Psyllid ID: psy8639

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
Protein Sequence
MVSRCKFKKYLSNNEIFTSTPNMVSRCKFKKYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSFIDSS
Secondary Structure (PSIPRED)
ccccEEEEEEEEEcEEEEcccccEEEEEEEEEEEccccccccEEcccccccccccccccEEEEEEEcccccccEEEEEEEEccccccccEEEEEEEEEcccccccccEEEEccccEEEEccccccccccEEEEEEEEEEccccccccEEEEEEEEEEEEccccccccccccEEEEEccccccccEEEEEEEEEcccccccEEEEEEEEcccccccEEEEccccEEEEccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEEEccccccEEEccccccEEEEcccccccEEEEEEEEEcccccccEEEEEEEEEccccccEEEEcccccEEEEEcccccccEEEcEEEEEEEEEEcccccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccEEEEEEEEccccccccEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEEccccccEEEEEEccccccccEEEEccccEEEEccccccccccEEEEEEEEEEcccccccEEEEEEEEEEccccccccccccccEEEEcccccccEEEEEEEEEccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEccccEEEcccccccEEEEEEEEEccccccEEEEEEEEcccccccccccEEEEEEccccccccEEEEEEcccccccccccEEEEEEEcccccccccEEEEcccccEEEEcccccHHcccEEEEEEEEEcccccccccccEEEEEEEEEEcccccccEEccEEEEEEcccccccEEEEEEEEEccccccccEEEEEEccccccccEEEEcccccEEEEEccccHHHHccEEEEEEEEccccccccccccEEEEEEEEEEccccccEEEEcccccEEEccccccccEEEEEEEEEccccccccEEEEEEEcccccccEEEEccccEEEEEEEcccccHHHHcccEEEEEEEcccccccccEEEEEEEEEEccccccEEEcccccccccccccccEEEEEEEEEEccccccEEEEEEEcccccccccEEEEEEEEEcccccccccccEEEcccccccEEccccccccEEEEEccccEEEEEccccHHHHHccEEEEEEEccccccccEEEEEEEEEEcccccccccccccEEEEccccccccEEEEEEEEcccccccEEEEEc
Coil and Loop (DISEMBL)
mvsrckfkkylsnneiftstpnmvsrckfkkylsnnevcpkqiftstpnmvsrckfkkylsnneikedvpigftvgnvvstdstgraggghvmysltslsptdhsgafdidkssgsLVVArqldretcpeYKLEVRAldtstssnpqssaVAIKIEIvdvndnaprwgenpltipvnedtlvgstiwnftatdaddgsngelRYGLvrqypegnhfsvdhltgtltllqpldyetLTSFILVVKVTDQAANISERLSTSLTARVVVkdlndnapvfvsptrgsliyvseqtrvgshvtkmtavdqdsgdngRVTYVISGgnedarfhldhdkgILSLARVISEYDHQSKFRAVLNItasdhgippkssSLVINILSEtvstslptflspsyhanvsedaipgtYIIKVVarspstygnyvYTEVFLVsedaipgtyIIKVVARSPSTYVYHMYLISdfsgynltymipagvaddmfkIDAETGVVTLARSldretvdqYNLVVHvtdsksgdydttnVFITILdvndnapefksgscypitipenseaanvHTFIAtdfgnfhksfidss
Flexible Loop (DISEMBL)
mvsrckfkkylsnneiftstpnmvsRCKFKKYlsnnevcpkqiftstpnmvsrCKFKKYLSnneikedvpiGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVraldtstssnpqssavAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFtatdaddgsNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKdlndnapvfvsptrgsliyvseqtrvgshvtkmtavdqdsgdngRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITasdhgippKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLArsldretvdqYNLVvhvtdsksgdydTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSFIDSS
Low Complexity Region (SEG)
MVSRCKFKKYLSNNEIFTSTPNMVSRCKFKKYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSFIDSS
Disordered region (IsUnstruct)
*****KFKKYLSNNEIFTSTPNMVSRCKFKKYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSL********************LVVARQL***TCPEYKL*****************VAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTA*******NGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIP***SSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSF****
Disordered Region (DISOPRED)
MVSRCKFKKYLSNNEIFTSTPNMVSRCKFKKYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSFIDSS
Disordered Region (DISEMBL)
MVSRCKFKKYLSNNEIFTSTPNMVSRCKFKKYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRA***********SAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSFIDSS
Disordered Region (DISPRO)
MVSRCKFKKYLSNNEIFTSTPNMVSRCKFKKYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSFIDSS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSRCKFKKYLSNNEIFTSTPNMVSRCKFKKYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSFIDSS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	570	2.2.26 [Sep-21-2011]
Q24292	3503	Protein dachsous OS=Droso	yes	N/A	0.794	0.129	0.384	1e-99
Q6V1P9	2916	Protocadherin-23 OS=Homo	yes	N/A	0.747	0.146	0.316	3e-50
Q96JQ0	3298	Protocadherin-16 OS=Homo	no	N/A	0.726	0.125	0.313	2e-46
Q9HCU4	2923	Cadherin EGF LAG seven-pa	no	N/A	0.782	0.152	0.293	3e-45
Q6V0I7	4981	Protocadherin Fat 4 OS=Ho	no	N/A	0.705	0.080	0.310	4e-44
Q14517	4588	Protocadherin Fat 1 OS=Ho	no	N/A	0.778	0.096	0.309	1e-43
Q9V5N8	3579	Protocadherin-like wing p	no	N/A	0.722	0.115	0.303	3e-43
Q91ZI0	3301	Cadherin EGF LAG seven-pa	no	N/A	0.757	0.130	0.288	1e-42
Q2PZL6	4981	Protocadherin Fat 4 OS=Mu	no	N/A	0.752	0.086	0.303	2e-42
Q8R508	4555	Protocadherin Fat 3 OS=Ra	no	N/A	0.768	0.096	0.307	7e-42

>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3

 Score =  364 bits (934), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 209/543 (38%), Positives = 313/543 (57%), Gaps = 90/543 (16%)

Query: 65   IKEDVPIGFTVG---------NVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
            ++ED  +G  VG         +VV            V Y+L  L+      AFDID+ SG
Sbjct: 1321 VREDAALGHVVGSISPIERPADVVRNSVEESFEDLRVTYTLNPLTKDLIEAAFDIDRHSG 1380

Query: 116  SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
            +LVVAR LDRE   E++LE+RALDT+ S+NPQSSA+ +KIE+ DVNDNAP W ++P+ + 
Sbjct: 1381 NLVVARLLDREVQSEFRLEIRALDTTASNNPQSSAITVKIEVADVNDNAPEWPQDPIDLQ 1440

Query: 176  VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNH--------FSVDHLTGTLTL 227
            V+E T VG+ I NFTATDAD G+NG+L+Y L+R +P+ N         F +D LTG L+L
Sbjct: 1441 VSEATPVGTIIHNFTATDADTGTNGDLQYRLIRYFPQLNESQEQAMSLFRMDSLTGALSL 1500

Query: 228  LQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT----RGS 283
              PLD+E +  ++L+V+  DQ++N++ERL TS+T R+ + D ND+AP FVSP     + +
Sbjct: 1501 QAPLDFEAVQEYLLIVQALDQSSNVTERLQTSVTVRLRILDANDHAPHFVSPNSSGGKTA 1560

Query: 284  LIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI-- 341
             +++S+ TR+G  V  + AVD+DSGDNG++TY I+GGN + RF ++   GI+ L + +  
Sbjct: 1561 SLFISDATRIGEVVAHIVAVDEDSGDNGQLTYEITGGNGEGRFRINSQTGIIELVKSLPP 1620

Query: 342  SEYDHQSKFRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAI 400
            +  D +   R  L I A DHG P PK SSL ++++ +    + P FL   Y A + E+  
Sbjct: 1621 ATEDVEKGGRFNLIIGAKDHGQPEPKKSSLNLHLIVQGSHNNPPRFLQAVYRATILENVP 1680

Query: 401  PGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSG 460
             G+++++V A+  S +G          +E+A                             
Sbjct: 1681 SGSFVLQVTAK--SLHG----------AENA----------------------------- 1699

Query: 461  YNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS------------ 508
             NL+Y IPAGVA+D+F +D + G++T     DRE+   Y L V+V D+            
Sbjct: 1700 -NLSYEIPAGVANDLFHVDWQRGIITTRGQFDRESQASYVLPVYVRDANRQSTLSSSAVR 1758

Query: 509  --KSGD----------YDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIA 556
              +S D          +D   ++IT+ DVNDN+PEF+ GSCY +++PENSE   +HT +A
Sbjct: 1759 KQRSSDSIGDTSNGQHFDVATIYITVGDVNDNSPEFRPGSCYGLSVPENSEPGVIHTVVA 1818

Query: 557  TDF 559
            +D 
Sbjct: 1819 SDL 1821

Involved in morphogenesis. May also be involved in cell adhesion.
Drosophila melanogaster (taxid: 7227)

>sp|Q6V1P9|PCD23_HUMAN Protocadherin-23 OS=Homo sapiens GN=DCHS2 PE=2 SV=1

 Score =  199 bits (507), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 154/487 (31%), Positives = 237/487 (48%), Gaps = 61/487 (12%)

Query: 78   VVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRA 137
            + S+D   +   G + +S+ +    D  G F+ID S+G L ++++LD ET   Y   V  
Sbjct: 970  IKSSDHLQQHYNGKLHFSIVA---DDKDGHFEIDSSTGDLFLSKELDYETTSHYLFRVIT 1026

Query: 138  LDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG 197
             D S + +  SS V + I++ D ND++P + +  + I V E+  +G+ ++ F A D DDG
Sbjct: 1027 TDHSKNLS-LSSTVFLSIDVEDQNDHSPSFQDELIVISVEENVPIGTLVYVFNAKD-DDG 1084

Query: 198  S--NGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISER 255
            S  N  ++Y +    P  N F +    GTL  +  LD E++ + IL V  +DQA N+++R
Sbjct: 1085 SFLNSRIQYYIESHNPGTNPFLIHPSFGTLVTVSRLDRESIPTVILTVTASDQAVNVTDR 1144

Query: 256  LSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTY 315
               SLTA++V+ D+ND+ P F+S       +V E   VGS V  +TA D D G NG+VTY
Sbjct: 1145 RLRSLTAQIVILDVNDHNPTFISFPNA---HVKEDVTVGSLVHHITAHDPDEGRNGKVTY 1201

Query: 316  VISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINIL 375
             I  GNE+  F LD   G+L+        D++ K + +L + A D G P  SSS  + + 
Sbjct: 1202 SILSGNENMTFMLDESSGLLT---TTCPLDYEMKTQHILTVLALDDGTPALSSSQTLTVT 1258

Query: 376  SETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGT 435
               V+   P F    Y A+V E+  PG ++ +V A                         
Sbjct: 1259 VLDVNDEAPVFKQHLYEASVKENQNPGEFVTRVEA------------------------- 1293

Query: 436  YIIKVVARSPSTYVYHMYLISDFSGYN--LTYMIPAGVADDMFKIDAETGVVTLARSLDR 493
                               +   SG N  L + I  G + ++F+I+++TG V     LDR
Sbjct: 1294 -------------------LDRDSGVNSKLQFEIMPGASFELFEINSDTGEVVTTTILDR 1334

Query: 494  ETVDQYNLVVHVTDSKSGDY-DTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVH 552
            E  + + L V V D        TT +  T+ D ND+APEF   S Y I + EN E   V+
Sbjct: 1335 EIQEVFTLRVLVRDGGFPSLSSTTTILCTVEDENDHAPEFIVSS-YDIEVLENQEPEVVY 1393

Query: 553  TFIATDF 559
            T +A+D 
Sbjct: 1394 TVLASDM 1400

Calcium-dependent cell-adhesion protein.

Homo sapiens (taxid: 9606)

>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2 SV=1

 Score =  187 bits (475), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 230/475 (48%), Gaps = 61/475 (12%)

Query: 87   AGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYK-LEVRALDTSTSSN 145
            AG G + Y+L  +   D  G F +D +SG L +AR LD E  P ++ L VRA        
Sbjct: 1360 AGVGALTYTL--VGGADPEGTFALDAASGRLYLARPLDFEAGPPWRALTVRA---EGPGG 1414

Query: 146  PQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADD-GSNGELRY 204
              +  + +++++ D N++AP +  +PL + + E+   G+ ++ F A+DAD  G N ++RY
Sbjct: 1415 AGARLLRVQVQVQDENEHAPAFARDPLALALPENPEPGAALYTFRASDADGPGPNSDVRY 1474

Query: 205  GLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARV 264
             L+RQ P      +D  TG L+  + LD ET  + +L+V+ TD+ AN S R +  ++ARV
Sbjct: 1475 RLLRQEPPVPALRLDARTGALSAPRGLDRETTPALLLLVEATDRPANASRRRAARVSARV 1534

Query: 265  VVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDA 324
             V D NDNAPVF SP+R   + + E    G     + A D D G+  RV+Y ++ G  D 
Sbjct: 1535 FVTDENDNAPVFASPSR---VRLPEDQPPGPAALHVVARDPDLGEAARVSYRLASGG-DG 1590

Query: 325  RFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLP 384
             F L    G LS+ R +   D + +   VL + ASDHG PP+S++ V+ +    V+   P
Sbjct: 1591 HFRLHSSTGALSVVRPL---DREQRAEHVLTVVASDHGSPPRSATQVLTVSVADVNDEAP 1647

Query: 385  TFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARS 444
            TF    Y   + E+  PGT ++ + A  P                          V A  
Sbjct: 1648 TFQQQEYSVLLRENNPPGTSLLTLRATDPD-------------------------VGANG 1682

Query: 445  PSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH 504
              TY                     GV+ + F +D +TGV+T  R+LDRE  ++ NL V+
Sbjct: 1683 QVTY--------------------GGVSSESFSLDPDTGVLTTLRALDREEQEEINLTVY 1722

Query: 505  VTDSKSGDYDT-TNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
              D  S    T   V + + D ND+AP F S     + +PE  +   +    A+D
Sbjct: 1723 AQDRGSPPQLTHVTVRVAVEDENDHAPTFGSAH-LSLEVPEGQDPQTLTMLRASD 1776

Calcium-dependent cell-adhesion protein.

Homo sapiens (taxid: 9606)

>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens GN=CELSR2 PE=1 SV=1

 Score =  183 bits (464), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 149/507 (29%), Positives = 238/507 (46%), Gaps = 61/507 (12%)

Query: 56  FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
           F++      ++E++ +G+ V  V +TD        +++Y L   S    S  F+ID  SG
Sbjct: 289 FEQQEYKESLRENLEVGYEVLTVRATDGDAPPNA-NILYRLLEGSGGSPSEVFEIDPRSG 347

Query: 116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
            +     +DRE    Y+L V A D      P+S+  A+ + + D NDNAP++ E    + 
Sbjct: 348 VIRTRGPVDREEVESYQLTVEASDQGRDPGPRSTTAAVFLSVEDDNDNAPQFSEKRYVVQ 407

Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
           V ED   G+ +   TA+D D GSN  + Y ++     G  F +D  TG L ++ PLDYET
Sbjct: 408 VREDVTPGAPVLRVTASDRDKGSNAVVHYSIMSGNARG-QFYLDAQTGALDVVSPLDYET 466

Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVS-PTRGSLIYVSEQTRVG 294
              + L V+  D        +S  +T +V+  D+NDNAP+FVS P + +++   E   +G
Sbjct: 467 TKEYTLRVRAQDGGRPPLSNVSGLVTVQVL--DINDNAPIFVSTPFQATVL---ESVPLG 521

Query: 295 SHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVL 354
             V  + A+D D+GDN R+ Y ++G   D  F +++  G +S+A   +E D +       
Sbjct: 522 YLVLHVQAIDADAGDNARLEYRLAGVGHDFPFTINNGTGWISVA---AELDREEVDFYSF 578

Query: 355 NITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPS 414
            + A DHG P  ++S  +++    V+ + PTF  P Y   ++EDA  GT ++ V A    
Sbjct: 579 GVEARDHGTPALTASASVSVTVLDVNDNNPTFTQPEYTVRLNEDAAVGTSVVTVSA---- 634

Query: 415 TYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADD 474
                       V  DA                   H           +TY I +G   +
Sbjct: 635 ------------VDRDA-------------------HSV---------ITYQITSGNTRN 654

Query: 475 MFKIDAET--GVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEF 532
            F I +++  G+V+LA  LD +   QY  V+ VT S     DT  + + + D N + P F
Sbjct: 655 RFSITSQSGGGLVSLALPLDYKLERQY--VLAVTASDGTRQDTAQIVVNVTDANTHRPVF 712

Query: 533 KSGSCYPITIPENSEAANVHTFI-ATD 558
           +S S Y + + E+  A      I ATD
Sbjct: 713 QS-SHYTVNVNEDRPAGTTVVLISATD 738

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2

 Score =  179 bits (455), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 148/476 (31%), Positives = 232/476 (48%), Gaps = 74/476 (15%)

Query: 65   IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
            I E+ PI   V    +TD        ++ Y+L  L+P  +   F I    G + +  +LD
Sbjct: 2059 IPENTPIDTVVFKAQATDPDS-GPNSYIEYTL--LNPLGNK--FSIGTIDGEVRLTGELD 2113

Query: 125  RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGS 184
            RE    Y L V A D    S   SS+  + + ++D+NDN P + +    + +NE+TL G+
Sbjct: 2114 REEVSNYTLTVVATDKGQPS--LSSSTEVVVMVLDINDNNPIFAQALYKVEINENTLTGT 2171

Query: 185  TIWNFTATDADDGSNGELRYGLVRQYPEGN---HFSVDHLTGTLTLLQPLDYETLTSFIL 241
             I    A D D+G+NG++RYG+V     GN    F +D +TG +T+ +PLD E   ++ L
Sbjct: 2172 DIIQVFAADGDEGTNGQVRYGIVN----GNTNQEFRIDSVTGAITVAKPLDREKTPTYHL 2227

Query: 242  VVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF-VSPTRGSLIYVSEQT-RVGSHVTK 299
             V+ TD+ +  + R  TS T  +V+ D+ND  PVF +SP     + V E    +   + +
Sbjct: 2228 TVQATDRGS--TPRTDTS-TVSIVLLDINDFVPVFELSPYS---VNVPENLGTLPRTILQ 2281

Query: 300  MTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITAS 359
            + A D D G N +++YV+ GGNED  F L    G L + + +   D ++K R VL ITA+
Sbjct: 2282 VVARDDDRGSNSKLSYVLFGGNEDNAFTLSA-SGELGVTQSL---DRETKERFVLMITAT 2337

Query: 360  DHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNY 419
            D G P  + +  IN++ + V+ ++PTF S +Y   + EDA  GT ++ V A       N 
Sbjct: 2338 DSGSPALTGTGTINVIVDDVNDNVPTFASKAYFTTIPEDAPTGTDVLLVNASDADASKNA 2397

Query: 420  VYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKID 479
            V                 I+++                               +  F I+
Sbjct: 2398 V-----------------IRIIG-----------------------------GNSQFTIN 2411

Query: 480  AETGVVTLARSLDRETVDQYNLVVHVTDSKSGD--YDTTNVFITILDVNDNAPEFK 533
              TG +  +  LDRET D Y LVV  +D+ S +    +T+V +T+ DVNDN P F+
Sbjct: 2412 PSTGQIITSALLDRETKDNYTLVVVCSDAGSPEPLSSSTSVLVTVTDVNDNPPRFQ 2467

May function in the regulation of planar cell polarity (By similarity). Cadherins are cell-cell interaction molecules.

Homo sapiens (taxid: 9606)

>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2

 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 158/511 (30%), Positives = 231/511 (45%), Gaps = 67/511 (13%)

Query: 57   KKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGA--FDIDKSS 114
            +K L ++ I EDV  G  +  + +TD+  R+    + Y+L        SGA  F ++  +
Sbjct: 3024 EKTLYSDTIPEDVLPGKLIMQISATDADIRSNA-EITYTLLG------SGAEKFKLNPDT 3076

Query: 115  GSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTI 174
            G L  +  LDRE    Y L VRA D       +    +I + + DVNDNAP +  +P  I
Sbjct: 3077 GELKTSTPLDREEQAVYHLLVRATD----GGGRFCQASIVLTLEDVNDNAPEFSADPYAI 3132

Query: 175  PVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYE 234
             V E+T  G+ +    ATDAD G N ++ Y L+        FS++ L+G + L +PLD E
Sbjct: 3133 TVFENTEPGTLLTRVQATDADAGLNRKILYSLIDS--ADGQFSINELSGIIQLEKPLDRE 3190

Query: 235  TLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVG 294
                + L +K  DQ   +  RL+ + T  V V D+NDN PVF     G+   VSE   VG
Sbjct: 3191 LQAVYTLSLKAVDQG--LPRRLTATGTVIVSVLDINDNPPVFEYREYGAT--VSEDILVG 3246

Query: 295  SHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVL 354
            + V ++ A  +D   N  +TY I  GNE  +F +D   G +    +I   D++S     L
Sbjct: 3247 TEVLQVYAASRDIEANAEITYSIISGNEHGKFSIDSKTGAVF---IIENLDYESSHEYYL 3303

Query: 355  NITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPS 414
             + A+D G P  S    +N+    ++ + P F   +Y   +SEDA+    +I V+A    
Sbjct: 3304 TVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVISEDAVLEQSVITVMADD-- 3361

Query: 415  TYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADD 474
                                       A  PS    H             Y I  G    
Sbjct: 3362 ---------------------------ADGPSNSHIH-------------YSIIDGNQGS 3381

Query: 475  MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS-GDYDTTNVFITILDVNDNAPEFK 533
             F ID   G V + + LDRET+  Y L V  +D+ S    +TT V I + DVNDNAP F 
Sbjct: 3382 SFTIDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFS 3441

Query: 534  SGSCYPITIPENSEAA-NVHTFIATDFGNFH 563
             G+ Y + I EN     +V   + TD  + H
Sbjct: 3442 RGN-YSVIIQENKPVGFSVLQLVVTDEDSSH 3471

Plays an essential role for cellular polarization, directed cell migration and modulating cell-cell contact.

Homo sapiens (taxid: 9606)

>sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity protein stan OS=Drosophila melanogaster GN=stan PE=1 SV=4

 Score =  176 bits (447), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 148/487 (30%), Positives = 235/487 (48%), Gaps = 75/487 (15%)

Query: 65  IKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGA--------FDIDKSSG 115
           I+E   +G TV  + +TD   G+     + Y + ++  TD +G         F ID  SG
Sbjct: 473 IREGATVGSTVITLRATDQDIGK--NAEIEYGIEAV--TDGAGLAQDQEMPIFRIDSRSG 528

Query: 116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVNDNAPRWGENPLTI 174
            +     LDRET   Y L V A D +++ + + +A A ++++++D NDN P++ E   T+
Sbjct: 529 VISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTV 588

Query: 175 PVNEDTLVGS---TIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPL 231
            V ED   G+   T+ +  ATDAD G+N  +RY ++    + + FS+D ++G ++L++PL
Sbjct: 589 QVPEDQWGGTEDNTVAHIRATDADQGNNAAIRYAIIGGNTQ-SQFSIDSMSGDVSLVKPL 647

Query: 232 DYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF-VSPTRGSLIYVSEQ 290
           DYE++ S+ LV++  D   + S   +T L   V+  D NDNAP F  S  + S++   E 
Sbjct: 648 DYESVRSYRLVIRAQD-GGSPSRSNTTQLLVNVI--DANDNAPRFYTSQFQESVL---EN 701

Query: 291 TRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKF 350
             VG ++ ++ A D D G N  +TY IS  +++    +D   G +   + I   D + + 
Sbjct: 702 VPVGYNIIRVQAYDSDEGANAEITYSISERDDNFPLAVDPRTGWV---QTIKPLDREEQG 758

Query: 351 RAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVA 410
           R    + A D G+PPKS+S  + I  + V+ + P F    Y ANV ED  PGT +  V A
Sbjct: 759 RFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTA 818

Query: 411 RSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAG 470
             P               ED+                               L Y I  G
Sbjct: 819 TDP--------------DEDS------------------------------RLHYEITTG 834

Query: 471 VADDMFKIDAET--GVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDN 528
                F I ++   G++T+A+SLD +   ++ L V  TDS  G  DT  V I I D N+ 
Sbjct: 835 NTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDS-GGRSDTATVHINITDANNF 893

Query: 529 APEFKSG 535
           AP F++ 
Sbjct: 894 APIFENA 900

Involved in the fz signaling pathway that controls wing tissue polarity. Also mediates homophilic cell adhesion. May play a role in initiating prehair morphogenesis. May play a critical role in tissue polarity and in formation of normal dendrite fields.

Drosophila melanogaster (taxid: 7227)

>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus GN=Celsr3 PE=2 SV=2

 Score =  175 bits (443), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 143/496 (28%), Positives = 227/496 (45%), Gaps = 64/496 (12%)

Query: 56  FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP---TDHSGAFDIDK 112
           F++      ++E+V  G+ +  + +TD        ++ Y     SP   T  + AF+ID 
Sbjct: 424 FEQAQYRETLRENVEEGYPILQLRATDGDAPPNA-NLRYRFVG-SPAVRTAAAAAFEIDP 481

Query: 113 SSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPL 172
            SG +  + ++DRE    Y+L V A D      P+S+ V + I ++D NDNAP++ E   
Sbjct: 482 RSGLISTSGRVDREHMESYELVVEASDQGQEPGPRSATVRVHITVLDENDNAPQFSEKRY 541

Query: 173 TIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLD 232
              V ED    + +   TATD D  +NG + Y ++     G HF++D LTG + ++ PLD
Sbjct: 542 VAQVREDVRPHTVVLRVTATDKDKDANGLVHYNIISGNSRG-HFAIDSLTGEIQVMAPLD 600

Query: 233 YETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVS-PTRGSLIYVSEQT 291
           +E    + L ++  D A       +T L A + V D+ND+AP+FVS P + S++   E  
Sbjct: 601 FEAEREYALRIRAQD-AGRPPLSNNTGL-ASIQVVDINDHAPIFVSTPFQVSVL---ENA 655

Query: 292 RVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFR 351
            +G  V  + AVD D G+N R+ Y ++G   D  F ++   G +S++      D +S   
Sbjct: 656 PLGHSVIHIQAVDADHGENSRLEYSLTGVASDTPFVINSATGWVSVS---GPLDRESVEH 712

Query: 352 AVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVAR 411
               + A DHG PP S+S  + +    V+ + P F    YH  ++EDA  GT ++ V A 
Sbjct: 713 YFFGVEARDHGSPPLSASASVTVTVLDVNDNRPEFTMKEYHLRLNEDAAVGTSVVSVTA- 771

Query: 412 SPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGV 471
                          V  DA                               ++Y I  G 
Sbjct: 772 ---------------VDRDA----------------------------NSAISYQITGGN 788

Query: 472 ADDMFKIDAETGV--VTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNA 529
             + F I  + GV  VTLA  LD +    + LV  +T S    +D   V I I D N + 
Sbjct: 789 TRNRFAISTQGGVGLVTLALPLDYKQERYFKLV--LTASDRALHDHCYVHINITDANTHR 846

Query: 530 PEFKSGSCYPITIPEN 545
           P F+S   Y +++ E+
Sbjct: 847 PVFQSAH-YSVSMNED 861

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 150/494 (30%), Positives = 226/494 (45%), Gaps = 65/494 (13%)

Query: 55   KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSS 114
            +F + + + +I ED   G  V  +++TD      G  + Y +      D  G F ++  +
Sbjct: 1840 RFSRPVYSFDIPEDTTPGSLVAAILATDDDSGVNG-EISYVVEE---DDGDGVFFLNLVT 1895

Query: 115  GSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTI 174
            G   + R LD ET   Y L VRA D       QS+ +     I+DVNDN P +  +  + 
Sbjct: 1896 GVFNLTRALDYETQQYYILTVRAED----GGGQSTTIRAYFNILDVNDNPPVFSMSSYST 1951

Query: 175  PVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYE 234
             + E+  +GST+  F  TDADDG N +L Y +      G  F+VD   G L  L+ LD E
Sbjct: 1952 SLMENLPLGSTVLVFNVTDADDGVNSQLSYSIASGDSLG-QFAVDK-HGVLKTLKALDRE 2009

Query: 235  TLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVG 294
            + + + LV++V D     + R +++    +++ D+NDN P+F+SP    L Y+ E T + 
Sbjct: 2010 SQSFYNLVIQVHDLPQPPTSRFTSTAQVSIILLDVNDNPPMFLSP---KLTYIPENTPID 2066

Query: 295  SHVTKMTAVDQDSGDNGRVTYVI--SGGNEDARFHLDHDKGILSLARVISEYDHQSKFRA 352
            + V K  A D DSG N  + Y +    GN   +F +    G + L     E D +     
Sbjct: 2067 TVVFKAQATDPDSGPNSYIEYTLLNPSGN---KFSIGTIDGEVHLT---GELDREEVSNY 2120

Query: 353  VLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARS 412
             L + A+D G PP SSS  + ++   ++ + P F    Y   + E+ + GT II+V A  
Sbjct: 2121 SLTVVATDKGQPPLSSSTEVVVMVLDINDNNPVFAQAMYRVQIKENILTGTDIIQVSA-- 2178

Query: 413  PSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVA 472
                             D   GT                           + Y I  G  
Sbjct: 2179 ----------------ADNDEGT------------------------NGQVRYGIVGGNT 2198

Query: 473  DDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY-DTTNVFITILDVNDNAPE 531
               F+ID+ TG +T+A+SLDRET   Y L V  TD  S    D+  V IT+LD+ND  P 
Sbjct: 2199 HQEFRIDSVTGAITVAKSLDRETTPAYTLTVQATDRGSSPRTDSCTVAITLLDMNDFVPV 2258

Query: 532  FKSGSCYPITIPEN 545
            F+  S Y + +PEN
Sbjct: 2259 FEL-SPYSVNVPEN 2271

May function in the regulation of planar cell polarity. Cadherins are cell-cell interaction molecules.

Mus musculus (taxid: 10090)

>sp|Q8R508|FAT3_RAT Protocadherin Fat 3 OS=Rattus norvegicus GN=Fat3 PE=1 SV=1

 Score =  172 bits (436), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 154/501 (30%), Positives = 227/501 (45%), Gaps = 63/501 (12%)

Query: 65   IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
            + ED+P    +  V + D+      G + YSL     +D    F +D  SG L     LD
Sbjct: 3037 LPEDIPSNKIILKVSAKDAD-IGSNGDIRYSLYGSGNSD----FFLDPESGELKTLALLD 3091

Query: 125  RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGS 184
            RE  P Y L  RA D        SS V + +E  DVNDN P +  N  T  V E+T   +
Sbjct: 3092 RERVPVYNLIARATDGGGRFC--SSTVLLLLE--DVNDNPPVFSSNHYTACVYENTATKA 3147

Query: 185  TIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVK 244
             +    A D D G N ++ Y L  +      FS+D  +G + L QPLD E  +S+ + V+
Sbjct: 3148 LLTRVQAVDPDVGINRKVVYSL--EDSASGVFSIDSSSGVIVLEQPLDREQQSSYNISVR 3205

Query: 245  VTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVD 304
             TDQ+    + LS+  +  + V D+NDN PVF    R  L+ V E T +G+ V  + A  
Sbjct: 3206 ATDQSP--GQSLSSLTSVTITVLDINDNPPVF--ERRDYLVTVPEDTSLGTQVLSVFATS 3261

Query: 305  QDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIP 364
            +D G N  +TY+I  GNE  +F ++   G +S   V+   D++   R  L + A D G P
Sbjct: 3262 KDIGTNAEITYLIRSGNEQGKFRINPKTGGIS---VLEALDYEMCKRFYLVVEAKDGGTP 3318

Query: 365  PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEV 424
              S++  ++I    V+ + P F    Y A +SEDA+ G  +I                  
Sbjct: 3319 ALSTAATVSIDLTDVNDNPPRFSQDVYSAVISEDALEGDSVI------------------ 3360

Query: 425  FLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGV 484
             L++ED          V   P+                + + I  G  D+ F +D   G+
Sbjct: 3361 LLIAED----------VDSKPNG--------------QIRFSIVGGDRDNEFAVDPILGL 3396

Query: 485  VTLARSLDRETVDQYNLVVHVTDSK-SGDYDTTNVFITILDVNDNAPEFKSGSCYPITIP 543
            V + + LDRE V  Y+L++   DS       TT V I I DVNDN+P F   + Y   I 
Sbjct: 3397 VKVKKKLDRERVSGYSLLIQAVDSGIPAMSSTTTVNIDISDVNDNSPVFTPAN-YTAVIQ 3455

Query: 544  ENSEAA-NVHTFIATDFGNFH 563
            EN     ++   + TD  +FH
Sbjct: 3456 ENKPVGTSILQLVVTDRDSFH 3476

May play a role in the interactions between neurites derived from specific subsets of neurons during development.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
270006362	3474	dachsous [Tribolium castaneum]	0.787	0.129	0.435	1e-110
158297323	2864	AGAP007905-PA [Anopheles gambiae str. PE	0.796	0.158	0.384	1e-103
195032868	3594	GH10500 [Drosophila grimshawi] gi|193904	0.791	0.125	0.396	1e-103
157108477	3131	cadherin [Aedes aegypti] gi|108884003|gb	0.794	0.144	0.404	1e-103
195388388	3639	GJ19658 [Drosophila virilis] gi|19414931	0.794	0.124	0.391	1e-101
170031843	2888	cadherin [Culex quinquefasciatus] gi|167	0.792	0.156	0.393	1e-100
194758613	3563	GF14875 [Drosophila ananassae] gi|190615	0.794	0.127	0.390	1e-100
195350165	2943	GM16650 [Drosophila sechellia] gi|194123	0.796	0.154	0.391	1e-100
194853658	3556	GG24633 [Drosophila erecta] gi|190660069	0.794	0.127	0.390	1e-100
195575605	3038	GD22944 [Drosophila simulans] gi|1941896	0.749	0.140	0.405	1e-100

>gi|270006362|gb|EFA02810.1| dachsous [Tribolium castaneum]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/505 (43%), Positives = 315/505 (62%), Gaps = 56/505 (11%)

Query: 64   EIKEDVPIGFTVGNVVSTDSTGR------AGGGHVMYSLTSLSPTDHSGAFDIDKSSGSL 117
             ++EDV IG  VG V +++S+ +      + GGH+ Y+LTSL P +   AFDID+S+GSL
Sbjct: 1459 RVREDVKIGHVVGTVAASESSDQENMISGSTGGHITYTLTSLMPENVIDAFDIDRSTGSL 1518

Query: 118  VVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVN 177
            VVA++LDRE   EY+LEVRALDTS  +NPQSSA+ ++I+I D NDN+PRW E+ +TI + 
Sbjct: 1519 VVAKELDRERESEYRLEVRALDTSAMNNPQSSAITVRIDIADANDNSPRWPEDLVTISLG 1578

Query: 178  EDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLT 237
            E+T +GS+I NFTATD D GSNG++RY L+ QYP  + F++D LTGTL L   LDYET+ 
Sbjct: 1579 ENTAIGSSIHNFTATDVDSGSNGDVRYHLLHQYPTNDTFTIDTLTGTLILSNSLDYETVQ 1638

Query: 238  SFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHV 297
             + +++  TDQ+ NISER S+S+TARV++ D NDN P FV P   +  ++SE + +G  +
Sbjct: 1639 EYTIIISATDQSLNISERRSSSITARVIITDSNDNPPKFVIPVPPTA-FISESSSIGMKI 1697

Query: 298  TKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNIT 357
            T + AVD DSGDNGRVTYVIS GNE + F L +D G+L+LA+ +   D Q  +  VLN+T
Sbjct: 1698 THLVAVDSDSGDNGRVTYVISSGNEGSLFALGYDTGVLTLAKPLP--DAQRTY--VLNVT 1753

Query: 358  ASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYG 417
            A+DHG P   + + + ++ +    + P F +  Y A+V EDA  GT++ ++ A+S     
Sbjct: 1754 ATDHGTPTLHADMELKLIVQGSEVNPPRFFNALYRADVPEDAPVGTFVTRITAKSG---- 1809

Query: 418  NYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFK 477
                     + ED                             G N+T+ IP  +AD  F+
Sbjct: 1810 ---------LGED-----------------------------GGNITFYIPQEIADGAFQ 1831

Query: 478  IDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD---YDTTNVFITILDVNDNAPEFKS 534
            ID  + V+T ++ LDRET   Y L ++V DS +     +D   + I + DVNDNAPEFK 
Sbjct: 1832 IDPTSAVITTSKYLDRETKSTYTLPIYVIDSTTPGKTLFDVATITIEVTDVNDNAPEFKI 1891

Query: 535  GSCYPITIPENSEAANVHTFIATDF 559
             SCY + +PEN++ A +HT +A D 
Sbjct: 1892 NSCYRLYVPENNDIAVIHTVVAKDL 1916

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297323|ref|XP_317578.4| AGAP007905-PA [Anopheles gambiae str. PEST] gi|157015140|gb|EAA12903.4| AGAP007905-PA [Anopheles gambiae str. PEST]

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 310/528 (58%), Gaps = 74/528 (14%)

Query: 64   EIKEDVPIGFTVGNVVSTDST------GRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSL 117
             ++EDV +G  +G++   + +        +   H+ Y+LT L+     GAFDID++SG L
Sbjct: 750  RLREDVGVGHIIGSISGNEQSDAENFISSSSDLHITYTLTPLTNDITEGAFDIDRNSGKL 809

Query: 118  VVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVN 177
            VVARQLDRE   EY++E+RALDTS S+NPQSSAV +KIEI DVNDN P+W  +P+ + V+
Sbjct: 810  VVARQLDREQQSEYRMEIRALDTSASNNPQSSAVTVKIEIADVNDNPPKWPSDPINVYVS 869

Query: 178  EDTLVGSTIWNFTATDADDGSNGELRYGLVR--QYPEGNHFSVDHLTGTLTLLQPLDYET 235
            EDT VG+ ++NFT  D D G+N E++Y L +     +  +F++D LTG+LTLL PLD+E 
Sbjct: 870  EDTPVGAIVYNFTVQDNDTGTNAEIKYNLSKPAHLAQKEYFAIDSLTGSLTLLAPLDHED 929

Query: 236  LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRG-SLIYVSEQTRVG 294
               F+L+V+ TDQ++N++ERL+TS TAR++V D+NDN+P FV P     ++Y+S+   + 
Sbjct: 930  TQEFLLIVQATDQSSNVTERLTTSATARIMVTDVNDNSPKFVIPQAADGVVYISDSLEID 989

Query: 295  SHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVIS---------EYD 345
              V+ + A+D DSG+NG + Y   GGNED RF +D   G++ LA+  S            
Sbjct: 990  QVVSHVVAIDPDSGENGHIAYTFVGGNEDERFTIDSSTGVIRLAKPFSSNFIMDSGKRNS 1049

Query: 346  HQSKFRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTY 404
               K++ V  I+ASDHG P P+ + + + ++ + ++ + P F+ P YH N++E+   G++
Sbjct: 1050 VSGKYQLV--ISASDHGSPRPREAKMTLQVVIQNMTNNPPRFVEPVYHVNITENVPSGSF 1107

Query: 405  IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLT 464
            +++V ARS S  G+                                        +G NLT
Sbjct: 1108 VVRVSARSHSDGGS---------------------------------------GAGLNLT 1128

Query: 465  YMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS-------------- 510
            Y IP GV +D F +D+  G+VT   + DRE+ D Y + ++VT+                 
Sbjct: 1129 YEIPKGVGEDHFAVDSVRGIVTTRGTFDRESKDLYTIPIYVTEGGRFKKPSSSAASSQDM 1188

Query: 511  GDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
              +D   + + + DVND+APEF  GSCYP+ +PENSE + +HT +ATD
Sbjct: 1189 AQFDVATLVVRVTDVNDHAPEFVQGSCYPLAVPENSELSVIHTVVATD 1236

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195032868|ref|XP_001988576.1| GH10500 [Drosophila grimshawi] gi|193904576|gb|EDW03443.1| GH10500 [Drosophila grimshawi]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 319/547 (58%), Gaps = 96/547 (17%)

Query: 65   IKEDVPIGFTVGNV----------VSTDSTGRAGGG-HVMYSLTSLSPTDHSGAFDIDKS 113
            ++ED  +G  VG++          VS++S         V Y+L  L+     GAFDID++
Sbjct: 1378 VREDAVVGHVVGSISPNERADLPPVSSNSLDELTDLLSVTYTLNPLTKDLIEGAFDIDRN 1437

Query: 114  SGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLT 173
            +G+LVVARQLDRE   E++LE+RALDTS S+NPQSSA+ +KIE+ DVNDNAP W  +P+ 
Sbjct: 1438 TGNLVVARQLDRELQSEFRLEIRALDTSASNNPQSSAITVKIEVADVNDNAPTWPHDPIE 1497

Query: 174  IPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNH--------FSVDHLTGTL 225
            + V+E  +VGS I+NFTATDAD G+NGEL+Y L+R  P+ N         F++D LTG+L
Sbjct: 1498 LEVSESLMVGSIIYNFTATDADSGTNGELQYRLLRYTPQLNETLEKTTPIFAMDSLTGSL 1557

Query: 226  TLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTR---- 281
            +L  PLDYE+L  ++L+V+  DQ++N++ERL TS+T R+ + D NDNAP FV P+     
Sbjct: 1558 SLQAPLDYESLKEYLLIVQALDQSSNVTERLQTSVTVRLRILDANDNAPQFVVPSTSGGG 1617

Query: 282  GSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI 341
             + +YVS+ TR+G  VT + AVD+D+G+NGR++Y I  GN + RF +    GI+ LA+ +
Sbjct: 1618 AATVYVSDATRIGEMVTHILAVDRDAGENGRISYDIVNGNGEGRFRIKPQSGIIELAKTL 1677

Query: 342  ----SEYDHQSKFRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVS 396
                 + D   +F   L I ASDHG+P PK ++L + ++ +   ++ P FL   YHA + 
Sbjct: 1678 PPAFEQLDKTGRF--TLTIRASDHGVPNPKQTTLSLQLMVQGSHSNPPRFLQAVYHATIL 1735

Query: 397  EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLIS 456
            E+   G+++++V A++            F  +++A                         
Sbjct: 1736 ENVPSGSFVLQVAAKA------------FHGADNA------------------------- 1758

Query: 457  DFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSK------- 509
                 NL+Y IP GVADD F +D + G+VT     DRE   +Y L V+V D+        
Sbjct: 1759 -----NLSYEIPTGVADDHFHVDWQRGIVTTRGQFDRELQSRYTLPVYVRDANRMSATPT 1813

Query: 510  ----------------SGD-YDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVH 552
                            SG  +D   + I+I DVNDNAPEF+ GSCY +++PENSE A +H
Sbjct: 1814 SAVRKQRSSESNAELMSGQHFDVATLIISIGDVNDNAPEFRPGSCYGLSVPENSETAIIH 1873

Query: 553  TFIATDF 559
            T +A+D 
Sbjct: 1874 TVVASDL 1880

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108477|ref|XP_001650243.1| cadherin [Aedes aegypti] gi|108884003|gb|EAT48228.1| AAEL000700-PA [Aedes aegypti]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/522 (40%), Positives = 310/522 (59%), Gaps = 69/522 (13%)

Query: 64   EIKEDVPIGFTVGNVVSTDSTG------RAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSL 117
             ++EDV +G  +G++   + +        +   H+ Y+LT L+     GAFDID++SG L
Sbjct: 1006 RLREDVGVGHVIGSISGNEQSDLENLITSSNDLHITYTLTPLTNDIAEGAFDIDRNSGKL 1065

Query: 118  VVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVN 177
            VVAR LDRE   EY++E+RALDTS S+NPQSSAV +KIEI DVNDN P+W  +P+ + ++
Sbjct: 1066 VVARSLDREQQSEYRMEIRALDTSASNNPQSSAVTVKIEIADVNDNPPKWPSDPMNVYIS 1125

Query: 178  EDTLVGSTIWNFTATDADDGSNGELRYGLVR-QYPEGNHFSVDHLTGTLTLLQPLDYETL 236
            ED  VGS ++NFTATD D G+N E++Y + +    +   FS+D LTG+LTLL PLDYE  
Sbjct: 1126 EDAAVGSVVFNFTATDNDSGTNAEIKYNISKPATAQKEFFSIDSLTGSLTLLAPLDYEET 1185

Query: 237  TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSP-TRGSLIYVSEQTRVGS 295
              F+L+V+ TDQ++N++ER++TS TAR++V D+NDN+P FV P  + + +YVS+   V  
Sbjct: 1186 KEFLLIVQATDQSSNVTERMTTSATARIMVTDVNDNSPKFVVPQAQDTTVYVSDSMEVNH 1245

Query: 296  HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLAR-----VISEYDHQS-K 349
             V+ + A+D+DSG+NGRV Y I  GNED RF +D D G + LA+      I++    S  
Sbjct: 1246 IVSHVVAIDRDSGENGRVVYKIVSGNEDERFAIDPDTGFVKLAKPFSSNFIADNSKNSIT 1305

Query: 350  FRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKV 408
             R  L ITA+D G P  K + + I ++ +  S + P FL   YH N++E+   G+++++V
Sbjct: 1306 GRYNLVITATDQGTPRSKEAKITIQVVIQNTSNNPPRFLESVYHINITENVPTGSFVVRV 1365

Query: 409  VARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIP 468
             A+S +  GN                                           NLTY IP
Sbjct: 1366 SAKSYNDNGN------------------------------------------ANLTYEIP 1383

Query: 469  AGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTD------SKSG------DYDTT 516
             GV DD F +D+  G+VT   + DRE+ D Y + ++VT+      + SG       +D  
Sbjct: 1384 KGVGDDHFVVDSVRGIVTTRGTFDRESKDMYTVPIYVTEQNRFKSAASGTSKDMSQFDVA 1443

Query: 517  NVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
             + + I DVND+APEF  GSCYP+ +PENSE + +HT +A+D
Sbjct: 1444 TLVVRITDVNDHAPEFLPGSCYPLAVPENSELSVIHTVVASD 1485

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388388|ref|XP_002052862.1| GJ19658 [Drosophila virilis] gi|194149319|gb|EDW65017.1| GJ19658 [Drosophila virilis]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/546 (39%), Positives = 316/546 (57%), Gaps = 93/546 (17%)

Query: 65   IKEDVPIGFTVGNV-----------VSTDSTGRAGGGH-VMYSLTSLSPTDHSGAFDIDK 112
            ++ED  +G  VG++           V+ +S    G    V Y+L  LS     GAFDID+
Sbjct: 1414 VREDAVVGHVVGSISPNERSAELPPVNGNSLDELGDQLCVTYTLNPLSKDLIEGAFDIDR 1473

Query: 113  SSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPL 172
            ++G+LVVARQLDRE   E++LE+RALDTS S+NPQSSA+ +KIE+ DVNDNAPRW ++P+
Sbjct: 1474 NTGNLVVARQLDRELQSEFRLEIRALDTSASNNPQSSAITVKIEVADVNDNAPRWPKDPI 1533

Query: 173  TIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNH--------FSVDHLTGT 224
             + V+E   VG+ + NFTATDAD G+NGEL+Y L+R  P+ N         F++D LTG+
Sbjct: 1534 ELEVSESLPVGAILHNFTATDADSGTNGELQYRLLRYTPQLNESLEQISPLFALDSLTGS 1593

Query: 225  LTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTR--- 281
            L+L  PLD+E+L  ++L+V+  DQ++N++ERL TS+T R+ + D NDNAP FV P+R   
Sbjct: 1594 LSLQAPLDFESLQEYLLIVQALDQSSNVTERLQTSVTVRLRILDANDNAPQFVVPSRSAG 1653

Query: 282  -GSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARV 340
              + +YVS+ TR+G  VT + AVD D+G+NGR++Y I  GN + RF +    GI+ LA+ 
Sbjct: 1654 GAATVYVSDATRIGELVTHIVAVDSDAGENGRISYDIVSGNGEGRFRIKPQSGIIELAKT 1713

Query: 341  ISEYDHQ--SKFRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSE 397
            +     Q     R +L I ASDHG P  + ++L + +L +   ++ P FL   Y A + E
Sbjct: 1714 LPPASEQLDKTGRFMLTIRASDHGAPTAQQTTLSLQLLVQGSHSNPPRFLQAVYQATILE 1773

Query: 398  DAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISD 457
            +   G+++++V A++            F  +++A                          
Sbjct: 1774 NVPSGSFVLQVAAKA------------FHGADNA-------------------------- 1795

Query: 458  FSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSK-------- 509
                NL+Y IP GVA D F +D + G+VT     DRET  QY L ++V D+         
Sbjct: 1796 ----NLSYEIPTGVAADHFHVDWQRGIVTTRGQFDRETHSQYTLPIYVRDANRMAATPTS 1851

Query: 510  ---------------SGD-YDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHT 553
                           SG  +D   + ITI DVNDNAPEF+ G+CY +++PENSE++ +HT
Sbjct: 1852 AIRKQRSSESNSEPASGQHFDVATLIITIGDVNDNAPEFRPGACYGLSVPENSESSVIHT 1911

Query: 554  FIATDF 559
             +A+D 
Sbjct: 1912 VVASDL 1917

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170031843|ref|XP_001843793.1| cadherin [Culex quinquefasciatus] gi|167871192|gb|EDS34575.1| cadherin [Culex quinquefasciatus]

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/523 (39%), Positives = 311/523 (59%), Gaps = 71/523 (13%)

Query: 64   EIKEDVPIGFTVGNVVSTDSTG------RAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSL 117
             ++EDV +G  +G++  ++ +            H+ Y+LT L+     GAFDID++SG L
Sbjct: 786  RLREDVGVGHVIGSISGSEQSDLDNLITATNDLHITYTLTPLTNDITEGAFDIDRNSGKL 845

Query: 118  VVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVN 177
            VVAR LDRE   EY++E+RALDTS S+NPQSSAV +KIEI DVNDN P+W  +P+ + ++
Sbjct: 846  VVARSLDREQQSEYRMEIRALDTSASNNPQSSAVTVKIEIADVNDNPPKWPSDPINVYIS 905

Query: 178  EDTLVGSTIWNFTATDADDGSNGELRYGLVR-QYPEGNHFSVDHLTGTLTLLQPLDYETL 236
            ED+ VG+ ++NFTATD+D G+N EL+Y L +   P+  +FS+D LTG+LTLL PLDYE  
Sbjct: 906  EDSPVGAIVFNFTATDSDSGTNAELKYNLSKPATPQKEYFSIDSLTGSLTLLAPLDYEET 965

