGSPVEEPMEITINVID  100 (100)
T ss_dssp             EEEESSSCBCSCCEEEEEEEEC
T ss_pred             EEEECCCCcEEeEEEEEEEEeC
Confidence            9999999999999999999987

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.4e-13  Score=109.35  Aligned_cols=91  Identities=20%  Similarity=0.273  Sum_probs=77.9

Q ss_pred             EEEEeCCCCCCeEEEEEEEEeCCCCCCceEEEEEEeC----CCCCceEEecccCCCceEEEEEEeccCCCCCCCCEEEEE
Q psy8629         157 SIEFPENTPRDVKRTLNAAKDRDLGIYNTQRYNIVSG----NTNNAFRLSSHREKDGVLYLDLQINGVLDRETIPEYSLV  232 (483)
Q Consensus       157 ~~~V~E~~~~gt~v~~v~a~D~D~~~~~~~~y~l~~~----~~~~~F~i~~~~~~~g~~~~~l~~~~~LD~E~~~~~~l~  232 (483)
                      .+.|+||.+ |..+..+.+.|.|.+.|+.+.|+|.++    ++.+.|.|++.   +|.    |++.++||||+...|.|.
T Consensus         8 ~v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~---tG~----i~~~~~LDrE~~~~y~l~   79 (102)
T d1ncia_           8 PINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPI---SGQ----LSVTKPLDRELIARFHLR   79 (102)
T ss_dssp             CEEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTT---TCE----EEECSCCCTTTCSEEEEE
T ss_pred             CEEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCC---CCc----EEEeeecchhcCcceEEE
Confidence            378999987 445567888899998899999999853    23468999984   566    888999999999999999


Q ss_pred             EEEEECCCCCeeeEEEEEEEEEe
Q psy8629         233 IEALDGGSPPLRGSMIVNVTIQD  255 (483)
Q Consensus       233 v~a~D~g~p~~~~~~~v~I~V~d  255 (483)
                      |+|+|.|+|+++++++|+|+|+|
T Consensus        80 V~A~D~g~~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          80 AHAVDINGNQVENPIDIVINVID  102 (102)
T ss_dssp             EEEECTTSCBSSCCEEEEEEEEC
T ss_pred             EEEEECCCCceeeeEEEEEEEeC
Confidence            99999999999999999999987

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.99  E-value=0.39  Score=35.85  Aligned_cols=65  Identities=15%  Similarity=0.150  Sum_probs=43.0

Q ss_pred             eEEEEEeeCC-CCCCCcEEEeCCCcEEEEcccCCCCCCCeeEEEEEEEECCcC---CceEEEEEEEEEEec
Q psy8629         374 VITYSLRENT-DDHPSWFQIDSKSGLITMKSNVDCETDPVPKLTVIATDNGVP---ALSSSATVLVTIHDV  440 (483)
Q Consensus       374 ~v~y~l~~~~-~~~~~~F~id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~g~p---~~s~~~~v~I~V~dv  440 (483)
                      ..+|++.... .+...|..+|+.+|.+.-.  ...+..+.|.++|+|+|.+.-   ...+.-.+.|+|...
T Consensus        32 ~~t~~~~~~~g~~LPsWl~fd~~tg~~~Gt--P~~~~~G~~~i~vtAtD~~~~~s~~~~~~dvf~i~V~P~  100 (103)
T d1u2ca1          32 GEIIKVSAAGKEALPSWLHWDPHSHILEGL--PLDTDKGVHYISVSAARLGANGSHVPQTSSVFSIEVYPE  100 (103)
T ss_dssp             TEEEEEEETTSSSCCTTEEEETTTTEEEEC--CCGGGCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEESS
T ss_pred             ccEEEEEecCCCCCCccEEEeccCCEEEEc--cCCCCceEEEEEEEEEeCCCCcccccEEEEEEEEEeCCC
Confidence            4677776432 2457899999999999874  334567899999999996542   122333345555443