Query: 237  TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSP-TRGSLIYVSEQTRVGS 295
              F+L+V+ TDQ++N +ER++TS TAR++V D+NDN+P FV P  + +++Y+S+   V  
Sbjct: 966  KEFLLIVQATDQSSNATERMTTSATARIMVTDVNDNSPSFVVPQAQDTVVYISDSLEVNQ 1025

Query: 296  HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLAR------VISEYDHQSK 349
             V    A+D+DSG+NGR+ Y I  GN+D RF +D D G + LA+      +     +   
Sbjct: 1026 IVAHTVAIDRDSGENGRIVYKIVSGNDDERFVIDPDSGFVKLAKPFSSNFIADSTKNSVT 1085

Query: 350  FRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKV 408
             R  L I+ASD G+P  K + + I I+ +  + + P FL   YH N+SE           
Sbjct: 1086 GRYNLVISASDQGVPRSKETKINIQIVIQNTTNNPPRFLESVYHVNISE----------- 1134

Query: 409  VARSPSTYGNYVYTEVFLVSEDAIP-GTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMI 467
                                  ++P G+++++V A+S +          D    NLTY I
Sbjct: 1135 ----------------------SVPTGSFVVRVSAKSSN----------DNGNANLTYEI 1162

Query: 468  PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTD------SKSG------DYDT 515
            P GV +D F +D+  G+VT   + DRE+ D Y + ++VT+      + SG       +D 
Sbjct: 1163 PKGVGEDHFVVDSVRGIVTTRGTFDRESKDMYTIPIYVTEQNRFKSAGSGTSKDISQFDI 1222

Query: 516  TNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
              + + + DVND+APEF  GSCYP+ +PENS+ + +HT  A+D
Sbjct: 1223 ATLVVRVTDVNDHAPEFLPGSCYPLAVPENSDLSVIHTVAASD 1265

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758613|ref|XP_001961556.1| GF14875 [Drosophila ananassae] gi|190615253|gb|EDV30777.1| GF14875 [Drosophila ananassae]

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/546 (39%), Positives = 313/546 (57%), Gaps = 93/546 (17%)

Query: 65   IKEDVPIGFTVGNVVSTDSTGRAGGG---------HVMYSLTSLSPTDHSGAFDIDKSSG 115
            ++ED  +G  VG++  ++    +             + Y+LT L+     GAFDID+ SG
Sbjct: 1370 VREDAVVGHVVGSISPSERPVESVQNSLEPFSEQLRITYTLTPLTKDLIEGAFDIDRHSG 1429

Query: 116  SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
            +LVV++ LDRE   E+KLE+RALDT+ S+NPQSSA+ +KIE+ DVNDNAP+W ++P+ + 
Sbjct: 1430 NLVVSKLLDREVQSEFKLEIRALDTTASNNPQSSAITVKIEVADVNDNAPKWAQDPIDLQ 1489

Query: 176  VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNH--------FSVDHLTGTLTL 227
              E T VGS I NFTATDAD G+NGEL+Y L+R +P  N         FS+D LTG+L+L
Sbjct: 1490 AKETTPVGSIIHNFTATDADTGTNGELQYRLLRYFPNVNESQEAATSLFSMDPLTGSLSL 1549

Query: 228  LQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT----RGS 283
            L PLD+E +  ++L+V+  DQ++N++ERL TS+T R+ + D+NDNAP FVSP     +G+
Sbjct: 1550 LAPLDFEAVPEYLLIVQALDQSSNVTERLQTSVTVRLRIVDVNDNAPHFVSPKAANGKGA 1609

Query: 284  LIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI-- 341
             I++++ TR+G  V  + AVD+D+G+NGR+TY ISGGN + RF ++   G++ LA+ +  
Sbjct: 1610 SIFINDATRIGEVVAHIVAVDEDTGENGRITYEISGGNGEGRFRINPQTGVIELAKSLPP 1669

Query: 342  SEYDHQSKFRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAI 400
            +  D     R  L ITA DHG P  KSS + + IL +    + P FL   Y A + E+A 
Sbjct: 1670 ATEDEDKSGRFNLLITAKDHGEPEAKSSQMSLQILVQGNHNNPPRFLEAVYEAKILENAP 1729

Query: 401  PGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSG 460
             G+++++            V  + F   E+A                             
Sbjct: 1730 SGSFVLQ------------VTAKTFHGVENA----------------------------- 1748

Query: 461  YNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS------------ 508
             NL+Y IPAGVADD+F +D + G+VT     DRE+   Y   ++V D+            
Sbjct: 1749 -NLSYEIPAGVADDLFHVDWQRGIVTTRGQFDRESRASYVFPIYVRDANRLGSSAAASAS 1807

Query: 509  -----KSGD----------YDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHT 553
                 +S D          +D   V +TI DVNDNAPEF+ GSCY +++PEN+E   +HT
Sbjct: 1808 AVRKQRSSDSVDEGPEGQHFDVATVQVTIEDVNDNAPEFRPGSCYGLSVPENTEPGVIHT 1867

Query: 554  FIATDF 559
             +A D 
Sbjct: 1868 VVAIDL 1873

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195350165|ref|XP_002041612.1| GM16650 [Drosophila sechellia] gi|194123385|gb|EDW45428.1| GM16650 [Drosophila sechellia]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/542 (39%), Positives = 315/542 (58%), Gaps = 88/542 (16%)

Query: 64   EIKEDVPIGFTVG---------NVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSS 114
             ++ED  +G  VG         +VV            V Y+L  L+      AFDID+ S
Sbjct: 774  RVREDAALGHVVGSISPIERPADVVRNSVEKSFEDLRVTYTLNPLTKDLIEAAFDIDRHS 833

Query: 115  GSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTI 174
            G+LVVAR LDRE   E++LE+RALDT+ ++NPQSSA+ +KIE+ DVNDNAP W ++P+ +
Sbjct: 834  GNLVVARLLDREVQSEFRLEIRALDTTATNNPQSSAITVKIEVADVNDNAPEWPQDPIDL 893

Query: 175  PVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNH------FSVDHLTGTLTLL 228
             V+E T VG+ I NFTATDAD G+NG+L+Y L+R +P+ N       FS+D LTG L+L 
Sbjct: 894  QVSEATPVGTIIHNFTATDADTGTNGDLQYRLIRYFPQLNESQEQAIFSMDSLTGALSLQ 953

Query: 229  QPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT----RGSL 284
             PLD+E +  ++L+V+  DQ++N++ERL TS+T R+ V D NDNAP FVSP     + + 
Sbjct: 954  APLDFEAVQEYLLIVQALDQSSNVTERLQTSVTVRLQVLDANDNAPQFVSPNANGGKTAS 1013

Query: 285  IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI--S 342
            +++S+ TR+G  V  + AVD+DSGDNGR+TY I+GGN + RF ++   G++ L + +  +
Sbjct: 1014 LFISDATRIGEVVAHIVAVDEDSGDNGRLTYEITGGNGEGRFRINSQTGVIELVKSLPPA 1073

Query: 343  EYDHQSKFRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIP 401
              D +   R  L ITA DHG P PK SSL ++++ +    + P FL   Y A + E+   
Sbjct: 1074 TEDVEKGGRFNLIITAKDHGQPEPKKSSLSLHLVVQGSHNNPPRFLQAVYRATILENVPS 1133

Query: 402  GTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGY 461
            G+++++V A+S   +G          +E+A                              
Sbjct: 1134 GSFVLQVTAKS--LHG----------AENA------------------------------ 1151

Query: 462  NLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS------------- 508
            NL+Y IPAGVA+D+F +D + G++T     DRE+   Y L V+V D+             
Sbjct: 1152 NLSYEIPAGVANDLFHVDWQRGIITTRGQFDRESQASYVLPVYVRDANRLSTMSSSAVRK 1211

Query: 509  -KSGD----------YDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIAT 557
             +S D          +D   ++IT+ DVNDN+PEF+ GSCY +++PENSE   +HT +A+
Sbjct: 1212 QRSSDSIGDTSNGQHFDVATIYITVGDVNDNSPEFRPGSCYGLSVPENSEPGVIHTVVAS 1271

Query: 558  DF 559
            D 
Sbjct: 1272 DL 1273

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194853658|ref|XP_001968202.1| GG24633 [Drosophila erecta] gi|190660069|gb|EDV57261.1| GG24633 [Drosophila erecta]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/543 (39%), Positives = 317/543 (58%), Gaps = 90/543 (16%)

Query: 65   IKEDVPIGFTVG---------NVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
            ++ED  +G  VG         +VV            V Y+L  L+      AFDID+ SG
Sbjct: 1374 VREDAALGHVVGSISPIERPADVVRNSVEESFEDLRVTYTLNPLTKDLIEAAFDIDRHSG 1433

Query: 116  SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
            +LVVAR LDRE   E++LE+RALDT+ ++NPQSSA+ +KIE+ DVNDNAP W ++P+ + 
Sbjct: 1434 NLVVARLLDREVQSEFRLEIRALDTTATNNPQSSAITVKIEVADVNDNAPEWPQDPIDLQ 1493

Query: 176  VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNH--------FSVDHLTGTLTL 227
            V+E T +G+ I NFTATDAD G+NG+L+Y L+R +P+ N         FS+D LTG+L+L
Sbjct: 1494 VSEATPIGTIIHNFTATDADTGTNGDLQYRLIRYFPQLNESQEQAMTLFSMDSLTGSLSL 1553

Query: 228  LQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT----RGS 283
              PLD+ET+  ++L+V+  DQ++N++ERL TS+T R+ V D NDNAP FVSP     + +
Sbjct: 1554 QAPLDFETVQEYLLIVQALDQSSNVTERLQTSVTVRLRVLDANDNAPKFVSPNSSGGKTA 1613

Query: 284  LIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI-- 341
             +++S+ TR+G  V  + AVD+DSGDNGR+TY I+GGN + RF ++   GI+ L + +  
Sbjct: 1614 SLFISDATRIGEVVAHIVAVDEDSGDNGRLTYEITGGNGEGRFRINSQTGIIELVKSLPP 1673

Query: 342  SEYDHQSKFRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAI 400
            +  D +   R  L I+A DHG P PK SSL ++++ +    + P FL   Y A + E+  
Sbjct: 1674 ATEDVEKGGRFNLIISAKDHGQPEPKKSSLNLHLIVQGSHNNPPRFLQAVYRATILENVP 1733

Query: 401  PGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSG 460
             G+++++V A+  S +G          +E+A                             
Sbjct: 1734 SGSFVLQVTAK--SLHG----------AENA----------------------------- 1752

Query: 461  YNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS------------ 508
             NL+Y IPAGVA+D+F +D + G++T     DRE+   Y L V+V D+            
Sbjct: 1753 -NLSYEIPAGVANDLFHVDWQRGIITSRGQFDRESQASYVLPVYVRDANRLSTLSSSAVR 1811

Query: 509  --KSGD----------YDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIA 556
              +S D          +D   ++IT+ DVNDN+PEF+ GSCY +++PENSE   +HT +A
Sbjct: 1812 KQRSSDSIGDTSNGQHFDVATIYITVGDVNDNSPEFRPGSCYGLSVPENSEPGVIHTVVA 1871

Query: 557  TDF 559
            +D 
Sbjct: 1872 SDL 1874

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195575605|ref|XP_002077668.1| GD22944 [Drosophila simulans] gi|194189677|gb|EDX03253.1| GD22944 [Drosophila simulans]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/506 (40%), Positives = 303/506 (59%), Gaps = 79/506 (15%)

Query: 91   HVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSA 150
             V Y+L  L+      AFDID+ SG+LVVAR LDRE   E++LE+RALDT+ ++NPQSSA
Sbjct: 1428 RVTYTLNPLTKDLIEAAFDIDRHSGNLVVARLLDREVQSEFRLEIRALDTTATNNPQSSA 1487

Query: 151  VAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY 210
            + +KIE+ DVNDNAP W ++P+ + V+E T VG+ I NFTATDAD G+NG+L+Y L+R +
Sbjct: 1488 ITVKIEVADVNDNAPEWPQDPIDLQVSEATPVGTIIHNFTATDADTGTNGDLQYRLIRYF 1547

Query: 211  PEGNH------FSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARV 264
            P+ N       FS+D LTG L+L  PLD+E +  ++L+V+  DQ++N++ERL TS+T R+
Sbjct: 1548 PQLNESQEQAIFSMDSLTGALSLQAPLDFEAVQEYLLIVQALDQSSNVTERLQTSVTVRL 1607

Query: 265  VVKDLNDNAPVFVSPT----RGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGG 320
             V D NDNAP FVSP     + + +++S+ TR+G  V  + AVD+DSGDNGR+TY I+GG
Sbjct: 1608 QVLDANDNAPQFVSPNSSGGKTASLFISDATRIGEVVAHIVAVDEDSGDNGRLTYEITGG 1667

Query: 321  NEDARFHLDHDKGILSLARVI--SEYDHQSKFRAVLNITASDHGIP-PKSSSLVINILSE 377
            N + RF ++   GI+ L + +  +  D +   R  L ITA DHG P PK SSL ++++ +
Sbjct: 1668 NGEGRFRINSQTGIIELVKSLPPATEDVEKGGRFNLIITAKDHGQPEPKKSSLSLHLVVQ 1727

Query: 378  TVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYI 437
                + P FL   Y A + E+   G+++++V A+S   +G          +E+A      
Sbjct: 1728 GSHNNPPRFLQAVYRATILENVPSGSFVLQVTAKS--LHG----------AENA------ 1769

Query: 438  IKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVD 497
                                    NL+Y IP GVA+D+F +D + G++T     DRE+  
Sbjct: 1770 ------------------------NLSYEIPGGVANDLFHVDWQRGIITTRGQFDRESQA 1805

Query: 498  QYNLVVHVTDS--------------KSGD----------YDTTNVFITILDVNDNAPEFK 533
             Y L V+V D+              +S D          +D   ++IT+ DVNDN+PEF+
Sbjct: 1806 SYVLPVYVRDANRLSTLSSSAVRKQRSSDSIGDTSNGQHFDVATIYITVGDVNDNSPEFR 1865

Query: 534  SGSCYPITIPENSEAANVHTFIATDF 559
             GSCY +++PENSE   +HT +A+D 
Sbjct: 1866 PGSCYGLSVPENSEPGVIHTVVASDL 1891

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
FB|FBgn0000497	3503	ds "dachsous" [Drosophila mela	0.610	0.099	0.424	4.9e-94
UNIPROTKB|F1NB81	2475	F1NB81 "Uncharacterized protei	0.6	0.138	0.382	1.1e-66
UNIPROTKB|E1C566	2926	E1C566 "Uncharacterized protei	0.6	0.116	0.382	1.8e-66
ZFIN|ZDB-GENE-050208-41	3286	dchs1b "dachsous 1b (Drosophil	0.592	0.102	0.368	2.3e-65
UNIPROTKB|Q6V1P9	2916	DCHS2 "Protocadherin-23" [Homo	0.564	0.110	0.343	7.1e-58
UNIPROTKB|F1MQP6	2838	F1MQP6 "Uncharacterized protei	0.564	0.113	0.358	2.2e-55
UNIPROTKB|J9NZ92	2836	DCHS2 "Uncharacterized protein	0.535	0.107	0.342	1.6e-54
UNIPROTKB|Q96JQ0	3298	DCHS1 "Protocadherin-16" [Homo	0.601	0.104	0.336	9.6e-54
UNIPROTKB|F1RX34	2824	DCHS2 "Uncharacterized protein	0.535	0.108	0.358	3.6e-53
UNIPROTKB|E2RR85	4982	FAT4 "Uncharacterized protein"	0.608	0.069	0.320	5.4e-53

FB|FBgn0000497 ds "dachsous" [Drosophila melanogaster (taxid:7227)]

 Score = 742 (266.3 bits), Expect = 4.9e-94, Sum P(3) = 4.9e-94
 Identities = 158/372 (42%), Positives = 239/372 (64%)

Query:    65 IKEDVPIGFTVGNV--------VSTDSTGRAGGG-HVMYSLTSLSPTDHSGAFDIDKSSG 115
             ++ED  +G  VG++        V  +S   +     V Y+L  L+      AFDID+ SG
Sbjct:  1321 VREDAALGHVVGSISPIERPADVVRNSVEESFEDLRVTYTLNPLTKDLIEAAFDIDRHSG 1380

Query:   116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
             +LVVAR LDRE   E++LE+RALDT+ S+NPQSSA+ +KIE+ DVNDNAP W ++P+ + 
Sbjct:  1381 NLVVARLLDREVQSEFRLEIRALDTTASNNPQSSAITVKIEVADVNDNAPEWPQDPIDLQ 1440

Query:   176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNH--------FSVDHLTGTLTL 227
             V+E T VG+ I NFTATDAD G+NG+L+Y L+R +P+ N         F +D LTG L+L
Sbjct:  1441 VSEATPVGTIIHNFTATDADTGTNGDLQYRLIRYFPQLNESQEQAMSLFRMDSLTGALSL 1500

Query:   228 LQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT----RGS 283
               PLD+E +  ++L+V+  DQ++N++ERL TS+T R+ + D ND+AP FVSP     + +
Sbjct:  1501 QAPLDFEAVQEYLLIVQALDQSSNVTERLQTSVTVRLRILDANDHAPHFVSPNSSGGKTA 1560

Query:   284 LIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI-- 341
              +++S+ TR+G  V  + AVD+DSGDNG++TY I+GGN + RF ++   GI+ L + +  
Sbjct:  1561 SLFISDATRIGEVVAHIVAVDEDSGDNGQLTYEITGGNGEGRFRINSQTGIIELVKSLPP 1620

Query:   342 SEYDHQSKFRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAI 400
             +  D +   R  L I A DHG P PK SSL ++++ +    + P FL   Y A + E+  
Sbjct:  1621 ATEDVEKGGRFNLIIGAKDHGQPEPKKSSLNLHLIVQGSHNNPPRFLQAVYRATILENVP 1680

Query:   401 PGTYIIKVVARS 412
              G+++++V A+S
Sbjct:  1681 SGSFVLQVTAKS 1692

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0005886 "plasma membrane" evidence=ISS

GO:0018149 "peptide cross-linking" evidence=IPI

GO:0016021 "integral to membrane" evidence=TAS

GO:0004872 "receptor activity" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISS

GO:0050839 "cell adhesion molecule binding" evidence=ISS;IDA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0004871 "signal transducer activity" evidence=NAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP;TAS

GO:0016318 "ommatidial rotation" evidence=TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IMP;TAS

GO:0045317 "equator specification" evidence=IMP

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IMP

GO:0007164 "establishment of tissue polarity" evidence=NAS

GO:0001736 "establishment of planar polarity" evidence=IGI;IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0035222 "wing disc pattern formation" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0048592 "eye morphogenesis" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0090176 "microtubule cytoskeleton organization involved in establishment of planar polarity" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IGI

UNIPROTKB|F1NB81 F1NB81 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 591 (213.1 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 137/358 (38%), Positives = 204/358 (56%)

Query:    67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRE 126
             E V  G  +G+V   D+  R   G + Y++         G F +D  +G +  AR+LD E
Sbjct:  1314 EGVRPGSVIGSVAPPDAPAR---GQLTYTVIG---GGGDGTFVVDSVTGEIYAARELDYE 1367

Query:   127 TCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTI 186
                 + L+V A DT     P S  V ++I + D ND AP + E+P+TI V E+   GS++
Sbjct:  1368 ARARHTLQVSAEDTQ-HGYPSSRLVLVQILVQDCNDQAPTFPEDPITIVVPENAQAGSSV 1426

Query:   187 WNFTATDADD-GSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKV 245
             + F A D D  G N ++RY L+RQ P G  F +D  +G L+L Q LD E + SF+LVV+ 
Sbjct:  1427 FTFQALDGDGVGPNSQVRYALLRQEPPGAPFHLDSRSGLLSLHQSLDREAVASFLLVVEA 1486

Query:   246 TDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQ 305
             TDQA N+S+R S+++TARV V D+NDNAPVF+SP   + + V+E    G     + A D 
Sbjct:  1487 TDQARNVSQRRSSAVTARVFVTDVNDNAPVFLSP---AAVSVTEDRPTGFVALHVVAQDN 1543

Query:   306 DSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPP 365
             D G+NGRV+Y +  GN D RFHL+   G LS+ R ++    +   +  L + A+DHG P 
Sbjct:  1544 DLGENGRVSYSLRAGNGDGRFHLNPSTGALSVVRALNR---EEVVQHNLTVVAADHGFPR 1600

Query:   366 KSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVA--RSPSTYGNYVY 421
             +S++ +++IL   V+   PTF  P Y A+V E+   G+ +++V+A  R     G   Y
Sbjct:  1601 RSATQLLSILVLDVNDEAPTFEKPEYEAHVMENLPAGSPVLQVLATDRDLGANGQVTY 1658

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C566 E1C566 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 591 (213.1 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 137/358 (38%), Positives = 204/358 (56%)

Query:    67 EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRE 126
             E V  G  +G+V   D+  R   G + Y++         G F +D  +G +  AR+LD E
Sbjct:  1305 EGVRPGSVIGSVAPPDAPAR---GQLTYTVIG---GGGDGTFVVDSVTGEIYAARELDYE 1358

Query:   127 TCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTI 186
                 + L+V A DT     P S  V ++I + D ND AP + E+P+TI V E+   GS++
Sbjct:  1359 ARARHTLQVSAEDTQ-HGYPSSRLVLVQILVQDCNDQAPTFPEDPITIVVPENAQAGSSV 1417

Query:   187 WNFTATDADD-GSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKV 245
             + F A D D  G N ++RY L+RQ P G  F +D  +G L+L Q LD E + SF+LVV+ 
Sbjct:  1418 FTFQALDGDGVGPNSQVRYALLRQEPPGAPFHLDSRSGLLSLHQSLDREAVASFLLVVEA 1477

Query:   246 TDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQ 305
             TDQA N+S+R S+++TARV V D+NDNAPVF+SP   + + V+E    G     + A D 
Sbjct:  1478 TDQARNVSQRRSSAVTARVFVTDVNDNAPVFLSP---AAVSVTEDRPTGFVALHVVAQDN 1534

Query:   306 DSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPP 365
             D G+NGRV+Y +  GN D RFHL+   G LS+ R ++    +   +  L + A+DHG P 
Sbjct:  1535 DLGENGRVSYSLRAGNGDGRFHLNPSTGALSVVRALNR---EEVVQHNLTVVAADHGFPR 1591

Query:   366 KSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVA--RSPSTYGNYVY 421
             +S++ +++IL   V+   PTF  P Y A+V E+   G+ +++V+A  R     G   Y
Sbjct:  1592 RSATQLLSILVLDVNDEAPTFEKPEYEAHVMENLPAGSPVLQVLATDRDLGANGQVTY 1649

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050208-41 dchs1b "dachsous 1b (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 543 (196.2 bits), Expect = 2.3e-65, Sum P(2) = 2.3e-65
 Identities = 129/350 (36%), Positives = 200/350 (57%)

Query:    63 NEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQ 122
             N ++   P G  +G+V + D       G V Y +  +  TDH G F +D+ +G + +AR+
Sbjct:  1320 NSVEGAKP-GSVIGSVRAHDQREVTLNGQVTYLV--VGGTDHEGTFMVDRLTGDVYLARE 1376

Query:   123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLV 182
             LD E    Y L++  +D  + + P +  + ++I + D ND+AP++ E+P+TI + E+T  
Sbjct:  1377 LDYEKGSRYTLQIE-VDDFSKAYPNTHMIQLEINVQDSNDHAPQFPEDPVTIVIPENTQA 1435

Query:   183 GSTIWNFTATDAD-DGSNGELRYGLVRQYPEG-NHFSVDHLTGTLTLLQPLDYETLTSFI 240
             GS+++ F ATD D  G N E+RY + +++P+  + F++D +TG L L + LD+E  +S  
Sbjct:  1436 GSSVYTFQATDKDGSGPNSEIRYSVQQRWPDNPDLFNLDPVTGVLKLGRELDHEETSSLF 1495

Query:   241 LVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKM 300
             LVV+  D A + ++RL  S+TARV V D NDNAP+F SPT  S   V E   VG  +  +
Sbjct:  1496 LVVQAMDSALDPNQRLWGSVTARVFVTDENDNAPIFSSPTAVS---VMEDQPVGFVLLYV 1552

Query:   301 TAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASD 360
              A D D G+NGRV+Y I  GN   RF L  + G LS+ + +   + Q  +   L I A D
Sbjct:  1553 MAWDADQGENGRVSYRIQSGNTAGRFVLSSNSGSLSILKPLDR-EEQESYN--LTIVAED 1609

Query:   361 HGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVA 410
             HGIP  S++ V++I    V+   P F    + A + E+   GT II+V A
Sbjct:  1610 HGIPQHSTTQVLSIQVIDVNDEAPWFERNEFEAQIRENQPAGTSIIQVTA 1659

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6V1P9 DCHS2 "Protocadherin-23" [Homo sapiens (taxid:9606)]

 Score = 476 (172.6 bits), Expect = 7.1e-58, Sum P(3) = 7.1e-58
 Identities = 115/335 (34%), Positives = 181/335 (54%)

Query:    78 VVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRA 137
             + S+D   +   G + +S+ +    D  G F+ID S+G L ++++LD ET   Y   V  
Sbjct:   970 IKSSDHLQQHYNGKLHFSIVA---DDKDGHFEIDSSTGDLFLSKELDYETTSHYLFRVIT 1026

Query:   138 LDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG 197
              D S + +  SS V + I++ D ND++P + +  + I V E+  +G+ ++ F A D DDG
Sbjct:  1027 TDHSKNLS-LSSTVFLSIDVEDQNDHSPSFQDELIVISVEENVPIGTLVYVFNAKD-DDG 1084

Query:   198 S--NGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISER 255
             S  N  ++Y +    P  N F +    GTL  +  LD E++ + IL V  +DQA N+++R
Sbjct:  1085 SFLNSRIQYYIESHNPGTNPFLIHPSFGTLVTVSRLDRESIPTVILTVTASDQAVNVTDR 1144

Query:   256 LSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTY 315
                SLTA++V+ D+ND+ P F+S       +V E   VGS V  +TA D D G NG+VTY
Sbjct:  1145 RLRSLTAQIVILDVNDHNPTFISFPNA---HVKEDVTVGSLVHHITAHDPDEGRNGKVTY 1201

Query:   316 VISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINIL 375
              I  GNE+  F LD   G+L+    +   D++ K + +L + A D G P  SSS  + + 
Sbjct:  1202 SILSGNENMTFMLDESSGLLTTTCPL---DYEMKTQHILTVLALDDGTPALSSSQTLTVT 1258

Query:   376 SETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVA 410
                V+   P F    Y A+V E+  PG ++ +V A
Sbjct:  1259 VLDVNDEAPVFKQHLYEASVKENQNPGEFVTRVEA 1293

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MQP6 F1MQP6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 490 (177.5 bits), Expect = 2.2e-55, Sum P(2) = 2.2e-55
 Identities = 120/335 (35%), Positives = 181/335 (54%)

Query:    78 VVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRA 137
             + S D   R  GG + +S+ +    D  G F++D S+G L ++++LD E    Y L V  
Sbjct:   891 IKSPDHLQRQHGGKLHFSIAA---DDKDGHFEVDSSTGDLFLSKELDYEMMSHYLLRVVT 947

Query:   138 LDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG 197
              D S +  P +S V + + + D ND++P + E  + I V E+T VG+ +  F A D D G
Sbjct:   948 KDHSRNP-PVNSTVFLSVAVEDQNDHSPSFREEFIVISVPENTPVGTLVHIFNAKDGD-G 1005

Query:   198 S--NGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISER 255
             S  N  ++Y +   +P  N F +   +GTL    PLD E + + +L V  +DQA N+++R
Sbjct:  1006 SFLNSRIQYFIEANHPGMNPFLIHPSSGTLVTTSPLDRERVPTVVLTVTASDQAVNVTDR 1065

Query:   256 LSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTY 315
                SL A+VV+ D+ND++P F S     + +V E   VGS V  +TA D D+G NGRVT+
Sbjct:  1066 RLRSLMAKVVILDVNDHSPTFTS---FPIAHVREDAAVGSLVHHITAQDPDAGRNGRVTF 1122

Query:   316 VISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINIL 375
              I  GNE+  F LD   G L+ A   S  D++ K + +L + A D G P  SSS  + I 
Sbjct:  1123 SILSGNENMAFMLDESSGFLTTA---SPLDYEIKSQHILTLLALDGGTPTLSSSQTLTIT 1179

Query:   376 SETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVA 410
                V+   P F    Y A+V E+  PG ++ +V A
Sbjct:  1180 VLDVNDEAPVFKQHLYEASVKENQNPGEFVTRVEA 1214

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9NZ92 DCHS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 463 (168.0 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
 Identities = 108/315 (34%), Positives = 171/315 (54%)

Query:    98 SLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEI 157
             S++  D  G F+ID S+G L ++++LD E    Y   V   D S +  P +S V + I++
Sbjct:   907 SIAADDKDGHFEIDSSTGDLFLSKELDYEMTSHYLFRVVTKDHSKTP-PLNSTVFLSIDV 965

Query:   158 VDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS--NGELRYGLVRQYPEGNH 215
              D ND++P + E  + I V E+  +G+ +  F A D D GS  N  ++Y +   +P  + 
Sbjct:   966 EDQNDHSPSFQEELIVISVEENVPIGTLVHVFNAKDGD-GSFLNSRIQYFIESHHPGVSP 1024

Query:   216 FSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV 275
             F +    GTL    PLD E + + IL +  +DQA N+++R   SL A+V++ D+ND++P 
Sbjct:  1025 FLIHPSFGTLVTASPLDRERVPTVILTITASDQAVNVTDRRLRSLMAKVMILDVNDHSPT 1084

Query:   276 FVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGIL 335
             F+S     + ++ E   VGS V  + A D D G NGR+TY I  GNE+  F LD   G+L
Sbjct:  1085 FLS---FPIAHIKENATVGSLVHHIMAQDPDEGRNGRITYSILSGNENMAFMLDESSGLL 1141

Query:   336 SLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANV 395
             +    +   D++ K + +L + A D GIP  SSS  + I    ++   P F    Y A+V
Sbjct:  1142 TTTCPL---DYEVKAQHILTLLALDDGIPALSSSQTLTITVLDINDEAPVFQQNLYEASV 1198

Query:   396 SEDAIPGTYIIKVVA 410
              E+  PG ++ +V A
Sbjct:  1199 KENQNPGQFVTRVEA 1213

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q96JQ0 DCHS1 "Protocadherin-16" [Homo sapiens (taxid:9606)]

 Score = 475 (172.3 bits), Expect = 9.6e-54, Sum P(2) = 9.6e-54
 Identities = 124/368 (33%), Positives = 195/368 (52%)

Query:    72 GFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEY 131
             G  +G+V + +    AG G + Y+L  +   D  G F +D +SG L +AR LD E  P +
Sbjct:  1348 GSLLGSVAAPEP---AGVGALTYTL--VGGADPEGTFALDAASGRLYLARPLDFEAGPPW 1402

Query:   132 K-LEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFT 190
             + L VRA     +    +  + +++++ D N++AP +  +PL + + E+   G+ ++ F 
Sbjct:  1403 RALTVRAEGPGGAG---ARLLRVQVQVQDENEHAPAFARDPLALALPENPEPGAALYTFR 1459

Query:   191 ATDADD-GSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQA 249
             A+DAD  G N ++RY L+RQ P      +D  TG L+  + LD ET  + +L+V+ TD+ 
Sbjct:  1460 ASDADGPGPNSDVRYRLLRQEPPVPALRLDARTGALSAPRGLDRETTPALLLLVEATDRP 1519

Query:   250 ANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGD 309
             AN S R +  ++ARV V D NDNAPVF SP+R   + + E    G     + A D D G+
Sbjct:  1520 ANASRRRAARVSARVFVTDENDNAPVFASPSR---VRLPEDQPPGPAALHVVARDPDLGE 1576

Query:   310 NGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSS 369
               RV+Y ++ G  D  F L    G LS+ R +   D + +   VL + ASDHG PP+S++
Sbjct:  1577 AARVSYRLASGG-DGHFRLHSSTGALSVVRPL---DREQRAEHVLTVVASDHGSPPRSAT 1632

Query:   370 LVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPS-------TYGNYVYT 422
              V+ +    V+   PTF    Y   + E+  PGT ++ + A  P        TYG  V +
Sbjct:  1633 QVLTVSVADVNDEAPTFQQQEYSVLLRENNPPGTSLLTLRATDPDVGANGQVTYGG-VSS 1691

Query:   423 EVFLVSED 430
             E F +  D
Sbjct:  1692 ESFSLDPD 1699

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

UNIPROTKB|F1RX34 DCHS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 466 (169.1 bits), Expect = 3.6e-53, Sum P(2) = 3.6e-53
 Identities = 113/315 (35%), Positives = 167/315 (53%)

Query:    98 SLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEI 157
             S++  D  G F+ID S+G L ++++LD E    Y   V   D ST+  P SS + + + +
Sbjct:   891 SIAADDRDGQFEIDSSTGDLFLSKELDYEMTSHYLFRVVTKDHSTTP-PLSSMIFLSVAV 949

Query:   158 VDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS--NGELRYGLVRQYPEGNH 215
              D ND++P + E  + I V ED  VG+ +  F A D D GS  N  ++Y +    P  N 
Sbjct:   950 EDQNDHSPSFREEFIVISVEEDAPVGTLVHVFNAKDGD-GSFLNSRVQYFIEAHPPAVNP 1008

Query:   216 FSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV 275
             F +    GTL    PLD E + + +L V  +DQA N+++R   SL A+VV+ D+ND++P 
Sbjct:  1009 FLIHPSFGTLVTASPLDRERVPTVVLTVTASDQAVNVTDRRLRSLVAKVVILDVNDHSPT 1068

Query:   276 FVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGIL 335
             F S     +  V E    GS V  +TA D D G NG+VT+ I  GNE+  F LD   G+L
Sbjct:  1069 FTS---FPVARVKEDATAGSLVHHITAQDPDEGRNGKVTFRILSGNENMAFMLDETSGLL 1125

Query:   336 SLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANV 395
             +    +   D++ K + VL + A D G P  SSS  + I    V+   P F    Y A+V
Sbjct:  1126 TTTHPL---DYEIKTQHVLTLLALDDGTPTLSSSQTLTITVLDVNDEAPVFKQHLYEASV 1182

Query:   396 SEDAIPGTYIIKVVA 410
              E+  PG ++ +V A
Sbjct:  1183 KENENPGEFVTRVEA 1197

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E2RR85 FAT4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 442 (160.7 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
 Identities = 117/365 (32%), Positives = 184/365 (50%)

Query:    64 EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQL 123
             ++ E++ IG  V +V +TDS        + YS+T    T++ G F I  ++GS+ +A++L
Sbjct:  1323 DVLENMRIGELVSSVTATDSDS-GDNADLHYSITG---TNNHGTFSISPNTGSIFLAKKL 1378

Query:   124 DRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVG 183
             D ET   YKL + A D      P+SS +++ I + D NDN P +    +   + E+  +G
Sbjct:  1379 DFETQSLYKLNITAKDQGRP--PRSSTMSVVIHVRDFNDNPPSFPPGDIFKSIVENIPIG 1436

Query:   184 STIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVV 243
             +++ + TA D D   NG+L Y +V+Q P GNHF +D + GT+     +D E    F L V
Sbjct:  1437 TSVISVTAHDPDADINGQLSYAIVQQMPRGNHFGIDEVKGTIYTNAEIDREFANLFELTV 1496

Query:   244 KVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAV 303
             K  DQA  I  R        ++V DLNDN P+F+S    + +       +GS +T + A 
Sbjct:  1497 KANDQAVPIETRRYALKNVTILVTDLNDNVPMFISQ---NALAADPAAVIGSVLTTIMAA 1553

Query:   304 DQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGI 363
             D D G NG V Y I  G+ D  F +D   G L +A  +      S+    L ++A+D G 
Sbjct:  1554 DPDEGANGEVEYEIINGDTDT-FIVDRYSGDLRVASALVP----SQLIYNLIVSATDLGP 1608

Query:   364 PPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTE 423
               + S+  + I+ + +    P F  P Y   + E    GT +I + A SP   G+    E
Sbjct:  1609 ERRKSTTELTIILQGLDG--PVFTQPKYITILKEGEPIGTNVISIEAASPR--GSEAPVE 1664

Query:   424 VFLVS 428
              ++VS
Sbjct:  1665 YYIVS 1669

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	570
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	3e-23
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	6e-20
smart00112	81	smart00112, CA, Cadherin repeats	4e-19
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	4e-18
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	4e-17
smart00112	81	smart00112, CA, Cadherin repeats	4e-17
pfam00028	92	pfam00028, Cadherin, Cadherin domain	2e-16
smart00112	81	smart00112, CA, Cadherin repeats	5e-15
pfam00028	92	pfam00028, Cadherin, Cadherin domain	6e-15
smart00112	81	smart00112, CA, Cadherin repeats	2e-12
pfam00028	92	pfam00028, Cadherin, Cadherin domain	2e-12
pfam00028	92	pfam00028, Cadherin, Cadherin domain	8e-11

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 171 PLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQP 230
              + V E+   G+ +   +ATD D G NGE+ Y +V    E   FS+D  TG +T  +P
Sbjct: 1   SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSG-NEDGLFSIDPSTGEITTAKP 59

Query: 231 LDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDN 272
           LD E  +S+ L V  TD        LS++ T  + V D+NDN
Sbjct: 60  LDREEQSSYTLTVTATDGG---GPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 84.3 bits (209), Expect = 6e-20
 Identities = 44/108 (40%), Positives = 53/108 (49%), Gaps = 15/108 (13%)

Query: 424 VFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN--LTYMIPAGVADDMFKIDAE 481
              V E+A PGT ++ V A  P           D SG N  +TY I +G  D +F ID  
Sbjct: 3   EVSVPENAPPGTVVLTVSATDP-----------D-SGENGEVTYSIVSGNEDGLFSIDPS 50

Query: 482 TGVVTLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILDVNDN 528
           TG +T A+ LDRE    Y L V  TD        T  V IT+LDVNDN
Sbjct: 51  TGEITTAKPLDREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 81.6 bits (202), Expect = 4e-19
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 190 TATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQA 249
           +ATDAD G NG++ Y ++    +   FS+D  TG +T  +PLD E    + L V+ TD  
Sbjct: 1   SATDADSGENGKVTYSILSG-NDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGG 59

Query: 250 ANISERLSTSLTARVVVKDLNDNAP 274
                 LS++ T  + V D+NDNAP
Sbjct: 60  ---GPPLSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 79.3 bits (196), Expect = 4e-18
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEY 344
           + V E    G+ V  ++A D DSG+NG VTY I  GNED  F +D   G ++ A+ +   
Sbjct: 4   VSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLD-R 62

Query: 345 DHQSKFRAVLNITASDHGIPPKSSSLVINI 374
           + QS +   L +TA+D G PP SS+  + I
Sbjct: 63  EEQSSYT--LTVTATDGGGPPLSSTATVTI 90

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQL 123
            + E+ P G  V  V +TD       G V YS+ S +       F ID S+G +  A+ L
Sbjct: 5   SVPENAPPGTVVLTVSATDP-DSGENGEVTYSIVSGNEDGL---FSIDPSTGEITTAKPL 60

Query: 124 DRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDN 163
           DRE    Y L V A D      P SS   + I ++DVNDN
Sbjct: 61  DREEQSSYTLTVTATD--GGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 75.8 bits (187), Expect = 4e-17
 Identities = 33/70 (47%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 462 NLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS-KSGDYDTTNVFI 520
            +TY I +G  D +F ID ETG +T  + LDRE   +Y L V  TD        T  V I
Sbjct: 12  KVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTI 71

Query: 521 TILDVNDNAP 530
           T+LDVNDNAP
Sbjct: 72  TVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEY 344
             V E   VG+ V  +TA D D G NGR+ Y I GG     F +D D G LS  + + + 
Sbjct: 3   ASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPL-DR 61

Query: 345 DHQSKFRAVLNITASDHGIPPKSSSLVINI 374
           +   ++   L + A+D G PP SS+  + I
Sbjct: 62  ESIGEYE--LTVLATDSGGPPLSSTTTVTI 89

Length = 92

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 70.1 bits (172), Expect = 5e-15
 Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 90  GHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
           G V YS+ S +       F ID  +G +   + LDRE  PEY L V A D      P SS
Sbjct: 11  GKVTYSILSGNDDGL---FSIDPETGEITTTKPLDREEQPEYTLTVEATDGGG--PPLSS 65

Query: 150 AVAIKIEIVDVNDNAP 165
              + I ++DVNDNAP
Sbjct: 66  TATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 70.0 bits (172), Expect = 6e-15
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 173 TIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLD 232
           +  V E+  VG+ +   TATDAD G NG + Y ++     G  F +D  TG L+  +PLD
Sbjct: 2   SASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGG-GPGGWFRIDPDTGDLSTTKPLD 60

Query: 233 YETLTSFILVVKVTDQAANISERLSTSLTARVVV 266
            E++  + L V  TD        LS++ T  + V
Sbjct: 61  RESIGEYELTVLATDSG---GPPLSSTTTVTITV 91

Length = 92

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 301 TAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASD 360
           +A D DSG+NG+VTY I  GN+D  F +D + G ++  + + + + Q ++   L + A+D
Sbjct: 1   SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPL-DREEQPEYT--LTVEATD 57

Query: 361 HGIPPKSSSLVINI 374
            G PP SS+  + I
Sbjct: 58  GGGPPLSSTATVTI 71

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 424 VFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETG 483
              V E+A  GT ++ V A                    + Y I  G     F+ID +TG
Sbjct: 2   SASVPENAPVGTEVLTVTATDADLGP----------NGRIFYSILGGGPGGWFRIDPDTG 51

Query: 484 VVTLARSLDRETVDQYNLVVHVTDS-KSGDYDTTNVFITIL 523
            ++  + LDRE++ +Y L V  TDS       TT V IT+L
Sbjct: 52  DLSTTKPLDRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92

Length = 92

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQL 123
            + E+ P+G  V  V +TD+      G + YS+    P      F ID  +G L   + L
Sbjct: 4   SVPENAPVGTEVLTVTATDAD-LGPNGRIFYSILGGGPGGW---FRIDPDTGDLSTTKPL 59

Query: 124 DRETCPEYKLEVRALDTSTSSNPQSSAVAIKIE 156
           DRE+  EY+L V A D+       ++ V I + 
Sbjct: 60  DRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	570
KOG4289|consensus	2531		100.0
KOG4289|consensus	2531		100.0
KOG1219|consensus	4289		100.0
KOG1219|consensus	4289		100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.97
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.96
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.59
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.59
KOG1834|consensus	952		99.58
KOG1834|consensus	952		99.54
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.47
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.46
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.35
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	97.24
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	96.93
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	96.61
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	96.32
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	96.17
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	96.1
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	96.07
PF13750	158	Big_3_3: Bacterial Ig-like domain (group 3)	95.81
PF13750	158	Big_3_3: Bacterial Ig-like domain (group 3)	95.46
TIGR00845	928	caca sodium/calcium exchanger 1. This model is spe	92.2
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	92.1
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	87.22
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	86.99
TIGR03660	137	T1SS_rpt_143 T1SS-143 repeat domain. This model re	85.62
KOG3597|consensus	442		84.72
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	82.22
PF13753	317	SWM_repeat: Putative flagellar system-associated r	81.93

>KOG4289|consensus

Probab=100.00  E-value=9.3e-74  Score=607.53  Aligned_cols=513  Identities=29%  Similarity=0.456  Sum_probs=458.6

Q ss_pred             eCCCceeEEEEE-EEEEccCCCCcEEEEecCCCcccccccccccceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEE
Q psy8639          19 STPNMVSRCKFK-KYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLT   97 (570)
Q Consensus        19 ~~p~~~~~~~~~-~v~d~nd~~p~~~~~~~~~~~~~p~f~~~~~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~   97 (570)
                      |.|..++.+.+. .|+|+|||.|              .|++..|..++.||.++|+.|.++.|+|.|.+ +|+.++|++ 
T Consensus       245 ~~P~~SAtttv~V~V~D~nDhsP--------------vFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp-~Nani~Yrl-  308 (2531)
T KOG4289|consen  245 GDPRRSATTTVTVLVLDTNDHSP--------------VFEQDEYREELRENLEVGYEVLTVRATDGDSP-PNANIRYRL-  308 (2531)
T ss_pred             CCCcccceeEEEEEEeecCCCCc--------------ccchhHHHHHHhhccccCceEEEEEeccCCCC-CCCceEEEe-
Confidence            568888888886 9999999888              59999999999999999999999999999999 899999999 


Q ss_pred             ecCCCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEe
Q psy8639          98 SLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVN  177 (570)
Q Consensus        98 ~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~  177 (570)
                       ..+ +....|+|++++|.|.++.+||||+...|+|.|.|+|.+..+++.  ++.|.|+|.|+|||+|+|..+.|.+.|.
T Consensus       309 -~eg-~~~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~--Ta~V~itV~D~NDNaPqFse~~Yvvqv~  384 (2531)
T KOG4289|consen  309 -LEG-NAKNVFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPPGPR--TAMVEITVEDENDNAPQFSEKRYVVQVR  384 (2531)
T ss_pred             -cCC-CccceeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCCCCc--eEEEEEEEEecCCCCccccccceEEEec
Confidence             444 778999999999999999999999999999999999987744433  8999999999999999999999999999


Q ss_pred             CCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCce
Q psy8639         178 EDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLS  257 (570)
Q Consensus       178 E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~  257 (570)
                      |+.-+++.|.++.|+|.|.|.|+.+.|+|.++.. .+.|.||..+|+|.+..+||+|.. .|++.|+|.|++.|+   ++
T Consensus       385 Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~-~G~f~id~~tGel~vv~plD~e~~-~ytl~IrAqDggrPp---Ls  459 (2531)
T KOG4289|consen  385 EDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNG-RGQFYIDSLTGELDVVEPLDFENS-EYTLRIRAQDGGRPP---LS  459 (2531)
T ss_pred             ccCCCCceEEEEEecccCCCcCceEEEEeeccCc-cccEEEecccceEEEeccccccCC-eeEEEEEcccCCCCC---cc
Confidence            9999999999999999999999999999999864 689999999999999999999998 999999999999886   88


Q ss_pred             eEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEE
Q psy8639         258 TSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSL  337 (570)
Q Consensus       258 ~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~  337 (570)
                      .+.-+.|+|.|+|||+|.|....  ..++|.|+.+.|..+..+.|.|.|.|+|+.+.|++.+   .+.|.|+..+|+|++
T Consensus       460 n~sgl~iqVlDINDhaPifvstp--fq~tvlEnv~lg~~v~~vqaidadsg~na~l~y~laG---~~pf~I~~~SG~Itv  534 (2531)
T KOG4289|consen  460 NTSGLVIQVLDINDHAPIFVSTP--FQATVLENVPLGYLVCHVQAIDADSGENARLHYSLAG---VGPFQINNGSGWITV  534 (2531)
T ss_pred             CCCceEEEEEecCCCCceeEech--hhhhhhhcccccceEEEEecccCCCCcccceeeeecc---CCCeeEecCCceEEE
Confidence            88888899999999999999886  6789999999999999999999999999999999985   468999999999999


Q ss_pred             EeecCcccccceeEEEEEEEEEECCcCCceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCC
Q psy8639         338 ARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYG  417 (570)
Q Consensus       338 ~~~ld~~d~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~  417 (570)
                      .+.||   ||+...|.|.|+|+|+|.|+.++.++|.|++.|+|||.|.|.++.|++.+.|+.+.|+.|.+++|.|.|.+.
T Consensus       535 tk~ld---rEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl~inED~pvgsSI~tvtAvD~d~~s  611 (2531)
T KOG4289|consen  535 TKELD---RETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTLRINEDAPVGSSIVTVTAVDRDANS  611 (2531)
T ss_pred             eeccc---ccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEEEecCCccccceEEEEEEecccccc
Confidence            99999   999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CceEE-------EEEEeeccCC--------------CceEEEEEEeeC---CCcee-----------------EEEE---
Q psy8639         418 NYVYT-------EVFLVSEDAI--------------PGTYIIKVVARS---PSTYV-----------------YHMY---  453 (570)
Q Consensus       418 ~~~~~-------~~~~v~~~~~--------------~~~~~~~~~~~~---~~~~~-----------------~~~~---  453 (570)
                      .+.|.       ..|.++....              .+.|.+.|-+++   .+...                 .||+   
T Consensus       612 ~ityqi~g~ntrn~Fsi~si~g~Glitlalp~dkKqe~~~vl~vtAtDg~l~d~~~V~v~I~danThrpvFqs~pfTvsI  691 (2531)
T KOG4289|consen  612 VITYQITGGNTRNRFSISSIGGGGLITLALPLDKKQERQYVLAVTATDGTLQDTCSVNVNITDANTHRPVFQSSPFTVSI  691 (2531)
T ss_pred             ceEEEecCCcccccceeeccCCcceEEeecchhhcccceEEEEEEecCCccccceEEEEEeeecccCCcccccCCeeEee
Confidence            87773       3344443321              122333333333   11111                 1111   


Q ss_pred             ----------------EeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCC-CCeeEE
Q psy8639         454 ----------------LISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS-GDYDTT  516 (570)
Q Consensus       454 ----------------~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~-~~~~~~  516 (570)
                                      -.+-++|..++|-+.    ...|+||+++|.+++...||||.+-.|.+.|+|.|.+. +..++.
T Consensus       692 ~e~rP~G~tvvtlsasd~D~geNARI~y~le----d~~Frid~dsg~i~t~~~ld~edqvtytl~itA~D~~~pq~adtt  767 (2531)
T KOG4289|consen  692 NEDRPLGTTVVTLSASDEDTGENARITYILE----DEAFRIDPDSGAIYTQAELDYEDQVTYTLAITARDNGIPQKADTT  767 (2531)
T ss_pred             ccCCcCCceeEEEecccCCCCccceEEEEec----ccceeecCCCCceEEeeeeecccceeeEeeeeecCCCCCCcCccE
Confidence                            112477888999553    34599999999999999999999999999999999998 678899


Q ss_pred             EEEEEEEecCCCCcccccCCeeeEEecCCCCCC-eEEEEEEEeCCCCCcceecC
Q psy8639         517 NVFITILDVNDNAPEFKSGSCYPITIPENSEAA-NVHTFIATDFGNFHKSFIDS  569 (570)
Q Consensus       517 ~v~I~V~dvNd~~P~f~~~~~~~~~v~E~~~~~-~v~~i~a~D~D~~~~~~~~~  569 (570)
                      +|.|.|.|+|||+|+|. .+.|.++|.|+.+.+ .|++++|||.|.|.|+..|+
T Consensus       768 tveV~v~diNDnaPqf~-assyt~sV~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y  820 (2531)
T KOG4289|consen  768 TVEVLVNDINDNAPQFL-ASSYTGSVFEDAPVFTSVLQVSATDADSGPNGRVYY  820 (2531)
T ss_pred             EEEEEeecccccCcccc-hhhceeEeecCCCCcceEEEEEEeccCCCCCceEEE
Confidence            99999999999999999 899999999999999 89999999999999999875

>KOG4289|consensus

Probab=100.00  E-value=3.5e-70  Score=580.34  Aligned_cols=450  Identities=29%  Similarity=0.457  Sum_probs=427.9

Q ss_pred             ccccccccccceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeE
Q psy8639          52 SRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEY  131 (570)
Q Consensus        52 ~~p~f~~~~~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~  131 (570)
                      ++++|.++.|...++||.|+||.|+.+.|.|+|    .+.+.|++..+...-..++|+||+.+|.|++++.||||.+..+
T Consensus       160 ~~~~Fqq~~Yq~~lpEn~pagT~iasv~A~~~~----a~rl~Ysm~al~dsRS~~lFslD~~sG~irta~~lDREt~e~H  235 (2531)
T KOG4289|consen  160 NAVQFQQPNYQKELPENEPAGTIIASVKASDPD----AGRLYYSMVALFDSRSQNLFSLDPMSGAIRTAKSLDRETKETH  235 (2531)
T ss_pred             CCccCCCcchhccCcCCCCCCceeEEEEecCCC----cCceEEEeeeccchhccccEeeccccccchhhhhhhhhhhhee
Confidence            567999999999999999999999999999998    3689999966555566789999999999999999999999999


Q ss_pred             EEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCC
Q psy8639         132 KLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYP  211 (570)
Q Consensus       132 ~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~  211 (570)
                      -|+|+|.|.+.  |..|++.+++|.|.|+|||.|+|.+..|...+.||.+.|..|.+++|+|.|.++|+.|.|++.++..
T Consensus       236 vlrVtA~d~~~--P~~SAtttv~V~V~D~nDhsPvFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~  313 (2531)
T KOG4289|consen  236 VLRVTAQDHGD--PRRSATTTVTVLVLDTNDHSPVFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNA  313 (2531)
T ss_pred             EEEEEeeecCC--CcccceeEEEEEEeecCCCCcccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCc
Confidence            99999999765  8899999999999999999999999999999999999999999999999999999999999999854


Q ss_pred             CCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccC
Q psy8639         212 EGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQT  291 (570)
Q Consensus       212 ~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~  291 (570)
                       ...|.||+.+|.|....+||+|+..+|+|.|.|+|+|.+++++   ++.|.|+|.|.|||+|+|....  |.+.|.|+.
T Consensus       314 -~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~---Ta~V~itV~D~NDNaPqFse~~--Yvvqv~Edv  387 (2531)
T KOG4289|consen  314 -KNVFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPPGPR---TAMVEITVEDENDNAPQFSEKR--YVVQVREDV  387 (2531)
T ss_pred             -cceeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCCCCc---eEEEEEEEEecCCCCccccccc--eEEEecccC
Confidence             6899999999999999999999999999999999999987553   8999999999999999999887  999999999


Q ss_pred             CCCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEECCcCCceeEEE
Q psy8639         292 RVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLV  371 (570)
Q Consensus       292 ~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g~~~~s~~~~  371 (570)
                      .+++++++++|+|.|.|.|+.+.|+|.+++..+.|.|+..||+|.+..+||   +|.. .|++.|.|.|+|.|+++.+.-
T Consensus       388 t~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~tGel~vv~plD---~e~~-~ytl~IrAqDggrPpLsn~sg  463 (2531)
T KOG4289|consen  388 TPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSLTGELDVVEPLD---FENS-EYTLRIRAQDGGRPPLSNTSG  463 (2531)
T ss_pred             CCCceEEEEEecccCCCcCceEEEEeeccCccccEEEecccceEEEecccc---ccCC-eeEEEEEcccCCCCCccCCCc
Confidence            999999999999999999999999999999999999999999999999999   9988 999999999999999999999


Q ss_pred             EEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEE
Q psy8639         372 INILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYH  451 (570)
Q Consensus       372 v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  451 (570)
                      +.|+|.|+||++|.|....+..++.|+.+.|..+..+.|.|.|.                                    
T Consensus       464 l~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidads------------------------------------  507 (2531)
T KOG4289|consen  464 LVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADS------------------------------------  507 (2531)
T ss_pred             eEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCC------------------------------------
Confidence            99999999999999999999999999999999999999999999                                    


Q ss_pred             EEEeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCC-CCeeEEEEEEEEEecCCCCc
Q psy8639         452 MYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS-GDYDTTNVFITILDVNDNAP  530 (570)
Q Consensus       452 ~~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~-~~~~~~~v~I~V~dvNd~~P  530 (570)
                            +.|+.+.|++.+   .+.|.|+..+|+|++.+.||||+...|.|-|.|+|.+. +.+++.+|.|.+.|+|||.|
T Consensus       508 ------g~na~l~y~laG---~~pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP  578 (2531)
T KOG4289|consen  508 ------GENARLHYSLAG---VGPFQINNGSGWITVTKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDP  578 (2531)
T ss_pred             ------Ccccceeeeecc---CCCeeEecCCceEEEeecccccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCC
Confidence                  999999999854   45899999999999999999999999999999999998 68899999999999999999


Q ss_pred             ccccCCeeeEEecCCCCCC-eEEEEEEEeCCCCC
Q psy8639         531 EFKSGSCYPITIPENSEAA-NVHTFIATDFGNFH  563 (570)
Q Consensus       531 ~f~~~~~~~~~v~E~~~~~-~v~~i~a~D~D~~~  563 (570)
                      .|. +..|+..+.|..+.| .|.+++|+|.|...
T Consensus       579 ~Ft-~~eytl~inED~pvgsSI~tvtAvD~d~~s  611 (2531)
T KOG4289|consen  579 TFT-QKEYTLRINEDAPVGSSIVTVTAVDRDANS  611 (2531)
T ss_pred             ccc-cCceEEEecCCccccceEEEEEEecccccc
Confidence            999 889999999999999 89999999999764

>KOG1219|consensus

Probab=100.00  E-value=1.8e-64  Score=551.88  Aligned_cols=487  Identities=30%  Similarity=0.419  Sum_probs=449.0

Q ss_pred             eeeeeeccCceEEeCCC---------------------ceeEEEEE-EEEEccCCCCcEEEEecCCCcccccccccccce
Q psy8639           6 KFKKYLSNNEIFTSTPN---------------------MVSRCKFK-KYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNN   63 (570)
Q Consensus         6 ~~~~~~~~~~~~~~~p~---------------------~~~~~~~~-~v~d~nd~~p~~~~~~~~~~~~~p~f~~~~~~~   63 (570)
                      -|.|+++.|+|-+-.|-                     .++-...+ .|.|.|||+|              .|....|.+
T Consensus       687 ~~~Id~qsg~itvas~ld~~~t~~yiLnvta~D~gtPqkss~r~l~v~vkd~ndn~p--------------~f~e~sy~v  752 (4289)
T KOG1219|consen  687 CFLIDRQSGNITVASPLDNENTEQYILNVTAYDLGTPQKSSWRLLLVFVKDYNDNTP--------------IFVERSYHV  752 (4289)
T ss_pred             EEEEecccceEEEecchhhhhhheeEEEEEEecCCCchhhceeeEEEEEEecccCCc--------------cccccceEE
Confidence            48899999998776654                     22222222 6666666665              699999999


Q ss_pred             eecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEeCCCC
Q psy8639          64 EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTS  143 (570)
Q Consensus        64 ~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D~~g~  143 (570)
                      +|.|+..+|+.|+.+++.|.|.+ +|+.++|+|     .+....|+||+.+|.+.+.+.||||.+..|+|.|+|.|... 
T Consensus       753 tvsedtepgs~Ia~vetnd~D~g-~NG~v~fsL-----~n~sdvfsIdp~tGivv~~~sLdrE~q~~y~l~I~a~dqp~-  825 (4289)
T KOG1219|consen  753 TVSEDTEPGSFIAHVETNDTDGG-NNGMVSFSL-----LNKSDVFSIDPFTGIVVTSKSLDREGQTSYHLKIEARDQPP-  825 (4289)
T ss_pred             EEecCCCCCceEEEEEecccCCC-CCceEEEEe-----cCCcceEEecCcccEEEeccccCcccCceeEEEEEEcCCCC-
Confidence            99999999999999999999999 899999999     24578999999999999999999999999999999999654 


Q ss_pred             CCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCc
Q psy8639         144 SNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTG  223 (570)
Q Consensus       144 ~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G  223 (570)
                       +.+...+.+.|.|.|||||+|.+....+...|+|+.|.|+.+..+.|.|+|.|.+++++|.+..+.-   .+.++..+|
T Consensus       826 -pq~~svv~l~vsvedVndnpPkci~~hsr~kipedlp~gt~~~~l~A~d~diGq~~kvry~l~~~~v---~~rvd~~sG  901 (4289)
T KOG1219|consen  826 -PQLFSVVELDVSVEDVNDNPPKCIIRHSRSKIPEDLPYGTVTWQLVALDPDIGQLGKVRYYLTDDTV---GERVDFPSG  901 (4289)
T ss_pred             -CceEEEEEEEEEEeeccCCCCccccccccccCcccCCCceEEEEhhhcCcccCcCceeEEEEecCcc---ccccccccc
Confidence             6677888999999999999999998889999999999999999999999999999999999998653   459999999


Q ss_pred             EEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCC--CCeeecCCCCeeEEEeccCCCCeEEEEEE
Q psy8639         224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDN--APVFVSPTRGSLIYVSEQTRVGSHVTKMT  301 (570)
Q Consensus       224 ~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~--~P~~~~~~~~~~~~v~E~~~~g~~v~~v~  301 (570)
                      .+.+.++||||..+-|.|.|+|.|++.|.   +++.+.+.|.+.|+|+|  ||.|....  ....|.||++.|+.++++.
T Consensus       902 avfi~~~LDf~k~~fynLsv~a~d~g~p~---lss~chl~Vevldv~enlhpp~F~~~v--~e~~V~EnapiGT~vi~i~  976 (4289)
T KOG1219|consen  902 AVFIGKPLDFEKSDFYNLSVTAVDRGTPI---LSSICHLEVEVLDVNENLHPPEFISFV--TEGHVLENAPIGTIVIRIQ  976 (4289)
T ss_pred             cEEEecccccccccceEEEEEEecCCCcc---eeeeEEEEEEEeccCCCCCCcchheee--eeeeEeecCCcceEEEEEE
Confidence            99999999999999999999999999885   88999999999999987  99998765  5789999999999999999


Q ss_pred             EEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEECCcCCceeEEEEEEEEeeCCC
Q psy8639         302 AVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVST  381 (570)
Q Consensus       302 a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~dvNd  381 (570)
                      |.|.|.|..+.+.|+|..++..+.|+|+..+|.|++.+.||   +|....|.|+|.|+|.|.+++++...+.|.|+|+||
T Consensus       977 A~dedsgldg~l~Y~I~~gdg~g~FsId~~tG~irTl~~lD---rE~ks~YwltveA~D~gt~~~ssv~~vyI~ieDvND 1053 (4289)
T KOG1219|consen  977 ARDEDSGLDGELSYKIRTGDGDGIFSIDSTTGSIRTLKALD---REKKSSYWLTVEAKDLGTVPLSSVCEVYIEIEDVND 1053 (4289)
T ss_pred             EecCCCCccceEEEEEEcCCcceeEEecCCcceEeechhhc---hhhcceEEEEEEEEecCCCccccceeEEEEEEecCC
Confidence            99999999999999999998899999999999999999999   999999999999999999999999999999999999


Q ss_pred             CCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCCc
Q psy8639         382 SLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGY  461 (570)
Q Consensus       382 ~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (570)
                      |+|.|..+-|..+|.|+++.+..|.++.|.|+|.                                          ..++
T Consensus      1054 n~Pq~s~pvy~asI~enSp~~vsivq~ea~D~Ds------------------------------------------ssn~ 1091 (4289)
T KOG1219|consen 1054 NVPQFSSPVYYASISENSPETVSIVQAEANDPDS------------------------------------------SSNQ 1091 (4289)
T ss_pred             CCcccCCceEeeeeccCCCCceEEEEeccCCCCc------------------------------------------ccCc
Confidence            9999999999999999999999999999999998                                          7899


Q ss_pred             eEEEEecCCCCCCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCC-CCeeEEEEEEEEEecCCCCcccccCCeeeE
Q psy8639         462 NLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS-GDYDTTNVFITILDVNDNAPEFKSGSCYPI  540 (570)
Q Consensus       462 ~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~-~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~  540 (570)
                      ++.|.|.+|+..+.|+|++.+|.|+..+.||||++.+|.|+|+++|++. .+++.+-|.|.|+|+|||+|+|. +..+..
T Consensus      1092 kLmykI~sGnyq~FF~Id~~TG~iTt~r~LDRE~qdEHiLeVTi~D~gep~l~s~~rviV~IldvNdnsp~Fl-qk~~~~ 1170 (4289)
T KOG1219|consen 1092 KLMYKITSGNYQGFFQIDPETGLITTIRRLDREKQDEHILEVTIQDNGEPWLCSNQRVIVSILDVNDNSPRFL-QKKTFL 1170 (4289)
T ss_pred             ceEEEEccCCccceEEEccccceeeeehhhcccccccceEEEEEecCCCCccccceEEEEEEeeccCCchhhh-hheeEE
Confidence            9999999999999999999999999999999999999999999999998 57888999999999999999999 889999


Q ss_pred             EecCCCCCCeEEEEEEEeCCCCCcceecC
Q psy8639         541 TIPENSEAANVHTFIATDFGNFHKSFIDS  569 (570)
Q Consensus       541 ~v~E~~~~~~v~~i~a~D~D~~~~~~~~~  569 (570)
                      .|+|.... .+.++.|+|.|+|.|+-|-+
T Consensus      1171 ~v~~r~s~-plyRl~a~d~DeG~narity 1198 (4289)
T KOG1219|consen 1171 RVPERSSP-PLYRLAAQDNDEGNNARITY 1198 (4289)
T ss_pred             EeeeccCC-ceeEEEEEecCCCcceEEEE
Confidence            99998774 78999999999999987754

>KOG1219|consensus

Probab=100.00  E-value=2.4e-61  Score=527.59  Aligned_cols=469  Identities=30%  Similarity=0.404  Sum_probs=431.9

Q ss_pred             ccCCCCcEEEEecCCCcccccccc-cccceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECc
Q psy8639          35 NNEVCPKQIFTSTPNMVSRCKFKK-YLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKS  113 (570)
Q Consensus        35 ~nd~~p~~~~~~~~~~~~~p~f~~-~~~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~  113 (570)
                      -|+..|.+.-...  ...-|.|.. -++-..|+|+.|+|+.++.+.|+|+|+| -|+.++|.|   .+++....|.|+.+
T Consensus       620 ~~~~~p~Ilq~~e--~~~fPqf~s~fP~iI~v~Edvpigt~la~L~atD~Dtg-fng~l~yvI---~dgne~~~~~Id~q  693 (4289)
T KOG1219|consen  620 GNEHEPNILQRFE--NKHFPQFPSDFPFIIVVPEDVPIGTTLAILSATDSDTG-FNGKLVYVI---EDGNESICFLIDRQ  693 (4289)
T ss_pred             ccccChhHhhhhc--cccCccccccCCceEEccccCCCCceEEEEeccCCCCC-cCceEEEEE---eCCccceEEEEecc
Confidence            4555665443321  123367777 5677889999999999999999999999 899999999   33467899999999


Q ss_pred             ccEEEECCcCCCCCCCeEEEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEec
Q psy8639         114 SGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATD  193 (570)
Q Consensus       114 ~G~l~~~~~LD~E~~~~~~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D  193 (570)
                      +|.|.+.++||+|....|.|.|+|.|.+.  |..+++..+.|.|.|.|||+|.|.+..|.+.|.|+..+|+.++.+.|.|
T Consensus       694 sg~itvas~ld~~~t~~yiLnvta~D~gt--Pqkss~r~l~v~vkd~ndn~p~f~e~sy~vtvsedtepgs~Ia~vetnd  771 (4289)
T KOG1219|consen  694 SGNITVASPLDNENTEQYILNVTAYDLGT--PQKSSWRLLLVFVKDYNDNTPIFVERSYHVTVSEDTEPGSFIAHVETND  771 (4289)
T ss_pred             cceEEEecchhhhhhheeEEEEEEecCCC--chhhceeeEEEEEEecccCCccccccceEEEEecCCCCCceEEEEEecc
Confidence            99999999999999999999999999766  7888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCC
Q psy8639         194 ADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNA  273 (570)
Q Consensus       194 ~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~  273 (570)
                      .|.|+||.++|+|...   ++.|+||+.+|.+.+.++||+|.+.+|.|.|.|+|++.|.   +.+.+.+.|.|+|||||+
T Consensus       772 ~D~g~NG~v~fsL~n~---sdvfsIdp~tGivv~~~sLdrE~q~~y~l~I~a~dqp~pq---~~svv~l~vsvedVndnp  845 (4289)
T KOG1219|consen  772 TDGGNNGMVSFSLLNK---SDVFSIDPFTGIVVTSKSLDREGQTSYHLKIEARDQPPPQ---LFSVVELDVSVEDVNDNP  845 (4289)
T ss_pred             cCCCCCceEEEEecCC---cceEEecCcccEEEeccccCcccCceeEEEEEEcCCCCCc---eEEEEEEEEEEeeccCCC
Confidence            9999999999999873   5799999999999999999999999999999999998754   788899999999999999


Q ss_pred             CeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEE
Q psy8639         274 PVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAV  353 (570)
Q Consensus       274 P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~  353 (570)
                      |.+....  +...|.|+.|.|+++..+.|.|+|.|.+++++|.+..+.  -.+.++.-+|.+.+-++||   ++....|+
T Consensus       846 Pkci~~h--sr~kipedlp~gt~~~~l~A~d~diGq~~kvry~l~~~~--v~~rvd~~sGavfi~~~LD---f~k~~fyn  918 (4289)
T KOG1219|consen  846 PKCIIRH--SRSKIPEDLPYGTVTWQLVALDPDIGQLGKVRYYLTDDT--VGERVDFPSGAVFIGKPLD---FEKSDFYN  918 (4289)
T ss_pred             Ccccccc--ccccCcccCCCceEEEEhhhcCcccCcCceeEEEEecCc--cccccccccccEEEecccc---cccccceE
Confidence            9998877  789999999999999999999999999999999999863  3358998899999999999   99999999


Q ss_pred             EEEEEEECCcCCceeEEEEEEEEeeCCCC--CCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccC
Q psy8639         354 LNITASDHGIPPKSSSLVINILSETVSTS--LPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDA  431 (570)
Q Consensus       354 l~V~a~D~g~~~~s~~~~v~I~V~dvNd~--~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~  431 (570)
                      |.|+|.|+|.|.+++.+++.|.+.|+|.|  ||.|....-.+.|.||++.|+.++.|.|.|.|.                
T Consensus       919 Lsv~a~d~g~p~lss~chl~Vevldv~enlhpp~F~~~v~e~~V~EnapiGT~vi~i~A~deds----------------  982 (4289)
T KOG1219|consen  919 LSVTAVDRGTPILSSICHLEVEVLDVNENLHPPEFISFVTEGHVLENAPIGTIVIRIQARDEDS----------------  982 (4289)
T ss_pred             EEEEEecCCCcceeeeEEEEEEEeccCCCCCCcchheeeeeeeEeecCCcceEEEEEEEecCCC----------------
Confidence            99999999999999999999999999876  999988778899999999999999999999999                


Q ss_pred             CCceEEEEEEeeCCCceeEEEEEeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCC-
Q psy8639         432 IPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS-  510 (570)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~-  510 (570)
                                                |..+.+.|+|..|...+.|+||..+|.|++...||||....|-|+|.|+|.+. 
T Consensus       983 --------------------------gldg~l~Y~I~~gdg~g~FsId~~tG~irTl~~lDrE~ks~YwltveA~D~gt~ 1036 (4289)
T KOG1219|consen  983 --------------------------GLDGELSYKIRTGDGDGIFSIDSTTGSIRTLKALDREKKSSYWLTVEAKDLGTV 1036 (4289)
T ss_pred             --------------------------CccceEEEEEEcCCcceeEEecCCcceEeechhhchhhcceEEEEEEEEecCCC
Confidence                                      99999999999998899999999999999999999999999999999999999 


Q ss_pred             CCeeEEEEEEEEEecCCCCcccccCCeeeEEecCCCCCC-eEEEEEEEeCCCCCccee
Q psy8639         511 GDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAA-NVHTFIATDFGNFHKSFI  567 (570)
Q Consensus       511 ~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~~v~E~~~~~-~v~~i~a~D~D~~~~~~~  567 (570)
                      ++++-..+.|.|.|+|||+|+|. +..|..+|.|+++.+ .|.++.|.|+|+..|+.+
T Consensus      1037 ~~ssv~~vyI~ieDvNDn~Pq~s-~pvy~asI~enSp~~vsivq~ea~D~Dsssn~kL 1093 (4289)
T KOG1219|consen 1037 PLSSVCEVYIEIEDVNDNVPQFS-SPVYYASISENSPETVSIVQAEANDPDSSSNQKL 1093 (4289)
T ss_pred             ccccceeEEEEEEecCCCCcccC-CceEeeeeccCCCCceEEEEeccCCCCcccCcce
Confidence            88899999999999999999999 888999999999999 789999999997776654

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.97  E-value=8.9e-28  Score=227.20  Aligned_cols=198  Identities=36%  Similarity=0.540  Sum_probs=178.3

Q ss_pred             cceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEeC
Q psy8639          61 SNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDT  140 (570)
Q Consensus        61 ~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D~  140 (570)
                      |...|.|+++.|+.++++.|.|+|.+ .++.++|+|.+  + ...++|.|++.+|.|++++.||||....|.|.|+|+|.
T Consensus         2 ~~~~i~En~~~g~~v~~~~a~D~D~~-~~~~~~y~i~~--~-~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~   77 (199)
T cd00031           2 YSVSVPENAPPGTVVGTVSATDPDSG-ENGRVTYSILG--G-NEDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDG   77 (199)
T ss_pred             eEEEEeCCCCCCCEEEEEEEECCCCC-CCceEEEEEeC--C-CCcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEEC
Confidence            66789999999999999999999987 47999999933  2 33379999999999999999999999999999999996


Q ss_pred             CCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeC
Q psy8639         141 STSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDH  220 (570)
Q Consensus       141 ~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~  220 (570)
                      ++  +..+....++|.|.|+||++|.|....+.+.|.|+.+.|+.++++.|+|.|.+.++.++|+|..+.. .+.|.|++
T Consensus        78 g~--~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~~-~~~f~i~~  154 (199)
T cd00031          78 GG--PPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSILSGND-KELFSIDP  154 (199)
T ss_pred             Cc--CcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCCC-CCEEEEeC
Confidence            44  4456899999999999999999998899999999999999999999999998888999999998754 47999999


Q ss_pred             CCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         221 LTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       221 ~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      .+|.|.+.+.||+|....|.|.|.|+|.+.+.   ++.+..++|.|.|
T Consensus       155 ~~G~i~~~~~ld~e~~~~~~l~v~a~D~~~~~---~~~~~~i~i~v~d  199 (199)
T cd00031         155 NTGIITLAKPLDREEKSSYELTVVATDGGGPP---LSSTATVTVTVLD  199 (199)
T ss_pred             CceEEEeCCccCCccCceEEEEEEEEECCCCC---ceeEEEEEEEEEC
Confidence            99999999999999999999999999998632   7888888888865

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.96  E-value=2.6e-27  Score=224.01  Aligned_cols=197  Identities=38%  Similarity=0.573  Sum_probs=183.9

Q ss_pred             eeEEEeccCCCCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEECC
Q psy8639         283 SLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHG  362 (570)
Q Consensus       283 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g  362 (570)
                      +.+.+.|+++.|+.++++.|.|+|.+.+..++|+|..+....+|.|++.+|.|++.+.||   ||....|.|.|.|+|.|
T Consensus         2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD---~e~~~~~~l~v~a~D~g   78 (199)
T cd00031           2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLD---REEQSEYTLTVVASDGG   78 (199)
T ss_pred             eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCC---CcCCceEEEEEEEEECC
Confidence            678999999999999999999999988889999999886668999999999999999999   99999999999999988


Q ss_pred             cCCceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEe
Q psy8639         363 IPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVA  442 (570)
Q Consensus       363 ~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~  442 (570)
                      .|.+++...++|.|.|+||++|.|....+...+.|+.++|+.++++.|+|+|.                           
T Consensus        79 ~~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~---------------------------  131 (199)
T cd00031          79 GPPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADS---------------------------  131 (199)
T ss_pred             cCcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCC---------------------------
Confidence            88777999999999999999999998899999999999999999999999998                           


Q ss_pred             eCCCceeEEEEEeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCC-CCeeEEEEEEE
Q psy8639         443 RSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS-GDYDTTNVFIT  521 (570)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~-~~~~~~~v~I~  521 (570)
                                     +.++.++|+|..+...+.|.|++.+|.|++.+.||||....|.|.|.|+|.+. +++.+..++|+
T Consensus       132 ---------------~~~~~~~y~l~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~  196 (199)
T cd00031         132 ---------------GENAKLTYSILSGNDKELFSIDPNTGIITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVT  196 (199)
T ss_pred             ---------------CCCccEEEEEeCCCCCCEEEEeCCceEEEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEE
Confidence                           77889999998876568999999999999999999999999999999999985 57888889998


Q ss_pred             EEe
Q psy8639         522 ILD  524 (570)
Q Consensus       522 V~d  524 (570)
                      |.|
T Consensus       197 v~d  199 (199)
T cd00031         197 VLD  199 (199)
T ss_pred             EEC
Confidence            875

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.59  E-value=2.3e-14  Score=117.53  Aligned_cols=92  Identities=35%  Similarity=0.524  Sum_probs=87.9

Q ss_pred             eeEEEeccCCCCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEEC-
Q psy8639         283 SLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDH-  361 (570)
Q Consensus       283 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~-  361 (570)
                      |.+.|.|+++.|+.++++.|.|+|.+.++.+.|+|..++...+|.|++.+|.|++.+.||   ||....|.|.|.|+|. 
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD---~E~~~~y~l~v~a~D~~   77 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLD---RETQSSYQLTVRATDSG   77 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSC---TTTTSEEEEEEEEEETT
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecC---cccCCEEEEEEEEEECC
Confidence            578999999999999999999999999999999999997799999999999999999999   9999999999999999 


Q ss_pred             CcCCceeEEEEEEEEe
Q psy8639         362 GIPPKSSSLVINILSE  377 (570)
Q Consensus       362 g~~~~s~~~~v~I~V~  377 (570)
                      +.|++++.++|.|.|+
T Consensus        78 ~~~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   78 GSPPLSSTATVTINVL   93 (93)
T ss_dssp             TSSEEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEEEEEC
Confidence            8999999999999884

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.59  E-value=2.9e-14  Score=116.95  Aligned_cols=91  Identities=41%  Similarity=0.580  Sum_probs=84.9

Q ss_pred             eEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCCceEEEEecCC
Q psy8639         391 YHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAG  470 (570)
Q Consensus       391 ~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~  470 (570)
                      |++.|+|++++|+.++++.|.|+|.                                          +.++.+.|+|..+
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~------------------------------------------~~n~~i~y~i~~~   38 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDS------------------------------------------GPNSQITYSILGG   38 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESST------------------------------------------STTSSEEEEEEET
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCC------------------------------------------CCCceEEEEEecC
Confidence            6889999999999999999999998                                          8899999999998


Q ss_pred             CCCCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeC-CC-CCeeEEEEEEEEE
Q psy8639         471 VADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS-KS-GDYDTTNVFITIL  523 (570)
Q Consensus       471 ~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~-~~-~~~~~~~v~I~V~  523 (570)
                      ...+.|+|++.+|.|++.+.||||....|.|.|.|+|. +. ++++.++|+|+|+
T Consensus        39 ~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   39 NPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSPPLSSTATVTINVL   93 (93)
T ss_dssp             TSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSSEEEEEEEEEEEEE
T ss_pred             cccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCCCCEEEEEEEEEEC
Confidence            87899999999999999999999999999999999999 44 5778888888885

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>KOG1834|consensus

Probab=99.58  E-value=1.1e-13  Score=141.13  Aligned_cols=204  Identities=21%  Similarity=0.256  Sum_probs=154.8

Q ss_pred             ccccccceeecCCCCCCeEEEEEEEEcCCCCC--CCceEEEEEEecCCCCCCCceEEECccc--EEEECCcCCCCCCCeE
Q psy8639          56 FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRA--GGGHVMYSLTSLSPTDHSGAFDIDKSSG--SLVVARQLDRETCPEY  131 (570)
Q Consensus        56 f~~~~~~~~v~E~~~~gt~v~~l~a~D~D~~~--~~~~~~ysi~~~~~~~~~~~F~id~~~G--~l~~~~~LD~E~~~~~  131 (570)
                      |....|.+-|.||-..-.....+.|.|.|.+-  .+..--|.|.+  +.-+-..--+|..+|  .|+.+.+||-|.+..|
T Consensus        32 wie~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhg--q~vPFdavVvdK~TGegvlRaK~~lDCelqkey  109 (952)
T KOG1834|consen   32 WIEEEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHG--QPVPFDAVVVDKYTGEGVLRAKEPLDCELQKEY  109 (952)
T ss_pred             ccccceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecC--CCCCceEEEEeccCCceEEeecCcccccccccc
Confidence            56677899999997654555558888988641  22334566622  211222233465554  7888899999999999


Q ss_pred             EEEEEEEeCCCCC----CCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCC-CCce-EEEE
Q psy8639         132 KLEVRALDTSTSS----NPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG-SNGE-LRYG  205 (570)
Q Consensus       132 ~l~v~a~D~~g~~----~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g-~~~~-~~y~  205 (570)
                      +|+|+|+|.+.++    -..|-.++|.|.|.|+|+.+|+|..+.|.+.|.|+. .-..|+++.|.|.|-+ .+++ ..|.
T Consensus       110 tf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK-~yd~il~veAiD~DCspq~sqIC~YE  188 (952)
T KOG1834|consen  110 TFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGK-VYDSILRVEAIDKDCSPQYSQICEYE  188 (952)
T ss_pred             eEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecce-eeeeeEEEEeecCCCCCcccceeEEE
Confidence            9999999976532    145667889999999999999999999999999996 5678999999999944 4444 5788


Q ss_pred             EEecCCCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeC
Q psy8639         206 LVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDL  269 (570)
Q Consensus       206 l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dv  269 (570)
                      |...   .-.|.||. .|.|+.+.+|.|....+|.|+|.|.|.+-..   ......|+|.|.+.
T Consensus       189 I~t~---d~PFaIdn-~G~irnTekLny~ke~~Y~ltVtAyDCg~kr---aa~d~lV~v~Vkp~  245 (952)
T KOG1834|consen  189 ITTP---DVPFAIDN-DGNIRNTEKLNYTKEHQYKLTVTAYDCGKKR---AASDSLVTVHVKPT  245 (952)
T ss_pred             ecCC---CCceEEcC-CCccccccccccccceeEEEEEEEEeccccc---ccCcceEEEEecCc
Confidence            8873   46899986 8999999999999999999999999998632   33346777777653

>KOG1834|consensus

Probab=99.54  E-value=6.7e-13  Score=135.63  Aligned_cols=221  Identities=23%  Similarity=0.255  Sum_probs=170.4

Q ss_pred             EEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCC---CceEEEEEEecCCCCCcEEEeCCC--cEEEEcc
Q psy8639         155 IEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGLVRQYPEGNHFSVDHLT--GTLTLLQ  229 (570)
Q Consensus       155 I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~---~~~~~y~l~~~~~~~~~F~Id~~~--G~i~~~~  229 (570)
                      ...-.+|-+.|.. ...|...|.||-..-.....+.|.|.|...   ..-..|.|.++.-+-....+|..+  |.|+.+.
T Consensus        21 ~~aarankhkpwi-e~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq~vPFdavVvdK~TGegvlRaK~   99 (952)
T KOG1834|consen   21 HHAARANKHKPWI-EEEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQPVPFDAVVVDKYTGEGVLRAKE   99 (952)
T ss_pred             cccccccccCccc-ccceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCCCCCceEEEEeccCCceEEeecC
Confidence            3445667777765 456889999996544444568889988521   124567787754333444557766  5688889


Q ss_pred             cCCccCcceEEEEEEEEECCCCCCC---CceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCC
Q psy8639         230 PLDYETLTSFILVVKVTDQAANISE---RLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQD  306 (570)
Q Consensus       230 ~lD~e~~~~~~l~v~a~D~~~~~~~---~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D  306 (570)
                      +||.|.+..|+|+|+|.|.+..+.+   +.+..++|.|.|.|+|+.+|+|..+.  |.+.|.|+.. -..|+++.|.|.|
T Consensus       100 ~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~--Yka~V~EGK~-yd~il~veAiD~D  176 (952)
T KOG1834|consen  100 PLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPW--YKAHVTEGKV-YDSILRVEAIDKD  176 (952)
T ss_pred             cccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccc--eeeEEeccee-eeeeEEEEeecCC
Confidence            9999999999999999998865433   35778999999999999999999998  8899999875 5678899999999


Q ss_pred             CCC-Ce-EEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEECCcCCceeEEEEEEEEeeCCCCCC
Q psy8639         307 SGD-NG-RVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLP  384 (570)
Q Consensus       307 ~~~-~~-~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~dvNd~~P  384 (570)
                      -++ ++ .+.|.|..  +.-.|.||.+ |.|+.+.+|.   |.....|.|+|+|.|.|.-.....+-|+|.|...  ..|
T Consensus       177 Cspq~sqIC~YEI~t--~d~PFaIdn~-G~irnTekLn---y~ke~~Y~ltVtAyDCg~kraa~d~lV~v~Vkp~--C~p  248 (952)
T KOG1834|consen  177 CSPQYSQICEYEITT--PDVPFAIDND-GNIRNTEKLN---YTKEHQYKLTVTAYDCGKKRAASDSLVTVHVKPT--CKP  248 (952)
T ss_pred             CCCcccceeEEEecC--CCCceEEcCC-Cccccccccc---cccceeEEEEEEEEecccccccCcceEEEEecCc--ccc
Confidence            653 44 55777875  6778999976 9999999999   9999999999999998876555557788888775  455


Q ss_pred             eec
Q psy8639         385 TFL  387 (570)
Q Consensus       385 ~f~  387 (570)
                      .+.
T Consensus       249 gwq  251 (952)
T KOG1834|consen  249 GWQ  251 (952)
T ss_pred             chh
Confidence            443

>smart00112 CA Cadherin repeats

Probab=99.47  E-value=4.3e-13  Score=106.32  Aligned_cols=79  Identities=34%  Similarity=0.590  Sum_probs=73.9

Q ss_pred             EeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEECCcCCceeEEEEEEEEeeCCCC
Q psy8639         303 VDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTS  382 (570)
Q Consensus       303 ~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~dvNd~  382 (570)
                      +|+|.|.++.++|+|..+....+|.|++.+|.|.+.+.||   ||....|.|.|.|+|.|.|.+++.++|.|.|.|+||+
T Consensus         1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD---~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~   77 (79)
T smart00112        1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLD---REEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDN   77 (79)
T ss_pred             CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccC---eeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCC
Confidence            4889888999999999876669999999999999999999   9999999999999999998899999999999999999


Q ss_pred             CC
Q psy8639         383 LP  384 (570)
Q Consensus       383 ~P  384 (570)
                      +|
T Consensus        78 ~P   79 (79)
T smart00112       78 AP   79 (79)
T ss_pred             CC
Confidence            98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>smart00112 CA Cadherin repeats

Probab=99.46  E-value=5.5e-13  Score=105.72  Aligned_cols=73  Identities=44%  Similarity=0.608  Sum_probs=67.8

Q ss_pred             CCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCC-CCeeEEEEEEEEEecCCCCc
Q psy8639         458 FSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS-GDYDTTNVFITILDVNDNAP  530 (570)
Q Consensus       458 ~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~-~~~~~~~v~I~V~dvNd~~P  530 (570)
                      +.++.+.|+|..+.....|.|++.+|.|++.++||||....|.|.|+|+|.+. ++++.++|+|+|.|+|||+|
T Consensus         6 g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~P   79 (79)
T smart00112        6 GENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNAP   79 (79)
T ss_pred             CcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCCC
Confidence            67889999998876668999999999999999999999999999999999986 58899999999999999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.35  E-value=0.0016  Score=52.18  Aligned_cols=78  Identities=23%  Similarity=0.333  Sum_probs=43.4

Q ss_pred             cccccccccceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeEE
Q psy8639          53 RCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYK  132 (570)
Q Consensus        53 ~p~f~~~~~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~  132 (570)
                      +|-|....|.+.|+.+...|..++++.-.|-.   ....+.|..      + ...|.|. .+|.|++++++..... .-+
T Consensus         3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~---~~~~~~~~s------s-DpdF~V~-~DGsVy~~r~v~l~~~-~~~   70 (90)
T PF08758_consen    3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCT---GRRRVIFES------S-DPDFRVL-EDGSVYAKRPVQLSSE-QRS   70 (90)
T ss_dssp             --B--S-EEEE----SS-SS--EEE---B--S---S---EEEE----------SEEEEE-TTTEEEEES--S-SSS--EE
T ss_pred             cCCcccceEEEEcCchhhCCcEEEEEEeccCC---CCCceEEec------C-CCCEEEc-CCCeEEEeeeEecCCC-ceE
Confidence            57899999999999999999999999999874   356788876      2 3489999 6999999998876543 357


Q ss_pred             EEEEEEeCCC
Q psy8639         133 LEVRALDTST  142 (570)
Q Consensus       133 l~v~a~D~~g  142 (570)
                      |.|.|.|..+
T Consensus        71 F~V~a~D~~~   80 (90)
T PF08758_consen   71 FTVHAWDSQT   80 (90)
T ss_dssp             EEEEEEETTT
T ss_pred             EEEEEECCCC
Confidence            9999999765

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=97.24  E-value=0.004  Score=50.46  Aligned_cols=89  Identities=25%  Similarity=0.235  Sum_probs=62.5

Q ss_pred             EEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEc--------ccCCccCcceEEEEEEEEECCCCCCCCcee
Q psy8639         187 WNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLL--------QPLDYETLTSFILVVKVTDQAANISERLST  258 (570)
Q Consensus       187 ~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~--------~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~  258 (570)
                      ++|.++|+|.++  ...+++.......+.|.|++ .|.....        +.|...+.....|++.+.|+.         
T Consensus         2 G~Lt~sD~D~gd--~~~~s~~~~~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DGt---------   69 (99)
T TIGR01965         2 GQLTISDADAGQ--AHFIAQTDAAGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGT---------   69 (99)
T ss_pred             CceEEeCCCCCC--ceEEecccccCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCCC---------
Confidence            468899999765  46666654444467899987 6765543        234434445678888899852         


Q ss_pred             EEEEEEEEeeCCCCCCeeecCCCCeeEEEeccC
Q psy8639         259 SLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQT  291 (570)
Q Consensus       259 ~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~  291 (570)
                      +.+|.|+|...|| +|++...   ....+.|+.
T Consensus        70 t~~vtItI~GtND-apvi~~~---~~g~v~ED~   98 (99)
T TIGR01965        70 SQTVTITITGAND-AAVIGGA---DTGSVTEDS   98 (99)
T ss_pred             eEEEEEEEEccCC-CCEEecc---cceeEecCC
Confidence            6889999999999 8988765   356777754

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=96.93  E-value=0.017  Score=47.36  Aligned_cols=88  Identities=24%  Similarity=0.328  Sum_probs=61.7

Q ss_pred             ecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEeCCCCC
Q psy8639          65 IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSS  144 (570)
Q Consensus        65 v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D~~g~~  144 (570)
                      +.++...-..+..-...|+|    +..++|++....+...+.+...++.++.+.-. +... ....|.|+|+|+|..|  
T Consensus         9 a~~g~~f~~~i~~~tF~d~d----~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~~~-~~g~~~i~v~a~D~~g--   80 (97)
T smart00736        9 ATEGESFSYTIPSSTFTDAD----GDTLTYSATLSDGSALPSWLSFDSDTGTLSGT-PTNS-DVGSLSLKVTATDSSG--   80 (97)
T ss_pred             EeCCCeEEEEcChhceECCC----CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CCCC-CCcEEEEEEEEEECCC--
Confidence            34444333334334456776    46899999654443456799999988888774 3332 2467999999999755  


Q ss_pred             CCceeEEEEEEEEeeCCC
Q psy8639         145 NPQSSAVAIKIEIVDVND  162 (570)
Q Consensus       145 ~~~s~~~~v~I~V~dvNd  162 (570)
                        .++...++|.|.+.|+
T Consensus        81 --~~~~~~f~i~V~~~~~   96 (97)
T smart00736       81 --ASASDTFTITVVNTND   96 (97)
T ss_pred             --CEEEEEEEEEEeCCCC
Confidence              6788899999999887

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=96.61  E-value=0.025  Score=45.34  Aligned_cols=79  Identities=22%  Similarity=0.269  Sum_probs=43.6

Q ss_pred             CCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCCc
Q psy8639         382 SLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGY  461 (570)
Q Consensus       382 ~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (570)
                      ..|-|....|.+.|+.+...|..+++|.-.|...                                            ..
T Consensus         2 C~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~--------------------------------------------~~   37 (90)
T PF08758_consen    2 CRPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTG--------------------------------------------RR   37 (90)
T ss_dssp             ---B--S-EEEE----SS-SS--EEE---B--SS----------------------------------------------
T ss_pred             CcCCcccceEEEEcCchhhCCcEEEEEEeccCCC--------------------------------------------CC
Confidence            3588999999999999999999999999998865                                            34


Q ss_pred             eEEEEecCCCCCCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCC
Q psy8639         462 NLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS  510 (570)
Q Consensus       462 ~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~  510 (570)
                      .+.|..    .+..|+|.+ .|.|++.+++... .+...|.|.|.|..+
T Consensus        38 ~~~~~s----sDpdF~V~~-DGsVy~~r~v~l~-~~~~~F~V~a~D~~~   80 (90)
T PF08758_consen   38 RVIFES----SDPDFRVLE-DGSVYAKRPVQLS-SEQRSFTVHAWDSQT   80 (90)
T ss_dssp             -EEEE-------SEEEEET-TTEEEEES--S-S-SS-EEEEEEEEETTT
T ss_pred             ceEEec----CCCCEEEcC-CCeEEEeeeEecC-CCceEEEEEEECCCC
Confidence            677764    345999988 7999999988754 444689999999985

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=96.32  E-value=0.039  Score=44.82  Aligned_cols=89  Identities=24%  Similarity=0.309  Sum_probs=60.5

Q ss_pred             EEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEEC--------CcCCCCCCCeEEEEEEEEeCCCCCCCc
Q psy8639          76 GNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVA--------RQLDRETCPEYKLEVRALDTSTSSNPQ  147 (570)
Q Consensus        76 ~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~--------~~LD~E~~~~~~l~v~a~D~~g~~~~~  147 (570)
                      ++|.++|+|.+   ....+++...  ...-+.|.|++ +|.....        +.|..-+.-.-+|++++.|+       
T Consensus         2 G~Lt~sD~D~g---d~~~~s~~~~--~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DG-------   68 (99)
T TIGR01965         2 GQLTISDADAG---QAHFIAQTDA--AGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADG-------   68 (99)
T ss_pred             CceEEeCCCCC---CceEEecccc--cCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCC-------
Confidence            57899999954   6677777332  23467899985 7866432        23433344467788888883       


Q ss_pred             eeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCC
Q psy8639         148 SSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDT  180 (570)
Q Consensus       148 s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~  180 (570)
                       .+..|+|+|.-.|| +|+.... ....+.|+.
T Consensus        69 -tt~~vtItI~GtND-apvi~~~-~~g~v~ED~   98 (99)
T TIGR01965        69 -TSQTVTITITGAND-AAVIGGA-DTGSVTEDS   98 (99)
T ss_pred             -CeEEEEEEEEccCC-CCEEecc-cceeEecCC
Confidence             27889999999999 8876543 235676653

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=96.17  E-value=0.0042  Score=49.09  Aligned_cols=61  Identities=25%  Similarity=0.451  Sum_probs=36.8

Q ss_pred             eeecCCCCCCeEEEEEEEEcCCCCC-CCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCC
Q psy8639          63 NEIKEDVPIGFTVGNVVSTDSTGRA-GGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRET  127 (570)
Q Consensus        63 ~~v~E~~~~gt~v~~l~a~D~D~~~-~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~  127 (570)
                      .+|+|..+.|+.||.+. .|.-... .-..-.|.+.  .. ....+|.++..+|.|+++..+|||.
T Consensus         5 YsV~EE~~~Gt~IGnia-~dL~l~~~~l~~~~~ri~--s~-~~~~~~~v~~~tG~L~v~~rIDRE~   66 (84)
T PF08266_consen    5 YSVPEEMPPGTVIGNIA-KDLGLDPQSLSSRNFRIV--SE-GNSQYFRVNEKTGDLFVSERIDREE   66 (84)
T ss_dssp             EEEESS--TT-EEEECC-CCCT--HHHHCCTTBEEE---S-SSS-SEEE-TTTSEEEESS--SCCC
T ss_pred             EEeecCCCCCCEEEEhH-HhhCCCcccccccceEEe--ec-CCcceeEecCCceeEEeCCccCHHH
Confidence            47999999999999984 3432110 0012246662  22 4578999999999999999999998

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=96.10  E-value=0.091  Score=42.94  Aligned_cols=72  Identities=35%  Similarity=0.333  Sum_probs=53.9

Q ss_pred             EEecCCCCCCceEEEEEEecC--CCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEe
Q psy8639         190 TATDADDGSNGELRYGLVRQY--PEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVK  267 (570)
Q Consensus       190 ~a~D~D~g~~~~~~y~l~~~~--~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~  267 (570)
                      ...|.|   ...++|++....  +..+|..+++.++.+.-. +... ....|.|+|.|+|+.+     .+....++|.|.
T Consensus        23 tF~d~d---~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~~~-~~g~~~i~v~a~D~~g-----~~~~~~f~i~V~   92 (97)
T smart00736       23 TFTDAD---GDTLTYSATLSDGSALPSWLSFDSDTGTLSGT-PTNS-DVGSLSLKVTATDSSG-----ASASDTFTITVV   92 (97)
T ss_pred             ceECCC---CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CCCC-CCcEEEEEEEEEECCC-----CEEEEEEEEEEe
Confidence            346666   337888886532  335799999988887763 4333 3467999999999987     678889999999


Q ss_pred             eCCC
Q psy8639         268 DLND  271 (570)
Q Consensus       268 dvNd  271 (570)
                      +.|+
T Consensus        93 ~~~~   96 (97)
T smart00736       93 NTND   96 (97)
T ss_pred             CCCC
Confidence            9886

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=96.07  E-value=0.0058  Score=48.28  Aligned_cols=64  Identities=25%  Similarity=0.375  Sum_probs=38.3

Q ss_pred             eEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCCceEEEEecCC
Q psy8639         391 YHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAG  470 (570)
Q Consensus       391 ~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~  470 (570)
                      ...+|.|..++|+.|+.| |.|.-.                            ++            ..-....|.+.+.
T Consensus         3 i~YsV~EE~~~Gt~IGni-a~dL~l----------------------------~~------------~~l~~~~~ri~s~   41 (84)
T PF08266_consen    3 IRYSVPEEMPPGTVIGNI-AKDLGL----------------------------DP------------QSLSSRNFRIVSE   41 (84)
T ss_dssp             EEEEEESS--TT-EEEEC-CCCCT------------------------------H------------HHHCCTTBEEE-S
T ss_pred             eEEEeecCCCCCCEEEEh-HHhhCC----------------------------Cc------------ccccccceEEeec
Confidence            467899999999999987 444322                            00            0001224555555


Q ss_pred             CCCCcEEEeCCCcEEEEcccCCccc
Q psy8639         471 VADDMFKIDAETGVVTLARSLDRET  495 (570)
Q Consensus       471 ~~~~~F~Id~~tG~i~~~~~lD~E~  495 (570)
                      .....|.++..+|.|.++..+|||.
T Consensus        42 ~~~~~~~v~~~tG~L~v~~rIDRE~   66 (84)
T PF08266_consen   42 GNSQYFRVNEKTGDLFVSERIDREE   66 (84)
T ss_dssp             SSS-SEEE-TTTSEEEESS--SCCC
T ss_pred             CCcceeEecCCceeEEeCCccCHHH
Confidence            5678999999999999999999996

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)

Probab=95.81  E-value=1.3  Score=39.65  Aligned_cols=32  Identities=31%  Similarity=0.480  Sum_probs=26.7

Q ss_pred             cccceEEEEEEEEeCCCCCeeEEEEEEEEEecC
Q psy8639         494 ETVDQYNLVVHVTDSKSGDYDTTNVFITILDVN  526 (570)
Q Consensus       494 E~~~~~~l~V~atD~~~~~~~~~~v~I~V~dvN  526 (570)
                      |....|+|+|.|+|.. |...++++.+...+.|
T Consensus       120 e~~~~YtLtV~a~D~a-GN~~~~si~F~y~P~~  151 (158)
T PF13750_consen  120 EADDSYTLTVSATDKA-GNQSTKSISFSYMPPN  151 (158)
T ss_pred             CCCCeEEEEEEEEecC-CCEEEEEEEEEEeCCe
Confidence            6788999999999998 5788888888876543

>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)

Probab=95.46  E-value=1.2  Score=39.99  Aligned_cols=129  Identities=19%  Similarity=0.199  Sum_probs=70.1

Q ss_pred             CCCeEEEEE-EEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCC-CCeEEEEeEEecCCCCCCceEEE
Q psy8639         127 TCPEYKLEV-RALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTL-VGSTIWNFTATDADDGSNGELRY  204 (570)
Q Consensus       127 ~~~~~~l~v-~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~-~gt~v~~v~a~D~D~g~~~~~~y  204 (570)
                      ....|.+++ +|.|..|    ...+..+..++. ++..+|.+.- .....+..+.. .+..-..+.++|...+. .--..
T Consensus        13 ~dG~Y~l~~~~a~D~ag----N~~~~~~~~~~~-iD~T~Ptisi-~~~~~~~~g~~v~~~~~i~i~~tD~~~~~-~i~sv   85 (158)
T PF13750_consen   13 PDGSYTLTVVTATDAAG----NTSTSTVSETFT-IDNTPPTISI-SDGASVANGSTVYGLVNISINVTDNSDDS-KITSV   85 (158)
T ss_pred             CCccEEEEEEEEEecCC----CEEEEEEeeEEE-EcCCCCEEEE-ecCCccCCCccccceeeeEEEEEeCCCCc-eEEEE
Confidence            356899999 8999776    344444443333 2445776533 11112222222 12333567777765433 34455


Q ss_pred             EEEecCCCCCcEEE--eCC-CcEEEEc--cc-CCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         205 GLVRQYPEGNHFSV--DHL-TGTLTLL--QP-LDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       205 ~l~~~~~~~~~F~I--d~~-~G~i~~~--~~-lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      +|..+. ......+  ... .|...+.  +. -..|....|+|+|.|+|..|     ...+..+.+...+
T Consensus        86 ~l~Gg~-~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aG-----N~~~~si~F~y~P  149 (158)
T PF13750_consen   86 SLTGGP-ASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAG-----NQSTKSISFSYMP  149 (158)
T ss_pred             EEECCc-ccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEEecCC-----CEEEEEEEEEEeC
Confidence            665442 2233222  221 2333332  11 12366789999999999998     6777777776654

>TIGR00845 caca sodium/calcium exchanger 1

Probab=92.20  E-value=21  Score=40.99  Aligned_cols=49  Identities=16%  Similarity=0.139  Sum_probs=33.3

Q ss_pred             CCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCCCCCeEEEEEEEeCCC
Q psy8639         270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNE  322 (570)
Q Consensus       270 Nd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~  322 (570)
                      ||..+.+....  ....|.|++  |+.-.++.-...|.+....+.|+..++..
T Consensus       396 dd~~s~i~Fe~--~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA  444 (928)
T TIGR00845       396 NDPVSKIFFEP--GHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTA  444 (928)
T ss_pred             cCCcceEEecC--CeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCcc
Confidence            44455555554  578899987  67666676665566556778898887754

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family

>TIGR00864 PCC polycystin cation channel protein

Probab=92.10  E-value=46  Score=42.86  Aligned_cols=32  Identities=9%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             CccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeC
Q psy8639         232 DYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDL  269 (570)
Q Consensus       232 D~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dv  269 (570)
                      -|.....|++++.|++..+      +...++.|.|.+.
T Consensus      1563 TY~spGtYtVtLTvtN~~G------s~~~T~~i~V~~~ 1594 (2740)
T TIGR00864      1563 TFRSVGTFNIIVTAENDVG------AAQASIFLFVLQE 1594 (2740)
T ss_pred             eecCCceEEEEEEEecCCC------ccceeEEEEEeec
Confidence            3566789999999999886      3455666666654

Note: this model has been restricted to the amino half because for technical reasons.

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=87.22  E-value=3.1  Score=29.05  Aligned_cols=36  Identities=19%  Similarity=0.327  Sum_probs=28.0

Q ss_pred             CCCcEEEeCCCcEEEEcccCCcc-ccceEEEEEEEEeCC
Q psy8639         472 ADDMFKIDAETGVVTLARSLDRE-TVDQYNLVVHVTDSK  509 (570)
Q Consensus       472 ~~~~F~Id~~tG~i~~~~~lD~E-~~~~~~l~V~atD~~  509 (570)
                      ...+++||+.+|.|+-.-.  .. ....|.|+|+|+|+.
T Consensus        12 LP~gLs~d~~tG~isGtp~--~~~~~G~y~~~vtatd~~   48 (49)
T PF05345_consen   12 LPSGLSLDPSTGTISGTPT--SSVQPGTYTFTVTATDGS   48 (49)
T ss_pred             CCCcEEEeCCCCEEEeecC--CCccccEEEEEEEEEcCC
Confidence            4578999999999976532  22 347999999999986

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=86.99  E-value=3.7  Score=28.68  Aligned_cols=47  Identities=26%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             EEEEecCCCCCCCceEEECcccEEEECCcCCCC-CCCeEEEEEEEEeCCC
Q psy8639          94 YSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRE-TCPEYKLEVRALDTST  142 (570)
Q Consensus        94 ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E-~~~~~~l~v~a~D~~g  142 (570)
                      |++........+....+|+.+|.|.-...  .+ +...|.|.|+|+|..|
T Consensus         2 ys~~~~~~~~LP~gLs~d~~tG~isGtp~--~~~~~G~y~~~vtatd~~G   49 (49)
T PF05345_consen    2 YSLTTPTGGGLPSGLSLDPSTGTISGTPT--SSVQPGTYTFTVTATDGSG   49 (49)
T ss_pred             EEEEcCCCCCCCCcEEEeCCCCEEEeecC--CCccccEEEEEEEEEcCCC
Confidence            55422233456778899999999987643  22 2359999999999643

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain

Probab=85.62  E-value=13  Score=32.31  Aligned_cols=57  Identities=23%  Similarity=0.390  Sum_probs=38.0

Q ss_pred             EEEECCcCCCCC---CCeEEEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCC
Q psy8639         116 SLVVARQLDRET---CPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDT  180 (570)
Q Consensus       116 ~l~~~~~LD~E~---~~~~~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~  180 (570)
                      .+.+.++||+..   .-...|.|.|+|..|    ...+..+.|+|.|  | .|+..... .+.|.|+.
T Consensus        69 tftL~~~lDH~~g~d~l~l~~~v~a~D~DG----D~s~~~l~VtI~D--D-~P~~~~~~-~~~V~E~~  128 (137)
T TIGR03660        69 EFTLEGPLDHAAGSDELTLNFPIIATDFDG----DTSSITLPVTIVD--D-VPTITDVD-ALTVDEDD  128 (137)
T ss_pred             EEEEcccccCCCCCceEEEeeeEEEEeCCC----CccccEEEEEEEC--C-CCeecccc-ceEEeccc
Confidence            334556776633   446788999999877    3334578888887  6 57765543 36888864

This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.

>KOG3597|consensus

Probab=84.72  E-value=56  Score=34.39  Aligned_cols=159  Identities=18%  Similarity=0.167  Sum_probs=90.7

Q ss_pred             EEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCCC---CcEEEeCC-----
Q psy8639         150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEG---NHFSVDHL-----  221 (570)
Q Consensus       150 ~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~---~~F~Id~~-----  221 (570)
                      +....|.|..+||.+..+...-+.+.+.|+...-.....+.+.|+|.+. ..+.|++.......   ..|.....     
T Consensus        25 ~~~~~i~v~pvndpp~~~~~~~~~l~~~~~~~k~l~~~~l~~~d~d~~~-~~l~f~v~~t~~~~~~~~~~~~~g~~~~~F  103 (442)
T KOG3597|consen   25 TDVLRIHVNPVNDPPSLIFPSGSLLVILEGGQKVLDPELLTAADPDSAP-LPLEFQVLGTSSVPLPVLKFDVPGAPATEF  103 (442)
T ss_pred             EeeecccccccCCCcceeecccceEEeecCCceeccceEeeccCCCCCc-cceEEEEccCCCCCCccceeeccCCcccce
Confidence            3457799999999666555544458899988766667789999998654 46888887743211   11333221     


Q ss_pred             ------CcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCe
Q psy8639         222 ------TGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS  295 (570)
Q Consensus       222 ------~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~  295 (570)
                            .|.+.+...-  .+.....++..++|+-.      .+. .+.......-. .|.+...   ....|.-.+..-.
T Consensus       104 s~~~v~~g~~~yvh~g--~el~~~~~~~~~SDg~~------~S~-~~i~~~~~~~~-~~~~~~~---~gL~v~~gS~~~I  170 (442)
T KOG3597|consen  104 SYEEVEDGSLSYVHSG--TELRESELQLRVSDGLL------VSE-RAILKVEATGP-APHLARN---TGLKVLQGSTAPI  170 (442)
T ss_pred             EehHhhcCceeEEecC--cccccceEEEEeecceE------eee-eEEecccCCCc-ceeeecc---cceEEccCccccc
Confidence                  1223222110  12456788888888752      222 22222222211 3333332   2344444443222


Q ss_pred             EEEEEEEEeCCCCCCeEEEEEEEeCCC
Q psy8639         296 HVTKMTAVDQDSGDNGRVTYVISGGNE  322 (570)
Q Consensus       296 ~v~~v~a~D~D~~~~~~i~ysi~~~~~  322 (570)
                      .-..+++.|.|.+....+.|.|.....
T Consensus       171 T~~~L~ved~d~~~d~~v~~~i~~~P~  197 (442)
T KOG3597|consen  171 TPSNLSVEDNDSSPDDEVRYDITPPPQ  197 (442)
T ss_pred             cHhHceeecCCCCCCcEEEEEecCCCC
Confidence            223589999998777889999987644

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=82.22  E-value=16  Score=26.86  Aligned_cols=61  Identities=20%  Similarity=0.166  Sum_probs=36.5

Q ss_pred             CCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEECCcCCceeEEEEEEEEe
Q psy8639         309 DNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSE  377 (570)
Q Consensus       309 ~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~  377 (570)
                      .+-...|.|.+. ...|..+...+-.+...       ....+.|+|.|.|.|..........++.|.|+
T Consensus         6 ~~~~Y~Y~l~g~-d~~W~~~~~~~~~~~~~-------~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I~   66 (66)
T PF07495_consen    6 ENIRYRYRLEGF-DDEWITLGSYSNSISYT-------NLPPGKYTLEVRAKDNNGKWSSDEKSLTITIL   66 (66)
T ss_dssp             TTEEEEEEEETT-ESSEEEESSTS-EEEEE-------S--SEEEEEEEEEEETTS-B-SS-EEEEEEEE
T ss_pred             CceEEEEEEECC-CCeEEECCCCcEEEEEE-------eCCCEEEEEEEEEECCCCCcCcccEEEEEEEC
Confidence            455677777765 57777776543244443       33478999999999965543333366666663

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF13753 SWM_repeat: Putative flagellar system-associated repeat

Probab=81.93  E-value=60  Score=32.67  Aligned_cols=109  Identities=17%  Similarity=0.230  Sum_probs=53.9

Q ss_pred             CCCeEEEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCC------CCCeEEEEeEEecCCCCCCc
Q psy8639         127 TCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDT------LVGSTIWNFTATDADDGSNG  200 (570)
Q Consensus       127 ~~~~~~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~------~~gt~v~~v~a~D~D~g~~~  200 (570)
                      ....|.+.++++|..|.    .......+.|--   .+|...-.    .+.++.      ..........+++.+.  +.
T Consensus        10 ~d~~~~v~vt~tD~aGN----~~~~t~~~~vDt---~~P~v~i~----~~~~~~~~~~~~~~~~~t~s~tvs~~~~--g~   76 (317)
T PF13753_consen   10 ADGTYTVSVTVTDAAGN----TSTATQSITVDT---TAPTVTIT----SIADDDIINGDEATNTVTFSGTVSGAEP--GS   76 (317)
T ss_pred             CCCcEEEEEEEEeCCCC----eeeeeEEEEEec---CCCceeee----cccCCCccccceeeeeeEEEEEecCCCC--CC
Confidence            35689999999998773    333444444332   26643221    111111      1122334445444443  33


Q ss_pred             eEEEEEEecCCCCCcEEEeCCCcEEEEcccC-CccCcceEEEEEE-EEECCCCC
Q psy8639         201 ELRYGLVRQYPEGNHFSVDHLTGTLTLLQPL-DYETLTSFILVVK-VTDQAANI  252 (570)
Q Consensus       201 ~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~l-D~e~~~~~~l~v~-a~D~~~~~  252 (570)
                      .+.+.+. +.  ...+..+ ..|.+...-+. +.-....|.+.+. ++|..|..
T Consensus        77 ~v~v~~~-g~--~~t~~~~-~~G~ws~t~~~~~~l~~g~~ti~v~~~tD~aGN~  126 (317)
T PF13753_consen   77 TVTVTIN-GT--TGTLTAD-ADGNWSVTVTPSDDLPDGDYTITVTTVTDAAGNT  126 (317)
T ss_pred             EEEEEEC-CE--EEEEEEe-cCCcEEEeeccccccccCcceeEEEEEEccCCcc
Confidence            5666552 11  1233333 34543332221 1123347889998 99999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	570
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		2e-25
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		3e-12
1l3w_A	546	C-Cadherin Ectodomain Length = 546		1e-24
1l3w_A	546	C-Cadherin Ectodomain Length = 546		8e-08
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		2e-24
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		8e-08
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		2e-22
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		7e-09
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		4e-05
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		5e-21
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		4e-10
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		3e-18
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		2e-07
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		2e-17
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		5e-12
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		3e-08
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		8e-17
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		5e-12
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		3e-08
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		1e-16
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		4e-12
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		2e-09
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		3e-16
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		3e-06
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		5e-16
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		3e-11
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		2e-07
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		1e-15
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		8e-10
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		6e-05
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		2e-15
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		1e-06
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		8e-04
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		4e-15
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		3e-06
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		7e-04
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		4e-15
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		2e-08
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		6e-05
3lni_A	213	Crystal Structure Of E-Cadherin Ec12 E89a Length =		8e-14
3lni_A	213	Crystal Structure Of E-Cadherin Ec12 E89a Length =		2e-04
3lnh_A	213	Crystal Structure Of E-Cadherin Ec12 W2a Length = 2		1e-13
3lnh_A	213	Crystal Structure Of E-Cadherin Ec12 W2a Length = 2		3e-04
3lnf_A	213	Crystal Structure Of E-Cadherin Ec12 K14ew2a Length		1e-13
3lnf_A	213	Crystal Structure Of E-Cadherin Ec12 K14ew2a Length		3e-04
2qvf_B	213	Mouse E-cadherin Domains 1,2 Length = 213		2e-13
2qvf_B	213	Mouse E-cadherin Domains 1,2 Length = 213		2e-04
3qrb_A	213	Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt		2e-13
3qrb_A	213	Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt		3e-04
1q1p_A	212	E-Cadherin Activation Length = 212		2e-13
1q1p_A	212	E-Cadherin Activation Length = 212		2e-04
3lne_A	213	Crystal Structure Of E-Cadherin Ec12 K14e Length =		2e-13
3lne_A	213	Crystal Structure Of E-Cadherin Ec12 K14e Length =		3e-04
3lng_A	215	Crystal Structure Of E-Cadherin Ec12 Aa Extension L		2e-13
3lng_A	215	Crystal Structure Of E-Cadherin Ec12 Aa Extension L		3e-04
3q2l_A	213	Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213		4e-13
3q2l_A	213	Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213		7e-05
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		7e-13
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		2e-04
3q2n_A	213	Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213		9e-13
3q2n_A	213	Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213		3e-04
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		5e-12
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		3e-09
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		1e-11
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		3e-05
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		4e-11
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		1e-05
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		2e-04
4apx_B	242	Crystal Structure Of Mouse Cadherin-23 Ec1-2 And Pr		7e-09
3ppe_A	203	Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng		2e-08
3ppe_A	203	Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng		5e-08
3ppe_A	203	Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng		5e-04
3ubf_A	316	Crystal Structure Of Drosophila N-Cadherin Ec1-3, I		2e-07
2yst_A	119	Solution Structure Of The Third Cadherin Domain Fro		4e-06
2ee0_A	114	Solution Structures Of The Ca Domain Of Human Proto		4e-06
1suh_A	146	Amino-Terminal Domain Of Epithelial Cadherin In The		1e-05
1suh_A	146	Amino-Terminal Domain Of Epithelial Cadherin In The		2e-04

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 195/463 (42%), Gaps = 75/463 (16%)
Query: 105 SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNA 164
           +G F I+  SG L V + LDRE    + L   A+D +   N   + + I I ++D+NDN 
Sbjct: 48  TGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNR 105
Query: 165 PRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS--NGELRYGLVRQYPE---GNHFSVD 219
           P +        V E +  G+ +   TA DADD +  NG LRY ++ Q P     N F+++
Sbjct: 106 PEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTIN 165
Query: 220 HLTG-TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVS 278
           + TG  +T+   LD E +  + L+++ TD   N +  LS + TA + V D+NDN P F  
Sbjct: 166 NETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFT- 224
Query: 279 PTRGSLIYVSE--QTRVGSHVTKMTAVDQDSGDN--GRVTYVISGGNEDARFHLDHDKGI 334
               ++ +  E  + RV   V  +T  D+D          Y ISGG+   RF +  D   
Sbjct: 225 ----AMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNS 280
Query: 335 L-SLARVISEYDHQSKFRAVLNITASDH-----GI--PPKSSSLVINILSETVSTSLPTF 386
              L  V+   D ++    VL + A +      GI  PP+S++        TVS ++   
Sbjct: 281 NDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTA--------TVSVTVIDV 332
Query: 387 LSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPS 446
               Y A       P   II+                     E    GT +  + A+ P 
Sbjct: 333 NENPYFA-------PNPKIIR-------------------QEEGLHAGTMLTTLTAQDPD 366
Query: 447 TYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVT 506
            Y+      +  S        PA    +  KID   G +T    LDRE+ +  N + + T
Sbjct: 367 RYMQQNIRYTKLSD-------PA----NWLKIDPVNGQITTIAVLDRESPNVKNNIYNAT 415
Query: 507 DSKSGD-----YDTTNVFITILDVNDNAPEFKSGSCYPITIPE 544
              S +       T  + I +LD+NDNAP+           PE
Sbjct: 416 FLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPE 458

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 54/290 (18%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHDKGILSLARV 340
           I + E +R G    ++  +  D   N  + Y ++G   D      F ++   G LS+ + 
Sbjct: 7   INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 341 IS-EYDHQSKFRA-VLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSED 398
           +  E   +   RA  ++I  +    P     +VIN++   ++ + P FL   ++ +V E 
Sbjct: 66  LDRELIARFHLRAHAVDINGNQVENP---IDIVINVID--MNDNRPEFLHQVWNGSVPEG 120
Query: 399 AIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDF 458
           + PGTY++ V A             +     +A+ G    ++++++PST           
Sbjct: 121 SKPGTYVMTVTA-------------IDADDPNALNGMLRYRILSQAPST----------- 156
Query: 459 SGYNLTYMIPAGVADDMFKIDAETG-VVTLARSLDRETVDQYNLVVHVTDSKS----GDY 513
                        + +MF I+ ETG ++T+A  LDRE V QY L++  TD +     G  
Sbjct: 157 ------------PSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLS 204
Query: 514 DTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFH 563
           +T    IT+ DVNDN PEF + + Y   +PEN     V     TD    H
Sbjct: 205 NTATAVITVTDVNDNPPEFTAMTFY-GEVPENRVDVIVANLTVTDKDQPH 253

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 204/459 (44%), Gaps = 72/459 (15%)
Query: 91  HVMYSLTSLSPTDH-SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T     +   G F I+  +G ++V R LDRE   +Y L   A+  S + +P   
Sbjct: 39  KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV--SENGSPVEE 96
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG---SNGELRYGL 206
            + I I ++D NDN P++ ++     V E    G+ +   +ATD DD     NG L Y +
Sbjct: 97  PMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSI 156
Query: 207 VRQYPE---GNHFSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTA 262
           ++Q PE    N F+++  TG ++L+   LD E    + L V+ TD        LS    A
Sbjct: 157 LKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEG---AGLSVEGKA 213
Query: 263 RVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDN--GRVTYVISGG 320
            + + D NDNAP+F   T  +L+  +E   +G  V +++  D D       +  Y I   
Sbjct: 214 IIQITDANDNAPIFDPKTYTALVPENE---IGFEVQRLSVTDLDMPGTPAWQAVYKIRV- 269
Query: 321 NEDARFHLDHD----KGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILS 376
           NE   F++  D    +GIL+ A+ +   D + + + VL IT  +               +
Sbjct: 270 NEGGFFNITTDPESNQGILTTAKGL---DFELRKQYVLQITVEN---------------A 311
Query: 377 ETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTY 436
           E  S  LPT  +        ED     + +  V+R               VSED   G  
Sbjct: 312 EPFSVPLPTSTA--TVTVTVEDVNEAPFFVPAVSR-------------VDVSEDLSRGEK 356
Query: 437 IIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETV 496
           II +VA+ P      +  +S F G +     PA        ++ + G+VT   +LDRE+ 
Sbjct: 357 IISLVAQDPDKQ--QIQKLSYFIGND-----PA----RWLTVNKDNGIVTGNGNLDRESE 405
Query: 497 ----DQYNLVVHVTDSK-SGDYDTTNVFITILDVNDNAP 530
               + Y +++ VTD   S    T  + + +LDVNDN P
Sbjct: 406 YVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP 444

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 111/285 (38%), Gaps = 54/285 (18%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNED----ARFHLDHDKGILSLARV 340
           I VSE  R G    ++  +  +     +V Y I+G   D      F ++ + G + + R 
Sbjct: 13  IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 71
Query: 341 I--SEYDHQSKFRAVLNITA-SDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVS 396
           +   EYD     + VL+  A S++G P  +   + IN++ +  + + P F    +  +V 
Sbjct: 72  LDREEYD-----KYVLSSHAVSENGSPVEEPMEITINVIDQ--NDNRPKFTQDVFRGSVR 124
Query: 397 EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLIS 456
           E   PGT ++ V A                 + D++ G     ++ + P   + ++    
Sbjct: 125 EGVQPGTQVMAVSATDEDD------------NIDSLNGVLSYSILKQDPEEPIPNL---- 168
Query: 457 DFSGYNLTYMIPAGVADDMFKIDAETGVVTL-ARSLDRETVDQYNLVVHVTDSKSGDYDT 515
                              F I+ ETGV++L    LDRE   +Y L V  TD +      
Sbjct: 169 -------------------FTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSV 209
Query: 516 T-NVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDF 559
                I I D NDNAP F     Y   +PEN     V     TD 
Sbjct: 210 EGKAIIQITDANDNAPIFDP-KTYTALVPENEIGFEVQRLSVTDL 253

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 201/458 (43%), Gaps = 72/458 (15%)
Query: 92  VMYSLTSLSPTDH-SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSA 150
           V YS+T     +   G F I+  +G ++V R LDRE   +Y L   A+  S + +P    
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV--SENGSPVEEP 246
Query: 151 VAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG---SNGELRYGLV 207
           + I I ++D NDN P++ ++     V E    G+ +   +ATD DD     NG L Y ++
Sbjct: 247 MEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSIL 306
Query: 208 RQYPEG---NHFSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTAR 263
           +Q PE    N F+++  TG ++L+   LD E    + L V+ TD        LS    A 
Sbjct: 307 KQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEG---AGLSVEGKAI 363
Query: 264 VVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDN--GRVTYVISGGN 321
           + + D NDNAP+F   T  +L+  +E   +G  V +++  D D       +  Y I   N
Sbjct: 364 IQITDANDNAPIFDPKTYTALVPENE---IGFEVQRLSVTDLDMPGTPAWQAVYKIRV-N 419
Query: 322 EDARFHLDHD----KGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSE 377
           E   F++  D    +GIL+ A+ +   D + + + VL IT  +               +E
Sbjct: 420 EGGFFNITTDPESNQGILTTAKGL---DFELRKQYVLQITVEN---------------AE 461
Query: 378 TVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYI 437
             S  LPT  +        ED     + +  V+R               VSED   G  I
Sbjct: 462 PFSVPLPTSTA--TVTVTVEDVNEAPFFVPAVSR-------------VDVSEDLSRGEKI 506
Query: 438 IKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETV- 496
           I +VA+ P                 L+Y I    A     ++ + G+VT   +LDRE+  
Sbjct: 507 ISLVAQDPDKQQIQ----------KLSYFIGNDPAR-WLTVNKDNGIVTGNGNLDRESEY 555
Query: 497 ---DQYNLVVHVTDSK-SGDYDTTNVFITILDVNDNAP 530
              + Y +++ VTD   S    T  + + +LDVNDN P
Sbjct: 556 VKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP 593

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 112/285 (39%), Gaps = 54/285 (18%)
Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNED----ARFHLDHDKGILSLARV 340
           I VSE  R G    ++  +  +     +V Y I+G   D      F ++ + G + + R 
Sbjct: 162 IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 220
Query: 341 I--SEYDHQSKFRAVLNITA-SDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVS 396
           +   EYD     + VL+  A S++G P  +   + IN++ +  + + P F    +  +V 
Sbjct: 221 LDREEYD-----KYVLSSHAVSENGSPVEEPMEITINVIDQ--NDNRPKFTQDVFRGSVR 273
Query: 397 EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLIS 456
           E   PGT ++ V A                 + D++ G     ++ + P           
Sbjct: 274 EGVQPGTQVMAVSATDEDD------------NIDSLNGVLSYSILKQDPEE--------- 312
Query: 457 DFSGYNLTYMIPAGVADDMFKIDAETGVVTL-ARSLDRETVDQYNLVVHVTDSKSGDYDT 515
                     IP     ++F I+ ETGV++L    LDRE   +Y L V  TD +      
Sbjct: 313 ---------PIP-----NLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSV 358
Query: 516 T-NVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDF 559
                I I D NDNAP F     Y   +PEN     V     TD 
Sbjct: 359 EGKAIIQITDANDNAPIFDP-KTYTALVPENEIGFEVQRLSVTDL 402

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 142/272 (52%), Gaps = 22/272 (8%)
Query: 108 FDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRW 167
           F I+  +G +   ++LDRE   EY L  +A+D  T+  P        I++ D+NDNAP +
Sbjct: 48  FQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETN-KPLEPPSEFIIKVQDINDNAPEF 106
Query: 168 GENPLTIPVNEDTLVGSTIWNFTATDADD---GSNGELRYGLVRQYPEGNHFSVDHLTGT 224
              P    V E +++G+++ N TATDADD   G++ +L Y ++   P   +FS++  T  
Sbjct: 107 LNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP---YFSIEPETAI 163
Query: 225 L-TLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGS 283
           + T L  +D E    +++V++  D   + S  LS + T  V + D+NDN P F      S
Sbjct: 164 IKTALPNMDREAKEEYLVVIQAKDMGGH-SGGLSGTTTLTVTLTDVNDNPPKFAQ----S 218
Query: 284 LIY--VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDK----GILSL 337
           L +  V E   +G+ + ++ A DQD G+N + +Y I  G+  A F +  D     G++ L
Sbjct: 219 LYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRL 278
Query: 338 ARVISEYDHQSKFRAVLNITASDHGIPPKSSS 369
            + +   D ++K    L + A++  I P+ SS
Sbjct: 279 RKPL---DFETKKSYTLKVEAANIHIDPRFSS 307

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 17/225 (7%)
Query: 192 TDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAAN 251
           TD D GS  +++Y ++     G  F ++ +TG +  ++ LD E    + L  +  D   N
Sbjct: 26  TDLDPGSK-KIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETN 83
Query: 252 ISERLSTSLTARVVVKDLNDNAPVFVS-PTRGSLIYVSEQTRVGSHVTKMTAVDQDS--- 307
             + L       + V+D+NDNAP F++ P   +   V E + +G+ VT +TA D D    
Sbjct: 84  --KPLEPPSEFIIKVQDINDNAPEFLNGPYHAT---VPEMSILGTSVTNVTATDADDPVY 138
Query: 308 GDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPK- 366
           G++ ++ Y I  G     F ++ +  I+  A  +   D ++K   ++ I A D G     
Sbjct: 139 GNSAKLVYSILEGQ--PYFSIEPETAIIKTA--LPNMDREAKEEYLVVIQAKDMGGHSGG 194
Query: 367 -SSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVA 410
            S +  + +    V+ + P F    YH +V ED + GT I +V A
Sbjct: 195 LSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKA 239

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 21/120 (17%)
Query: 447 TYVY-HMYLISDFSG-----------------YNLTYMIPAGVADDMFKIDAETGVVTLA 488
           ++V+  M+++ +FSG                   + Y++    A  +F+I+  TG +   
Sbjct: 1   SWVWNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAI 60
Query: 489 RSLDRETVDQYNLVVHVTDSKSGD--YDTTNVFITILDVNDNAPEFKSGSCYPITIPENS 546
           + LDRE   +Y L     D ++       +   I + D+NDNAPEF +G  Y  T+PE S
Sbjct: 61  KRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGP-YHATVPEMS 119

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 160/351 (45%), Gaps = 32/351 (9%)
Query: 84  TGRAGGGHVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTST 142
           + R     V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S+
Sbjct: 26  SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SS 83
Query: 143 SSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---N 199
           +       + I I + D NDN P + +      V E  + G+++   +ATDADD     N
Sbjct: 84  NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 143
Query: 200 GELRYGLVRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-E 254
             + Y +V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E
Sbjct: 144 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGE 199
Query: 255 RLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVT 314
            LST+  A + VKD+NDNAPVF   T    +  +E   V + +  +   D D+ +     
Sbjct: 200 GLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE---VNARIATLKVTDDDAPNTPAWK 256
Query: 315 YVISGGNE-DARFHLDHDK----GILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSS 369
            V +  N+ D +F +  D     GIL  A+ +   D ++K + +L++   +    P   S
Sbjct: 257 AVYTVVNDPDQQFVVVTDPTTNDGILKTAKGL---DFEAKQQYILHVRVENEE--PFEGS 311
Query: 370 LV----INILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTY 416
           LV       +        P F+       V ED   G  I    AR P T+
Sbjct: 312 LVPSTATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTF 362

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
           EVF   V+E A+PGT ++KV A      V  Y+  +      Y +    P     +MF +
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 165
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILDVNDNAPEFKSGS 536
           + +TGV++ L   LDRE+   Y LVV   D +     TT    IT+ D+NDNAP F   S
Sbjct: 166 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNP-S 224
Query: 537 CYPITIPENSEAANVHTFIATD 558
            Y   +PEN   A + T   TD
Sbjct: 225 TYQGQVPENEVNARIATLKVTD 246

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 103/195 (52%), Gaps = 15/195 (7%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 35  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 92
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 93  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 152
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 153 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 208
Query: 262 ARVVVKDLNDNAPVF 276
           A + VKD+NDNAPVF
Sbjct: 209 AVITVKDINDNAPVF 223

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
           EVF   V+E A+PGT ++KV A      V  Y+  +      Y +    P     +MF +
Sbjct: 113 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 167
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILDVNDNAPEF 532
           + +TGV++ L   LDRE+   Y LVV   D +     TT    IT+ D+NDNAP F
Sbjct: 168 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVF 223

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 20/216 (9%)
Query: 56  FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
           F  YL    I ED P+G +V  +++ D             +  +S  + S  F ++  +G
Sbjct: 13  FDTYLL---ISEDTPVGSSVTQLLARDMDNDP-------LVFGVSGEEASRFFAVEPDTG 62
Query: 116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
            + + + LDRET  E+ +E      S S +       + I++ DVNDNAP +   P ++ 
Sbjct: 63  VVWLRQPLDRETKSEFTVEF-----SVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVR 117
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
           + E+T VG+ I+   ATD D G+ G + Y      P    F++D   G +T++Q LDYE 
Sbjct: 118 IPENTPVGTPIFIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEV 174
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLND 271
             ++ L V  TDQ  + +  LST     +++ D+ D
Sbjct: 175 TQAYQLTVNATDQ--DKTRPLSTLANLAIIITDMQD 208

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
           ++EDT VGS++    A D D   N  L +G V        F+V+  TG + L QPLD ET
Sbjct: 19  ISEDTPVGSSVTQLLARDMD---NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPLDRET 74
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
            + F +   V+D    I+ +++      + V D+NDNAP F +  +   + + E T VG+
Sbjct: 75  KSEFTVEFSVSDHQGVITRKVN------IQVGDVNDNAPTFHN--QPYSVRIPENTPVGT 126
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLN 355
            +  + A D D G  G V Y  S       F +D  +GI++   VI E D++      L 
Sbjct: 127 PIFIVNATDPDLGAGGSVLY--SFQPPSPFFAIDSARGIVT---VIQELDYEVTQAYQLT 181
Query: 356 ITASDH 361
           + A+D 
Sbjct: 182 VNATDQ 187

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Query: 416 YGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM 475
           + N+ +    L+SED   G+ + +++AR             D     L + +    A   
Sbjct: 8   FTNHFFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVSGEEASRF 54
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSG 535
           F ++ +TGVV L + LDRET  ++ +   V+D +     T  V I + DVNDNAP F + 
Sbjct: 55  FAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG--VITRKVNIQVGDVNDNAPTFHN- 111
Query: 536 SCYPITIPENS 546
             Y + IPEN+
Sbjct: 112 QPYSVRIPENT 122

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 20/214 (9%)
Query: 56  FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
           F  YL    I ED P+G +V  +++ D             +  +S  + S  F ++  +G
Sbjct: 14  FDTYLL---ISEDTPVGSSVTQLLARDMDNDP-------LVFGVSGEEASRFFAVEPDTG 63
Query: 116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
            + + + LDRET  E+ +E      S S +       + I++ DVNDNAP +   P ++ 
Sbjct: 64  VVWLRQPLDRETKSEFTVEF-----SVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVR 118
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
           + E+T VG+ I+   ATD D G+ G + Y      P    F++D   G +T++Q LDYE 
Sbjct: 119 IPENTPVGTPIFIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEV 175
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDL 269
             ++ L V  TDQ  + +  LST     +++ DL
Sbjct: 176 TQAYQLTVNATDQ--DKTRPLSTLANLAIIITDL 207

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
           ++EDT VGS++    A D D   N  L +G V        F+V+  TG + L QPLD ET
Sbjct: 20  ISEDTPVGSSVTQLLARDMD---NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPLDRET 75
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
            + F +   V+D    I+ +++      + V D+NDNAP F +  +   + + E T VG+
Sbjct: 76  KSEFTVEFSVSDHQGVITRKVN------IQVGDVNDNAPTFHN--QPYSVRIPENTPVGT 127
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLN 355
            +  + A D D G  G V Y  S       F +D  +GI++   VI E D++      L 
Sbjct: 128 PIFIVNATDPDLGAGGSVLY--SFQPPSPFFAIDSARGIVT---VIQELDYEVTQAYQLT 182
Query: 356 ITASDH 361
           + A+D 
Sbjct: 183 VNATDQ 188

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Query: 416 YGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM 475
           + N+ +    L+SED   G+ + +++AR             D     L + +    A   
Sbjct: 9   FTNHFFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVSGEEASRF 55
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSG 535
           F ++ +TGVV L + LDRET  ++ +   V+D +     T  V I + DVNDNAP F + 
Sbjct: 56  FAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG--VITRKVNIQVGDVNDNAPTFHN- 112
Query: 536 SCYPITIPENS 546
             Y + IPEN+
Sbjct: 113 QPYSVRIPENT 123

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 56  FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
           F  YL    I ED P+G +V  +++ D         +++ +      + S  F ++  +G
Sbjct: 14  FDTYLL---ISEDTPVGSSVTQLLARD----MDNDPLVFGVPG---EEASRFFAVEPDTG 63
Query: 116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
            + + + LDRET  E+ +E      S S +       + I++ DVNDNAP +   P ++ 
Sbjct: 64  VVWLRQPLDRETKSEFTVEF-----SVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVR 118
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
           + E+T VG+ I+   ATD D G+ G + Y      P    F++D   G +T++Q LDYE 
Sbjct: 119 IPENTPVGTPIFIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEV 175
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDL 269
             ++ L V  TDQ  + +  LST     +++ DL
Sbjct: 176 TQAYQLTVNATDQ--DKTRPLSTLANLAIIITDL 207

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
           ++EDT VGS++    A D D   N  L +G+  +      F+V+  TG + L QPLD ET
Sbjct: 20  ISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEE-ASRFFAVEPDTGVVWLRQPLDRET 75
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
            + F +   V+D    I+ +++      + V D+NDNAP F +  +   + + E T VG+
Sbjct: 76  KSEFTVEFSVSDHQGVITRKVN------IQVGDVNDNAPTFHN--QPYSVRIPENTPVGT 127
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLN 355
            +  + A D D G  G V Y  S       F +D  +GI++   VI E D++      L 
Sbjct: 128 PIFIVNATDPDLGAGGSVLY--SFQPPSPFFAIDSARGIVT---VIQELDYEVTQAYQLT 182
Query: 356 ITASDH 361
           + A+D 
Sbjct: 183 VNATDQ 188

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 416 YGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM 475
           + N+ +    L+SED   G+ + +++AR             D     L + +P   A   
Sbjct: 9   FTNHFFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVPGEEASRF 55
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSG 535
           F ++ +TGVV L + LDRET  ++ +   V+D +     T  V I + DVNDNAP F + 
Sbjct: 56  FAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG--VITRKVNIQVGDVNDNAPTFHN- 112
Query: 536 SCYPITIPENS 546
             Y + IPEN+
Sbjct: 113 QPYSVRIPENT 123

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 100/192 (52%), Gaps = 15/192 (7%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 34  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 91
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 92  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 151
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 152 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 207
Query: 262 ARVVVKDLNDNA 273
           A + VKD+NDNA
Sbjct: 208 AVITVKDINDNA 219

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 423 EVFL--VSEDAIPGTYIIKVVARSPSTYV--YHMYLISDFSGYNLTYMIPAGVADDMFKI 478
           EVF   V+E A+PGT ++KV A      V  Y+  +      Y +    P     +MF +
Sbjct: 112 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI-----AYTIVSQDPELPHKNMFTV 166
Query: 479 DAETGVVT-LARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILDVNDNA 529
           + +TGV++ L   LDRE+   Y LVV   D +     TT    IT+ D+NDNA
Sbjct: 167 NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNA 219

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 20/214 (9%)
Query: 56  FKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSG 115
           F  YL    I ED P+G +V  +++ D             +  +S  + S  F ++  +G
Sbjct: 14  FDTYLL---ISEDTPVGSSVTQLLARDMDNDP-------LVFGVSGEEASRFFAVEPDTG 63
Query: 116 SLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP 175
            + + + LDRET  E+ +E      S S +       + I++  VNDNAP +   P ++ 
Sbjct: 64  VVWLRQPLDRETKSEFTVEF-----SVSDHQGVITRKVNIQVGGVNDNAPTFHNQPYSVR 118
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
           + E+T VG+ I+   ATD D G+ G + Y      P    F++D   G +T++Q LDYE 
Sbjct: 119 IPENTPVGTPIFIVNATDPDLGAGGSVLYSF---QPPSPFFAIDSARGIVTVIQELDYEV 175
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDL 269
             ++ L V  TDQ  + +  LST     +++ DL
Sbjct: 176 TQAYQLTVNATDQ--DKTRPLSTLANLAIIITDL 207

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
           ++EDT VGS++    A D D   N  L +G V        F+V+  TG + L QPLD ET
Sbjct: 20  ISEDTPVGSSVTQLLARDMD---NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPLDRET 75
Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
            + F +   V+D    I+ +++      + V  +NDNAP F +  +   + + E T VG+
Sbjct: 76  KSEFTVEFSVSDHQGVITRKVN------IQVGGVNDNAPTFHN--QPYSVRIPENTPVGT 127
Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLN 355
            +  + A D D G  G V Y  S       F +D  +GI++   VI E D++      L 
Sbjct: 128 PIFIVNATDPDLGAGGSVLY--SFQPPSPFFAIDSARGIVT---VIQELDYEVTQAYQLT 182
Query: 356 ITASDH 361
           + A+D 
Sbjct: 183 VNATDQ 188

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 416 YGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM 475
           + N+ +    L+SED   G+ + +++AR             D     L + +    A   
Sbjct: 9   FTNHFFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVSGEEASRF 55
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSG 535
           F ++ +TGVV L + LDRET  ++ +   V+D +     T  V I +  VNDNAP F + 
Sbjct: 56  FAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG--VITRKVNIQVGGVNDNAPTFHN- 112
Query: 536 SCYPITIPENS 546
             Y + IPEN+
Sbjct: 113 QPYSVRIPENT 123

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 17/209 (8%)
Query: 70  PIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCP 129
           P    VG VV +D   R  G     +   +   D  G F I++++GS+ V R LDRET  
Sbjct: 17  PFPRDVGKVVDSD---RPEGSKFRLTGKGVD-QDPKGTFRINENTGSVSVTRTLDRETIA 72
Query: 130 EYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNF 189
            Y+L V   D S  +      V +++ ++D NDN P + E P    V E +  G+T+   
Sbjct: 73  TYQLYVETTDASGKT--LEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRM 130
Query: 190 TATDADDGS--NGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQP--LDYETLTS--F 239
           TA DADD +  N  LRY + +Q P+    N F +D   G + T++ P  LD ETL +  +
Sbjct: 131 TAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKY 190
Query: 240 ILVVKVTDQAANISERLSTSLTARVVVKD 268
            L+++  D A  +   L+ + TA +V+ D
Sbjct: 191 ELIIEAQDMAG-LDVGLTGTATATIVIDD 218

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 18/196 (9%)
Query: 170 NPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQ 229
           +P+ IP N+       +     +D  +GS   L    V Q P+G  F ++  TG++++ +
Sbjct: 6   SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGT-FRINENTGSVSVTR 64
Query: 230 PLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLI-YVS 288
            LD ET+ ++ L V+ TD +      L   +   V+V D NDN P+F     G  I +V 
Sbjct: 65  TLDRETIATYQLYVETTDASGKT---LEGPVPLEVIVIDQNDNRPIF---REGPYIGHVM 118
Query: 289 EQTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDA----RFHLDHDKG----ILSLA 338
           E +  G+ V +MTA D D  + DN  + Y I     D      F++D +KG    ++S A
Sbjct: 119 EGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPA 178
Query: 339 RVISEYDHQSKFRAVL 354
            +  E     K+  ++
Sbjct: 179 LLDRETLENPKYELII 194

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 476 FKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TTNVFITILDVNDNAPEFKS 534
           F+I+  TG V++ R+LDRET+  Y L V  TD+     +    + + ++D NDN P F+ 
Sbjct: 51  FRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFRE 110
Query: 535 G 535
           G
Sbjct: 111 G 111

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 105 SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNA 164
           +G F I+  SG L V + LDRE    + L   A+D +   N   + + I I ++D+NDN 
Sbjct: 48  TGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNR 105
Query: 165 PRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS--NGELRYGLVRQY---PEGNHFSVD 219
           P +        V E +  G+ +   TA DADD +  NG LRY +V Q    P  N F+++
Sbjct: 106 PEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTIN 165
Query: 220 HLTG-TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
           + TG  +T+   LD E +  + L+++ TD   N +  LS + TA + V D
Sbjct: 166 NETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 43/160 (26%)
Query: 370 LVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSE 429
           +VIN++   ++ + P FL   ++ +V E + PGTY++ V A             +     
Sbjct: 94  IVINVID--MNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTA-------------IDADDP 138
Query: 430 DAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETG-VVTLA 488
           +A+ G    ++V+++PST                        + +MF I+ ETG ++T+A
Sbjct: 139 NALNGMLRYRIVSQAPSTP-----------------------SPNMFTINNETGDIITVA 175
Query: 489 RSLDRETVDQYNLVVHVTDSKS----GDYDTTNVFITILD 524
             LDRE V QY L++  TD +     G  +T    IT+ D
Sbjct: 176 AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILDVNDNAPEFK 533
           +F I+  +G +++ + LDRE + +++L  H  D      +   ++ I ++D+NDN PEF 
Sbjct: 50  IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFL 109
Query: 534 SGSCYPITIPENSEAAN-VHTFIATD 558
               +  ++PE S+    V T  A D
Sbjct: 110 H-QVWNGSVPEGSKPGTYVMTVTAID 134

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 105 SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNA 164
           +G F I+  SG L V + LDRE    + L   A+D +   N   + + I I ++D+NDN 
Sbjct: 48  TGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN--GNQVENPIDIVINVIDMNDNR 105
Query: 165 PRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS--NGELRYGLVRQY---PEGNHFSVD 219
           P +        V E +  G+ +   TA DADD +  NG LRY ++ Q    P  N F+++
Sbjct: 106 PEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTIN 165
Query: 220 HLTG-TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
           + TG  +T+   LD E +  + L+++ TD   N +  LS + TA + V D
Sbjct: 166 NETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 43/160 (26%)
Query: 370 LVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSE 429
           +VIN++   ++ + P FL   ++ +V E + PGTY++ V A             +     
Sbjct: 94  IVINVID--MNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTA-------------IDADDP 138
Query: 430 DAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETG-VVTLA 488
           +A+ G    ++++++PST                        + +MF I+ ETG ++T+A
Sbjct: 139 NALNGMLRYRILSQAPSTP-----------------------SPNMFTINNETGDIITVA 175
Query: 489 RSLDRETVDQYNLVVHVTDSKS----GDYDTTNVFITILD 524
             LDRE V QY L++  TD +     G  +T    IT+ D
Sbjct: 176 AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTT-NVFITILDVNDNAPEFK 533
           +F I+  +G +++ + LDRE + +++L  H  D      +   ++ I ++D+NDN PEF 
Sbjct: 50  IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFL 109
Query: 534 SGSCYPITIPENSEAAN-VHTFIATD 558
               +  ++PE S+    V T  A D
Sbjct: 110 H-QVWNGSVPEGSKPGTYVMTVTAID 134

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 102/209 (48%), Gaps = 17/209 (8%)
Query: 70  PIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCP 129
           P   +VG V+ ++ T    G     S   +   D  G F I++ SG + V R LDRE   
Sbjct: 16  PFPRSVGKVIRSEGTE---GAKFRLSGKGVD-QDPKGIFRINEISGDVSVTRPLDREAIA 71
Query: 130 EYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNF 189
            Y+LEV   D S         V + I ++D NDN P + E P    V E +  G+T+   
Sbjct: 72  NYQLEVEVTDLSGKI--IDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRM 129
Query: 190 TATDADDGS--NGELRYGLVRQ---YPEGNHFSVDHLTGTL-TLLQP--LDYETLTS--F 239
           TA DADD S  N  LRY +++Q    P  N F +D   G + T++ P  LD ET+ +  +
Sbjct: 130 TAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKY 189
Query: 240 ILVVKVTDQAANISERLSTSLTARVVVKD 268
            LV++  D   +    L+ + TA +++ D
Sbjct: 190 ELVIEAKDMGGH-DVGLTGTATATILIDD 217

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 16/201 (7%)
Query: 171 PLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQP 230
           P+ IP N+      ++     ++  +G+   L    V Q P+G  F ++ ++G +++ +P
Sbjct: 6   PILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKG-IFRINEISGDVSVTRP 64
Query: 231 LDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLI-YVSE 289
           LD E + ++ L V+VTD +  I   +   +   + V D NDN P+F     G  + +V E
Sbjct: 65  LDREAIANYQLEVEVTDLSGKI---IDGPVRLDISVIDQNDNRPMF---KEGPYVGHVME 118
Query: 290 QTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDA----RFHLDHDKG--ILSLARVI 341
            +  G+ V +MTA D D  S DN  + Y I            F++D +KG  +  ++ V+
Sbjct: 119 GSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVL 178
Query: 342 SEYDHQSKFRAVLNITASDHG 362
            + +     +  L I A D G
Sbjct: 179 LDRETMETPKYELVIEAKDMG 199

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TTNVFITILDVNDNAPEFK 533
           +F+I+  +G V++ R LDRE +  Y L V VTD      D    + I+++D NDN P FK
Sbjct: 49  IFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFK 108
Query: 534 SG 535
            G
Sbjct: 109 EG 110

>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 19/189 (10%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+    SSN ++ 
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV----SSNGEAV 88
Query: 150 A--VAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRY 204
           A  + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y
Sbjct: 89  ADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 205 GLVRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTS 259
            +V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTT 204
Query: 260 LTARVVVKD 268
             A + VKD
Sbjct: 205 AKAVITVKD 213

>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + + + LDRE + +Y L  H V+ +     D   + IT+ D N
Sbjct: 47  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQN 102
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 103 DNRPEF 108

>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 91  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
           A + VKD
Sbjct: 207 AVITVKD 213

>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + + + LDRE + +Y L  H V+ +     D   + IT+ D N
Sbjct: 47  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 103 DNRPEF 108

>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 91  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
           A + VKD
Sbjct: 207 AVITVKD 213

>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + + + LDRE + +Y L  H V+ +     D   + IT+ D N
Sbjct: 47  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 103 DNRPEF 108

>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 91  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
           A + VKD
Sbjct: 207 AVITVKD 213

>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + + + LDRE + +Y L  H V+ +     D   + IT+ D N
Sbjct: 47  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 103 DNRPEF 108

>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 91  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
           A + VKD
Sbjct: 207 AVITVKD 213

>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + + + LDRE + +Y L  H V+ +     D   + IT+ D N
Sbjct: 47  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 103 DNRPEF 108

>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 32  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 89
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 90  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 149
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 150 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 205
Query: 262 ARVVVKD 268
           A + VKD
Sbjct: 206 AVITVKD 212

>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + + + LDRE + +Y L  H V+ +     D   + IT+ D N
Sbjct: 46  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 101
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 102 DNRPEF 107

>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 91  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
           A + VKD
Sbjct: 207 AVITVKD 213

>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + + + LDRE + +Y L  H V+ +     D   + IT+ D N
Sbjct: 47  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 103 DNRPEF 108

>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 35  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 92
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 93  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 152
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 153 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 208
Query: 262 ARVVVKD 268
           A + VKD
Sbjct: 209 AVITVKD 215

>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + + + LDRE + +Y L  H V+ +     D   + IT+ D N
Sbjct: 49  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 104
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 105 DNRPEF 110

>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A   S++      
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHA--DSSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 91  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++L   LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
           A + VKD
Sbjct: 207 AVITVKD 213

>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY--DTTNVFITILDV 525
           P GV    F I+ ETG + + + LDRE + +Y L  H  DS +G+   D   + IT+ D 
Sbjct: 47  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHA-DSSNGEAVEDPMEIVITVTDQ 101
Query: 526 NDNAPEF 532
           NDN PEF
Sbjct: 102 NDNRPEF 108

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 90  GHVMYSLTSL-SPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQS 148
           G V YS+T   + T   G F I++ +G L V   LDRE    Y L   A+  S++ N   
Sbjct: 32  GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV--SSNGNAVE 89
Query: 149 SAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYG 205
             + I I + D NDN P + +      V E  L G+++   TATDADD     N  + Y 
Sbjct: 90  DPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYT 149
Query: 206 LVRQYPE---GNHFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTD 247
           ++ Q PE    N F+++  TG ++++   LD E+  ++ LVV+  D
Sbjct: 150 ILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + +   LDRE +  Y L  H V+ + +   D   + IT+ D N
Sbjct: 47  PVGV----FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQN 102
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 103 DNKPEF 108

>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 90
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGL 206
            + I I + D NDN P + +      V E  + G+++   +ATDADD     N  + Y +
Sbjct: 91  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 207 VRQYPE---GNHFSVDHLTGTLTL-LQPLDYETLTSFILVVKVTDQAANIS-ERLSTSLT 261
           V Q PE    N F+V+  TG +++    LD E+  ++ LVV    QAA++  E LST+  
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVV----QAADLQGEGLSTTAK 206
Query: 262 ARVVVKD 268
           A + VKD
Sbjct: 207 AVITVKD 213

>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + + + LDRE + +Y L  H V+ +     D   + IT+ D N
Sbjct: 47  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 102
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 103 DNRPEF 108

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 43/307 (14%)
Query: 93  MYSLTSLSP-TDHS-----------GAFDIDKSSGSLVVAR-----QLDRETCPEYKLEV 135
           +++L +  P TDH+           G F++D+ SG +V  R     QLD E    Y L V
Sbjct: 132 VFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSG-VVRTRGTDLFQLDME----YVLYV 186
Query: 136 RALDTSTSSNPQ--SSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATD 193
           +A D +   + +   S    ++ IV     AP++        + E+    S I +  A  
Sbjct: 187 KAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKS 245
Query: 194 ADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTS---FILVVKVTDQAA 250
             D    E+RY L  Q      F++   +G + L + LD+E L     + L+V  T+ + 
Sbjct: 246 FADR---EIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG 302
Query: 251 NISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDN 310
                 STS+   + V D+NDNAP F  P   +   V E   +G+ + ++ A+D DSG N
Sbjct: 303 G----FSTSVDLTIRVTDVNDNAPKFELPDYQAH-NVDEDIPLGTSILRVKAMDSDSGSN 357
Query: 311 GRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSL 370
             + Y++S    D  F +D + GI+   + +   ++ + +  +  +TA D G PPKS   
Sbjct: 358 AEIEYLVS----DDHFAVDSN-GIIVNNKQLDADNNNAYYEFI--VTAKDKGEPPKSGVA 410
Query: 371 VINILSE 377
            + + ++
Sbjct: 411 TVRVYTK 417

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 119/321 (37%), Gaps = 60/321 (18%)
Query: 223 GTLTLLQPLDYETL---TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSP 279
           G + + +  DYE L    +    V +T+   N   + + +    ++VKD+ND  P F++ 
Sbjct: 55  GAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINR 114
Query: 280 TRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLAR 339
                  V       + V  + A D D+  N  + Y I       RF +D   G++   R
Sbjct: 115 PLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVV---R 169
Query: 340 VISEYDHQSKFRAVLNITASDHGIP---PKSSSLVINILSETVSTSLPTFLSPSYHANVS 396
                  Q     VL + A D        +  S     LS       P F  PSY A + 
Sbjct: 170 TRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIP 229
Query: 397 EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLIS 456
           E+    + II + A+S                                            
Sbjct: 230 ENQKKDSDIISIKAKS-------------------------------------------- 245
Query: 457 DFSGYNLTYMIPA-GVADDMFKIDAETGVVTLARSLDRETVDQ---YNLVVHVTDSKSGD 512
            F+   + Y + A G     F I   +G+V LA+ LD E + Q   Y+L+V  T+   G 
Sbjct: 246 -FADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF 304
Query: 513 YDTTNVFITILDVNDNAPEFK 533
             + ++ I + DVNDNAP+F+
Sbjct: 305 STSVDLTIRVTDVNDNAPKFE 325

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 88  GGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSS--N 145
           G G + Y L+     D    F I++++G +   ++LDRE  P Y L  +A++  T     
Sbjct: 31  GDGSLKYILSGDGAGD---LFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVE 87
Query: 146 PQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADD---GSNGEL 202
           P+S  +   I+I D+NDN P + ++  T  V E   VG+ +   TATDADD   G++ ++
Sbjct: 88  PESEFI---IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKV 144
Query: 203 RYGLVRQYPEGNHFSVDHLTGTL-TLLQPLDYETLTSFILVVKVTDQAANISERLSTSLT 261
            Y +++  P   +FSV+  TG + T L  +D E    + +V++  D    +   LS + T
Sbjct: 145 VYSILQGQP---YFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMG-GLSGTTT 200
Query: 262 ARVVVKD 268
             + + D
Sbjct: 201 VNITLTD 207

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 436 YIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRET 495
           ++++    S   YV  ++   D    +L Y++    A D+F I+  TG +   + LDRE 
Sbjct: 8   FLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREE 67
Query: 496 VDQYNLVVHVTDSKSGD--YDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHT 553
              Y L     + ++G      +   I I D+NDN P F +   Y  T+P   E A+V T
Sbjct: 68  KPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIF-TKDVYTATVP---EMADVGT 123
Query: 554 FI 555
           F+
Sbjct: 124 FV 125

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 17/193 (8%)
Query: 87  AGGGHVMYSLTSLSPTDHSGA---FDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTS 143
           +G G++ Y L+        GA   F ID  SG++   + LDRE   +Y L  +A+D  T+
Sbjct: 31  SGDGNIKYILSG------EGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN 84
Query: 144 SNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADD---GSNG 200
             P        +++ D+NDN P +        V E + VG+++   TA+DADD   G++ 
Sbjct: 85  -RPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSA 143
Query: 201 ELRYGLVRQYPEGNHFSVDHLTGTL-TLLQPLDYETLTSFILVVKVTDQAANISERLSTS 259
           +L Y ++   P   +FSV+  TG + T L  +D E    + +V++  D   ++     T+
Sbjct: 144 KLVYSILEGQP---YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTT 200
Query: 260 LTARVVVKDLNDN 272
                +  D  D+
Sbjct: 201 KVTITLTDDYKDD 213

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 92/232 (39%), Gaps = 62/232 (26%)
Query: 304 DQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGI 363
           D DSGD G + Y++SG      F +D   G +   + +   D + + +  L   A D   
Sbjct: 28  DIDSGD-GNIKYILSGEGAGTIFVIDDKSGNIHATKTL---DREERAQYTLMAQAVDRDT 83
Query: 364 -----PPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPS--TY 416
                PP  S  ++ +  + ++ + P FL   YHANV E +  GT +I+V A      TY
Sbjct: 84  NRPLEPP--SEFIVKV--QDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTY 139
Query: 417 GNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMF 476
           GN                                            L Y I  G     F
Sbjct: 140 GNSA-----------------------------------------KLVYSILEGQP--YF 156
Query: 477 KIDAETGVVTLAR-SLDRETVDQYNLVVHVTD---SKSGDYDTTNVFITILD 524
            ++A+TG++  A  ++DRE  ++Y++V+   D      G   TT V IT+ D
Sbjct: 157 SVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTD 208

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 462 NLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD--YDTTNVF 519
           N+ Y++    A  +F ID ++G +   ++LDRE   QY L+    D  +       +   
Sbjct: 35  NIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFI 94
Query: 520 ITILDVNDNAPEFKSGSCYPITIPENS 546
           + + D+NDN PEF     Y   +PE S
Sbjct: 95  VKVQDINDNPPEFLH-EIYHANVPERS 120

>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And Protocadherin-15 Ec1-2 Form I Length = 242

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 11/113 (9%)
Query: 153 IKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIW-----NFTATDADDGSNGELRYGLV 207
           ++I + D NDN+P +        VNE T VG+TI+     +  ATD DDG NG++ Y ++
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEY-VI 171
Query: 208 RQYPE----GNHFSVD-HLTGTLTLLQPLDYETLTSFILVVKVTDQAANISER 255
           +  PE     + F +   LTG + L + L+YE  T + ++++  D+A N++ER
Sbjct: 172 QYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNER 224

>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 68  DVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRET 127
           D P+   VG + S+      G  + MY +   S    +  F +    G +    +LDRE 
Sbjct: 14  DSPLPHHVGKLTSS-----VGNKNAMYIIEGESA---NTIFKVQGYDGDIYAFERLDREK 65
Query: 128 CPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIW 187
             EY+L    +D   + + +  +  I I++ D+NDNAP + +      V E + +G+++ 
Sbjct: 66  KAEYELTAHIIDRRNNRSLEPPSKFI-IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVT 124
Query: 188 NFTATDADD---GSNGELRYGLVRQYPEGN-HFSVDHLTGTLTLLQPLDYETLTSFILVV 243
             TA DADD     +  + Y +++    GN +F+VD      T    LD E+ +++ ++V
Sbjct: 125 KVTAEDADDPTVAGHATVTYQIIK----GNEYFTVDDSGVIFTARADLDRESQSAYEIIV 180
Query: 244 KVTDQAANISERLSTSLTARVVVK 267
           K  D      E    S TA V+++
Sbjct: 181 KAKDALGLTGE----SSTATVIIR 200

>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 216 FSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV 275
           F V    G +   + LD E    + L   + D+  N S    +    +V   D+NDNAP+
Sbjct: 46  FKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKV--SDINDNAPI 103
Query: 276 FVSPT-RGSLIYVSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARFHLDHD 331
           FV     GS   V E +R+G+ VTK+TA D D      +  VTY I  GNE   F +D D
Sbjct: 104 FVQKIFNGS---VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE--YFTVD-D 157
Query: 332 KGILSLARVISEYDHQSKFRAVL 354
            G++  AR   + + QS +  ++
Sbjct: 158 SGVIFTARADLDRESQSAYEIIV 180

>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 454 LISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD- 512
           L S     N  Y+I    A+ +FK+    G +     LDRE   +Y L  H+ D ++   
Sbjct: 24  LTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRS 83
Query: 513 -YDTTNVFITILDVNDNAPEFKSGSCYPITIPENS 546
               +   I + D+NDNAP F     +  ++PE S
Sbjct: 84  LEPPSKFIIKVSDINDNAPIFVQ-KIFNGSVPEMS 117

>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I Length = 316

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 115/317 (36%), Gaps = 60/317 (18%)
Query: 223 GTLTLLQPLDYETL---TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSP 279
           G + + +  DYE L    +    V +T+   N   + + +    ++VKD+ND  P F++ 
Sbjct: 50  GAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINR 109
Query: 280 TRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLAR 339
                  V       + V  + A D D+  N  + Y I       RF +D   G++   R
Sbjct: 110 PLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVV---R 164
Query: 340 VISEYDHQSKFRAVLNITASDHGIP---PKSSSLVINILSETVSTSLPTFLSPSYHANVS 396
                  Q     VL + A D        +  S     LS       P F  PSY A + 
Sbjct: 165 TRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIP 224
Query: 397 EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLIS 456
           E+    + II + A+S                                            
Sbjct: 225 ENQKKDSDIISIKAKS-------------------------------------------- 240
Query: 457 DFSGYNLTYMIPA-GVADDMFKIDAETGVVTLARSLDRETVDQ---YNLVVHVTDSKSGD 512
            F+   + Y + A G     F I   +G+V LA+ LD E + Q   Y+L+V  T+   G 
Sbjct: 241 -FADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF 299
Query: 513 YDTTNVFITILDVNDNA 529
             + ++ I + DVNDNA
Sbjct: 300 STSVDLTIRVTDVNDNA 316

>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human Protocadherin 7 Length = 119

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 270 NDNAPVFVSPTRGSLIY---VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR- 325
           NDN+P F        +Y   ++E +  G+ + ++ A D D G NG++ YV     E  R 
Sbjct: 8   NDNSPRFEKS-----VYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRR 62
Query: 326 -FHLDHDKGILS-LARVISEYDHQSKFRAVLNITASDHGIPPKS--SSLVINILSE 377
              LD   G LS L R+  E  +Q +F     + A D G PPK+  +++V+NI  E
Sbjct: 63  LLRLDETSGWLSVLHRIDREEVNQLRF----TVMARDRGQPPKTDKATVVLNIKDE 114

>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNH--FSV 218
           NDN P + E  + + + E+  VG+++    ATDAD GSN E+RY    Q        F++
Sbjct: 8   NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 219 DHLTGTLTLLQPLDYE 234
           ++ TG +T+ + LD E
Sbjct: 68  NNTTGLITVQRSLDRE 83

>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The Calcium Bound State, Nmr, 20 Structures Length = 146

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 91  HVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSS 149
            V YS+T         G F I++ +G L V + LDRE   +Y L   A+  S++      
Sbjct: 35  KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV--SSNGEAVED 92
Query: 150 AVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSN 199
            + I I + D NDN P + +      V E  + G+++   +ATDADD  N
Sbjct: 93  PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN 142

>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The Calcium Bound State, Nmr, 20 Structures Length = 146

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVH-VTDSKSGDYDTTNVFITILDVN 526
           P GV    F I+ ETG + + + LDRE + +Y L  H V+ +     D   + IT+ D N
Sbjct: 49  PVGV----FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQN 104
Query: 527 DNAPEF 532
           DN PEF
Sbjct: 105 DNRPEF 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	570
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	4e-92
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	3e-72
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	2e-55
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-53
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	9e-83
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	1e-69
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	5e-54
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-53
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	9e-81
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	8e-70
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	2e-57
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	3e-50
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-80
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	4e-67
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	9e-66
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	9e-58
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	7e-49
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-30
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	7e-66
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	4e-44
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	6e-39
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	2e-36
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	1e-61
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	3e-61
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	4e-60
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	7e-37
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	3e-36
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	2e-59
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	1e-49
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	1e-40
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	3e-35
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	1e-52
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	5e-42
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	4e-41
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	9e-29
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	2e-46
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	1e-36
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	8e-34
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	2e-28
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	6e-19
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	1e-44
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	1e-36
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	3e-33
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	5e-21
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	1e-12
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	2e-43
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	8e-37
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	8e-29
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	3e-23
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	5e-13
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	5e-43
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	7e-34
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	3e-30
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	4e-27
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	2e-13
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	3e-42
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	2e-31
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	3e-29
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	6e-20
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	2e-16
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	6e-42
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-36
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	5e-30
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	9e-21
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-11
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	3e-40
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	4e-40
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	9e-30
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	5e-23
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	2e-11
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	9e-25
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	2e-17
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	8e-17
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	2e-14
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	3e-04
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	6e-24
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	3e-19
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	5e-18
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	8e-12
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	7e-24
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	3e-20
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	2e-19
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	6e-09
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	1e-20
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	1e-15
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	2e-11
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	5e-11
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	1e-04
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	5e-19
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	3e-13
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	7e-12
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	7e-12
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	1e-16
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	2e-12
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	6e-12
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	2e-11
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	1e-16
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	7e-12
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	1e-11
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	2e-11
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-16
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-13
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	3e-13
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	5e-09
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	6e-16
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	8e-13
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	5e-12
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	8e-08
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	1e-15
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	5e-12
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	2e-11
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	4e-07
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	4e-04
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	1e-05

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  292 bits (750), Expect = 4e-92
 Identities = 134/522 (25%), Positives = 205/522 (39%), Gaps = 88/522 (16%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQ 122
            + E+    F    +V   S  R     + YS+T        +G F I+  SG L V + 
Sbjct: 8   NLPENSRGPF-PQELVRIRSD-RDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65

Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLV 182
           LDRE    + L   A+D +   N   + + I I ++D+NDN P +        V E +  
Sbjct: 66  LDRELIARFHLRAHAVDING--NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123

Query: 183 GSTIWNFTATDADD--GSNGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYETL 236
           G+ +   TA DADD    NG LRY ++ Q P     N F++++ TG + T+   LD E +
Sbjct: 124 GTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKV 183

Query: 237 TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSH 296
             + L+++ TD   N +  LS + TA + V D+NDN P F + T      V E  RV   
Sbjct: 184 QQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYG--EVPE-NRVDVI 240

Query: 297 VTKMTAVDQDSGDNG--RVTYVISGGNEDARFHLDHDK----GILSLARVISEYDHQSKF 350
           V  +T  D+D          Y ISGG+   RF +  D     G++++ + I  ++    F
Sbjct: 241 VANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPID-FETNRMF 299

Query: 351 RAVLNITASDHGI------PPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTY 404
             VL + A +          P  S+  +++    V+ + P F          E    GT 
Sbjct: 300 --VLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTM 356

Query: 405 IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLT 464
           +  + A+ P  Y                               Y      +SD + +   
Sbjct: 357 LTTLTAQDPDRYMQ-------------------------QNIRYT----KLSDPANW--- 384

Query: 465 YMIPAGVADDMFKIDAETGVVTLARSLDRETV----DQYNLVVHVTD----SKSGDYDTT 516
                       KID   G +T    LDRE+     + YN     +D      SG   T 
Sbjct: 385 -----------LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSG---TG 430

Query: 517 NVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
            + I +LD+NDNAP+            E  E  N     A D
Sbjct: 431 TLQIYLLDINDNAPQVLP---QEAETCETPE-PNSINITALD 468

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  240 bits (614), Expect = 3e-72
 Identities = 101/493 (20%), Positives = 171/493 (34%), Gaps = 73/493 (14%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGG-GHVMYSLTSLSPTD-HSGAFDIDKSSGSLV-VA 120
            + E    G  V  V + D+       G + Y + S +P+      F I+  +G ++ VA
Sbjct: 116 SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVA 175

Query: 121 RQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVNDNAPRWGENPLTIPVNED 179
             LDRE   +Y L ++A D   +     S  A   I + DVNDN P +        V E+
Sbjct: 176 AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN 235

Query: 180 TLVGSTIWNFTATDADDGSNGELR--YGLVRQYPEGNHFSV----DHLTGTLTLLQPLDY 233
             V   + N T TD D          Y +    P G  F++    +   G +T+++P+D+
Sbjct: 236 R-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTG-RFAILTDPNSNDGLVTVVKPIDF 293

Query: 234 ETLTSFILVVKVTDQA---ANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQ 290
           ET   F+L V   +Q      I     ++ T  V V D+N+N P F       +I   E 
Sbjct: 294 ETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNP--KIIRQEEG 350

Query: 291 TRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI---SEYDHQ 347
              G+ +T +TA D D      + Y       +    +D   G ++   V+   S     
Sbjct: 351 LHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKN 409

Query: 348 SKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIK 407
           + + A     ASD+GIPP S +  + I    ++ + P  L         E   P +  I 
Sbjct: 410 NIYNAT--FLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAE--TCETPEPNSINIT 465

Query: 408 VVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMI 467
            +                    D  P                           +     +
Sbjct: 466 ALDY------------------DIDPNAGP-----------------------FAFDLPL 484

Query: 468 PAGVADDMFKIDAETG-VVTLARSLDRETVDQYNLVVHVTDSKSGD---YDTTNVFITIL 523
                   + I+   G    L   +       Y + + +TD  SG+    + + + + + 
Sbjct: 485 SPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITD--SGNPPKSNISILRVKVC 542

Query: 524 DVNDNAPEFKSGS 536
             + N        
Sbjct: 543 QCDSNGDCTDVHH 555

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  195 bits (497), Expect = 2e-55
 Identities = 88/418 (21%), Positives = 149/418 (35%), Gaps = 81/418 (19%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTG 223
           W   P+ +P N     G          +D   N  LRY +       P    F ++ ++G
Sbjct: 2   WVIPPINLPENSR---GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISG 58

Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV-SPTRG 282
            L++ +PLD E +  F L     D       ++   +   + V D+NDN P F+     G
Sbjct: 59  QLSVTKPLDRELIARFHLRAHAVDIN---GNQVENPIDIVINVIDMNDNRPEFLHQVWNG 115

Query: 283 SLIYVSEQTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDAR----FHLDHDKGILS 336
           S   V E ++ G++V  +TA+D D  +  NG + Y I            F ++++ G + 
Sbjct: 116 S---VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDII 172

Query: 337 LARVISEYDHQSKFRAVLNITASDHGIPPK---SSSLVINILSETVSTSLPTFLSPSYHA 393
              V +  D +   +  L I A+D    P    S++    I    V+ + P F + +++ 
Sbjct: 173 T--VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYG 230

Query: 394 NVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMY 453
            V E+      +  +                     D                       
Sbjct: 231 EVPENR-VDVIVANLTVTDK----------------D----------------------- 250

Query: 454 LISDFSGY-NLTYMIPAGVADDMFKI----DAETGVVTLARSLDRETVDQYNLVVHVTD- 507
                +   N  Y I  G     F I    ++  G+VT+ + +D ET   + L V   + 
Sbjct: 251 --QPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQ 308

Query: 508 ------SKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
                  +     T  V +T++DVN+N P F       I   E   A   + T  A D
Sbjct: 309 VPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNP-KIIRQEEGLHAGTMLTTLTAQD 364

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  190 bits (484), Expect = 1e-53
 Identities = 72/347 (20%), Positives = 127/347 (36%), Gaps = 36/347 (10%)

Query: 64  EIKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGAFDIDKSS----GSLV 118
           E+ E+      V N+  TD         +  Y ++     D +G F I        G + 
Sbjct: 231 EVPENRV-DVIVANLTVTDKDQPHTPAWNAAYRISG---GDPTGRFAILTDPNSNDGLVT 286

Query: 119 VARQLDRETCPEYKLEVRALD-----TSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLT 173
           V + +D ET   + L V A +           PQS+A  + + ++DVN+N P +  NP  
Sbjct: 287 VVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTAT-VSVTVIDVNEN-PYFAPNPKI 344

Query: 174 IPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDY 233
           I   E    G+ +   TA D D      +RY  +      N   +D + G +T +  LD 
Sbjct: 345 IRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLS--DPANWLKIDPVNGQITTIAVLDR 402

Query: 234 ETLT----SFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSE 289
           E+       +      +D        +S + T ++ + D+NDNAP  +           E
Sbjct: 403 ESPNVKNNIYNATFLASDNG---IPPMSGTGTLQIYLLDINDNAPQVLPQE----AETCE 455

Query: 290 QTRVGSHVTKMTAVDQDSGDNG---RVTYVISGGNEDARFHLDHDKGILSLARVISEYDH 346
                     +TA+D D   N         +S       + ++   G    A++  +   
Sbjct: 456 TPEPN--SINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNG--DFAQLNLKIKF 511

Query: 347 QSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHA 393
                  + I  +D G PPKS+  ++ +      ++        +H 
Sbjct: 512 LEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  268 bits (686), Expect = 9e-83
 Identities = 125/523 (23%), Positives = 200/523 (38%), Gaps = 96/523 (18%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQ 122
              E+    F   N+V   S  R     V YS+T         G F I++ +G L V + 
Sbjct: 8   SCPENEKGEF-PKNLVQIKSN-RDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65

Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLV 182
           LDRE   +Y L   A+ ++         + I I + D NDN P + +      V E  + 
Sbjct: 66  LDREAIAKYILYSHAVSSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123

Query: 183 GSTIWNFTATDADDG---SNGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYET 235
           G+++   +ATDADD     N  + Y +V Q PE    N F+V+  TG +  L   LD E+
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES 183

Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
             ++ LVV+  D      E LST+  A + VKD+NDNAPVF   T      V E   V +
Sbjct: 184 YPTYTLVVQAADLQ---GEGLSTTAKAVITVKDINDNAPVFNPST--YQGQVPE-NEVNA 237

Query: 296 HVTKMTAVDQDSGDNG--RVTYVISGGNEDARFHLDHDK----GILSLARVISEYDHQSK 349
            +  +   D D+ +    +  Y +    +  +F +  D     GIL  A+ +  ++ + +
Sbjct: 238 RIATLKVTDDDAPNTPAWKAVYTVVNDPDQ-QFVVVTDPTTNDGILKTAKGLD-FEAKQQ 295

Query: 350 FRAVLNITASDHGI---PPKSSSLVINILSETVSTS--LPTFLSPSYHANVSEDAIPGTY 404
           +  +L++   +          S+  + +    V      P F+       V ED   G  
Sbjct: 296 Y--ILHVRVENEEPFEGSLVPSTATVTV---DVVDVNEAPIFMPAERRVEVPEDFGVGQE 350

Query: 405 IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLT 464
           I    AR P T+ +                            TY     +  D + +   
Sbjct: 351 ITSYTAREPDTFMD-------------------------QKITYR----IWRDTANW--- 378

Query: 465 YMIPAGVADDMFKIDAETGVVTLARSLDRETV-----DQYNLVVHVTD----SKSGDYDT 515
                       +I+ ETG +     +DRE         Y  ++  TD      +G   T
Sbjct: 379 -----------LEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATG---T 424

Query: 516 TNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
             + + +LDVNDNAP  +      +   +       H     D
Sbjct: 425 GTLLLVLLDVNDNAPIPEP---RNMQFCQR--NPQPHIITILD 462

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  233 bits (596), Expect = 1e-69
 Identities = 87/485 (17%), Positives = 168/485 (34%), Gaps = 71/485 (14%)

Query: 64  EIKEDVPIGFTVGNVVSTDS-TGRAGG-GHVMYSLTSLSPTD-HSGAFDIDKSSGSLVVA 120
            + E    G +V  V +TD+          + Y++ S  P   H   F +++ +G + V 
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175

Query: 121 -RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNED 179
              LDRE+ P Y L V+A D        S+     I + D+NDNAP +  +     V E+
Sbjct: 176 TSGLDRESYPTYTLVVQAADLQG--EGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN 233

Query: 180 TLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSV----DHLTGTLTLLQPLDYET 235
             V + I     TD D  +    +            F V        G L   + LD+E 
Sbjct: 234 E-VNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEA 292

Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
              +IL V+V ++       + ++ T  V V D+N+ AP+F+       + V E   VG 
Sbjct: 293 KQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAE--RRVEVPEDFGVGQ 349

Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI----SEYDHQSKFR 351
            +T  TA + D+  + ++TY I   +      ++ + G +     +    +E+   S + 
Sbjct: 350 EITSYTAREPDTFMDQKITYRI-WRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYV 408

Query: 352 AVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVAR 411
           A+  I A+D G P  + +  + ++   V+ + P     +      +          +   
Sbjct: 409 AL--IIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQ--FCQRNPQPH---IITIL 461

Query: 412 SPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGV 471
            P    N                                             T  +  G 
Sbjct: 462 DPDLPPN-----------------------------------------TSPFTAELTHGA 480

Query: 472 ADD-MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY-DTTNVFITILDVNDNA 529
           + +   + +       + +      + +Y + + + D  + +    T + + + D     
Sbjct: 481 SVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLAD--NQNKDQVTTLDVHVCDCEGTV 538

Query: 530 PEFKS 534
                
Sbjct: 539 NNCMK 543

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  191 bits (487), Expect = 5e-54
 Identities = 89/412 (21%), Positives = 147/412 (35%), Gaps = 75/412 (18%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTG 223
           W   P++ P NE    G    N     ++     ++ Y +  Q    P    F ++  TG
Sbjct: 2   WVIPPISCPENEK---GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETG 58

Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV-SPTRG 282
            L + QPLD E +  +IL            E +   +   + V D NDN P F      G
Sbjct: 59  WLKVTQPLDREAIAKYILYSHAVSSN---GEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115

Query: 283 SLIYVSEQTRVGSHVTKMTAVDQDSG---DNGRVTYVISGGNEDAR----FHLDHDKGIL 335
           S   V+E    G+ V K++A D D      N  + Y I   + +      F ++ D G++
Sbjct: 116 S---VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVI 172

Query: 336 SLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANV 395
           S+     + +    +   L + A+D      S++    I  + ++ + P F   +Y   V
Sbjct: 173 SVLTSGLDRESYPTYT--LVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV 230

Query: 396 SEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLI 455
            E+      I  +                     D  P T   K V           Y +
Sbjct: 231 PENE-VNARIATLKVTDD----------------D-APNTPAWKAV-----------YTV 261

Query: 456 SDFSGYNLTYMIPAGVADDMFKI--DAET--GVVTLARSLDRETVDQYNLVVHVTD---- 507
                            D  F +  D  T  G++  A+ LD E   QY L V V +    
Sbjct: 262 V-------------NDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPF 308

Query: 508 SKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
             S    T  V + ++DVN+ AP F       + +PE+      + ++ A +
Sbjct: 309 EGSLVPSTATVTVDVVDVNE-APIFMPAE-RRVEVPEDFGVGQEITSYTARE 358

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  189 bits (483), Expect = 2e-53
 Identities = 59/346 (17%), Positives = 135/346 (39%), Gaps = 36/346 (10%)

Query: 62  NNEIKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGAFDIDKSS----GS 116
             ++ E+      +  +  TD           +Y++ +    D    F +        G 
Sbjct: 227 QGQVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVVN----DPDQQFVVVTDPTTNDGI 281

Query: 117 LVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVNDNAPRWGENPLTIP 175
           L  A+ LD E   +Y L VR  +          + A + +++VDVN+ AP +      + 
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVE 340

Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET 235
           V ED  VG  I ++TA + D   + ++ Y + R     N   ++  TG +     +D E 
Sbjct: 341 VPEDFGVGQEITSYTAREPDTFMDQKITYRIWR--DTANWLEINPETGAIFTRAEMDRED 398

Query: 236 L-----TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQ 290
                 ++++ ++  TD     S   + + T  +V+ D+NDNAP+         +   ++
Sbjct: 399 AEHVKNSTYVALIIATDDG---SPIATGTGTLLLVLLDVNDNAPIPEPRN----MQFCQR 451

Query: 291 TRVGSHVTKMTAVDQDSGDNG-RVTYVISGGN-EDARFHLDHDKGILSLARVISEYDHQS 348
                 +   T +D D   N    T  ++ G   +     +       + +   + +   
Sbjct: 452 NPQPHII---TILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLE-IG 507

Query: 349 KFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHAN 394
           +++  +++  +D+    + ++L +++       ++   +   +H +
Sbjct: 508 EYK--IHLKLADNQNKDQVTTLDVHVCD--CEGTVNNCMKAHHHHH 549

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  262 bits (672), Expect = 9e-81
 Identities = 123/519 (23%), Positives = 205/519 (39%), Gaps = 91/519 (17%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQ 122
              E  P    +  + S           V YS+T     +   G F I+  +G ++V R 
Sbjct: 16  SENERGPFPKRLVQIKSNK----DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 71

Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLV 182
           LDRE   +Y L   A+  +   +P    + I I ++D NDN P++ ++     V E    
Sbjct: 72  LDREEYDKYVLSSHAVSENG--SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQP 129

Query: 183 GSTIWNFTATDADD---GSNGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYET 235
           G+ +   +ATD DD     NG L Y +++Q PE    N F+++  TG +  +   LD E 
Sbjct: 130 GTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK 189

Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
              + L V+ TD        LS    A + + D NDNAP+F   T      V E   +G 
Sbjct: 190 FPEYTLTVQATDLE---GAGLSVEGKAIIQITDANDNAPIFDPKT--YTALVPE-NEIGF 243

Query: 296 HVTKMTAVDQDS-GDNGRVTYVISGGNEDARFHLDHDK----GILSLARVISEYDHQSKF 350
            V +++  D D  G            NE   F++  D     GIL+ A+ +  ++ + ++
Sbjct: 244 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLD-FELRKQY 302

Query: 351 RAVLNITASD---HGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIK 407
              L IT  +     +P  +S+  + +  E V+ + P F+      +VSED   G  II 
Sbjct: 303 V--LQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIIS 359

Query: 408 VVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMI 467
           +VA+ P                                 +Y     + +D + +      
Sbjct: 360 LVAQDPDKQQI-------------------------QKLSYF----IGNDPARW------ 384

Query: 468 PAGVADDMFKIDAETGVVTLARSLDRETV----DQYNLVVHVTDS----KSGDYDTTNVF 519
                     ++ + G+VT   +LDRE+     + Y +++ VTD      +G   T  + 
Sbjct: 385 --------LTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTG---TGTLI 433

Query: 520 ITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
           + +LDVNDN P        P       +         +D
Sbjct: 434 LHVLDVNDNGPVP-----SPRVFTMCDQNPEPQVLTISD 467

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  233 bits (597), Expect = 8e-70
 Identities = 93/481 (19%), Positives = 167/481 (34%), Gaps = 67/481 (13%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGGGH--VMYSLTSLSPTD-HSGAFDIDKSSGSLVVA 120
            ++E V  G  V  V +TD        +  + YS+    P +     F I++ +G + + 
Sbjct: 122 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI 181

Query: 121 RQ-LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNED 179
              LDRE  PEY L V+A D        S      I+I D NDNAP +     T  V E+
Sbjct: 182 GTGLDREKFPEYTLTVQATDLEG--AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN 239

Query: 180 TLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHF----SVDHLTGTLTLLQPLDYET 235
             +G  +   + TD D       +     +  EG  F      +   G LT  + LD+E 
Sbjct: 240 E-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFEL 298

Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
              ++L + V +         +++ T  V V+D+N+  P FV     S + VSE    G 
Sbjct: 299 RKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAV--SRVDVSEDLSRGE 355

Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI---SEYDHQSKFRA 352
            +  + A D D     +++Y I G +      ++ D GI++    +   SEY   + +  
Sbjct: 356 KIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTV 414

Query: 353 VLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARS 412
           +  +  +D G+   + +  + +    V+ + P      +         P   ++ +    
Sbjct: 415 I--MLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN---PEPQVLTISDA- 468

Query: 413 PSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVA 472
                            D                            + Y     +  G  
Sbjct: 469 -----------------D-------------------------IPPNTYPYKVSLSHGSD 486

Query: 473 DDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEF 532
                     G   L     +     Y++ V ++D+   +   T V  T+      A + 
Sbjct: 487 LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA-QNNPQLTVVNATVCSCEGKAIKC 545

Query: 533 K 533
           +
Sbjct: 546 Q 546

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  200 bits (511), Expect = 2e-57
 Identities = 81/418 (19%), Positives = 146/418 (34%), Gaps = 81/418 (19%)

Query: 164 APRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGL----VRQYPEGNHFSVD 219
              W   P+ +  NE       +       ++     ++ Y +        P+G  F ++
Sbjct: 5   HHDWVIPPIKVSENERGPFPKRL---VQIKSNKDRFNKVYYSITGQGADNPPQG-VFRIE 60

Query: 220 HLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV-S 278
             TG + + +PLD E    ++L      +       +   +   + V D NDN P F   
Sbjct: 61  WETGWMLVTRPLDREEYDKYVLSSHAVSEN---GSPVEEPMEITINVIDQNDNRPKFTQD 117

Query: 279 PTRGSLIYVSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDAR----FHLDHD 331
             RGS   V E  + G+ V  ++A D+D      NG ++Y I   + +      F ++ +
Sbjct: 118 VFRGS---VREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRE 174

Query: 332 KGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSS--LVINILSETVSTSLPTFLSP 389
            G++SL     + +   ++   L + A+D      S     +I I     + + P F   
Sbjct: 175 TGVISLIGTGLDREKFPEYT--LTVQATDLEGAGLSVEGKAIIQITD--ANDNAPIFDPK 230

Query: 390 SYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYV 449
           +Y A V E+   G  + ++        G             A    Y I+          
Sbjct: 231 TYTALVPENE-IGFEVQRLSVTDLDMPGT-----------PAWQAVYKIR---------- 268

Query: 450 YHMYLISDFSGYNLTYMIPAGVADDMFKI----DAETGVVTLARSLDRETVDQYNLVVHV 505
                                     F I    ++  G++T A+ LD E   QY L + V
Sbjct: 269 --------------------VNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITV 308

Query: 506 TD----SKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
            +    S      T  V +T+ DVN+  P F       + + E+      + + +A D
Sbjct: 309 ENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAV-SRVDVSEDLSRGEKIISLVAQD 364

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  180 bits (460), Expect = 3e-50
 Identities = 64/323 (19%), Positives = 114/323 (35%), Gaps = 30/323 (9%)

Query: 62  NNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKS----SGSL 117
              + E+  IGF V  +  TD                +   +  G F+I        G L
Sbjct: 233 TALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV---NEGGFFNITTDPESNQGIL 288

Query: 118 VVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVNDNAPRWGENPLTIPV 176
             A+ LD E   +Y L++   +    S P  ++ A + + + DVN+  P +      + V
Sbjct: 289 TTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDV 347

Query: 177 NEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYET- 235
           +ED   G  I +  A D D     +L Y +          +V+   G +T    LD E+ 
Sbjct: 348 SEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN--DPARWLTVNKDNGIVTGNGNLDRESE 405

Query: 236 ---LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTR 292
                ++ +++ VTD         + + T  + V D+NDN PV             +   
Sbjct: 406 YVKNNTYTVIMLVTDDG---VSVGTGTGTLILHVLDVNDNGPVPSPR---VFTMCDQ--- 456

Query: 293 VGSHVTKMTAVDQDSGDNG-RVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFR 351
                  +T  D D   N       +S G++         KG   L     +   +  + 
Sbjct: 457 -NPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLK-KGDYS 514

Query: 352 AVLNITASDHGIPPKSSSLVINI 374
             + +  SD    P+ + +   +
Sbjct: 515 --IYVLLSDAQNNPQLTVVNATV 535

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  269 bits (690), Expect = 1e-80
 Identities = 124/517 (23%), Positives = 207/517 (40%), Gaps = 93/517 (17%)

Query: 67  EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQLDR 125
           E  P    +  + S           V YS+T     +   G F I+  +G ++V R LDR
Sbjct: 168 ERGPFPKRLVQIKSNK----DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDR 223

Query: 126 ETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGST 185
           E   +Y L   A+  +   +P    + I I ++D NDN P++ ++     V E    G+ 
Sbjct: 224 EEYDKYVLSSHAVSENG--SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQ 281

Query: 186 IWNFTATDADD---GSNGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYETLTS 238
           +   +ATD DD     NG L Y +++Q PE    N F+++  TG +  +   LD E    
Sbjct: 282 VMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE 341

Query: 239 FILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVT 298
           + L V+ TD        LS    A + + D NDNAP+F   T      V E   +G  V 
Sbjct: 342 YTLTVQATDLE---GAGLSVEGKAIIQITDANDNAPIFDPKT--YTALVPE-NEIGFEVQ 395

Query: 299 KMTAVDQDSGDNG--RVTYVISGGNEDARFHLDHDK----GILSLARVISEYDHQSKFRA 352
           +++  D D       +  Y I   NE   F++  D     GIL+ A+ +  ++ + ++  
Sbjct: 396 RLSVTDLDMPGTPAWQAVYKIR-VNEGGFFNITTDPESNQGILTTAKGLD-FELRKQY-- 451

Query: 353 VLNITASD---HGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVV 409
           VL IT  +     +P  +S+  + +  E V+ + P F+      +VSED   G  II +V
Sbjct: 452 VLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLV 510

Query: 410 ARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPA 469
           A+ P                                    Y   + +D + +        
Sbjct: 511 AQDPDKQQI---------------------------QKLSYF--IGNDPARW-------- 533

Query: 470 GVADDMFKIDAETGVVTLARSLDRETV----DQYNLVVHVTDS----KSGDYDTTNVFIT 521
                   ++ + G+VT   +LDRE+     + Y +++ VTD      +G   T  + + 
Sbjct: 534 ------LTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTG---TGTLILH 584

Query: 522 ILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATD 558
           +LDVNDN P       + +                +D
Sbjct: 585 VLDVNDNGPVPSPRV-FTMCDQNPE----PQVLTISD 616

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  232 bits (594), Expect = 4e-67
 Identities = 91/523 (17%), Positives = 170/523 (32%), Gaps = 89/523 (17%)

Query: 67  EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPT-DHSG----AFDIDKSSGSL-VVA 120
            ++  G  +G V  +D T      H +Y +          G       +     +   ++
Sbjct: 49  RELERGRKLGKVNFSDCTT---RKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTIS 105

Query: 121 RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPR-----WGENPLTIP 175
               R       + V +    +     S +  + +          +     W   P+ + 
Sbjct: 106 TWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVS 165

Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQ---YPEGNHFSVDHLTGTLTLLQPLD 232
            NE       +       ++     ++ Y +  Q    P    F ++  TG + + +PLD
Sbjct: 166 ENERGPFPKRL---VQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLD 222

Query: 233 YETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV-SPTRGSLIYVSEQT 291
            E    ++L      +       +   +   + V D NDN P F     RGS   V E  
Sbjct: 223 REEYDKYVLSSHAVSEN---GSPVEEPMEITINVIDQNDNRPKFTQDVFRGS---VREGV 276

Query: 292 RVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDAR----FHLDHDKGILSLARVISEY 344
           + G+ V  ++A D+D      NG ++Y I   + +      F ++ + G++SL     + 
Sbjct: 277 QPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 336

Query: 345 DHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTY 404
           +   ++   L + A+D      S      I     + + P F   +Y A V E+   G  
Sbjct: 337 EKFPEYT--LTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFE 393

Query: 405 IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLT 464
           + ++        G             A    Y I+                         
Sbjct: 394 VQRLSVTDLDMPGT-----------PAWQAVYKIR------------------------- 417

Query: 465 YMIPAGVADDMFKIDAE----TGVVTLARSLDRETVDQYNLVVHVTD----SKSGDYDTT 516
                      F I  +     G++T A+ LD E   QY L + V +    S      T 
Sbjct: 418 -----VNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTA 472

Query: 517 NVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
            V +T+ DVN+  P F       + + E+      + + +A D
Sbjct: 473 TVTVTVEDVNEA-PFFVPAV-SRVDVSEDLSRGEKIISLVAQD 513

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  229 bits (585), Expect = 9e-66
 Identities = 95/480 (19%), Positives = 168/480 (35%), Gaps = 67/480 (13%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTD-HSGAFDIDKSSGSLVVA 120
            ++E V  G  V  V +TD         G + YS+    P +     F I++ +G + + 
Sbjct: 271 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI 330

Query: 121 RQ-LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNED 179
              LDRE  PEY L V+A D        S      I+I D NDNAP +     T  V E+
Sbjct: 331 GTGLDREKFPEYTLTVQATD--LEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN 388

Query: 180 TLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSV----DHLTGTLTLLQPLDYET 235
             +G  +   + TD D       +     +  EG  F++    +   G LT  + LD+E 
Sbjct: 389 E-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFEL 447

Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS 295
              ++L + V +         +++ T  V V+D+N+  P FV     S + VSE    G 
Sbjct: 448 RKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAV--SRVDVSEDLSRGE 504

Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVI---SEYDHQSKFRA 352
            +  + A D D     +++Y I G +      ++ D GI++    +   SEY   + +  
Sbjct: 505 KIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTV 563

Query: 353 VLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARS 412
           +  +  +D G+   + +  + +    V+ + P      +         P   ++ +    
Sbjct: 564 I--MLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN---PEPQVLTISDA- 617

Query: 413 PSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVA 472
                            D  P                           Y     +  G  
Sbjct: 618 -----------------DIPPN-------------------------TYPYKVSLSHGSD 635

Query: 473 DDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEF 532
                     G   L     +     Y++ V ++D+   +   T V  T+      A + 
Sbjct: 636 LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA-QNNPQLTVVNATVCSCEGKAIKC 694

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  206 bits (526), Expect = 9e-58
 Identities = 86/427 (20%), Positives = 142/427 (33%), Gaps = 69/427 (16%)

Query: 153 IKIEIVDVNDNAPRWGENPLTIPVNEDTL-VGSTIWNFTATDADDGSNGELRYGLVRQYP 211
           +     DV+   P +        VN   L  G  +     +D     +G    G      
Sbjct: 23  VPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVG------ 76

Query: 212 EGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQ-----------AANISERLSTSL 260
             + F V    GT+ + + +     T F +                    + S   + S 
Sbjct: 77  -DSRFRVLP-DGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSR 134

Query: 261 TARVVVKDLNDNAPVFVSPTRG---SLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVI 317
           ++++ V    +         R      I VSE  R G    ++  +  +     +V Y I
Sbjct: 135 SSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER-GPFPKRLVQIKSNKDRFNKVYYSI 193

Query: 318 SGGNEDAR----FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVIN 373
           +G   D      F ++ + G + + R + + +   K+   L+  A      P    + I 
Sbjct: 194 TGQGADNPPQGVFRIEWETGWMLVTRPL-DREEYDKYV--LSSHAVSENGSPVEEPMEIT 250

Query: 374 ILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIP 433
           I     + + P F    +  +V E   PGT ++ V A                  ED   
Sbjct: 251 INVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSA----------------TDEDDNI 294

Query: 434 GTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARS-LD 492
            +    +                    Y++    P     ++F I+ ETGV++L  + LD
Sbjct: 295 DSLNGVLS-------------------YSILKQDPEEPIPNLFTINRETGVISLIGTGLD 335

Query: 493 RETVDQYNLVVHVTDSKS-GDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANV 551
           RE   +Y L V  TD +  G        I I D NDNAP F   + Y   +PEN     V
Sbjct: 336 REKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKT-YTALVPENEIGFEV 394

Query: 552 HTFIATD 558
                TD
Sbjct: 395 QRLSVTD 401

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  181 bits (460), Expect = 7e-49
 Identities = 66/357 (18%), Positives = 119/357 (33%), Gaps = 34/357 (9%)

Query: 55  KFKKYLSNNEIKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGAFDIDKS 113
            F        + E+  IGF V  +  TD           +Y +      +  G F+I   
Sbjct: 375 IFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV----NEGGFFNITTD 429

Query: 114 S----GSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVNDNAPRWG 168
                G L  A+ LD E   +Y L++   +    S P  ++ A + + + DVN+  P + 
Sbjct: 430 PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFV 488

Query: 169 ENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLL 228
                + V+ED   G  I +  A D D     +L Y +          +V+   G +T  
Sbjct: 489 PAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN--DPARWLTVNKDNGIVTGN 546

Query: 229 QPLDYET----LTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSL 284
             LD E+      ++ +++ VTD         + + T  + V D+NDN PV         
Sbjct: 547 GNLDRESEYVKNNTYTVIMLVTDDG---VSVGTGTGTLILHVLDVNDNGPVPSPRVF--T 601

Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNG-RVTYVISGGNEDARFHLDHDKGILSLARVISE 343
           +              +T  D D   N       +S G++         KG   L     +
Sbjct: 602 MCDQNPE-----PQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQ 656

Query: 344 YDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAI 400
              +  +   + +  SD    P+ + +   +   +                     +
Sbjct: 657 LK-KGDYS--IYVLLSDAQNNPQLTVVNATV--CSCEGKAIKCQEKLVGGFDLPIIL 708

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  125 bits (316), Expect = 2e-30
 Identities = 49/316 (15%), Positives = 92/316 (29%), Gaps = 56/316 (17%)

Query: 256 LSTSLTARVVVKDLNDNAPVFVSPT-RGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVT 314
           L        +  D++   P F S     S+     +   G  + K+   D  +  +G   
Sbjct: 17  LCLLQVVPSINADVSGCKPGFSSAEYIFSV--NRRELERGRKLGKVNFSDCTTRKHGLYD 74

Query: 315 Y------VISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSS 368
                  V+  G    + H+   K              +      +       G    S 
Sbjct: 75  VGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSR 134

Query: 369 SLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVS 428
           S  + +L+   + +        +     +                              +
Sbjct: 135 SSKLPVLTFPETHTGLKRKKRDWVIPPIK---------------------------VSEN 167

Query: 429 EDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVAD----DMFKIDAETGV 484
           E       ++++ +                    + Y I    AD     +F+I+ ETG 
Sbjct: 168 ERGPFPKRLVQIKSNKDR-------------FNKVYYSITGQGADNPPQGVFRIEWETGW 214

Query: 485 VTLARSLDRETVDQYNLVVHVTDSKSGDY-DTTNVFITILDVNDNAPEFKSGSCYPITIP 543
           + + R LDRE  D+Y L  H          +   + I ++D NDN P+F     +  ++ 
Sbjct: 215 MLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDV-FRGSVR 273

Query: 544 ENSEA-ANVHTFIATD 558
           E  +    V    ATD
Sbjct: 274 EGVQPGTQVMAVSATD 289

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  216 bits (552), Expect = 7e-66
 Identities = 87/314 (27%), Positives = 148/314 (47%), Gaps = 23/314 (7%)

Query: 65  IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
           ++E       +   + TD     G   + Y L+          F I+  +G +   ++LD
Sbjct: 10  LEEFSGPEPILVGRLHTDLD--PGSKKIKYILSG---DGAGTIFQINDITGDIHAIKRLD 64

Query: 125 RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGS 184
           RE   EY L  +A+D  T+  P        I++ D+NDNAP +   P    V E +++G+
Sbjct: 65  REEKAEYTLTAQAVDFETN-KPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGT 123

Query: 185 TIWNFTATDADD---GSNGELRYGLVRQYPEGNHFSVDHLTGTL-TLLQPLDYETLTSFI 240
           ++ N TATDADD   G++ +L Y ++   P   +FS++  T  + T L  +D E    ++
Sbjct: 124 SVTNVTATDADDPVYGNSAKLVYSILEGQP---YFSIEPETAIIKTALPNMDREAKEEYL 180

Query: 241 LVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKM 300
           +V++  D     S  LS + T  V + D+NDN P F          V E   +G+ + ++
Sbjct: 181 VVIQAKDM-GGHSGGLSGTTTLTVTLTDVNDNPPKFAQSL--YHFSVPEDVVLGTAIGRV 237

Query: 301 TAVDQDSGDNGRVTYVISGGNEDARFHL----DHDKGILSLARVISEYDHQSKFRAVLNI 356
            A DQD G+N + +Y I  G+  A F +        G++ L +     D ++K    L +
Sbjct: 238 KANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRK---PLDFETKKSYTLKV 294

Query: 357 TASDHGIPPKSSSL 370
            A++  I P+ SS 
Sbjct: 295 EAANIHIDPRFSSR 308

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  158 bits (402), Expect = 4e-44
 Identities = 84/363 (23%), Positives = 135/363 (37%), Gaps = 82/363 (22%)

Query: 164 APRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTG 223
           +  W  N + + + E +     +     TD D G + +++Y L      G  F ++ +TG
Sbjct: 1   SWVW--NQMFV-LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGD-GAGTIFQINDITG 55

Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF-VSPTRG 282
            +  ++ LD E    + L  +  D   N  + L       + V+D+NDNAP F   P   
Sbjct: 56  DIHAIKRLDREEKAEYTLTAQAVDFETN--KPLEPPSEFIIKVQDINDNAPEFLNGPYHA 113

Query: 283 SLIYVSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARFHLDHDKGILSLAR 339
           +   V E + +G+ VT +TA D D    G++ ++ Y I  G     F ++ +  I+  A 
Sbjct: 114 T---VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPY--FSIEPETAIIKTAL 168

Query: 340 ------VISEYDHQSKFRAVLNITASDHG--IPPKSSSLVINILSETVSTSLPTFLSPSY 391
                    EY         + I A D G      S +  + +    V+ + P F    Y
Sbjct: 169 PNMDREAKEEYL--------VVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLY 220

Query: 392 HANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYH 451
           H +V ED + GT I +V A                   D                     
Sbjct: 221 HFSVPEDVVLGTAIGRVKANDQ----------------D--------------------- 243

Query: 452 MYLISDFSGYN--LTYMIPAGVADDMFKI----DAETGVVTLARSLDRETVDQYNLVVHV 505
                   G N   +Y I  G    +F+I     A+ GV+ L + LD ET   Y L V  
Sbjct: 244 -------IGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEA 296

Query: 506 TDS 508
            + 
Sbjct: 297 ANI 299

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  144 bits (365), Expect = 6e-39
 Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 11/212 (5%)

Query: 62  NNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDHSGAFDIDKSSGSL-V 118
           +  + E   +G +V NV +TD+     G    ++YS+    P      F I+  +  +  
Sbjct: 112 HATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPY-----FSIEPETAIIKT 166

Query: 119 VARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNE 178
               +DRE   EY + ++A D    S   S    + + + DVNDN P++ ++     V E
Sbjct: 167 ALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPE 226

Query: 179 DTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGN---HFSVDHLTGTLTLLQPLDYET 235
           D ++G+ I    A D D G N +  Y ++                  G + L +PLD+ET
Sbjct: 227 DVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFET 286

Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVK 267
             S+ L V+  +   +              VK
Sbjct: 287 KKSYTLKVEAANIHIDPRFSSRGPFKDTATVK 318

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  137 bits (348), Expect = 2e-36
 Identities = 60/294 (20%), Positives = 107/294 (36%), Gaps = 61/294 (20%)

Query: 273 APVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDK 332
           + V+ +        + E +     +      D D G + ++ Y++SG      F ++   
Sbjct: 1   SWVW-NQM----FVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDIT 54

Query: 333 GILSLARVISEYDHQSKFRAVLNITASDH-GIPPKSSSLVINILSETVSTSLPTFLSPSY 391
           G +   + + + + ++++   L   A D     P        I  + ++ + P FL+  Y
Sbjct: 55  GDIHAIKRL-DREEKAEYT--LTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPY 111

Query: 392 HANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYH 451
           HA V E +I GT +  V A                   D                     
Sbjct: 112 HATVPEMSILGTSVTNVTATDA----------------D--------------------- 134

Query: 452 MYLISDFSGYN--LTYMIPAGVADDMFKIDAETGVV-TLARSLDRETVDQYNLVVHVTDS 508
                   G +  L Y I  G     F I+ ET ++ T   ++DRE  ++Y +V+   D 
Sbjct: 135 ----DPVYGNSAKLVYSILEG--QPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDM 188

Query: 509 KSGDY---DTTNVFITILDVNDNAPEFKSGSCYPITIPENSE-AANVHTFIATD 558
                    TT + +T+ DVNDN P+F     Y  ++PE+      +    A D
Sbjct: 189 GGHSGGLSGTTTLTVTLTDVNDNPPKFAQSL-YHFSVPEDVVLGTAIGRVKAND 241

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  208 bits (531), Expect = 1e-61
 Identities = 87/455 (19%), Positives = 162/455 (35%), Gaps = 81/455 (17%)

Query: 90  GHVMYSLTSLSPTDH-----SGAFDIDKSSGSLVVARQLDRETCPE---YKLEVRALDTS 141
           G  ++ L   +  +         +   +++G++ V ++ D E           V   +  
Sbjct: 25  GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 84

Query: 142 TSSNPQ-SSAVAIKIEIVDVNDNAPRWGENPLT--IPVNEDTLVGSTIWNFTATDADDGS 198
            ++  + +    + I + DVND  P +   PL     V  +    + ++   A D D   
Sbjct: 85  HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 144

Query: 199 NGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLST 258
           N    Y +VR    G  F VD  +G +       ++    ++L VK  DQ   + +R   
Sbjct: 145 NIH--YFIVRD-RTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQ 201

Query: 259 SLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTY-VI 317
           S     +       AP F  P+      + E  +  S +  + A       +  + Y + 
Sbjct: 202 STPEERLSIVGGKRAPQFYMPS--YEAEIPENQKKDSDIISIKAKS---FADREIRYTLK 256

Query: 318 SGGNEDARFHLDHDKGILSLARVISEYDHQSKFRA-VLNITASDHGIPPKSSSLVINILS 376
           + G     F++    GI+ LA+ + +++   +     L +TA++      S+S+ + I  
Sbjct: 257 AQGQGAGTFNIGPTSGIVKLAKEL-DFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRV 314

Query: 377 ETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTY 436
             V+ + P F  P Y                               +   V ED   GT 
Sbjct: 315 TDVNDNAPKFELPDY-------------------------------QAHNVDEDIPLGTS 343

Query: 437 IIKVVARSPSTYVYHMYLISDFSGYN--LTYMIPAGVADDMFKIDAETGVVTLARSLDRE 494
           I++V A              D SG N  + Y++    +DD F +D   G++   + LD +
Sbjct: 344 ILRVKAMDS-----------D-SGSNAEIEYLV----SDDHFAVD-SNGIIVNNKQLDAD 386

Query: 495 TV-DQYNLVVHVTDS----KSGDYDTTNVFITILD 524
                Y  +V   D     KSG      V +   +
Sbjct: 387 NNNAYYEFIVTAKDKGEPPKSG---VATVRVYTKN 418

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  207 bits (528), Expect = 3e-61
 Identities = 82/401 (20%), Positives = 137/401 (34%), Gaps = 71/401 (17%)

Query: 176 VNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYP-------EGNHFSVDHLTGTLTLL 228
           V               T+AD  + G+  + L ++         + N +      G + + 
Sbjct: 4   VTRAVRPTKR---IEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60

Query: 229 QPLDYETL---TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLI 285
           +  DYE L    +    V +T+   N   + + +    ++VKD+ND  P F++       
Sbjct: 61  KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120

Query: 286 YVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYD 345
            V       + V  + A D D+  N  + Y I       RF +D   G++          
Sbjct: 121 VVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTD---L 175

Query: 346 HQSKFRAVLNITASDHGIPP---KSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPG 402
            Q     VL + A D        +  S     LS       P F  PSY A + E+    
Sbjct: 176 FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKD 235

Query: 403 TYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN 462
           + II + A+S                                                  
Sbjct: 236 SDIISIKAKSF-------------------------------------------ADRE-- 250

Query: 463 LTYMIPAGVADDM-FKIDAETGVVTLARSLDRETVDQ---YNLVVHVTDSKSGDYDTTNV 518
           + Y + A       F I   +G+V LA+ LD E + Q   Y+L+V  T+   G   + ++
Sbjct: 251 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDL 310

Query: 519 FITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
            I + DVNDNAP+F+        + E+     ++    A D
Sbjct: 311 TIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMD 351

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  204 bits (520), Expect = 4e-60
 Identities = 73/316 (23%), Positives = 131/316 (41%), Gaps = 27/316 (8%)

Query: 65  IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
           ++ + P    V  + + D        ++ Y +         G F++D+ SG +       
Sbjct: 122 VQLNAPPNTPVFTLQARD---PDTDHNIHYFIVR---DRTGGRFEVDERSGVVRTRGTDL 175

Query: 125 RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEI-VDVNDNAPRWGENPLTIPVNEDTLVG 183
            +   EY L V+A D +   + +      +  + +     AP++        + E+    
Sbjct: 176 FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKD 235

Query: 184 STIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTS---FI 240
           S I +  A       + E+RY L  Q      F++   +G + L + LD+E L     + 
Sbjct: 236 SDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYS 292

Query: 241 LVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKM 300
           L+V  T+     S   STS+   + V D+NDNAP F  P       V E   +G+ + ++
Sbjct: 293 LIVTATED----SGGFSTSVDLTIRVTDVNDNAPKFELPDY-QAHNVDEDIPLGTSILRV 347

Query: 301 TAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDH-QSKFRAVLNITAS 359
            A+D DSG N  + Y++S  +    F +D + GI+   + +   D   +       +TA 
Sbjct: 348 KAMDSDSGSNAEIEYLVSDDH----FAVDSN-GIIVNNKQL---DADNNNAYYEFIVTAK 399

Query: 360 DHGIPPKSSSLVINIL 375
           D G PPKS    + + 
Sbjct: 400 DKGEPPKSGVATVRVY 415

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  140 bits (356), Expect = 7e-37
 Identities = 47/294 (15%), Positives = 91/294 (30%), Gaps = 68/294 (23%)

Query: 287 VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDK--------GILSLA 338
           V+   R    +      + D    G+  + +    +   F +  D         G + + 
Sbjct: 4   VTRAVRPTKRIE---FTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60

Query: 339 RVI---SEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSP--SYHA 393
           +          ++    V+      +     + +  + IL + V+   P F++      A
Sbjct: 61  KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120

Query: 394 NVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMY 453
            V  +A P T +  + AR P                                        
Sbjct: 121 VVQLNAPPNTPVFTLQARDP---------------------------------------- 140

Query: 454 LISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTD-----S 508
              D + +N+ Y I        F++D  +GVV    +   +   +Y L V   D      
Sbjct: 141 ---D-TDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVD 196

Query: 509 KSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATDFGN 561
                 T    ++I+     AP+F   S Y   IPEN +  +++ +  A  F +
Sbjct: 197 DRRFQSTPEERLSIVG-GKRAPQFYMPS-YEAEIPENQKKDSDIISIKAKSFAD 248

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  139 bits (352), Expect = 3e-36
 Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 23/211 (10%)

Query: 63  NEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQ 122
            EI E+      + ++ +     R     +               F+I  +SG + +A++
Sbjct: 226 AEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGT------FNIGPTSGIVKLAKE 279

Query: 123 LDRETCPE---YKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTI-PVNE 178
           LD E   +   Y L V A +    S   S++V + I + DVNDNAP++         V+E
Sbjct: 280 LDFEDLRQPHVYSLIVTATE---DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDE 336

Query: 179 DTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTS 238
           D  +G++I    A D+D GSN E+ Y +       +HF+VD   G +   + LD +   +
Sbjct: 337 DIPLGTSILRVKAMDSDSGSNAEIEYLVS-----DDHFAVDS-NGIIVNNKQLDADNNNA 390

Query: 239 -FILVVKVTDQAANISERLSTSLTARVVVKD 268
            +  +V   D+        S   T RV  K+
Sbjct: 391 YYEFIVTAKDKG---EPPKSGVATVRVYTKN 418

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  199 bits (508), Expect = 2e-59
 Identities = 72/364 (19%), Positives = 124/364 (34%), Gaps = 81/364 (22%)

Query: 190 TATDADDGSNGELRYGLVRQYP-------EGNHFSVDHLTGTLTLLQPLDYETLTS---- 238
             T+AD  + G+  + L ++         + N +      G + + +  DYE L      
Sbjct: 10  EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTI 69

Query: 239 --FILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSH 296
             ++++  +   A     + + +    ++VKD+ND  P F++        V       + 
Sbjct: 70  DFWVIITNMGHNAGI---KYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP 126

Query: 297 VTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNI 356
           V  + A D D+  N  + Y I       RF +D   G++        +    ++   L +
Sbjct: 127 VFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTD-LFQLDMEYV--LYV 181

Query: 357 TASDHGIPPKSSSLVINILSETVSTSL--------PTFLSPSYHANVSEDAIPGTYIIKV 408
            A D                 T    L        P F  PSY A + E+    + II +
Sbjct: 182 KAEDQNGKVDDRR-----FQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISI 236

Query: 409 VARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIP 468
            A+S                       Y +K                             
Sbjct: 237 KAKSF----------------ADREIRYTLK----------------------------A 252

Query: 469 AGVADDMFKIDAETGVVTLARSLDRETVDQ---YNLVVHVTDSKSGDYDTTNVFITILDV 525
            G     F I   +G+V LA+ LD E + Q   Y+L+V  T+   G   + ++ I + DV
Sbjct: 253 QGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDV 312

Query: 526 NDNA 529
           NDNA
Sbjct: 313 NDNA 316

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  173 bits (440), Expect = 1e-49
 Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 27/300 (9%)

Query: 90  GHVMYSLTSLSPT-----DHSGAFDIDKSSGSLVVARQLDRETCPEYK------LEVRAL 138
           G  ++ L   +            +   +++G++ V ++ D E     K      +     
Sbjct: 20  GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 79

Query: 139 DTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLT--IPVNEDTLVGSTIWNFTATDADD 196
             +      +    + I + DVND  P +   PL     V  +    + ++   A D D 
Sbjct: 80  HNAG--IKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDT 137

Query: 197 GSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISER- 255
             N  + Y +VR    G  F VD  +G +       ++    ++L VK  DQ   + +R 
Sbjct: 138 DHN--IHYFIVRD-RTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 194

Query: 256 LSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTY 315
             ++   R+ +      AP F  P+      + E  +  S +  + A       +  + Y
Sbjct: 195 FQSTPEERLSIVG-GKRAPQFYMPS--YEAEIPENQKKDSDIISIKAKS---FADREIRY 248

Query: 316 VIS-GGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
            +   G     F++    GI+ LA+ +   D +      L +TA++      S+S+ + I
Sbjct: 249 TLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTI 307

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  149 bits (377), Expect = 1e-40
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 19/222 (8%)

Query: 57  KKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGS 116
           +       ++ + P    V  + + D        ++ Y +           F++D+ SG 
Sbjct: 109 RPLPMQAVVQLNAPPNTPVFTLQARD---PDTDHNIHYFIVRDRTGGR---FEVDERSGV 162

Query: 117 LVVARQLDRETCPEYKLEVRALD--TSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTI 174
           +        +   EY L V+A D           S    ++ IV     AP++       
Sbjct: 163 VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEA 221

Query: 175 PVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYE 234
            + E+    S I +  A       + E+RY L  Q      F++   +G + L + LD+E
Sbjct: 222 EIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFE 278

Query: 235 TLTS---FILVVKVTDQAANISERLSTSLTARVVVKDLNDNA 273
            L     + L+V  T+ +       STS+   + V D+NDNA
Sbjct: 279 DLRQPHVYSLIVTATEDSG----GFSTSVDLTIRVTDVNDNA 316

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  134 bits (338), Expect = 3e-35
 Identities = 43/280 (15%), Positives = 86/280 (30%), Gaps = 61/280 (21%)

Query: 296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDK--------GILSLARVI---SEY 344
              ++   + D    G+  + +    +   F +  D         G + + +        
Sbjct: 5   PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELG 64

Query: 345 DHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTY 404
             ++    V+      +     + +  + IL + V+   P F++                
Sbjct: 65  PEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAV-------- 116

Query: 405 IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLT 464
                                 V  +A P T +  + AR P           D + +N+ 
Sbjct: 117 ----------------------VQLNAPPNTPVFTLQARDP-----------D-TDHNIH 142

Query: 465 YMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS-----KSGDYDTTNVF 519
           Y I        F++D  +GVV    +   +   +Y L V   D            T    
Sbjct: 143 YFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEER 202

Query: 520 ITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
           ++I+     AP+F   S Y   IPEN +  +++ +  A  
Sbjct: 203 LSIVG-GKRAPQFYMPS-YEAEIPENQKKDSDIISIKAKS 240

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  177 bits (451), Expect = 1e-52
 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 17/214 (7%)

Query: 59  YLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLV 118
           + +   I ED P+G +V  +++ D         +++ ++    +     F ++  +G + 
Sbjct: 13  FDTYLLISEDTPVGSSVTQLLARD----MDNDPLVFGVSGEEASRF---FAVEPDTGVVW 65

Query: 119 VARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNE 178
           + + LDRET  E+ +E    D     +       + I++ DVNDNAP +   P ++ + E
Sbjct: 66  LRQPLDRETKSEFTVEFSVSD-----HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE 120

Query: 179 DTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTS 238
           +T VG+ I+   ATD D G+ G + Y      P    F++D   G +T++Q LDYE   +
Sbjct: 121 NTPVGTPIFIVNATDPDLGAGGSVLYSFQ---PPSPFFAIDSARGIVTVIQELDYEVTQA 177

Query: 239 FILVVKVTDQAANISERLSTSLTARVVVKDLNDN 272
           + L V  TDQ    +  LST     +++ D+ D 
Sbjct: 178 YQLTVNATDQDK--TRPLSTLANLAIIITDMQDM 209

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  149 bits (378), Expect = 5e-42
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 24/221 (10%)

Query: 161 NDNAPRWGENPLT--IPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSV 218
            +  P +  +     + ++EDT VGS++    A D D   N  L +G+  +      F+V
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASR-FFAV 57

Query: 219 DHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVS 278
           +  TG + L QPLD ET + F +   V+D           +    + V D+NDNAP F  
Sbjct: 58  EPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ------GVITRKVNIQVGDVNDNAPTF-- 109

Query: 279 PTRGSL-IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSL 337
                  + + E T VG+ +  + A D D G  G V Y     +    F +D  +GI+++
Sbjct: 110 -HNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF--FAIDSARGIVTV 166

Query: 338 ARVISEYDHQSKFRAVLNITASDHGIPPKSSS---LVINIL 375
            + +   D++      L + A+D       S+   L I I 
Sbjct: 167 IQEL---DYEVTQAYQLTVNATDQDKTRPLSTLANLAIIIT 204

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  146 bits (371), Expect = 4e-41
 Identities = 60/265 (22%), Positives = 96/265 (36%), Gaps = 63/265 (23%)

Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLD 329
            +  P F +    + + +SE T VGS VT++ A D D   N  + + +SG      F ++
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58

Query: 330 HDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSP 389
            D G++ L + +   D ++K    +  + SDH     +  + I +    V+ + PTF + 
Sbjct: 59  PDTGVVWLRQPL---DRETKSEFTVEFSVSDHQGVI-TRKVNIQVGD--VNDNAPTFHNQ 112

Query: 390 SYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYV 449
            Y   + E+   GT I  V A  P                D                   
Sbjct: 113 PYSVRIPENTPVGTPIFIVNATDP----------------D------------------- 137

Query: 450 YHMYLISDFSGYN--LTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTD 507
                     G    + Y          F ID+  G+VT+ + LD E    Y L V+ TD
Sbjct: 138 ---------LGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 186

Query: 508 SKSGD----YDTTNVFITILDVNDN 528
                        N+ I I D+ D 
Sbjct: 187 --QDKTRPLSTLANLAIIITDMQDM 209

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  112 bits (283), Expect = 9e-29
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 17/140 (12%)

Query: 420 VYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKID 479
            +    L+SED   G+ + +++AR             D     L + +    A   F ++
Sbjct: 12  FFDTYLLISEDTPVGSSVTQLLAR-------------DMDNDPLVFGVSGEEASRFFAVE 58

Query: 480 AETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYP 539
            +TGVV L + LDRET  ++ +   V+D       T  V I + DVNDNAP F +   Y 
Sbjct: 59  PDTGVVWLRQPLDRETKSEFTVEFSVSD--HQGVITRKVNIQVGDVNDNAPTFHNQP-YS 115

Query: 540 ITIPENSEA-ANVHTFIATD 558
           + IPEN+     +    ATD
Sbjct: 116 VRIPENTPVGTPIFIVNATD 135

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  161 bits (409), Expect = 2e-46
 Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 65  IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
           I+E       +   + +D    +G G++ Y L   S       F ID  SG++   + LD
Sbjct: 11  IEEYTGPDPVLVGRLHSDID--SGDGNIKYIL---SGEGAGTIFVIDDKSGNIHATKTLD 65

Query: 125 RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGS 184
           RE   +Y L  +A+D  T+  P        +++ D+NDN P +        V E + VG+
Sbjct: 66  REERAQYTLMAQAVDRDTNR-PLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGT 124

Query: 185 TIWNFTATDADD---GSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQP-LDYETLTSFI 240
           ++   TA+DADD   G++ +L Y ++   P   +FSV+  TG +    P +D E    + 
Sbjct: 125 SVIQVTASDADDPTYGNSAKLVYSILEGQP---YFSVEAQTGIIRTALPNMDREAKEEYH 181

Query: 241 LVVKVTDQAANISERLSTSLTARVVVKDLNDNAP 274
           +V++  D   ++   LS +    + + D   +  
Sbjct: 182 VVIQAKDMGGHMG-GLSGTTKVTITLTDDYKDDD 214

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  134 bits (340), Expect = 1e-36
 Identities = 55/255 (21%), Positives = 95/255 (37%), Gaps = 54/255 (21%)

Query: 284 LIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISE 343
              + E T     +      D DSG +G + Y++SG      F +D   G +   + + +
Sbjct: 8   FFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTL-D 65

Query: 344 YDHQSKFRAVLNITASDHGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPG 402
            + ++++   L   A D     P        +  + ++ + P FL   YHANV E +  G
Sbjct: 66  REERAQYT--LMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVG 123

Query: 403 TYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN 462
           T +I+V A                   D                             G +
Sbjct: 124 TSVIQVTASDA----------------DDPT-------------------------YGNS 142

Query: 463 --LTYMIPAGVADDMFKIDAETGVVTLA-RSLDRETVDQYNLVVHVTDS---KSGDYDTT 516
             L Y I  G     F ++A+TG++  A  ++DRE  ++Y++V+   D      G   TT
Sbjct: 143 AKLVYSILEG--QPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTT 200

Query: 517 NVFITILDVNDNAPE 531
            V IT+ D   +  +
Sbjct: 201 KVTITLTDDYKDDDK 215

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  127 bits (320), Expect = 8e-34
 Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 16/213 (7%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
           W  N   + + E T     +     +D D G +G ++Y L  +   G  F +D  +G + 
Sbjct: 3   WVWNQFFV-IEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGE-GAGTIFVIDDKSGNIH 59

Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIY 286
             + LD E    + L+ +  D+  N    L       V V+D+NDN P F+         
Sbjct: 60  ATKTLDREERAQYTLMAQAVDRDTNRP--LEPPSEFIVKVQDINDNPPEFLHEI--YHAN 115

Query: 287 VSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARFHLDHDKGILSLARVISE 343
           V E++ VG+ V ++TA D D    G++ ++ Y I  G     F ++   GI+  A    +
Sbjct: 116 VPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPY--FSVEAQTGIIRTALPNMD 173

Query: 344 YDHQSKFRAVLNITASDHG--IPPKSSSLVINI 374
            + + ++   + I A D G  +   S +  + I
Sbjct: 174 REAKEEYH--VVIQAKDMGGHMGGLSGTTKVTI 204

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  111 bits (281), Expect = 2e-28
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 419 YVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKI 478
           +V+ + F++ E   P   ++  +               D    N+ Y++    A  +F I
Sbjct: 3   WVWNQFFVIEEYTGPDPVLVGRLHSDI-----------DSGDGNIKYILSGEGAGTIFVI 51

Query: 479 DAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY--DTTNVFITILDVNDNAPEFKSGS 536
           D ++G +   ++LDRE   QY L+    D  +       +   + + D+NDN PEF    
Sbjct: 52  DDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEI 111

Query: 537 CYPITIPENSEA-ANVHTFIATD 558
            Y   +PE S    +V    A+D
Sbjct: 112 -YHANVPERSNVGTSVIQVTASD 133

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 84.6 bits (210), Expect = 6e-19
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 55  KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDHSGAFDIDK 112
           +F   + +  + E   +G +V  V ++D+     G    ++YS+    P      F ++ 
Sbjct: 106 EFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPY-----FSVEA 160

Query: 113 SSGSLVVA-RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPR 166
            +G +  A   +DRE   EY + ++A D        S    + I + D   +  +
Sbjct: 161 QTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  156 bits (396), Expect = 1e-44
 Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 13/213 (6%)

Query: 64  EIKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVAR 121
            + E+   G     +V   S   +     + YS+T        +G F I+  SG L V +
Sbjct: 8   NLPENSR-GPFPQELVRIRSDRDK--NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 64

Query: 122 QLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTL 181
            LDRE    + L   A+D +   N   + + I I ++D+NDN P +        V E + 
Sbjct: 65  PLDRELIARFHLRAHAVDING--NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSK 122

Query: 182 VGSTIWNFTATDADD--GSNGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYET 235
            G+ +   TA DADD    NG LRY ++ Q P     N F++++ TG + T+   LD E 
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK 182

Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
           +  + L+++ TD   N +  LS + TA + V D
Sbjct: 183 VQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  134 bits (340), Expect = 1e-36
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 24/221 (10%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLV---RQYPEGNHFSVDHLTG 223
           W   P+ +P N     G          +D   N  LRY +       P    F ++ ++G
Sbjct: 2   WVIPPINLPENSR---GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISG 58

Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV-SPTRG 282
            L++ +PLD E +  F L     D       ++   +   + V D+NDN P F+     G
Sbjct: 59  QLSVTKPLDRELIARFHLRAHAVDIN---GNQVENPIDIVINVIDMNDNRPEFLHQVWNG 115

Query: 283 SLIYVSEQTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDAR----FHLDHDKGILS 336
           S   V E ++ G++V  +TA+D D  +  NG + Y I            F ++++ G + 
Sbjct: 116 S---VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDII 172

Query: 337 LARVISEYDHQSKFRAVLNITASDHGIPPK---SSSLVINI 374
                 + +   ++   L I A+D    P    S++    I
Sbjct: 173 TVAAGLDREKVQQYT--LIIQATDMEGNPTYGLSNTATAVI 211

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  125 bits (315), Expect = 3e-33
 Identities = 62/264 (23%), Positives = 103/264 (39%), Gaps = 65/264 (24%)

Query: 276 FVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHD 331
           +V P     I + E +R G    ++  +  D   N  + Y ++G   D      F ++  
Sbjct: 2   WVIPP----INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPI 56

Query: 332 KGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSY 391
            G LS+ + + + +  ++F   L   A D       + + I I    ++ + P FL   +
Sbjct: 57  SGQLSVTKPL-DRELIARFH--LRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW 113

Query: 392 HANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYH 451
           + +V E + PGTY++ V A                +  D                     
Sbjct: 114 NGSVPEGSKPGTYVMTVTA----------------IDAD--------------------- 136

Query: 452 MYLISDFSGYN--LTYMI----PAGVADDMFKIDAETGVV-TLARSLDRETVDQYNLVVH 504
                D +  N  L Y I    P+  + +MF I+ ETG + T+A  LDRE V QY L++ 
Sbjct: 137 -----DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQ 191

Query: 505 VTDS----KSGDYDTTNVFITILD 524
            TD       G  +T    IT+ D
Sbjct: 192 ATDMEGNPTYGLSNTATAVITVTD 215

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 90.9 bits (226), Expect = 5e-21
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 21/146 (14%)

Query: 420 VYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDF-SGYNLTYMIPAGVADD---- 474
           V   +  + E++  G +  ++V              SD     +L Y +    AD     
Sbjct: 3   VIPPIN-LPENS-RGPFPQELVRIR-----------SDRDKNLSLRYSVTGPGADQPPTG 49

Query: 475 MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILDVNDNAPEFK 533
           +F I+  +G +++ + LDRE + +++L  H  D       +  ++ I ++D+NDN PEF 
Sbjct: 50  IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFL 109

Query: 534 SGSCYPITIPENSEA-ANVHTFIATD 558
               +  ++PE S+    V T  A D
Sbjct: 110 H-QVWNGSVPEGSKPGTYVMTVTAID 134

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 62  NNEIKEDVPIGFTVGNVVSTDSTGRAGG-GHVMYSLTSLSP-TDHSGAFDIDKSSGSLV- 118
           N  + E    G  V  V + D+       G + Y + S +P T     F I+  +G ++ 
Sbjct: 114 NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIIT 173

Query: 119 VARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVD 159
           VA  LDRE   +Y L ++A D   +     S  A   I + D
Sbjct: 174 VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  152 bits (387), Expect = 2e-43
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 67  EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRE 126
            D P+   VG + S+           MY +        +  F +    G +    +LDRE
Sbjct: 13  IDSPLPHHVGKLTSSVGNKN-----AMYIIEG---ESANTIFKVQGYDGDIYAFERLDRE 64

Query: 127 TCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTI 186
              EY+L    +D    +          I++ D+NDNAP + +      V E + +G+++
Sbjct: 65  KKAEYELTAHIIDRRN-NRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSV 123

Query: 187 WNFTATDADD---GSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVV 243
              TA DADD     +  + Y +++      +F+VD      T    LD E+ +++ ++V
Sbjct: 124 TKVTAEDADDPTVAGHATVTYQIIKGNE---YFTVDDSGVIFTARADLDRESQSAYEIIV 180

Query: 244 KVTDQAANISERLSTSLTARVVVKD 268
           K  D         S++ T  + + D
Sbjct: 181 KAKDALGLTG--ESSTATVIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  134 bits (340), Expect = 8e-37
 Identities = 57/218 (26%), Positives = 84/218 (38%), Gaps = 30/218 (13%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
           W  N + I    D+ +   +            N    Y +  +      F V    G + 
Sbjct: 2   WIWNRMHIREEIDSPLPHHV----GKLTSSVGNKNAMYIIEGE-SANTIFKVQGYDGDIY 56

Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT-RGSLI 285
             + LD E    + L   + D+  N S  L       + V D+NDNAP+FV     GS  
Sbjct: 57  AFERLDREKKAEYELTAHIIDRRNNRS--LEPPSKFIIKVSDINDNAPIFVQKIFNGS-- 112

Query: 286 YVSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARFHLDHDKGILSLAR--- 339
            V E +R+G+ VTK+TA D D      +  VTY I  GNE   F +D    I +      
Sbjct: 113 -VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEY--FTVDDSGVIFTARADLD 169

Query: 340 --VISEYDHQSKFRAVLNITASDH-GIPPKSSSLVINI 374
               S Y         + + A D  G+  +SS+  + I
Sbjct: 170 RESQSAY--------EIIVKAKDALGLTGESSTATVII 199

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  112 bits (282), Expect = 8e-29
 Identities = 43/247 (17%), Positives = 82/247 (33%), Gaps = 57/247 (23%)

Query: 285 IYVSE--QTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVIS 342
           +++ E   + +  HV K       S  N    Y+I G + +  F +    G +     + 
Sbjct: 7   MHIREEIDSPLPHHVGK----LTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERL- 61

Query: 343 EYDHQSKFRAVLNITASDH-GIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIP 401
           + + ++++   L     D              I    ++ + P F+   ++ +V E +  
Sbjct: 62  DREKKAEYE--LTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRL 119

Query: 402 GTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGY 461
           GT + KV A                   D                               
Sbjct: 120 GTSVTKVTAEDA----------------D-------------------------DPTVAG 138

Query: 462 N--LTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDS--KSGDYDTTN 517
           +  +TY I  G  ++ F +D    + T    LDRE+   Y ++V   D+   +G+  T  
Sbjct: 139 HATVTYQIIKG--NEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTAT 196

Query: 518 VFITILD 524
           V I + D
Sbjct: 197 VIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 96.6 bits (241), Expect = 3e-23
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 456 SDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD--Y 513
           S     N  Y+I    A+ +FK+    G +     LDRE   +Y L  H+ D ++     
Sbjct: 26  SSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLE 85

Query: 514 DTTNVFITILDVNDNAPEFKSGSCYPITIPENSEA-ANVHTFIATD 558
             +   I + D+NDNAP F     +  ++PE S    +V    A D
Sbjct: 86  PPSKFIIKVSDINDNAPIFVQKI-FNGSVPEMSRLGTSVTKVTAED 130

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 55  KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDHSGAFDIDK 112
            F + + N  + E   +G +V  V + D+          V Y +   +       F +D 
Sbjct: 103 IFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEY-----FTVDD 157

Query: 113 SSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           S         LDRE+   Y++ V+A D +     +SS   + I + D
Sbjct: 158 SGVIFTARADLDRESQSAYEIIVKAKD-ALGLTGESSTATVIIRLTD 203

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  151 bits (384), Expect = 5e-43
 Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 14/208 (6%)

Query: 65  IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
           ++E     +     + +D     G G + Y L+          F I++++G +   ++LD
Sbjct: 10  LEEYTGSDYQYVGKLHSDQD--RGDGSLKYILSG---DGAGDLFIINENTGDIQATKRLD 64

Query: 125 RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGS 184
           RE  P Y L  +A++  T   P        I+I D+NDN P + ++  T  V E   VG+
Sbjct: 65  REEKPVYILRAQAVNRRTG-RPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGT 123

Query: 185 TIWNFTATDADD---GSNGELRYGLVRQYPEGNHFSVDHLTGTL-TLLQPLDYETLTSFI 240
            +   TATDADD   G++ ++ Y +++  P   +FSV+  TG + T L  +D E    + 
Sbjct: 124 FVVQVTATDADDPTYGNSAKVVYSILQGQP---YFSVESETGIIKTALLNMDRENREQYQ 180

Query: 241 LVVKVTDQAANISERLSTSLTARVVVKD 268
           +V++  D    +   LS + T  + + D
Sbjct: 181 VVIQAKDMGGQMG-GLSGTTTVNITLTD 207

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  127 bits (320), Expect = 7e-34
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 18/216 (8%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
           W  N   + + E T           +D D G +G L+Y L      G+ F ++  TG + 
Sbjct: 2   WMANQFFL-LEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGD-GAGDLFIINENTGDIQ 58

Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIY 286
             + LD E    +IL  +  ++       +       + + D+NDN P+F          
Sbjct: 59  ATKRLDREEKPVYILRAQAVNRRTG--RPVEPESEFIIKIHDINDNEPIFTKDV--YTAT 114

Query: 287 VSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARFHLDHDKGILSLARVISE 343
           V E   VG+ V ++TA D D    G++ +V Y I  G     F ++ + GI+  A +  +
Sbjct: 115 VPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPY--FSVESETGIIKTALLNMD 172

Query: 344 YDHQSKFRAVLNITASDHGIPPKSSS----LVINIL 375
            +++ ++   + I A D G      S    + I + 
Sbjct: 173 RENREQY--QVVIQAKDMGGQMGGLSGTTTVNITLT 206

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  117 bits (294), Expect = 3e-30
 Identities = 51/256 (19%), Positives = 90/256 (35%), Gaps = 57/256 (22%)

Query: 276 FVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGIL 335
           +++        + E T            DQD G +G + Y++SG      F ++ + G +
Sbjct: 2   WMANQ---FFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDI 57

Query: 336 SLARVISEYDHQSKFRAVLNITASDHG-IPPKSSSLVINILSETVSTSLPTFLSPSYHAN 394
              + + + + +  +   L   A +     P        I    ++ + P F    Y A 
Sbjct: 58  QATKRL-DREEKPVYI--LRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTAT 114

Query: 395 VSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYL 454
           V E A  GT++++V A                   D                        
Sbjct: 115 VPEMADVGTFVVQVTATDA----------------D------------------------ 134

Query: 455 ISDFSGYN--LTYMIPAGVADDMFKIDAETGVVTLA-RSLDRETVDQYNLVVHVTDS--- 508
                G +  + Y I  G     F +++ETG++  A  ++DRE  +QY +V+   D    
Sbjct: 135 -DPTYGNSAKVVYSILQG--QPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQ 191

Query: 509 KSGDYDTTNVFITILD 524
             G   TT V IT+ D
Sbjct: 192 MGGLSGTTTVNITLTD 207

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  108 bits (271), Expect = 4e-27
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 15/143 (10%)

Query: 419 YVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKI 478
           ++  + FL+ E        +  +               D    +L Y++    A D+F I
Sbjct: 2   WMANQFFLLEEYTGSDYQYVGKLHSDQ-----------DRGDGSLKYILSGDGAGDLFII 50

Query: 479 DAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD--YDTTNVFITILDVNDNAPEFKSGS 536
           +  TG +   + LDRE    Y L     + ++G      +   I I D+NDN P F +  
Sbjct: 51  NENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIF-TKD 109

Query: 537 CYPITIPENSEA-ANVHTFIATD 558
            Y  T+PE ++    V    ATD
Sbjct: 110 VYTATVPEMADVGTFVVQVTATD 132

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 55  KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDHSGAFDIDK 112
            F K +    + E   +G  V  V +TD+     G    V+YS+    P      F ++ 
Sbjct: 105 IFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPY-----FSVES 159

Query: 113 SSGSLVVA-RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
            +G +  A   +DRE   +Y++ ++A D        S    + I + D
Sbjct: 160 ETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  151 bits (382), Expect = 3e-42
 Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 29/238 (12%)

Query: 64  EIKEDVPIGFTVGNVVSTDST-GRAGGGHVMYSL--TSLSPTDHSGAFDIDKSSGSLVVA 120
           ++  D   G  +  V +            +   L  T  +    +    I + +G L + 
Sbjct: 11  KLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQ 70

Query: 121 RQLDRETCPEYK------------LEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWG 168
           R LD  +  +              L+V    TS            ++     N + P   
Sbjct: 71  RSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACS 130

Query: 169 ENP----------LTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSV 218
                         +  + E+   G+                 + Y L+    EG  F  
Sbjct: 131 SLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLE--GEGLPFRS 188

Query: 219 DHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF 276
              +  ++    LD E    + LV   T  A   +      +   V V D +D+AP F
Sbjct: 189 APDSLEVSTRWALDREQREKYELVAVCTVHAG--AREEVVMVPFPVTVYDEDDSAPEF 244

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  121 bits (304), Expect = 2e-31
 Identities = 37/226 (16%), Positives = 63/226 (27%), Gaps = 32/226 (14%)

Query: 176 VNEDTLVGSTIWNFTAT--DADDGSNGELRYGLVRQY----PEGNHFSVDHLTGTLTLLQ 229
           +  D   G+ +    A     ++  +  L   L   Y     E N   +   TG L L +
Sbjct: 12  LYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQR 71

Query: 230 PLDYETLTSF------------ILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFV 277
            LD+ +                 L V ++  +    E       ARV     N + P   
Sbjct: 72  SLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGE-CQWPGCARVYFSFFNTSFPACS 130

Query: 278 SPTRGSL--------IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLD 329
           S     L          + E    G+         Q       V Y +  G     F   
Sbjct: 131 SLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLP-FRSA 189

Query: 330 HDKGILSLARVISEYDHQSKFRAVLNITASDH-GIPPKSSSLVINI 374
            D   +S    +   D + + +  L    + H G   +   +   +
Sbjct: 190 PDSLEVSTRWAL---DREQREKYELVAVCTVHAGAREEVVMVPFPV 232

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  115 bits (288), Expect = 3e-29
 Identities = 45/262 (17%), Positives = 90/262 (34%), Gaps = 45/262 (17%)

Query: 287 VSEQTRVGSHVTKMTAV--DQDSGDNGRVTYVI-----SGGNEDARFHLDHDKGILSLAR 339
           +      G+ +  + A+    +   + R+   +     +  +E+    +  D G+L L R
Sbjct: 12  LYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQR 71

Query: 340 VISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVS--- 396
            +   DH S  +    ++  + G P  +  L + +   + ++           A V    
Sbjct: 72  SL---DHSSWEK----LSVRNRGFPLLTVYLKVFL---SPTSLREGECQWPGCARVYFSF 121

Query: 397 -EDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLI 455
              + P        +  P           F + E+  PGT+    +              
Sbjct: 122 FNTSFP-----ACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQ---------- 166

Query: 456 SDFSGYN--LTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY 513
             F      + Y +  G     F+   ++  V+   +LDRE  ++Y LV   T   +G  
Sbjct: 167 --FLCPQISVAYRLLEG-EGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTV-HAGAR 222

Query: 514 ---DTTNVFITILDVNDNAPEF 532
                    +T+ D +D+APEF
Sbjct: 223 EEVVMVPFPVTVYDEDDSAPEF 244

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 88.4 bits (219), Expect = 6e-20
 Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 10/122 (8%)

Query: 47  TPNMVSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGG--GHVMYSLTSLSPTDH 104
           +        F +   +  I+E+ P G      +      +       V Y L        
Sbjct: 130 SSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPV---QFLCPQISVAYRLLE----GE 182

Query: 105 SGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNA 164
              F     S  +     LDRE   +Y+L       +  +  +   V   + + D +D+A
Sbjct: 183 GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHA-GAREEVVMVPFPVTVYDEDDSA 241

Query: 165 PR 166
           P 
Sbjct: 242 PE 243

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 78.4 bits (193), Expect = 2e-16
 Identities = 25/198 (12%), Positives = 50/198 (25%), Gaps = 60/198 (30%)

Query: 386 FLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSP 445
           F   +Y   +  D   GT ++ V A                + +                
Sbjct: 3   FSRDAYWEKLYVDQAAGTPLLYVHA----------------LRDAPEEVPS--------- 37

Query: 446 STYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYN----- 500
                H+Y       +           ++  +I  +TG++ L RSLD  + ++ +     
Sbjct: 38  FRLGQHLYGTYRTRLH----------ENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRG 87

Query: 501 -------LVVHVTDSKSGD---YDTTNVFITILDVNDNAPEFKSGSC---------YPIT 541
                  L V ++ +   +          +     N + P   S                
Sbjct: 88  FPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFR 147

Query: 542 IPENSEA-ANVHTFIATD 558
           I EN          +   
Sbjct: 148 IRENRPPGTFHQFRLLPV 165

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  149 bits (378), Expect = 6e-42
 Identities = 66/213 (30%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHS-GAFDIDKSSGSLVVARQ 122
              E+   G    N+V   S  R     V YS+T         G F I++ +G L V + 
Sbjct: 8   SCPENEK-GEFPKNLVQIKSN-RDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65

Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLV 182
           LDRE   +Y L   A+ ++         + I I + D NDN P + +      V E  + 
Sbjct: 66  LDREAIAKYILYSHAVSSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123

Query: 183 GSTIWNFTATDADDGS---NGELRYGLVRQYPEG---NHFSVDHLTGTL-TLLQPLDYET 235
           G+++   +ATDADD     N  + Y +V Q PE    N F+V+  TG +  L   LD E+
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES 183

Query: 236 LTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
             ++ LVV+  D      E LST+  A + VKD
Sbjct: 184 YPTYTLVVQAADLQ---GEGLSTTAKAVITVKD 213

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  134 bits (339), Expect = 2e-36
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 24/222 (10%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTG 223
           W    ++ P NE    G    N     ++     ++ Y +  Q    P    F ++  TG
Sbjct: 2   WVIAAISCPENEK---GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETG 58

Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT-RG 282
            L + QPLD E +  +IL         +  E +   +   + V D NDN P F      G
Sbjct: 59  WLKVTQPLDREAIAKYILYSHAVS---SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115

Query: 283 SLIYVSEQTRVGSHVTKMTAVDQDSG---DNGRVTYVISGGNEDAR----FHLDHDKGIL 335
           S   V+E    G+ V K++A D D      N  + Y I   + +      F ++ D G++
Sbjct: 116 S---VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVI 172

Query: 336 SLARVISEYDHQSKFRAVLNITASDHGIPPKSSS--LVINIL 375
           S+     + +    +   L + A+D      S++   VI + 
Sbjct: 173 SVLTSGLDRESYPTYT--LVVQAADLQGEGLSTTAKAVITVK 212

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  116 bits (292), Expect = 5e-30
 Identities = 52/246 (21%), Positives = 86/246 (34%), Gaps = 45/246 (18%)

Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHDKGILSLARV 340
           I   E  + G     +  +  +     +V Y I+G   D      F ++ + G L + + 
Sbjct: 7   ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65

Query: 341 ISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAI 400
           + + +  +K+   L   A           + I I     + + P F    +  +V+E A+
Sbjct: 66  L-DREAIAKYI--LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122

Query: 401 PGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSG 460
           PGT ++KV A                   D    TY   +                    
Sbjct: 123 PGTSVMKVSATDA----------------DDDVNTYNAAIA------------------- 147

Query: 461 YNLTYMIPAGVADDMFKIDAETGVV-TLARSLDRETVDQYNLVVHVTDS-KSGDYDTTNV 518
           Y +    P     +MF ++ +TGV+  L   LDRE+   Y LVV   D    G   T   
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKA 207

Query: 519 FITILD 524
            IT+ D
Sbjct: 208 VITVKD 213

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 89.7 bits (223), Expect = 9e-21
 Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 24/141 (17%)

Query: 427 VSEDAIPGTYIIKVVARSPSTYVYHMYLISDF-SGYNLTYMIPAGVADD----MFKIDAE 481
             E+   G +   +V            + S+      + Y I    AD     +F I+ E
Sbjct: 9   CPENE-KGEFPKNLVQ-----------IKSNRDKETKVFYSITGQGADKPPVGVFIIERE 56

Query: 482 TGVVTLARSLDRETVDQYNLVVHVTDSKSGDY---DTTNVFITILDVNDNAPEFKSGSCY 538
           TG + + + LDRE + +Y L  H     S      D   + IT+ D NDN PEF +   +
Sbjct: 57  TGWLKVTQPLDREAIAKYILYSHAVS--SNGEAVEDPMEIVITVTDQNDNRPEF-TQEVF 113

Query: 539 PITIPENSEA-ANVHTFIATD 558
             ++ E +    +V    ATD
Sbjct: 114 EGSVAEGAVPGTSVMKVSATD 134

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 62  NNEIKEDVPIGFTVGNVVSTDSTGRAGGGH--VMYSLTSLSP-TDHSGAFDIDKSSGSLV 118
              + E    G +V  V +TD+       +  + Y++ S  P   H   F +++ +G + 
Sbjct: 114 EGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVIS 173

Query: 119 VA-RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           V    LDRE+ P Y L V+A D        S+     I + D
Sbjct: 174 VLTSGLDRESYPTYTLVVQAADLQG--EGLSTTAKAVITVKD 213

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  144 bits (365), Expect = 3e-40
 Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 18/219 (8%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
              +P+ IP N+       +     +D  +GS   L    V Q P+G  F ++  TG+++
Sbjct: 3   IVVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKG-TFRINENTGSVS 61

Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPT-RGSLI 285
           + + LD ET+ ++ L V+ TD +      L   +   V+V D NDN P+F      G   
Sbjct: 62  VTRTLDRETIATYQLYVETTDASGKT---LEGPVPLEVIVIDQNDNRPIFREGPYIGH-- 116

Query: 286 YVSEQTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDAR----FHLDHDKGILSLAR 339
            V E +  G+ V +MTA D D  + DN  + Y I     D      F++D +KG +    
Sbjct: 117 -VMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVV 175

Query: 340 VISEYDHQSKFRAV--LNITASDHG--IPPKSSSLVINI 374
             +  D ++       L I A D        + +    I
Sbjct: 176 SPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATI 214

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  144 bits (365), Expect = 4e-40
 Identities = 67/213 (31%), Positives = 99/213 (46%), Gaps = 19/213 (8%)

Query: 67  EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLT-SLSPTDHSGAFDIDKSSGSLVVARQLDR 125
           +  P    VG VV +D           + LT      D  G F I++++GS+ V R LDR
Sbjct: 14  QRQPFPRDVGKVVDSDR-----PEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68

Query: 126 ETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGST 185
           ET   Y+L V   D S         V +++ ++D NDN P + E P    V E +  G+T
Sbjct: 69  ETIATYQLYVETTDAS--GKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126

Query: 186 IWNFTATDADD--GSNGELRYGLVRQYPEG---NHFSVDHLTGTLTLLQP---LDYETL- 236
           +   TA DADD    N  LRY + +Q P+    N F +D   G +  +     LD ETL 
Sbjct: 127 VMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE 186

Query: 237 -TSFILVVKVTDQAANISERLSTSLTARVVVKD 268
              + L+++  D A      L+ + TA +V+ D
Sbjct: 187 NPKYELIIEAQDMAGL-DVGLTGTATATIVIDD 218

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  115 bits (290), Expect = 9e-30
 Identities = 48/254 (18%), Positives = 89/254 (35%), Gaps = 59/254 (23%)

Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEY 344
           I  +++      V K+   D+  G   R+T      +    F ++ + G +S+ R + + 
Sbjct: 10  IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTL-DR 68

Query: 345 DHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTY 404
           +  + ++  L +  +D         + + ++    + + P F    Y  +V E +  GT 
Sbjct: 69  ETIATYQ--LYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126

Query: 405 IIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN-- 462
           ++++ A                   D                          D +  N  
Sbjct: 127 VMRMTAFDA----------------D--------------------------DPATDNAL 144

Query: 463 LTYMI----PAGVADDMFKIDAETGVVTLARS---LDRETVD--QYNLVVHVTDS---KS 510
           L Y I    P   + +MF ID E G +    S   LDRET++  +Y L++   D      
Sbjct: 145 LRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDV 204

Query: 511 GDYDTTNVFITILD 524
           G   T    I I D
Sbjct: 205 GLTGTATATIVIDD 218

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 96.7 bits (241), Expect = 5e-23
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 14/142 (9%)

Query: 420 VYTEVFL-VSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKI 478
           V + + +  ++       + KVV                   + LT           F+I
Sbjct: 4   VVSPILIPENQRQPFPRDVGKVVDSDRPEGSK----------FRLTGKGVDQDPKGTFRI 53

Query: 479 DAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILDVNDNAPEFKSGSC 537
           +  TG V++ R+LDRET+  Y L V  TD+          + + ++D NDN P F+ G  
Sbjct: 54  NENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGP- 112

Query: 538 YPITIPENSEA-ANVHTFIATD 558
           Y   + E S     V    A D
Sbjct: 113 YIGHVMEGSPTGTTVMRMTAFD 134

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGG-GHVMYSLTSLSPTD-HSGAFDIDKSSGSLVVAR 121
            + E  P G TV  + + D+   A     + Y++   +P       F ID   G +V   
Sbjct: 116 HVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVV 175

Query: 122 Q---LDRETC--PEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
               LDRET   P+Y+L + A D +      +      I I D
Sbjct: 176 SPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 98.3 bits (246), Expect = 9e-25
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 4/121 (3%)

Query: 155 IEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGN 214
                 NDN+PR+ ++     + E++  G+ I    A D D G NG++ Y          
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61

Query: 215 H-FSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNA 273
               +D  +G L++L  +D E +      V   D+        +   T  + +KD NDN 
Sbjct: 62  RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQP---PKTDKATVVLNIKDENDNV 118

Query: 274 P 274
           P
Sbjct: 119 P 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 15/119 (12%)

Query: 264 VVVKDLNDNAPVFVSPTRGSLIY---VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGG 320
                 NDN+P F        +Y   ++E +  G+ + ++ A D D G NG++ YV    
Sbjct: 2   SSGSSGNDNSPRFEKS-----VYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAA 56

Query: 321 NEDAR--FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSS--SLVINIL 375
            E  R    LD   G LS+   I   D +   +    + A D G PPK+   ++V+NI 
Sbjct: 57  TESVRRLLRLDETSGWLSVLHRI---DREEVNQLRFTVMARDRGQPPKTDKATVVLNIK 112

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 75.6 bits (187), Expect = 8e-17
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 65  IKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQL 123
           + E+   G  +  + + D   G    G + Y   + +         +D++SG L V  ++
Sbjct: 23  LAENSAPGTPILQLRAADLDVGV--NGQIEYVFGAATE-SVRRLLRLDETSGWLSVLHRI 79

Query: 124 DRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAP 165
           DRE   + +  V A D      P++    + + I D NDN P
Sbjct: 80  DREEVNQLRFTVMARD--RGQPPKTDKATVVLNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 21/111 (18%)

Query: 427 VSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN--LTYMIPAGVAD--DMFKIDAET 482
           ++E++ PGT I+++ A              D  G N  + Y+  A       + ++D  +
Sbjct: 23  LAENSAPGTPILQLRAADL-----------D-VGVNGQIEYVFGAATESVRRLLRLDETS 70

Query: 483 GVVTLARSLDRETVDQYNLVVHVTDSKSGDY---DTTNVFITILDVNDNAP 530
           G +++   +DRE V+Q    V   D   G     D   V + I D NDN P
Sbjct: 71  GWLSVLHRIDREEVNQLRFTVMARD--RGQPPKTDKATVVLNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 520 ITILDVNDNAPEFKSGSCYPITIPENS 546
            +    NDN+P F   S Y   + ENS
Sbjct: 2   SSGSSGNDNSPRF-EKSVYEADLAENS 27

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 95.8 bits (239), Expect = 6e-24
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 164 APRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDH 220
              W   P+ +P N     G          +    N  LRY +       P    F ++ 
Sbjct: 1   GSDWVIPPINLPENSR---GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINP 57

Query: 221 LTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF 276
           ++G L++ +PLD E +  F L     D       ++   +   + V D+NDN P F
Sbjct: 58  ISGQLSVTKPLDRELIARFHLRAHAVDIN---GNQVENPIDIVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 82.3 bits (204), Expect = 3e-19
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 18/114 (15%)

Query: 425 FLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDF-SGYNLTYMIPAGVADD----MFKID 479
             + E++  G +  ++V            + S      +L Y +    AD     +F I+
Sbjct: 9   INLPENS-RGPFPQELVR-----------IRSGRDKNLSLRYSVTGPGADQPPTGIFIIN 56

Query: 480 AETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY-DTTNVFITILDVNDNAPEF 532
             +G +++ + LDRE + +++L  H  D       +  ++ I ++D+NDN PEF
Sbjct: 57  PISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 64  EIKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSL-SPTDHSGAFDIDKSSGSLVVAR 121
            + E+   G     +V   S   +     + YS+T   +    +G F I+  SG L V +
Sbjct: 10  NLPENSR-GPFPQELVRIRSGRDK--NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 66

Query: 122 QLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPR 166
            LDRE    + L   A+D +   N   + + I I ++D+NDN P 
Sbjct: 67  PLDRELIARFHLRAHAVDING--NQVENPIDIVINVIDMNDNRPE 109

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 61.1 bits (149), Expect = 8e-12
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 273 APVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHL 328
              +V P     I + E +R G    ++  +      N  + Y ++G   D      F +
Sbjct: 1   GSDWVIPP----INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFII 55

Query: 329 DHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
           +   G LS+ + + + +  ++F   L   A D       + + I I
Sbjct: 56  NPISGQLSVTKPL-DRELIARFH--LRAHAVDINGNQVENPIDIVI 98

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 95.9 bits (239), Expect = 7e-24
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 165 PRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHL 221
             W   P+ +   ED    + I     +D  +    ++ Y    +    P    F  +  
Sbjct: 10  RAWITAPVALREGEDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKD 68

Query: 222 TGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF 276
           TG L +   LD E    F+L     D        +   L  R+ V D+NDN PVF
Sbjct: 69  TGELNVTSILDREETPFFLLTGYALDAR---GNNVEKPLELRIKVLDINDNEPVF 120

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 85.8 bits (213), Expect = 3e-20
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 67  EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDR 125
           ED+     +  + S  +  R  G  + Y  T         G F  +K +G L V   LDR
Sbjct: 23  EDLSKKNPIAKIHSDLAEER--GLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDR 80

Query: 126 ETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGEN 170
           E  P + L   ALD     N     + ++I+++D+NDN P + ++
Sbjct: 81  EETPFFLLTGYALDARG--NNVEKPLELRIKVLDINDNEPVFTQD 123

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 83.1 bits (206), Expect = 2e-19
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 426 LVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADD----MFKIDAE 481
              ED      I K+ +                 G  +TY        +    +F  + +
Sbjct: 20  REGEDLSKKNPIAKIHSDLAEE-----------RGLKITYKYTGKGITEPPFGIFVFNKD 68

Query: 482 TGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TTNVFITILDVNDNAPEF 532
           TG + +   LDRE    + L  +  D++  + +    + I +LD+NDN P F
Sbjct: 69  TGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHDKGILSLARV 340
           +   E     + + K+ + D       ++TY  +G          F  + D G L++  +
Sbjct: 19  LREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSI 77

Query: 341 ISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
           + + +    F   L   A D         L + I
Sbjct: 78  L-DREETPFFL--LTGYALDARGNNVEKPLELRI 108

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 86.7 bits (216), Expect = 1e-20
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 155 IEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEG- 213
                 NDN P + E  + + + E+  VG+++    ATDAD GSN E+RY    Q     
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61

Query: 214 -NHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLN 270
              F++++ TG +T+ + LD E      + V  +D ++          T  + V D+N
Sbjct: 62  KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSS-----TPARATVTINVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 71.7 bits (177), Expect = 1e-15
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 14/118 (11%)

Query: 264 VVVKDLNDNAPVFVSPTRGSLIY---VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISG- 319
                 NDN PVF             + E   VG+ V ++ A D D G N  + Y+    
Sbjct: 2   SSGSSGNDNRPVFKEG-----QVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQ 56

Query: 320 GNEDAR--FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINIL 375
                +  F L++  G++++ R +   D +      + + ASD    P  +++ IN+ 
Sbjct: 57  VAPATKRLFALNNTTGLITVQRSL---DREETAIHKVTVLASDGSSTPARATVTINVT 111

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 65  IKEDVPIGFTVGNVVSTDS-TGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQL 123
           I E+ P+G +V  + +TD+  G      + Y   +         F ++ ++G + V R L
Sbjct: 23  IPENAPVGTSVIQLHATDADIGS--NAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSL 80

Query: 124 DRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDVN 161
           DRE    +K+ V A D        + A A + I + DVN
Sbjct: 81  DREETAIHKVTVLASD-----GSSTPARATVTINVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 59.0 bits (144), Expect = 5e-11
 Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 44/145 (30%)

Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSP--STYGNYVYTEVFLVSEDAIPGTYIIKVV 441
           P F       ++ E+A  GT +I++ A      +     Y     V+             
Sbjct: 12  PVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK--------- 62

Query: 442 ARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNL 501
                                            +F ++  TG++T+ RSLDRE    + +
Sbjct: 63  --------------------------------RLFALNNTTGLITVQRSLDREETAIHKV 90

Query: 502 VVHVTDSKSGDYDTTNVFITILDVN 526
            V  +D  S       V I + DVN
Sbjct: 91  TVLASD-GSSTPARATVTINVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 520 ITILDVNDNAPEFKSGSCYPITIPENS 546
            +    NDN P FK      + IPEN+
Sbjct: 2   SSGSSGNDNRPVFKE-GQVEVHIPENA 27

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 81.3 bits (201), Expect = 5e-19
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
              +P+ IP N+       +     +D  +GS   L    V Q P+G  F ++  TG+++
Sbjct: 3   IVVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKG-TFRINENTGSVS 61

Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
           + + LD ET+ ++ L V+ TD +    + L   +   V+V D
Sbjct: 62  VTRTLDRETIATYQLYVETTDAS---GKTLEGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 426 LVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVV 485
             ++       + KVV                   + LT           F+I+  TG V
Sbjct: 11  PENQRQPFPRDVGKVVDSDRPEGSK----------FRLTGKGVDQDPKGTFRINENTGSV 60

Query: 486 TLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILD 524
           ++ R+LDRET+  Y L V  TD+          + + ++D
Sbjct: 61  SVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 67  EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLT-SLSPTDHSGAFDIDKSSGSLVVARQLDR 125
           +  P    VG VV +D           + LT      D  G F I++++GS+ V R LDR
Sbjct: 14  QRQPFPRDVGKVVDSDR-----PEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68

Query: 126 ETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           ET   Y+L V   D   S       V +++ ++D
Sbjct: 69  ETIATYQLYVETTD--ASGKTLEGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 285 IYVSEQTR--VGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVIS 342
           I + E  R      V K+   D+  G   R+T      +    F ++ + G +S+ R + 
Sbjct: 8   ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTL- 66

Query: 343 EYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
           + +  + ++  L +  +D         + + +
Sbjct: 67  DRETIATYQ--LYVETTDASGKTLEGPVPLEV 96

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 165 PRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHL 221
             W   P++ P NE       +       ++    G++ Y +  Q    P    F ++  
Sbjct: 4   GSWVIPPISCPENEKGPFPKNL---VQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60

Query: 222 TGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
           TG L + +PLD E + ++ L              +   +   + V D
Sbjct: 61  TGWLKVTEPLDRERIATYTLFSHAVSSN---GNAVEDPMEILITVTD 104

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 67  EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDR 125
           E  P    +  + S         G V YS+T     T   G F I++ +G L V   LDR
Sbjct: 17  EKGPFPKNLVQIKSNKDKE----GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDR 72

Query: 126 ETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           E    Y L   A+ ++   N     + I I + D
Sbjct: 73  ERIATYTLFSHAVSSNG--NAVEDPMEILITVTD 104

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 61.2 bits (149), Expect = 6e-12
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 14/108 (12%)

Query: 273 APVF--VSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----F 326
            P+   V P     I   E  + G     +  +  +    G+V Y I+G   D      F
Sbjct: 1   GPLGSWVIPP----ISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVF 55

Query: 327 HLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
            ++ + G L +   + + +  + +   L   A           + I I
Sbjct: 56  IIERETGWLKVTEPL-DRERIATYT--LFSHAVSSNGNAVEDPMEILI 100

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 462 NLTYMIPAGVADD----MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TT 516
            + Y I    AD     +F I+ ETG + +   LDRE +  Y L  H   S     +   
Sbjct: 37  KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPM 96

Query: 517 NVFITILD 524
            + IT+ D
Sbjct: 97  EILITVTD 104

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
                ++IP N+       +     +D   GS  +L    V Q P+G  F ++  +G ++
Sbjct: 2   IVAPSISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKG-IFKINENSGEVS 60

Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
           + + LD E + S+ L V+ TD+     + +   +   ++V D
Sbjct: 61  VTKALDREAIPSYQLQVETTDEN---GKTIEGPVDLEILVID 99

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 64  EIKE--DVPIGFTVGNVVSTDSTGRAGGGHVMYSLT-SLSPTDHSGAFDIDKSSGSLVVA 120
            I E   +P    VG VV +D             L       +  G F I+++SG + V 
Sbjct: 8   SIPENQRIPFPKIVGRVVVSDR-----IPGSKIKLYGKGVDQEPKGIFKINENSGEVSVT 62

Query: 121 RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           + LDRE  P Y+L+V   D   +       V ++I ++D
Sbjct: 63  KALDREAIPSYQLQVETTD--ENGKTIEGPVDLEILVID 99

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 285 IYVSEQTR--VGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVIS 342
           I + E  R      V ++   D+  G   ++            F ++ + G +S+ + + 
Sbjct: 7   ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKAL- 65

Query: 343 EYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
           + +    ++  L +  +D         + + I
Sbjct: 66  DREAIPSYQ--LQVETTDENGKTIEGPVDLEI 95

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 427 VSEDAIP--GTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGV 484
           + E+        + +VV                     L           +FKI+  +G 
Sbjct: 9   IPENQRIPFPKIVGRVVVSDRIPGSK----------IKLYGKGVDQEPKGIFKINENSGE 58

Query: 485 VTLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILD 524
           V++ ++LDRE +  Y L V  TD          ++ I ++D
Sbjct: 59  VSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 17/109 (15%)

Query: 420 VYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYN--LTYMIPAGVADDMFK 477
           V+ + F++ E        +  +              SD    +  + Y++    A  +F 
Sbjct: 4   VWNQFFVLEEYTGTDPLYVGKLH-------------SDMDRGDGSIKYILSGEGAGIVFT 50

Query: 478 IDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGD--YDTTNVFITILD 524
           ID  TG +   + LDRE   QY L     D ++G      +   I I D
Sbjct: 51  IDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
           W  N   +   E T           +D D G +G ++Y L  +   G  F++D  TG + 
Sbjct: 3   WVWNQFFVL-EEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEG-AGIVFTIDDTTGDIH 59

Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
            +Q LD E  + + L  +  D+       +       + ++D
Sbjct: 60  AIQRLDREERSQYTLRAQALDRRTGRP--MEPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 64.7 bits (158), Expect = 3e-13
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 67  EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRE 126
           E           + +D     G G + Y L+          F ID ++G +   ++LDRE
Sbjct: 13  EYTGTDPLYVGKLHSDMDR--GDGSIKYILSG---EGAGIVFTIDDTTGDIHAIQRLDRE 67

Query: 127 TCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
              +Y L  +ALD  T   P        I+I D
Sbjct: 68  ERSQYTLRAQALDRRT-GRPMEPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 285 IYVSE-QTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISE 343
            +V E  T            D D G +G + Y++SG      F +D   G +   + + +
Sbjct: 8   FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRL-D 65

Query: 344 YDHQSKFRAVLNITASDHGIPP---KSSSLVINIL 375
            + +S++   L   A D          S  +I I 
Sbjct: 66  REERSQYT--LRAQALDRRTGRPMEPESEFIIKIQ 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 72.5 bits (178), Expect = 6e-16
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 13/107 (12%)

Query: 420 VYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKID 479
           V+ ++F++ E + P   ++  +               D     + Y++    A  +F+I+
Sbjct: 3   VWNQMFVLEEFSGPEPILVGRLHTDL-----------DPGSKKIKYILSGDGAGTIFQIN 51

Query: 480 AETGVVTLARSLDRETVDQYNLVVHVTDSKSGDY--DTTNVFITILD 524
             TG +   + LDRE   +Y L     D ++       +   I + D
Sbjct: 52  DITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 63.6 bits (155), Expect = 8e-13
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLT 226
           W  N + +           +     TD D G + +++Y L      G  F ++ +TG + 
Sbjct: 2   WVWNQMFVLEEFSGPEPILV-GRLHTDLDPG-SKKIKYILSGD-GAGTIFQINDITGDIH 58

Query: 227 LLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
            ++ LD E    + L  +  D     ++ L       + V+D
Sbjct: 59  AIKRLDREEKAEYTLTAQAVDF--ETNKPLEPPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 65  IKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLD 124
           + E+      +  V    +    G   + Y L+          F I+  +G +   ++LD
Sbjct: 9   VLEEFSGPEPI-LVGRLHTDLDPGSKKIKYILSG---DGAGTIFQINDITGDIHAIKRLD 64

Query: 125 RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           RE   EY L  +A+D  T+  P        I++ D
Sbjct: 65  REEKAEYTLTAQAVDFETNK-PLEPPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 287 VSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDH 346
           + E +     +      D D G + ++ Y++SG      F ++   G +   + + + + 
Sbjct: 10  LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRL-DREE 67

Query: 347 QSKFRAVLNITASDHGIPP---KSSSLVINIL 375
           ++++   L   A D          S  +I + 
Sbjct: 68  KAEYT--LTAQAVDFETNKPLEPPSEFIIKVQ 97

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 171 PLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQP 230
           P+ IP N+      ++     ++  +G+   L    V Q P+G  F ++ ++G +++ +P
Sbjct: 6   PILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKG-IFRINEISGDVSVTRP 64

Query: 231 LDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
           LD E + ++ L V+VTD +  I   +   +   + V D
Sbjct: 65  LDREAIANYELEVEVTDLSGKI---IDGPVRLDISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 64  EIKE--DVPIGFTVGNVVSTDSTGRAGGGHVMYSLT-SLSPTDHSGAFDIDKSSGSLVVA 120
            I E    P   +VG V+ ++     G     + L+      D  G F I++ SG + V 
Sbjct: 8   LIPENQRPPFPRSVGKVIRSE-----GTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVT 62

Query: 121 RQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           R LDRE    Y+LEV   D   S       V + I ++D
Sbjct: 63  RPLDREAIANYELEVEVTD--LSGKIIDGPVRLDISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 461 YNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYD-TTNVF 519
           + L+          +F+I+  +G V++ R LDRE +  Y L V VTD      D    + 
Sbjct: 35  FRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLD 94

Query: 520 ITILD 524
           I+++D
Sbjct: 95  ISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 285 IYVSEQTR--VGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVIS 342
           I + E  R      V K+   +   G   R++      +    F ++   G +S+ R + 
Sbjct: 7   ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPL- 65

Query: 343 EYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
           + +  + +   L +  +D         + ++I
Sbjct: 66  DREAIANYE--LEVEVTDLSGKIIDGPVRLDI 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 82/527 (15%), Positives = 165/527 (31%), Gaps = 141/527 (26%)

Query: 55  KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGA---FDID 111
            F       ++ +D+P      +++S +        H++     +S    SG    F   
Sbjct: 28  AFVDNFDCKDV-QDMP-----KSILSKEEID-----HII-----MSKDAVSGTLRLFWTL 71

Query: 112 KSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDV--NDNAPRWGE 169
            S    +V + ++      YK  +  +   T     S    + IE  D   NDN      
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPSMMTRMYIEQRDRLYNDNQVF--- 126

Query: 170 NPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTG----TL 225
               +   +  L                   +LR  L+   P  N   +D + G     +
Sbjct: 127 AKYNVSRLQPYL-------------------KLRQALLELRPAKN-VLIDGVLGSGKTWV 166

Query: 226 TLLQPLDYETLTSF---ILVVKV---------TDQAANISERLSTSLTARVVVKDLNDNA 273
            L   L Y+        I  + +          +    +  ++  + T+R    D + N 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS---DHSSNI 223

Query: 274 PVFVSPTRGSL-IYVSEQTRVGS-----HVTKMTAVD------------QDSGDNGRVTY 315
            + +   +  L   +  +          +V    A +            +       VT 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ----VTD 279

Query: 316 VISGGNEDARFHLDHDKGILSLARVISEYDHQSK--FRAVLNITASDHGIPP---KSSSL 370
            +S         LDH    L+          + K      L+    D  +P     ++  
Sbjct: 280 FLSAATT-THISLDHHSMTLT--------PDEVKSLLLKYLDCRPQD--LPREVLTTNPR 328

Query: 371 VINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIK--VVARSPSTYGNYVYTEVFLVS 428
            ++I++E++   L T+       +V+ D +  T II+  +    P+ Y    +  + +  
Sbjct: 329 RLSIIAESIRDGLATW---DNWKHVNCDKL--TTIIESSLNVLEPAEYRKM-FDRLSVFP 382

Query: 429 EDA-IPGTYIIKVVAR--SPSTYVYHMYLISDFSGYNL--------TYMIPAGVADDMFK 477
             A IP      +++           M +++    Y+L        T  IP+   +   K
Sbjct: 383 PSAHIP----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 478 IDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILD 524
           ++ E        +L R  VD YN+           +D+ ++    LD
Sbjct: 439 LENE-------YALHRSIVDHYNIPKT--------FDSDDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 67/423 (15%), Positives = 121/423 (28%), Gaps = 171/423 (40%)

Query: 29  FKKYLSNNEVC-PKQIFTSTP-----------NMVSRCKFKKYLSNNEIKEDVPIGFTVG 76
             KYL       P+++ T+ P           + ++     K+++ +++           
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT--------- 357

Query: 77  NVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVR 136
            ++ +             SL  L P ++   FD       L V         P       
Sbjct: 358 -IIES-------------SLNVLEPAEYRKMFD------RLSVF--------PP------ 383

Query: 137 ALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIW-NFTATDAD 195
                                   +            IP     L  S IW +   +D  
Sbjct: 384 ----------------------SAH------------IP--TILL--SLIWFDVIKSDVM 405

Query: 196 DGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYE-TLTSFILVVKVTDQAANISE 254
              N   +Y LV + P+ +  S+  +   L L   L+ E  L   I+         NI +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIV------DHYNIPK 457

Query: 255 RLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQ-DSGDNGRV 313
                        D +D  P    P      Y    + +G H   +  ++  +     R+
Sbjct: 458 TF-----------DSDDLIP----PYLDQYFY----SHIGHH---LKNIEHPERMTLFRM 495

Query: 314 TYVISGGNEDARF---HLDHDK-------GILSLARVISEY-DHQSKFRAVLNITASDHG 362
            ++      D RF    + HD         IL+  + +  Y  +         I  +D  
Sbjct: 496 VFL------DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY---------ICDND-- 538

Query: 363 IPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYT 422
             PK   LV  IL          FL P    N+       T ++++   +       ++ 
Sbjct: 539 --PKYERLVNAIL---------DFL-PKIEENLICS--KYTDLLRIALMAED---EAIFE 581

Query: 423 EVF 425
           E  
Sbjct: 582 EAH 584

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 28/123 (22%)

Query: 65  IKEDVPIGFTVGNV-------VSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSL 117
           + E+   G  VGN+       +    T  A        + S           +++ SG+L
Sbjct: 17  VLEETDRGSLVGNLAKDLGLSLRELITRGA-------QILSKGNKQL---LQLEQKSGNL 66

Query: 118 VVARQLDRET-C---PEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPR--WGENP 171
           ++  +LDRE  C       L  + L      +P    +  +I++ DVND+AP     E+ 
Sbjct: 67  LLKEKLDREELCGSTNPCILHFQVL----LKSP-VQFIQGEIQLQDVNDHAPEFMEDESG 121

Query: 172 LTI 174
            + 
Sbjct: 122 PSS 124

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 16/108 (14%)

Query: 176 VNEDTLVGSTIWNFTATDADDGSN-GELRYGLVRQYPEGN--HFSVDHLTGTLTLLQPLD 232
           V E+T  GS + N      D G +  EL     +   +GN     ++  +G L L + LD
Sbjct: 17  VLEETDRGSLVGNLAK---DLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLD 73

Query: 233 YETL----TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVF 276
            E L       IL  +V      + +     +   + ++D+ND+AP F
Sbjct: 74  REELCGSTNPCILHFQV------LLKSPVQFIQGEIQLQDVNDHAPEF 115

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Length = 103

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 30/112 (26%)

Query: 65  IKEDVPIGFTVGNV-------VSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSL 117
           I E+   G  VG +       ++               + S    D     +++  +G L
Sbjct: 9   IPEEAKHGTFVGRIAQDLGLELTELVPRLF-------RVASKDRGDL---LEVNLQNGIL 58

Query: 118 VVARQLDRET-CPE-----YKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDN 163
            V  ++DRE  C         LEV          P      +++E+ D+NDN
Sbjct: 59  FVNSRIDREELCGRSAECSIHLEVIV------DRP-LQVFHVEVEVRDINDN 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	570
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	99.98
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	99.97
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.96
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.95
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.91
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.9
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.87
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.86
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.79
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.79
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.75
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.72
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.68
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.67
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.61
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.61
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.61
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.6
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.59
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.57
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.57
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.57
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.54
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.52
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.52
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.51
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.28
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.18
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	94.82
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	93.44
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	92.85
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	92.43
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	91.41
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	90.83
2kpn_A	103	Bacillolysin; solution structure, BIG_3 domain, PF	88.76
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	88.08
2yrl_A	102	KIAA1837 protein; PKD domain, NPPSFA, national pro	82.83
2yrl_A	102	KIAA1837 protein; PKD domain, NPPSFA, national pro	81.15
2kpn_A	103	Bacillolysin; solution structure, BIG_3 domain, PF	80.75

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=3.3e-70  Score=592.09  Aligned_cols=439  Identities=27%  Similarity=0.396  Sum_probs=398.5

Q ss_pred             eeecCCCC--CCeEEEEEEEEcCCCCCCCceEEEEEEecCC-CCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEe
Q psy8639          63 NEIKEDVP--IGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALD  139 (570)
Q Consensus        63 ~~v~E~~~--~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~-~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D  139 (570)
                      ++|+||..  .++.|+++.+ |.|   .++.++|+|.+.+. .+..++|.|++.+|.|+++++||||+...|.|+|+|+|
T Consensus         7 ~~v~En~~~~~~~~v~~v~a-d~d---~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~a~d   82 (550)
T 3q2v_A            7 ISCPENEKGEFPKNLVQIKS-NRD---KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS   82 (550)
T ss_dssp             EEEETTCCSSSSEEEEECEE-GGG---GTSCEEEEEESBTTTBSSCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred             EEEeCCCCCCcCeEEEEEec-CCC---CCceEEEEEECCCCCCCCCceEEEeCCceEEEECCccCcccCCeeEEEEEEEe
Confidence            47999984  6899999999 777   46889999954221 23457999999999999999999999999999999999


Q ss_pred             CCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCC---CCceEEEEEEecCC---CC
Q psy8639         140 TSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG---SNGELRYGLVRQYP---EG  213 (570)
Q Consensus       140 ~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g---~~~~~~y~l~~~~~---~~  213 (570)
                      .+|  +..+.+..|+|+|.|+|||+|.|....|.+.|.|++++|+.++++.|+|+|.|   .|+.++|+|.++.+   ..
T Consensus        83 ~~~--~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~  160 (550)
T 3q2v_A           83 SNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK  160 (550)
T ss_dssp             TTS--CBCSCCEEEEEEEECCSCCCCCBSCSEEEEEEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSS
T ss_pred             CCC--CcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcC
Confidence            776  55777889999999999999999999999999999999999999999999988   78999999998754   35


Q ss_pred             CcEEEeCCCcEEEE-cccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCC
Q psy8639         214 NHFSVDHLTGTLTL-LQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTR  292 (570)
Q Consensus       214 ~~F~Id~~~G~i~~-~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~  292 (570)
                      ++|.|++.+|.|++ .++||||....|.|+|+|+|++++.   ++++++|.|+|.|+|||+|+|....  |.+.|.|+ +
T Consensus       161 ~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~---~s~t~~v~I~V~DvNDn~P~F~~~~--y~~~V~En-~  234 (550)
T 3q2v_A          161 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG---LSTTAKAVITVKDINDNAPVFNPST--YQGQVPEN-E  234 (550)
T ss_dssp             CSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTS---CCCEEEEEEEEECCSCSCCEESSSE--EEEEEESS-C
T ss_pred             CceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCC---eeEEEEEEEEecccCCCCCEEecce--eEEEEecC-C
Confidence            69999999999987 5789999999999999999987663   8899999999999999999998876  89999999 8


Q ss_pred             CCeEEEEEEEEeCCCCCCe--EEEEEEEeCCCCCcEEEe----cCCCEEEEEeecCcccccceeEEEEEEEEEECC---c
Q psy8639         293 VGSHVTKMTAVDQDSGDNG--RVTYVISGGNEDARFHLD----HDKGILSLARVISEYDHQSKFRAVLNITASDHG---I  363 (570)
Q Consensus       293 ~g~~v~~v~a~D~D~~~~~--~i~ysi~~~~~~~~F~id----~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g---~  363 (570)
                      .|+.++++.|+|+|.+.++  .++|+|.. +..++|.|+    ..+|.|++.+.||   ||....|.|+|.|+|++   .
T Consensus       235 ~g~~v~~v~a~D~D~~~n~~~~~~ysi~~-~~~~~F~i~~d~~~~tG~i~~~~~LD---~E~~~~y~l~V~a~D~~~~~~  310 (550)
T 3q2v_A          235 VNARIATLKVTDDDAPNTPAWKAVYTVVN-DPDQQFVVVTDPTTNDGILKTAKGLD---FEAKQQYILHVRVENEEPFEG  310 (550)
T ss_dssp             SSCCCEEECEECCSCTTSTTTCEEEEESS-CSSCCEEEEECTTTCCEEEEESSCCC---TTTCSEEEEEEEEEESSCCCS
T ss_pred             CCCEEEEEEEEECCCCCCCcEEEEEEEEe-CCCCcEEEEecCCCccEEEEecccCC---ccccceEEEEEEEEeCCCCCC
Confidence            9999999999999998876  46799988 578899998    6789999999999   99999999999999986   3


Q ss_pred             CCceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEee
Q psy8639         364 PPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR  443 (570)
Q Consensus       364 ~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  443 (570)
                      +.++++++|.|.|.|+|| +|.|....|...|.|++++|+.|+++.|+|+|.                            
T Consensus       311 ~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~----------------------------  361 (550)
T 3q2v_A          311 SLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDT----------------------------  361 (550)
T ss_dssp             SCCCEEEEEEEEEECCCC-CCEESSSSCEEEEETTCCSSCEEEECCEECCCC----------------------------
T ss_pred             CccceEEEEEEEEEecCC-CCeEcCcceEEEEecCCCCCCEEEEEeCCCCCC----------------------------
Confidence            457899999999999999 999999999999999999999999999999999                            


Q ss_pred             CCCceeEEEEEeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCcccc-----ceEEEEEEEEeCCC-CCeeEEE
Q psy8639         444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETV-----DQYNLVVHVTDSKS-GDYDTTN  517 (570)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~-----~~~~l~V~atD~~~-~~~~~~~  517 (570)
                                    +.++.++|+|.++ ..++|.|++.+|.|++.+.||||..     ..|.|+|.|+|++. +++++++
T Consensus       362 --------------g~n~~i~y~i~~~-~~~~f~id~~tG~i~~~~~lDrE~~~~~~~~~y~l~V~A~D~g~p~~s~~~~  426 (550)
T 3q2v_A          362 --------------FMDQKITYRIWRD-TANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGT  426 (550)
T ss_dssp             --------------STTCCCEEEEEEC-TTCCEEECTTTCEEEECSCCCTTCTTTCCSSEEEEEEEEECCSSSCCCEEEE
T ss_pred             --------------CCCCCEEEEEecC-CCCcEEEeCCCcEEEECCccCcccccccCCCEEEEEEEEEeCCCCcceeEEE
Confidence                          8899999999654 5689999999999999999999998     99999999999997 5889999


Q ss_pred             EEEEEEecCCCCcccccCCeeeEEecCCCCCCeEEEEEEEeCCCCCcce
Q psy8639         518 VFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSF  566 (570)
Q Consensus       518 v~I~V~dvNd~~P~f~~~~~~~~~v~E~~~~~~v~~i~a~D~D~~~~~~  566 (570)
                      |+|+|+|+|||+|.|.   .+...|+|+.+.+.+  ++|+|+|.+.|+-
T Consensus       427 v~I~V~DvNDn~P~~~---~~~~~v~e~~~~~~~--v~A~D~D~~~n~~  470 (550)
T 3q2v_A          427 LLLVLLDVNDNAPIPE---PRNMQFCQRNPQPHI--ITILDPDLPPNTS  470 (550)
T ss_dssp             EEEEEECCCCCCCEES---CSSCEEESSSCCCEE--EEEECCSCTTSSS
T ss_pred             EEEEEEeCCCCCCcCc---CcccceeecCCCcEE--EEEECCCCCCCCC
Confidence            9999999999999998   377889999988865  9999999999874

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=1.8e-70  Score=595.22  Aligned_cols=448  Identities=28%  Similarity=0.394  Sum_probs=397.8

Q ss_pred             eeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCC-CCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEeCC
Q psy8639          63 NEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTS  141 (570)
Q Consensus        63 ~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~-~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D~~  141 (570)
                      ++|+||.+ |+....+.+.+.|.+ .++.++|+|.+... ....++|.|++.+|.|++.++||||+...|.|+|+|+|.+
T Consensus         7 ~~v~En~~-g~~~~~i~~~~~D~~-~n~~i~Ysi~~~~~~~~~~~~F~id~~tG~l~~~~~LDrE~~~~y~l~v~a~D~g   84 (559)
T 3q2w_A            7 INLPENSR-GPFPQELVRIRSDRD-KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   84 (559)
T ss_dssp             EEEESSCC-CCSSEEEEECCCGGG-GTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred             EEeeCCCC-CCCCeEEEEEeeCCC-CCcEEEEEEECCCCCCCCCceEEEeCCceEEEECCccCCCCCceEEEEEEEEECC
Confidence            47999997 666666777777766 68899999954221 1234799999999999999999999999999999999976


Q ss_pred             CCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCC--CCceEEEEEEecCCC---CCcE
Q psy8639         142 TSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG--SNGELRYGLVRQYPE---GNHF  216 (570)
Q Consensus       142 g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g--~~~~~~y~l~~~~~~---~~~F  216 (570)
                      +  +.++.+..|+|+|.|+|||+|.|....|.+.|.|+++.|+.++++.|+|+|.|  .|+.++|+|.++.+.   .+.|
T Consensus        85 ~--~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F  162 (559)
T 3q2w_A           85 G--NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMF  162 (559)
T ss_dssp             S--CEEEEEEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCE
T ss_pred             C--CccceeEEEEEEEEeCCCCCCccCCCeeEEEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceE
Confidence            6  56888899999999999999999999999999999999999999999999976  689999999886542   2689


Q ss_pred             EEeCCCcEEEEcc-cCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCe
Q psy8639         217 SVDHLTGTLTLLQ-PLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGS  295 (570)
Q Consensus       217 ~Id~~~G~i~~~~-~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~  295 (570)
                      .|++.+|.|.+.+ .||||....|.|+|+|+|+++.+.+.++++++|.|+|.|+|||+|.|....  |.+.|.|+. +|+
T Consensus       163 ~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~~--y~~~V~En~-~g~  239 (559)
T 3q2w_A          163 TINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMT--FYGEVPENR-VDV  239 (559)
T ss_dssp             EECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEESSSE--EEEEEESSC-SSE
T ss_pred             EEeCCceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCcccccc--ceeEecCCC-CCc
Confidence            9999999999988 999999999999999999865332237899999999999999999998886  889999997 899


Q ss_pred             EEEEEEEEeCCCCC--CeEEEEEEEeCCCCCcEEE----ecCCCEEEEEeecCcccccceeEEEEEEEEEECC------c
Q psy8639         296 HVTKMTAVDQDSGD--NGRVTYVISGGNEDARFHL----DHDKGILSLARVISEYDHQSKFRAVLNITASDHG------I  363 (570)
Q Consensus       296 ~v~~v~a~D~D~~~--~~~i~ysi~~~~~~~~F~i----d~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g------~  363 (570)
                      .++++.|+|+|.+.  ++.++|+|..++..++|.|    +..+|.|++.++||   ||....|.|+|.|+|++      .
T Consensus       240 ~v~~v~a~D~D~~~~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~~~~LD---~E~~~~y~l~V~A~D~~~~~~g~~  316 (559)
T 3q2w_A          240 IVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPID---FETNRMFVLTVAAENQVPLAKGIQ  316 (559)
T ss_dssp             EEEEEEEECCSCTTSTTTSBCCEEEESCTTCCEEEEECTTTCEEEEEECSCCC---TTTCSEEEEEEECCBSSCCCTTCC
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecCCCCCceEEEecCCCCcEEEEeCCCCC---CccCceEEEEEEEEcCCccccCCC
Confidence            99999999999976  5689999999888899999    46789999999999   99999999999999964      3


Q ss_pred             CCceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEee
Q psy8639         364 PPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR  443 (570)
Q Consensus       364 ~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  443 (570)
                      |+++++++|+|.|.|+|| +|.|....|.+.|.|+.++|+.|+++.|+|+|.                            
T Consensus       317 ~~~~s~~~v~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~----------------------------  367 (559)
T 3q2w_A          317 HPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDR----------------------------  367 (559)
T ss_dssp             CCGGGEEEEEEEEECCCC-CCEESSSEEEEEEESCCCTTCEEEECCEECSCS----------------------------
T ss_pred             CCCceEEEEEEEEEeCCC-CCcccccceEEEEeCCCCCCCEEEEEEEECCCC----------------------------
Confidence            568899999999999999 699999999999999999999999999999999                            


Q ss_pred             CCCceeEEEEEeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCcccc----ceEEEEEEEEeCCC-CCeeEEEE
Q psy8639         444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETV----DQYNLVVHVTDSKS-GDYDTTNV  518 (570)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~----~~~~l~V~atD~~~-~~~~~~~v  518 (570)
                                    +.++.++|+|.++ ..++|+|++.+|.|++.+.||||..    ..|.|+|+|+|++. +++++++|
T Consensus       368 --------------g~n~~i~Ysi~~~-~~~~f~Id~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D~g~p~~ss~~~v  432 (559)
T 3q2w_A          368 --------------YMQQNIRYTKLSD-PANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTL  432 (559)
T ss_dssp             --------------SSCCCEEEEEEEC-TTCCEEECTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEECSSSCCEEEEEE
T ss_pred             --------------CCCCceEEEEccC-CccceEecCCceEEEEccccCcccccccCCEEEEEEEEEcCCCCcceEEEEE
Confidence                          8899999999865 4689999999999999999999986    99999999999997 58999999


Q ss_pred             EEEEEecCCCCcccccCCeeeEEecCCCCCCeEEEEEEEeCCCCCcc--eec
Q psy8639         519 FITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKS--FID  568 (570)
Q Consensus       519 ~I~V~dvNd~~P~f~~~~~~~~~v~E~~~~~~v~~i~a~D~D~~~~~--~~~  568 (570)
                      +|+|+|+|||+|.|. ..  ...++|+ +.+.+++++|+|+|.|.|+  +.|
T Consensus       433 ~I~V~DvNDn~P~f~-~~--~~~v~e~-~~~~v~~v~A~D~D~~~n~~~~~y  480 (559)
T 3q2w_A          433 QIYLLDINDNAPQVL-PQ--EAETCET-PEPNSINITALDYDIDPNAGPFAF  480 (559)
T ss_dssp             EEEEECCSCCCCEES-CT--TCCCCSC-CCTTCEEECEECSCCTTSSSSCEE
T ss_pred             EEEEEEccCCCCccc-CC--ceEEeec-CCCcEEEEEEEcCCCCCCCCCEEE
Confidence            999999999999998 44  3458888 4335679999999998887  444

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=1.3e-70  Score=594.21  Aligned_cols=446  Identities=28%  Similarity=0.430  Sum_probs=400.2

Q ss_pred             ccccccceeecCCCC--CCeEEEEEEEEcCCCCCCCceEEEEEEecCCC-CCCCceEEECcccEEEECCcCCCCCCCeEE
Q psy8639          56 FKKYLSNNEIKEDVP--IGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPT-DHSGAFDIDKSSGSLVVARQLDRETCPEYK  132 (570)
Q Consensus        56 f~~~~~~~~v~E~~~--~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~-~~~~~F~id~~~G~l~~~~~LD~E~~~~~~  132 (570)
                      ..+-.|.++|+||.+  .+..++++.+ |.|   .++.++|+|.+.... ...+.|.|++.+|.|+++++||||+...|.
T Consensus         6 ~~~~~~~~~v~En~~g~~~~~v~~~~~-d~d---~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~   81 (546)
T 1l3w_A            6 HDWVIPPIKVSENERGPFPKRLVQIKS-NKD---RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYV   81 (546)
T ss_dssp             -CCCCCCEEEESSCCSSSCEEEEECCC-SGG---GSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE
T ss_pred             CCcccceeEecCCCCCCCCcEEEEEEc-CCC---CCceEEEEEECCCCCCCCCceEEEeCCccEEEECCcCCcccCceEE
Confidence            445567889999997  3455777764 555   578999999543211 235789999999999999999999999999


Q ss_pred             EEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCC---CCceEEEEEEec
Q psy8639         133 LEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG---SNGELRYGLVRQ  209 (570)
Q Consensus       133 l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g---~~~~~~y~l~~~  209 (570)
                      |+|+|+|.++  +.++.+..|+|.|.|+|||+|.|....|.+.|.|++++|+.++++.|+|+|.|   .|+.++|+|..+
T Consensus        82 l~v~A~D~~~--~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~  159 (546)
T 1l3w_A           82 LSSHAVSENG--SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ  159 (546)
T ss_dssp             EEEEEEESSS--CBCSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEE
T ss_pred             EEEEEEeCCC--CcccceEEEEEEEEecccCcCEecCceeEEEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCC
Confidence            9999999776  56778889999999999999999999999999999999999999999999988   689999999987


Q ss_pred             CC---CCCcEEEeCCCcEEEEc-ccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeE
Q psy8639         210 YP---EGNHFSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLI  285 (570)
Q Consensus       210 ~~---~~~~F~Id~~~G~i~~~-~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~  285 (570)
                      .+   ..++|.|++.+|.|++. ++||||....|.|+|+|+|++++.   ++++++|.|+|.|+|||+|.|....  |.+
T Consensus       160 ~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~---~s~~~~v~I~V~DvNDn~P~F~~~~--y~~  234 (546)
T 1l3w_A          160 DPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG---LSVEGKAIIQITDANDNAPIFDPKT--YTA  234 (546)
T ss_dssp             SSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTS---CEEECCEEEEEECCCCCCCCBSCSE--EEE
T ss_pred             CCCcccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCC---cceEEEEEEEEeecCCCCCcccccc--ceE
Confidence            64   35799999999999985 789999999999999999998753   7899999999999999999998876  889


Q ss_pred             EEeccCCCCeEEEEEEEEeCC--CCCCeEEEEEEEeCCCCCcEEEe----cCCCEEEEEeecCcccccceeEEEEEEEEE
Q psy8639         286 YVSEQTRVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDARFHLD----HDKGILSLARVISEYDHQSKFRAVLNITAS  359 (570)
Q Consensus       286 ~v~E~~~~g~~v~~v~a~D~D--~~~~~~i~ysi~~~~~~~~F~id----~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~  359 (570)
                      .|.|+ +.|+.++++.|+|+|  .+.++.++|+|.. +..++|.|+    ..+|.|++.+.||   ||....|.|+|+|+
T Consensus       235 ~V~En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~-~~~~~F~I~~d~~~~~G~i~~~~~LD---~E~~~~y~l~V~a~  309 (546)
T 1l3w_A          235 LVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV-NEGGFFNITTDPESNQGILTTAKGLD---FELRKQYVLQITVE  309 (546)
T ss_dssp             EEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSC-CTTSCEEEEECTTTCCEEEEESSCCC---CSSCCCEEEEECCE
T ss_pred             EEEeC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEe-CCCceEEEEecCCCCeEEEEECccCC---cccccEEEEEEEEE
Confidence            99999 999999999999999  7789999999998 678899996    2579999999999   99999999999999


Q ss_pred             ECC---cCCceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceE
Q psy8639         360 DHG---IPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTY  436 (570)
Q Consensus       360 D~g---~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~  436 (570)
                      |++   .|.++++++|.|.|.|+|| +|.|....|.+.|.|+.++|+.|+++.|+|+|.                     
T Consensus       310 D~~~~~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D~---------------------  367 (546)
T 1l3w_A          310 NAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDK---------------------  367 (546)
T ss_dssp             ESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCT---------------------
T ss_pred             ECCCCCCCCcceeEEEEEEEEcCCC-CCcEecceEEEEEeCCCCCCCEEEEEEEECCCC---------------------
Confidence            976   3567899999999999999 999999999999999999999999999999999                     


Q ss_pred             EEEEEeeCCCceeEEEEEeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCcccc----ceEEEEEEEEeCCC-C
Q psy8639         437 IIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETV----DQYNLVVHVTDSKS-G  511 (570)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~----~~~~l~V~atD~~~-~  511 (570)
                                           +.++.++|+|..+ ..++|.|++.+|.|++.+.||||..    ..|.|+|+|+|++. +
T Consensus       368 ---------------------g~n~~i~ysi~~~-~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~g~p~  425 (546)
T 1l3w_A          368 ---------------------QQIQKLSYFIGND-PARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV  425 (546)
T ss_dssp             ---------------------TCCCCEEEEECCC-SSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSC
T ss_pred             ---------------------CCCceEEEEECCC-CCCcEEEeCCcEEEEECCccCCccccCCCCEEEEEEEEEECCCCC
Confidence                                 8899999999765 4689999999999999999999997    89999999999987 6


Q ss_pred             CeeEEEEEEEEEecCCCCcccccCCeeeEEecCCCCCCeEEEEEEEeCCCCCcce
Q psy8639         512 DYDTTNVFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSF  566 (570)
Q Consensus       512 ~~~~~~v~I~V~dvNd~~P~f~~~~~~~~~v~E~~~~~~v~~i~a~D~D~~~~~~  566 (570)
                      ++++++|+|+|+|+|||+|.|. .  +...|+|+.+.|.+  +.|+|+|.+.|+.
T Consensus       426 ~s~~~~v~I~V~DvNDn~P~f~-~--~~~~v~e~~~~g~v--v~A~D~D~~~n~~  475 (546)
T 1l3w_A          426 GTGTGTLILHVLDVNDNGPVPS-P--RVFTMCDQNPEPQV--LTISDADIPPNTY  475 (546)
T ss_dssp             CCCCEEEECCBCCCCCSCCCBS-C--CCEEECSSSCCCEE--EEBCCSSCTTTTC
T ss_pred             cEeEEEEEEEEEECCCCcCCcc-C--ceEEEecCCCCCeE--EEEEeCCCCCCCc
Confidence            8899999999999999999998 3  37889999999975  9999999999873

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=4e-69  Score=609.09  Aligned_cols=440  Identities=28%  Similarity=0.436  Sum_probs=398.0

Q ss_pred             ceeecCCCC--CCeEEEEEEEEcCCCCCCCceEEEEEEecCCC-CCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEE
Q psy8639          62 NNEIKEDVP--IGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPT-DHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRAL  138 (570)
Q Consensus        62 ~~~v~E~~~--~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~-~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~  138 (570)
                      .++|+||.+  .+..++++.+ |.|   .++.++|+|.+.... ...+.|.|++.+|.|+++++||||+...|.|+|+|+
T Consensus       161 ~~~v~En~~~~~~~~v~~v~~-d~d---~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~  236 (880)
T 1q55_A          161 PIKVSENERGPFPKRLVQIKS-NKD---RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV  236 (880)
T ss_dssp             CEEEESSCCSSSCEEEEECCC-SGG---GSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred             ceEEeCCCCCCCCeEEEEEee-CCC---CCceEEEEEECCCCCCCcCCEEEEECCcCEEEECCccCccccCccEEEEEEE
Confidence            679999997  5778888765 444   478999999653211 235789999999999999999999999999999999


Q ss_pred             eCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCC---CCceEEEEEEecCC---C
Q psy8639         139 DTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG---SNGELRYGLVRQYP---E  212 (570)
Q Consensus       139 D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g---~~~~~~y~l~~~~~---~  212 (570)
                      |.++  +..+.+..|+|+|.|+|||+|+|....|.+.|.|++++|+.++++.|+|+|.|   .|+.++|+|.++.+   .
T Consensus       237 D~g~--~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~  314 (880)
T 1q55_A          237 SENG--SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPI  314 (880)
T ss_dssp             ESSS--CBCSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSC
T ss_pred             ECCC--CceeeeEEEEEEEEecCCCCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCccc
Confidence            9766  56778899999999999999999999999999999999999999999999988   68999999998764   3


Q ss_pred             CCcEEEeCCCcEEEEc-ccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccC
Q psy8639         213 GNHFSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQT  291 (570)
Q Consensus       213 ~~~F~Id~~~G~i~~~-~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~  291 (570)
                      .+.|.|++.+|.|++. +.||||....|.|+|+|+|.+++.   ++++++|.|+|.|+|||+|+|....  |.+.|.|+ 
T Consensus       315 ~~~F~Id~~tG~I~~~~~~LDrE~~~~y~l~V~A~D~g~~~---~s~~~~v~I~V~DvNDn~P~F~~~~--y~~~V~En-  388 (880)
T 1q55_A          315 PNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG---LSVEGKAIIQITDANDNAPIFDPKT--YTALVPEN-  388 (880)
T ss_dssp             SCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTS---CEEECCEEEEEECCCCCCCCBSCSE--EEEEEESS-
T ss_pred             CCeEEEccCCccEEEecccCCHHHcceeEEEEEEEECCCCC---ccceeEEEEEEEeccCCCCCccccc--eEEEeecC-
Confidence            5799999999999985 789999999999999999998753   7899999999999999999998876  88999999 


Q ss_pred             CCCeEEEEEEEEeCC--CCCCeEEEEEEEeCCCCCcEEEe--c--CCCEEEEEeecCcccccceeEEEEEEEEEECC---
Q psy8639         292 RVGSHVTKMTAVDQD--SGDNGRVTYVISGGNEDARFHLD--H--DKGILSLARVISEYDHQSKFRAVLNITASDHG---  362 (570)
Q Consensus       292 ~~g~~v~~v~a~D~D--~~~~~~i~ysi~~~~~~~~F~id--~--~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g---  362 (570)
                      ++|+.++++.|+|+|  .+.|+.++|+|.. +..++|.|+  +  .+|.|++.+.||   ||....|.|+|+|+|++   
T Consensus       389 ~~gt~V~~v~A~D~D~~~g~n~~v~Ysi~~-~~~~~F~I~~d~~~~~G~i~~~~~LD---~E~~~~y~l~V~A~D~~~~~  464 (880)
T 1q55_A          389 EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV-NEGGFFNITTDPESNQGILTTAKGLD---FELRKQYVLQITVENAEPFS  464 (880)
T ss_dssp             SCCCEEEEECBCCCSCTTSTTSCEECCBSC-CTTSCEEEEECTTTCCEEEEESSCCC---CSSCCCEEEEECCEESSCCS
T ss_pred             CCCcEEEEEEEECCCCCCCCCceEEEEEec-CCCceEEEEecCCCceEEEecccCCC---cccCCcEEEEEEEEECCCCC
Confidence            999999999999999  6788999999998 678899995  2  579999999999   99999999999999976   


Q ss_pred             cCCceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEe
Q psy8639         363 IPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVA  442 (570)
Q Consensus       363 ~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~  442 (570)
                      .|.++++++|+|+|.|+|| +|.|....|.+.|.|+.++|+.|+++.|+|+|.                           
T Consensus       465 ~~~~sst~tV~I~V~DvND-~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~---------------------------  516 (880)
T 1q55_A          465 VPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDK---------------------------  516 (880)
T ss_dssp             SCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCT---------------------------
T ss_pred             CCCcceeEEEEEEEEeCCC-CCEEecCceEEEEeCCCCCCCEEEEEEEEeCCC---------------------------
Confidence            3467899999999999999 999999999999999999999999999999999                           


Q ss_pred             eCCCceeEEEEEeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCcccc----ceEEEEEEEEeCCC-CCeeEEE
Q psy8639         443 RSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETV----DQYNLVVHVTDSKS-GDYDTTN  517 (570)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~----~~~~l~V~atD~~~-~~~~~~~  517 (570)
                                     +.++.++|+|..+ ..++|.|++.+|.|++.+.||||..    ..|.|+|.|+|++. +++++++
T Consensus       517 ---------------g~n~~v~Ysi~~~-~~~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D~g~p~~sst~t  580 (880)
T 1q55_A          517 ---------------QQIQKLSYFIGND-PARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGT  580 (880)
T ss_dssp             ---------------TCCCCEEEEECCC-SSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEE
T ss_pred             ---------------CCCCcEEEEECCC-CCCCEEEeCCccEEEECCccCcccccCCCCEEEEEEEEEECCCCCcEeEEE
Confidence                           8899999999765 4689999999999999999999997    89999999999987 6889999


Q ss_pred             EEEEEEecCCCCcccccCCeeeEEecCCCCCCeEEEEEEEeCCCCCcce
Q psy8639         518 VFITILDVNDNAPEFKSGSCYPITIPENSEAANVHTFIATDFGNFHKSF  566 (570)
Q Consensus       518 v~I~V~dvNd~~P~f~~~~~~~~~v~E~~~~~~v~~i~a~D~D~~~~~~  566 (570)
                      |+|+|.|+|||+|.|. .  ....|+|+.+.|.+  +.|+|+|.+.|+.
T Consensus       581 v~I~V~DvNDn~P~f~-~--~~~~v~E~~~~g~v--v~A~D~D~~~n~~  624 (880)
T 1q55_A          581 LILHVLDVNDNGPVPS-P--RVFTMCDQNPEPQV--LTISDADIPPNTY  624 (880)
T ss_dssp             EECCBCCCCCSCCCBS-C--CCEEECSSSCCCEE--EEBCCSSCTTTTC
T ss_pred             EEEEEEeCCCCCCCcc-C--cceEEecCCCCCeE--EEEecCCCCCCCc
Confidence            9999999999999998 3  37889999999965  9999999999874

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=2.4e-66  Score=562.89  Aligned_cols=460  Identities=22%  Similarity=0.309  Sum_probs=387.3

Q ss_pred             eeeeeeeccCceEEeCC---------------------CceeEEEEE-EEEEccCCCCcEEEEecCCCcccccccccccc
Q psy8639           5 CKFKKYLSNNEIFTSTP---------------------NMVSRCKFK-KYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSN   62 (570)
Q Consensus         5 ~~~~~~~~~~~~~~~~p---------------------~~~~~~~~~-~v~d~nd~~p~~~~~~~~~~~~~p~f~~~~~~   62 (570)
                      ..|.|+.++|+|++..+                     .+++.+.+. .|+|+|||+|              .|.+..|.
T Consensus        49 ~~F~id~~tG~l~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P--------------~F~~~~y~  114 (559)
T 3q2w_A           49 GIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP--------------EFLHQVWN  114 (559)
T ss_dssp             TSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCEEEEEEEEEEEEECCCCCCC--------------EESCSEEE
T ss_pred             ceEEEeCCceEEEECCccCCCCCceEEEEEEEEECCCCccceeEEEEEEEEeCCCCCC--------------ccCCCeeE
Confidence            35777777777766554                     233445554 7777777777              58888999


Q ss_pred             eeecCCCCCCeEEEEEEEEcCCCCC-CCceEEEEEEecCCC-CCCCceEEECcccEEEECC-cCCCCCCCeEEEEEEEEe
Q psy8639          63 NEIKEDVPIGFTVGNVVSTDSTGRA-GGGHVMYSLTSLSPT-DHSGAFDIDKSSGSLVVAR-QLDRETCPEYKLEVRALD  139 (570)
Q Consensus        63 ~~v~E~~~~gt~v~~l~a~D~D~~~-~~~~~~ysi~~~~~~-~~~~~F~id~~~G~l~~~~-~LD~E~~~~~~l~v~a~D  139 (570)
                      ++|+|++++|+.|+++.|+|+|.+. .|+.++|+|.+..+. ...+.|.|++.+|.|++.+ .||||....|.|+|+|+|
T Consensus       115 ~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D  194 (559)
T 3q2w_A          115 GSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD  194 (559)
T ss_dssp             EEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEH
T ss_pred             EEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEE
Confidence            9999999999999999999999762 478999999543221 1237899999999999887 999999999999999999


Q ss_pred             CCCCC-CCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCC--CceEEEEEEecCCCCCcE
Q psy8639         140 TSTSS-NPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS--NGELRYGLVRQYPEGNHF  216 (570)
Q Consensus       140 ~~g~~-~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~--~~~~~y~l~~~~~~~~~F  216 (570)
                      ++|.+ +.+++++.|+|+|.|+|||+|.|....|.+.|.|+. +|+.++++.|+|+|.+.  ++.++|+|..+.+ .+.|
T Consensus       195 ~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~~-~~~F  272 (559)
T 3q2w_A          195 MEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDP-TGRF  272 (559)
T ss_dssp             HHHCTTTCCEEEEEEEEEEECCSCSCCEESSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEESCT-TCCE
T ss_pred             CCCCCCCCccceEEEEEEEEeCCCCCCccccccceeEecCCC-CCcEEEEEEEEcCCCCCCCceeEEEEEecCCC-CCce
Confidence            75532 358999999999999999999999999999999997 89999999999999875  6689999988754 6799


Q ss_pred             EE----eCCCcEEEEcccCCccCcceEEEEEEEEECCCCC---CCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEec
Q psy8639         217 SV----DHLTGTLTLLQPLDYETLTSFILVVKVTDQAANI---SERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSE  289 (570)
Q Consensus       217 ~I----d~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~---~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E  289 (570)
                      .|    +..+|.|++.++||||....|.|+|.|+|+++..   .+.++++++|.|+|.|+|| +|.|....  |.+.|.|
T Consensus       273 ~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~--~~~~v~E  349 (559)
T 3q2w_A          273 AILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNP--KIIRQEE  349 (559)
T ss_dssp             EEEECTTTCEEEEEECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSE--EEEEEES
T ss_pred             EEEecCCCCcEEEEeCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCCC-CCcccccc--eEEEEeC
Confidence            99    4678999999999999999999999999985421   1237899999999999999 79998776  7899999


Q ss_pred             cCCCCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccce----eEEEEEEEEEECCcCC
Q psy8639         290 QTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSK----FRAVLNITASDHGIPP  365 (570)
Q Consensus       290 ~~~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~----~~~~l~V~a~D~g~~~  365 (570)
                      +.+.|+.++++.|+|+|.+.++.++|+|..+ ..++|.|++.+|.|++.+.||   ||..    ..|.|+|.|+|+|.|+
T Consensus       350 n~~~g~~v~~v~A~D~D~g~n~~i~Ysi~~~-~~~~f~Id~~tG~i~~~~~lD---rE~~~~~~~~y~l~V~A~D~g~p~  425 (559)
T 3q2w_A          350 GLHAGTMLTTLTAQDPDRYMQQNIRYTKLSD-PANWLKIDPVNGQITTIAVLD---RESPNVKNNIYNATFLASDNGIPP  425 (559)
T ss_dssp             CCCTTCEEEECCEECSCSSSCCCEEEEEEEC-TTCCEEECTTTCEEEESSCCC---SSSTTSCSSEEEEEEEEEECSSSC
T ss_pred             CCCCCCEEEEEEEECCCCCCCCceEEEEccC-CccceEecCCceEEEEccccC---cccccccCCEEEEEEEEEcCCCCc
Confidence            9999999999999999999999999999975 678999999999999999999   8875    8999999999999999


Q ss_pred             ceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCC
Q psy8639         366 KSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSP  445 (570)
Q Consensus       366 ~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  445 (570)
                      ++++++|+|.|.|+|||+|.|....  ..++|+  .+..+++|.|+|+|.                              
T Consensus       426 ~ss~~~v~I~V~DvNDn~P~f~~~~--~~v~e~--~~~~v~~v~A~D~D~------------------------------  471 (559)
T 3q2w_A          426 MSGTGTLQIYLLDINDNAPQVLPQE--AETCET--PEPNSINITALDYDI------------------------------  471 (559)
T ss_dssp             CEEEEEEEEEEECCSCCCCEESCTT--CCCCSC--CCTTCEEECEECSCC------------------------------
T ss_pred             ceEEEEEEEEEEEccCCCCcccCCc--eEEeec--CCCcEEEEEEEcCCC------------------------------
Confidence            9999999999999999999998654  467888  455578999999999                              


Q ss_pred             CceeEEEEEeecCCCc-eEEEEecCCC--CCCcEEEeCCCcEEEEc-ccCCccccceEEEEEEEEeCCC-CCeeEEEEEE
Q psy8639         446 STYVYHMYLISDFSGY-NLTYMIPAGV--ADDMFKIDAETGVVTLA-RSLDRETVDQYNLVVHVTDSKS-GDYDTTNVFI  520 (570)
Q Consensus       446 ~~~~~~~~~~~~~~~~-~~~y~i~~~~--~~~~F~Id~~tG~i~~~-~~lD~E~~~~~~l~V~atD~~~-~~~~~~~v~I  520 (570)
                                  +.++ .++|+|....  ..+.|+|+..+|.+.+. ..++++....|.|.|+|+|+++ +++++++|+|
T Consensus       472 ------------~~n~~~~~ysl~~~~~~~~~~f~i~~~~G~~~~~~~~~~~~~~~~~~l~V~~~D~g~P~lsst~tv~V  539 (559)
T 3q2w_A          472 ------------DPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRV  539 (559)
T ss_dssp             ------------TTSSSSCEEECCSSSHHHHHHEEEEECSSSCEEEEECSCC-CCEEEEEEEEEECSSSSCCEEEEEEEE
T ss_pred             ------------CCCCCCEEEEEcCCCCccCCCeEEEecCCCEEEEEeccCcccCcEEEEEEEEEECCCCccceeEEEEE
Confidence                        7776 7999997542  35789999999987554 4789999999999999999998 5899999999


Q ss_pred             EEEecCCCCcccc
Q psy8639         521 TILDVNDNAPEFK  533 (570)
Q Consensus       521 ~V~dvNd~~P~f~  533 (570)
                      .|+||||+...+.
T Consensus       540 ~V~d~n~~~~~~~  552 (559)
T 3q2w_A          540 KVCQCDSNGDCTD  552 (559)
T ss_dssp             EEC----------
T ss_pred             EEEeCCCCCcccc
Confidence            9999999776665

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=1.5e-66  Score=563.41  Aligned_cols=453  Identities=20%  Similarity=0.292  Sum_probs=384.8

Q ss_pred             eeeeeeccCceEEeCCC---------------------ceeEEEEE-EEEEccCCCCcEEEEecCCCcccccccccccce
Q psy8639           6 KFKKYLSNNEIFTSTPN---------------------MVSRCKFK-KYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNN   63 (570)
Q Consensus         6 ~~~~~~~~~~~~~~~p~---------------------~~~~~~~~-~v~d~nd~~p~~~~~~~~~~~~~p~f~~~~~~~   63 (570)
                      .|.|+..+|+|++..+-                     +++.+.+. .|+|+|||+|              .|.+..|.+
T Consensus        50 ~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~a~d~~~~~~~~~~~v~I~V~DvNDn~P--------------~F~~~~y~~  115 (550)
T 3q2v_A           50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP--------------EFTQEVFEG  115 (550)
T ss_dssp             SEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCC--------------CBSCSEEEE
T ss_pred             eEEEeCCceEEEECCccCcccCCeeEEEEEEEeCCCCcccceEEEEEEEEecCCCCC--------------ccCCCceEE
Confidence            57787777777765543                     22333443 6666666666              688999999


Q ss_pred             eecCCCCCCeEEEEEEEEcCCCCC--CCceEEEEEEecCCC-CCCCceEEECcccEEEE-CCcCCCCCCCeEEEEEEEEe
Q psy8639          64 EIKEDVPIGFTVGNVVSTDSTGRA--GGGHVMYSLTSLSPT-DHSGAFDIDKSSGSLVV-ARQLDRETCPEYKLEVRALD  139 (570)
Q Consensus        64 ~v~E~~~~gt~v~~l~a~D~D~~~--~~~~~~ysi~~~~~~-~~~~~F~id~~~G~l~~-~~~LD~E~~~~~~l~v~a~D  139 (570)
                      +|+|++++|+.++++.|+|+|.+.  .|+.++|+|.+..+. ...+.|.|++.+|.|++ .++||||....|.|+|+|+|
T Consensus       116 ~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D  195 (550)
T 3q2v_A          116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD  195 (550)
T ss_dssp             EEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEES
T ss_pred             EEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEc
Confidence            999999999999999999999761  478999999543221 24679999999999987 57999999999999999999


Q ss_pred             CCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCc--eEEEEEEecCCCCCcEE
Q psy8639         140 TSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNG--ELRYGLVRQYPEGNHFS  217 (570)
Q Consensus       140 ~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~--~~~y~l~~~~~~~~~F~  217 (570)
                      .++  +.+++++.|+|+|.|+|||+|+|....|.+.|.|+ +.|+.++++.|+|+|.+.++  .++|+|..  ...+.|.
T Consensus       196 ~g~--~~~s~t~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~--~~~~~F~  270 (550)
T 3q2v_A          196 LQG--EGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVN--DPDQQFV  270 (550)
T ss_dssp             GGG--TSCCCEEEEEEEEECCSCSCCEESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTTTCEEEEESS--CSSCCEE
T ss_pred             CCC--CCeeEEEEEEEEecccCCCCCEEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCcEEEEEEEEe--CCCCcEE
Confidence            766  57899999999999999999999999999999999 89999999999999988776  46799987  3468999


Q ss_pred             Ee----CCCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCC
Q psy8639         218 VD----HLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRV  293 (570)
Q Consensus       218 Id----~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~  293 (570)
                      |+    ..+|.|++.++||||....|.|+|.|+|+++...+.++++++|.|+|.|+|| +|.|....  |.+.|.|++++
T Consensus       271 i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~--~~~~v~E~~~~  347 (550)
T 3q2v_A          271 VVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAE--RRVEVPEDFGV  347 (550)
T ss_dssp             EEECTTTCCEEEEESSCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEECCCC-CCEESSSS--CEEEEETTCCS
T ss_pred             EEecCCCccEEEEecccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEEecCC-CCeEcCcc--eEEEEecCCCC
Confidence            98    6789999999999999999999999999875433347889999999999999 99998876  78999999999


Q ss_pred             CeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccce-----eEEEEEEEEEECCcCCcee
Q psy8639         294 GSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSK-----FRAVLNITASDHGIPPKSS  368 (570)
Q Consensus       294 g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~-----~~~~l~V~a~D~g~~~~s~  368 (570)
                      |+.++++.|+|+|.|.++.++|+|... ..++|.|++.+|.|++.+.||   ||..     ..|.|+|.|+|+|.|++++
T Consensus       348 gt~v~~v~A~D~D~g~n~~i~y~i~~~-~~~~f~id~~tG~i~~~~~lD---rE~~~~~~~~~y~l~V~A~D~g~p~~s~  423 (550)
T 3q2v_A          348 GQEITSYTAREPDTFMDQKITYRIWRD-TANWLEINPETGAIFTRAEMD---REDAEHVKNSTYVALIIATDDGSPIATG  423 (550)
T ss_dssp             SCEEEECCEECCCCSTTCCCEEEEEEC-TTCCEEECTTTCEEEECSCCC---TTCTTTCCSSEEEEEEEEECCSSSCCCE
T ss_pred             CCEEEEEeCCCCCCCCCCCEEEEEecC-CCCcEEEeCCCcEEEECCccC---cccccccCCCEEEEEEEEEeCCCCccee
Confidence            999999999999999999999999765 678999999999999999999   9987     9999999999999999999


Q ss_pred             EEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCce
Q psy8639         369 SLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTY  448 (570)
Q Consensus       369 ~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  448 (570)
                      +++|.|.|.|+|||+|.|..  +...++|+.+.|..   |.|+|+|.                                 
T Consensus       424 ~~~v~I~V~DvNDn~P~~~~--~~~~v~e~~~~~~~---v~A~D~D~---------------------------------  465 (550)
T 3q2v_A          424 TGTLLLVLLDVNDNAPIPEP--RNMQFCQRNPQPHI---ITILDPDL---------------------------------  465 (550)
T ss_dssp             EEEEEEEEECCCCCCCEESC--SSCEEESSSCCCEE---EEEECCSC---------------------------------
T ss_pred             EEEEEEEEEeCCCCCCcCcC--cccceeecCCCcEE---EEEECCCC---------------------------------
Confidence            99999999999999999984  56789999988854   89999999                                 


Q ss_pred             eEEEEEeecCCCc-eEEEEecCCCCCCcEEEe--CCCcEEEEcccCCccccceEEEEEEEEeCCCCCeeEEEEEEEEEec
Q psy8639         449 VYHMYLISDFSGY-NLTYMIPAGVADDMFKID--AETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDV  525 (570)
Q Consensus       449 ~~~~~~~~~~~~~-~~~y~i~~~~~~~~F~Id--~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~~~~~~~~v~I~V~dv  525 (570)
                               +.++ .++|++..+.. ..|.+.  ..+|.+...+.+++|..+.|.|.|+|+|+++ +++..+|+|.|+|+
T Consensus       466 ---------~~n~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~y~l~V~a~D~g~-lss~~tv~V~V~d~  534 (550)
T 3q2v_A          466 ---------PPNTSPFTAELTHGAS-VNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQN-KDQVTTLDVHVCDC  534 (550)
T ss_dssp             ---------TTSSSSCCCEEEECCS-SSCEEECCSTTSSEEEEECSCC----CEECEEECCSSSC-CCCBCCCEEEEECC
T ss_pred             ---------CCCCCCEEEEECCCCC-CCeEEEEecCCCcEEEEEecccCCCceEEEEEEEEECCc-ceeEEEEEEEEEEe
Confidence                     6666 58888877643 355554  4448888888899999999999999999995 88999999999999


Q ss_pred             CCCCcccc
Q psy8639         526 NDNAPEFK  533 (570)
Q Consensus       526 Nd~~P~f~  533 (570)
                      |||+|.+.
T Consensus       535 ndn~~~~~  542 (550)
T 3q2v_A          535 EGTVNNCM  542 (550)
T ss_dssp             CC------
T ss_pred             cCCCcchh
Confidence            99999987

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=1.1e-66  Score=563.49  Aligned_cols=450  Identities=22%  Similarity=0.303  Sum_probs=389.5

Q ss_pred             eeeeeeccCceEEeCCC---------------------ceeEEEEE-EEEEccCCCCcEEEEecCCCcccccccccccce
Q psy8639           6 KFKKYLSNNEIFTSTPN---------------------MVSRCKFK-KYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNN   63 (570)
Q Consensus         6 ~~~~~~~~~~~~~~~p~---------------------~~~~~~~~-~v~d~nd~~p~~~~~~~~~~~~~p~f~~~~~~~   63 (570)
                      .|.|+..+|+|++..+-                     +++.+.+. .|+|+|||+|              .|.+..|.+
T Consensus        56 ~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D~~~~~~~~~~~v~I~V~DvNDn~P--------------~F~~~~y~~  121 (546)
T 1l3w_A           56 VFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRP--------------KFTQDVFRG  121 (546)
T ss_dssp             SEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCC--------------EESSSCEEE
T ss_pred             eEEEeCCccEEEECCcCCcccCceEEEEEEEEeCCCCcccceEEEEEEEEecccCcC--------------EecCceeEE
Confidence            58888777877665432                     33334443 6666666666              688889999


Q ss_pred             eecCCCCCCeEEEEEEEEcCCCCC--CCceEEEEEEecCCC-CCCCceEEECcccEEEEC-CcCCCCCCCeEEEEEEEEe
Q psy8639          64 EIKEDVPIGFTVGNVVSTDSTGRA--GGGHVMYSLTSLSPT-DHSGAFDIDKSSGSLVVA-RQLDRETCPEYKLEVRALD  139 (570)
Q Consensus        64 ~v~E~~~~gt~v~~l~a~D~D~~~--~~~~~~ysi~~~~~~-~~~~~F~id~~~G~l~~~-~~LD~E~~~~~~l~v~a~D  139 (570)
                      +|+|++++|+.|+++.|+|+|.+.  .|+.++|+|.+..+. ...+.|.|++.+|.|++. ++||||....|.|+|+|+|
T Consensus       122 ~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D  201 (546)
T 1l3w_A          122 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD  201 (546)
T ss_dssp             EEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEH
T ss_pred             EEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEE
Confidence            999999999999999999999761  478999999543221 145899999999999985 7999999999999999999


Q ss_pred             CCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCC--CCCCceEEEEEEecCCCCCcEE
Q psy8639         140 TSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDAD--DGSNGELRYGLVRQYPEGNHFS  217 (570)
Q Consensus       140 ~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D--~g~~~~~~y~l~~~~~~~~~F~  217 (570)
                      .++  +++++++.|+|+|.|+|||+|+|....|.+.|.|+ +.|+.++++.|+|+|  .|.|+.++|+|..  ...+.|.
T Consensus       202 ~g~--~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~--~~~~~F~  276 (546)
T 1l3w_A          202 LEG--AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV--NEGGFFN  276 (546)
T ss_dssp             HHH--TSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSC--CTTSCEE
T ss_pred             CCC--CCcceEEEEEEEEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEe--CCCceEE
Confidence            766  57899999999999999999999999999999999 999999999999999  7889999999987  3467999


Q ss_pred             Ee--C--CCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCC
Q psy8639         218 VD--H--LTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRV  293 (570)
Q Consensus       218 Id--~--~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~  293 (570)
                      |+  +  .+|.|++.++||||....|.|+|.|+|+++...+.++++++|.|+|.|+|| +|.|....  |.+.|.|+.++
T Consensus       277 I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~DvND-~P~f~~~~--y~~~V~En~~~  353 (546)
T 1l3w_A          277 ITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAV--SRVDVSEDLSR  353 (546)
T ss_dssp             EEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCE--ECCCBCTTCCS
T ss_pred             EEecCCCCeEEEEECccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEcCCC-CCcEecce--EEEEEeCCCCC
Confidence            96  2  579999999999999999999999999875433337889999999999999 99998776  78999999999


Q ss_pred             CeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccce----eEEEEEEEEEECCcCCceeE
Q psy8639         294 GSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSK----FRAVLNITASDHGIPPKSSS  369 (570)
Q Consensus       294 g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~----~~~~l~V~a~D~g~~~~s~~  369 (570)
                      |+.++++.|+|+|.|.++.++|+|..+ ..++|.|++.+|.|++.+.||   ||..    ..|.|+|.|+|+|.|+++++
T Consensus       354 g~~v~~v~A~D~D~g~n~~i~ysi~~~-~~~~F~Id~~tG~i~~~~~lD---~E~~~~~~~~y~l~V~a~D~g~p~~s~~  429 (546)
T 1l3w_A          354 GEKIISLVAQDPDKQQIQKLSYFIGND-PARWLTVNKDNGIVTGNGNLD---RESEYVKNNTYTVIMLVTDDGVSVGTGT  429 (546)
T ss_dssp             SEEEEECCEECCCTTCCCCEEEEECCC-SSCCCEEETTTTEEEECSCCC---TTSSSCCSSCCEEEEEEEECSSSCCCCC
T ss_pred             CCEEEEEEEECCCCCCCceEEEEECCC-CCCcEEEeCCcEEEEECCccC---CccccCCCCEEEEEEEEEECCCCCcEeE
Confidence            999999999999999999999999875 578999999999999999999   9987    89999999999999999999


Q ss_pred             EEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCcee
Q psy8639         370 LVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYV  449 (570)
Q Consensus       370 ~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  449 (570)
                      ++|.|.|.|+||++|.|...  ...++|+.++|+ +  +.|+|+|.                                  
T Consensus       430 ~~v~I~V~DvNDn~P~f~~~--~~~v~e~~~~g~-v--v~A~D~D~----------------------------------  470 (546)
T 1l3w_A          430 GTLILHVLDVNDNGPVPSPR--VFTMCDQNPEPQ-V--LTISDADI----------------------------------  470 (546)
T ss_dssp             EEEECCBCCCCCSCCCBSCC--CEEECSSSCCCE-E--EEBCCSSC----------------------------------
T ss_pred             EEEEEEEEECCCCcCCccCc--eEEEecCCCCCe-E--EEEEeCCC----------------------------------
Confidence            99999999999999999843  688999999997 3  89999999                                  


Q ss_pred             EEEEEeecCCCce-EEEEecCCCCCCcEEEeCCCc---EEEEcccCCccccceEEEEEEEEeCCCCCeeEEEEEEEEEec
Q psy8639         450 YHMYLISDFSGYN-LTYMIPAGVADDMFKIDAETG---VVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDV  525 (570)
Q Consensus       450 ~~~~~~~~~~~~~-~~y~i~~~~~~~~F~Id~~tG---~i~~~~~lD~E~~~~~~l~V~atD~~~~~~~~~~v~I~V~dv  525 (570)
                              +.++. ++|+|..+. .+.|.| ..+|   .+.+ +.+|||..+.|.|.|+|+|+++ ++++++|+|+|+|+
T Consensus       471 --------~~n~~~~~y~l~~~~-~~~f~i-~~~g~~~~~~~-~~~d~e~~~~y~l~V~a~D~g~-~s~~~~v~I~V~d~  538 (546)
T 1l3w_A          471 --------PPNTYPYKVSLSHGS-DLTWKA-ELDSKGTSMLL-SPTQQLKKGDYSIYVLLSDAQN-NPQLTVVNATVCSC  538 (546)
T ss_dssp             --------TTTTCCCCCBCCSCS-SSSCBC-CBCTTSSEEEE-BCSSCCCSSCBCCEEECCSSSC-CCEEEECCEEECSC
T ss_pred             --------CCCCccEEEEECCCC-CCCEEE-eccCCceEEEe-cccccccCceEEEEEEEEECCc-CceEEEEEEEEEec
Confidence                    77776 899997654 357888 3344   4443 4568999999999999999995 89999999999999


Q ss_pred             CCCCccc
Q psy8639         526 NDNAPEF  532 (570)
Q Consensus       526 Nd~~P~f  532 (570)
                      |||++..
T Consensus       539 NDn~~~C  545 (546)
T 1l3w_A          539 EGKAIKC  545 (546)
T ss_dssp             SSSCCCC
T ss_pred             cCCCCCc
Confidence            9997653

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=6.9e-65  Score=574.51  Aligned_cols=451  Identities=20%  Similarity=0.271  Sum_probs=306.5

Q ss_pred             EEEEccCCCCcEEEEecCCCcccccccccccceeec-CCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceE
Q psy8639          31 KYLSNNEVCPKQIFTSTPNMVSRCKFKKYLSNNEIK-EDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFD  109 (570)
Q Consensus        31 ~v~d~nd~~p~~~~~~~~~~~~~p~f~~~~~~~~v~-E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~  109 (570)
                      .+.|+|||+|              .|.+..|.++|+ |+.++|+.|+++.|+|+|   .+..++|++.       ...|.
T Consensus        26 ~~~d~ndn~P--------------~F~~~~y~~~v~~e~~~~Gt~V~~v~a~D~D---~n~~i~Y~~~-------~~~F~   81 (880)
T 1q55_A           26 INADVSGCKP--------------GFSSAEYIFSVNRRELERGRKLGKVNFSDCT---TRKHGLYDVG-------DSRFR   81 (880)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecccccCCCC--------------ccCCCeEEEEechhhCCCCCEEEEEEEEeCC---CCceEEEEeC-------CCCEE
Confidence            7788888888              488888989999 999999999999999998   4678999981       24899


Q ss_pred             EECcccEEEECCcCCCCCCCeEEEEEEEEeCCCCCCCceeEEEEEEE-EeeC----------CCCCCcCCCCce------
Q psy8639         110 IDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIE-IVDV----------NDNAPRWGENPL------  172 (570)
Q Consensus       110 id~~~G~l~~~~~LD~E~~~~~~l~v~a~D~~g~~~~~s~~~~v~I~-V~dv----------Nd~~P~f~~~~~------  172 (570)
                      |++ +|.|+++++||||..  |.|+|+|+|.++  +  .....|+|. |.+.          |+++|.|....+      
T Consensus        82 Id~-~G~i~~~~~Ld~e~~--~~l~V~A~D~~~--~--~~~~~v~v~~v~~~~~~~~~~~~~~~~~p~f~~~~~~~~r~~  154 (880)
T 1q55_A           82 VLP-DGTVLVKRHVKLHKD--TKFTISTWDARG--I--KHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKK  154 (880)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ECC-CceEEECCccccccc--eEEEEEEEcCCC--C--eEEEEEEEEEecccccccccccccccCcccccccccccceee
Confidence            997 899999999999997  999999999654  2  334445555 3332          455788876532      


Q ss_pred             ------EEEEeCCCC--CCeEEEEeEEecCCCCCCceEEEEEEecCC---CCCcEEEeCCCcEEEEcccCCccCcceEEE
Q psy8639         173 ------TIPVNEDTL--VGSTIWNFTATDADDGSNGELRYGLVRQYP---EGNHFSVDHLTGTLTLLQPLDYETLTSFIL  241 (570)
Q Consensus       173 ------~~~v~E~~~--~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~---~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l  241 (570)
                            .+.|.|+.+  .+..++++.+ |.|  .++.++|+|..+..   +.+.|.|++.+|.|++.++||||....|.|
T Consensus       155 r~~~~~~~~v~En~~~~~~~~v~~v~~-d~d--~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l  231 (880)
T 1q55_A          155 RDWVIPPIKVSENERGPFPKRLVQIKS-NKD--RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVL  231 (880)
T ss_dssp             -CCCCCCEEEESSCCSSSCEEEEECCC-SGG--GSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEE
T ss_pred             ccccccceEEeCCCCCCCCeEEEEEee-CCC--CCceEEEEEECCCCCCCcCCEEEEECCcCEEEECCccCccccCccEE
Confidence                  579999987  4667777764 444  67899999987632   246899999999999999999999999999


Q ss_pred             EEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCCC---CCeEEEEEEE
Q psy8639         242 VVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSG---DNGRVTYVIS  318 (570)
Q Consensus       242 ~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~~i~ysi~  318 (570)
                      +|+|+|.+++.   .+.++.|+|+|.|+|||+|.|....  |.+.|.|++++|+.++++.|+|+|.+   .|+.++|+|.
T Consensus       232 ~v~A~D~g~~~---~~~~~~v~I~V~DvNDn~P~F~~~~--y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~  306 (880)
T 1q55_A          232 SSHAVSENGSP---VEEPMEITINVIDQNDNRPKFTQDV--FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSIL  306 (880)
T ss_dssp             EEEEEESSSCB---CSCCEEEEEEEECCSCCCCEESSSC--EEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEE
T ss_pred             EEEEEECCCCc---eeeeEEEEEEEEecCCCCCCccCCc--EEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEc
Confidence            99999998754   6778999999999999999999876  89999999999999999999999998   6899999999


Q ss_pred             eCC----CCCcEEEecCCCEEEEE-eecCcccccceeEEEEEEEEEECCcCCceeEEEEEEEEeeCCCCCCeecCCeeEE
Q psy8639         319 GGN----EDARFHLDHDKGILSLA-RVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHA  393 (570)
Q Consensus       319 ~~~----~~~~F~id~~tG~l~~~-~~ld~~d~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~  393 (570)
                      .+.    ..++|.|++.+|.|++. +.||   ||....|.|+|+|+|+|.|+++++++|.|+|.|+|||+|.|....|.+
T Consensus       307 ~~~~~~~~~~~F~Id~~tG~I~~~~~~LD---rE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~  383 (880)
T 1q55_A          307 KQDPEEPIPNLFTINRETGVISLIGTGLD---REKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTA  383 (880)
T ss_dssp             EESSCCSCSCSEEECTTTCEEEECSCCCC---TTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEE
T ss_pred             CCCCCcccCCeEEEccCCccEEEecccCC---HHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccceEE
Confidence            875    35799999999999985 6888   999999999999999998889999999999999999999999999999


Q ss_pred             EEeCCCCCCcEEEEEEEecCC--CCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCCceEEEEecCCC
Q psy8639         394 NVSEDAIPGTYIIKVVARSPS--TYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGV  471 (570)
Q Consensus       394 ~v~E~~~~gt~v~~v~a~D~D--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~  471 (570)
                      .|.|+ ++|+.|++|.|+|+|  .                                          +.++.++|+|.. +
T Consensus       384 ~V~En-~~gt~V~~v~A~D~D~~~------------------------------------------g~n~~v~Ysi~~-~  419 (880)
T 1q55_A          384 LVPEN-EIGFEVQRLSVTDLDMPG------------------------------------------TPAWQAVYKIRV-N  419 (880)
T ss_dssp             EEESS-SCCCEEEEECBCCCSCTT------------------------------------------STTSCEECCBSC-C
T ss_pred             EeecC-CCCcEEEEEEEECCCCCC------------------------------------------CCCceEEEEEec-C
Confidence            99999 999999999999999  5                                          678899999987 6


Q ss_pred             CCCcEEEe--C--CCcEEEEcccCCccccceEEEEEEEEeCCC----CCeeEEEEEEEEEecCCCCcccccCCeeeEEec
Q psy8639         472 ADDMFKID--A--ETGVVTLARSLDRETVDQYNLVVHVTDSKS----GDYDTTNVFITILDVNDNAPEFKSGSCYPITIP  543 (570)
Q Consensus       472 ~~~~F~Id--~--~tG~i~~~~~lD~E~~~~~~l~V~atD~~~----~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~~v~  543 (570)
                      ..+.|.|+  +  .+|.|++.++||||....|.|+|+|+|++.    +++++++|+|+|.|+|| +|.|. +..|...|+
T Consensus       420 ~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND-~P~f~-~~~y~~~V~  497 (880)
T 1q55_A          420 EGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFV-PAVSRVDVS  497 (880)
T ss_dssp             TTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEES-SCEECCCBC
T ss_pred             CCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCC-CCEEe-cCceEEEEe
Confidence            67899995  2  579999999999999999999999999863    36889999999999999 99999 788999999


Q ss_pred             CCCCCC-eEEEEEEEeCCCCCcceecC
Q psy8639         544 ENSEAA-NVHTFIATDFGNFHKSFIDS  569 (570)
Q Consensus       544 E~~~~~-~v~~i~a~D~D~~~~~~~~~  569 (570)
                      |+.+.| .|+++.|+|+|.|.++.+.+
T Consensus       498 En~~~Gt~V~~v~A~D~D~g~n~~v~Y  524 (880)
T 1q55_A          498 EDLSRGEKIISLVAQDPDKQQIQKLSY  524 (880)
T ss_dssp             TTCCSSEEEEECCEECCCTTCCCCEEE
T ss_pred             CCCCCCCEEEEEEEEeCCCCCCCcEEE
Confidence            999999 88999999999988776543

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=4.2e-60  Score=496.45  Aligned_cols=389  Identities=22%  Similarity=0.359  Sum_probs=344.8

Q ss_pred             CeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEEC--------cccEEEECCcCCCCCC---CeEEEEEEEEeC
Q psy8639          72 GFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDK--------SSGSLVVARQLDRETC---PEYKLEVRALDT  140 (570)
Q Consensus        72 gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~--------~~G~l~~~~~LD~E~~---~~~~l~v~a~D~  140 (570)
                      ...+.+++|+|+|.+ .++.++|+|  .. ......|.|++        .+|.|+++++||||+.   ..|.|.|+|+|.
T Consensus         8 ~~Pv~~v~AtD~D~g-~n~~v~Ysi--~~-~~~~~~F~I~~~~~~f~v~~tG~i~~~~~LD~E~~~~~~~~~~~V~a~d~   83 (419)
T 3ubh_A            8 VRPTKRIEFTEADGD-TEGKSVFQL--EK-ETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM   83 (419)
T ss_dssp             EEEEEEEEEEGGGGC-STTCEEEEC--CC-SSTTCEEEESSCCSSEEECTTSEEEESSCCCGGGSCTTCEEEEEEEEEC-
T ss_pred             ccceEEEEEEcccCC-CCceEEEEE--ec-CCCCceEEEcCCCccEEECCCcEEEECCccCccccCccceEEEEEEEEeC
Confidence            356889999999998 799999999  33 34468899986        7999999999999997   699999999996


Q ss_pred             CCCC-CCceeEEEEEEEEeeCCCCCCcCCCCc--eEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCCCCcEE
Q psy8639         141 STSS-NPQSSAVAIKIEIVDVNDNAPRWGENP--LTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFS  217 (570)
Q Consensus       141 ~g~~-~~~s~~~~v~I~V~dvNd~~P~f~~~~--~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~  217 (570)
                      +... ...++...|+|+|.|+|||+|.|....  |...|.|++++|+.++++.|+|+|.|.+  ++|+|..+.. .+.|.
T Consensus        84 g~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~i~~~~~-~~~F~  160 (419)
T 3ubh_A           84 GHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRT-GGRFE  160 (419)
T ss_dssp             -CCSSSCCEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEESS-SSCEE
T ss_pred             CCCCCCCCcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEEEECCCCCce--eEEEEEeCCC-CCeEE
Confidence            5311 257788999999999999999999876  7899999999999999999999998875  9999987653 57999


Q ss_pred             EeCCCcEEEEcccCCccCcceEEEEEEEEECCCCCCC-CceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeE
Q psy8639         218 VDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISE-RLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSH  296 (570)
Q Consensus       218 Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~-~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~  296 (570)
                      |++.+|.|++.+.||+|....|.|+|+|+|++++..+ .+++++.+.|.|.| |||+|.|....  |.+.|.|+.+.|+.
T Consensus       161 I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~--y~~~v~En~~~gt~  237 (419)
T 3ubh_A          161 VDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPS--YEAEIPENQKKDSD  237 (419)
T ss_dssp             ECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESSSC--EEEEEETTCCTTCE
T ss_pred             EeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCceecCe--eEEEecCCCCCCcE
Confidence            9999999999999999999999999999998764221 25778889999999 99999998877  89999999999999


Q ss_pred             EEEEEEEeCCCCCCeEEEEEEE-eCCCCCcEEEecCCCEEEEEeecCccccccee---EEEEEEEEEECCcCCceeEEEE
Q psy8639         297 VTKMTAVDQDSGDNGRVTYVIS-GGNEDARFHLDHDKGILSLARVISEYDHQSKF---RAVLNITASDHGIPPKSSSLVI  372 (570)
Q Consensus       297 v~~v~a~D~D~~~~~~i~ysi~-~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~---~~~l~V~a~D~g~~~~s~~~~v  372 (570)
                      ++++.|+|+|   ++.++|+|. .++..++|.|++.+|.|++.+.||   ||...   .|.|+|.|+|.+ +++++.++|
T Consensus       238 v~~v~A~D~d---n~~i~Ysi~~~~~~~~~F~I~~~tG~i~~~~~LD---~E~~~~~~~y~l~V~a~dd~-~~~s~~~~v  310 (419)
T 3ubh_A          238 IISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELD---FEDLRQPHVYSLIVTATEDS-GGFSTSVDL  310 (419)
T ss_dssp             EEECCEECSS---CCCCEEEEEESSSCCSSEEECTTTCEEEECSCCC---TTCTTSCSEEEEEEEEECTT-TSCEEEEEE
T ss_pred             EEEEEEecCC---CCceEEEEecCCCCCCcEEEECCCCEEEECcccC---ccccccccEEEEEEEEEeCC-CCcEEEEEE
Confidence            9999999987   677999998 455689999999999999999999   88765   899999999754 468899999


Q ss_pred             EEEEeeCCCCCCeecCCeeEE-EEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEE
Q psy8639         373 NILSETVSTSLPTFLSPSYHA-NVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYH  451 (570)
Q Consensus       373 ~I~V~dvNd~~P~f~~~~~~~-~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  451 (570)
                      +|.|.|+|||+|.|..+.|.. .|+|+.++|+.|+++.|+|+|.                                    
T Consensus       311 ~I~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~------------------------------------  354 (419)
T 3ubh_A          311 TIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDS------------------------------------  354 (419)
T ss_dssp             EEEEECCCCCCCEESSSEEEEEEEETTCCTTCEEEECCEECSSC------------------------------------
T ss_pred             EEEEEccCCCCCcccCCcceeEEecCCCCCCCEEEEEEEEeCCC------------------------------------
Confidence            999999999999999998886 7999999999999999999999                                    


Q ss_pred             EEEeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCccc-cceEEEEEEEEeCCC-CCeeEEEEEEEEEe
Q psy8639         452 MYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRET-VDQYNLVVHVTDSKS-GDYDTTNVFITILD  524 (570)
Q Consensus       452 ~~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~-~~~~~l~V~atD~~~-~~~~~~~v~I~V~d  524 (570)
                            +.|+.++|+|..    ++|.|++ +|.|++.+.||||. ...|.|+|+|+|++. +++++++|+|.|.|
T Consensus       355 ------g~n~~v~Y~i~~----~~F~Id~-~G~i~~~~~ld~E~~~~~y~l~V~a~D~G~p~~sst~~v~I~v~n  418 (419)
T 3ubh_A          355 ------GSNAEIEYLVSD----DHFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN  418 (419)
T ss_dssp             ------GGGGCEEEEESC----TTEEECT-TCEEEECSCSSSSCTTCEEEEEEEEEECCSSCCEEEEEEEEEEEC
T ss_pred             ------CCCCEEEEEEcC----CcEEECC-CeEEEECcccCcccCCceEEEEEEEEECCcCCceeEEEEEEEEec
Confidence                  889999999954    4899998 89999999999998 689999999999998 68888898888876

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=1.5e-52  Score=439.15  Aligned_cols=333  Identities=24%  Similarity=0.357  Sum_probs=296.4

Q ss_pred             eEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeC--------CCcEEEEcccCCccCc---ceEEEEEEEEECCCCC
Q psy8639         184 STIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDH--------LTGTLTLLQPLDYETL---TSFILVVKVTDQAANI  252 (570)
Q Consensus       184 t~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~--------~~G~i~~~~~lD~e~~---~~~~l~v~a~D~~~~~  252 (570)
                      ..+.+|.|+|+|.|.|+.++|+|..+.. ...|.|++        .+|.|++.++||||..   ..|.|.|.|+|.+.+.
T Consensus         9 ~Pv~~v~AtD~D~g~n~~v~Ysi~~~~~-~~~F~I~~~~~~f~v~~tG~i~~~~~LD~E~~~~~~~~~~~V~a~d~g~~~   87 (419)
T 3ubh_A            9 RPTKRIEFTEADGDTEGKSVFQLEKETD-KETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNA   87 (419)
T ss_dssp             EEEEEEEEEGGGGCSTTCEEEECCCSST-TCEEEESSCCSSEEECTTSEEEESSCCCGGGSCTTCEEEEEEEEEC--CCS
T ss_pred             cceEEEEEEcccCCCCceEEEEEecCCC-CceEEEcCCCccEEECCCcEEEECCccCccccCccceEEEEEEEEeCCCCC
Confidence            5688999999999999999999987643 57899986        7999999999999997   6899999999987554


Q ss_pred             CCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCC
Q psy8639         253 SERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDK  332 (570)
Q Consensus       253 ~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~t  332 (570)
                      +...++.+.|.|+|.|+|||+|.|......|...|.|++++|+.++++.|+|+|.|.+  ++|+|..++..++|.|++.+
T Consensus        88 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~i~~~~~~~~F~I~~~t  165 (419)
T 3ubh_A           88 GIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERS  165 (419)
T ss_dssp             SSCCEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEESSSSCEEECTTT
T ss_pred             CCCCcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEEEECCCCCce--eEEEEEeCCCCCeEEEeCCc
Confidence            3347888999999999999999998764335789999999999999999999999877  89999987778999999999


Q ss_pred             CEEEEEeecCcccccceeEEEEEEEEEECCcC----CceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEE
Q psy8639         333 GILSLARVISEYDHQSKFRAVLNITASDHGIP----PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKV  408 (570)
Q Consensus       333 G~l~~~~~ld~~d~e~~~~~~l~V~a~D~g~~----~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v  408 (570)
                      |.|++.+.++   +|....|.|+|+|+|+|.+    .+++++++.|.|.| ||++|.|.+..|.+.|.||.++|+.|+++
T Consensus       166 G~i~~~~~ld---~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~y~~~v~En~~~gt~v~~v  241 (419)
T 3ubh_A          166 GVVRTRGTDL---FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISI  241 (419)
T ss_dssp             CEEEECSSSC---CCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESSSCEEEEEETTCCTTCEEEEC
T ss_pred             eEEEEecccc---cccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCceecCeeEEEecCCCCCCcEEEEE
Confidence            9999999888   9988999999999998754    45788889999999 99999999999999999999999999999


Q ss_pred             EEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCCceEEEEec-CCCCCCcEEEeCCCcEEEE
Q psy8639         409 VARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIP-AGVADDMFKIDAETGVVTL  487 (570)
Q Consensus       409 ~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~-~~~~~~~F~Id~~tG~i~~  487 (570)
                      .|+|+|.                                             +.++|+|. .++..++|+|++.+|.|++
T Consensus       242 ~A~D~dn---------------------------------------------~~i~Ysi~~~~~~~~~F~I~~~tG~i~~  276 (419)
T 3ubh_A          242 KAKSFAD---------------------------------------------REIRYTLKAQGQGAGTFNIGPTSGIVKL  276 (419)
T ss_dssp             CEECSSC---------------------------------------------CCCEEEEEESSSCCSSEEECTTTCEEEE
T ss_pred             EEecCCC---------------------------------------------CceEEEEecCCCCCCcEEEECCCCEEEE
Confidence            9999765                                             67999996 4666789999999999999


Q ss_pred             cccCCccccc---eEEEEEEEEeCCCCCeeEEEEEEEEEecCCCCcccccCCeeeE-EecCCCCCC-eEEEEEEEeCCCC
Q psy8639         488 ARSLDRETVD---QYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPI-TIPENSEAA-NVHTFIATDFGNF  562 (570)
Q Consensus       488 ~~~lD~E~~~---~~~l~V~atD~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~-~v~E~~~~~-~v~~i~a~D~D~~  562 (570)
                      .++||||...   .|.|+|+|+|.+++++++++|+|+|.|+|||+|.|. ...|.. .|+|+.+.| .|+++.|+|+|+|
T Consensus       277 ~~~LD~E~~~~~~~y~l~V~a~dd~~~~s~~~~v~I~V~DvNDn~P~f~-~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g  355 (419)
T 3ubh_A          277 AKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFE-LPDYQAHNVDEDIPLGTSILRVKAMDSDSG  355 (419)
T ss_dssp             CSCCCTTCTTSCSEEEEEEEEECTTTSCEEEEEEEEEEECCCCCCCEES-SSEEEEEEEETTCCTTCEEEECCEECSSCG
T ss_pred             CcccCccccccccEEEEEEEEEeCCCCcEEEEEEEEEEEccCCCCCccc-CCcceeEEecCCCCCCCEEEEEEEEeCCCC
Confidence            9999999875   799999999655478899999999999999999999 777876 799999999 8999999999999


Q ss_pred             CcceecC
Q psy8639         563 HKSFIDS  569 (570)
Q Consensus       563 ~~~~~~~  569 (570)
                      .|+.+.+
T Consensus       356 ~n~~v~Y  362 (419)
T 3ubh_A          356 SNAEIEY  362 (419)
T ss_dssp             GGGCEEE
T ss_pred             CCCEEEE
Confidence            9986643

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=6.3e-50  Score=403.02  Aligned_cols=301  Identities=28%  Similarity=0.461  Sum_probs=268.4

Q ss_pred             cceeecCC--CCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEE
Q psy8639          61 SNNEIKED--VPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRAL  138 (570)
Q Consensus        61 ~~~~v~E~--~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~  138 (570)
                      +...|.|+  .+.|+.|+++. +|+|.+  ++.++|+|.+   ....+.|.|++.+|.|++.++||||....|.|+|+|+
T Consensus         5 ~~~~v~E~~~~~~~~~v~~va-~D~D~g--~~~i~Y~l~~---~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~   78 (322)
T 2a62_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG--SKKIKYILSG---DGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAV   78 (322)
T ss_dssp             CCEECCCSCCCSSCEECCCCC-CCCCCS--SCCCEEEEEE---TTBTTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEE
T ss_pred             ceeeeccccCCCCCEEEEEEE-EcCCCC--CCEEEEEEEC---CCCCCcEEEeCCcCEEEEeccCCcccccEEEEEEEEE
Confidence            45689999  88999999986 899976  5789999943   2345789999999999999999999999999999999


Q ss_pred             eCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCC---CCCceEEEEEEecCCCCCc
Q psy8639         139 DTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADD---GSNGELRYGLVRQYPEGNH  215 (570)
Q Consensus       139 D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~---g~~~~~~y~l~~~~~~~~~  215 (570)
                      |.+++ ++++....|+|+|.|+|||+|.|....|.+.|.|+++.|+.++++.|+|+|.   |.|+.++|+|.++.   ++
T Consensus        79 D~~~~-~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~---~~  154 (322)
T 2a62_A           79 DFETN-KPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ---PY  154 (322)
T ss_dssp             CTTTC-SEEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEECT---TT
T ss_pred             ECCCC-CcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccCC---CC
Confidence            96542 4577888999999999999999999999999999999999999999999995   78899999999864   58


Q ss_pred             EEEeCCCcEEEEc-ccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCC
Q psy8639         216 FSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVG  294 (570)
Q Consensus       216 F~Id~~~G~i~~~-~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g  294 (570)
                      |.|++.+|.|++. +.||||....|.|+|.|+|.++++.+ ++++++|+|+|.|+|||+|.|....  |.+.|.|+.+.|
T Consensus       155 F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~-~s~~~~v~I~V~DvNDn~P~F~~~~--y~~~v~En~~~g  231 (322)
T 2a62_A          155 FSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGG-LSGTTTLTVTLTDVNDNPPKFAQSL--YHFSVPEDVVLG  231 (322)
T ss_dssp             EEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSC-CBCCEEEEEEECCCCCCCCCCSCSE--EEEEECSCCSSC
T ss_pred             EEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCC-ceeEEEEEEEEEecCCCCCeecCCC--ceeEeECCCCCC
Confidence            9999999999998 89999999999999999999876433 6889999999999999999998776  899999999999


Q ss_pred             eEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEe----cCCCEEEEEeecCcccccceeEEEEEEEEEECCcCC-----
Q psy8639         295 SHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLD----HDKGILSLARVISEYDHQSKFRAVLNITASDHGIPP-----  365 (570)
Q Consensus       295 ~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id----~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g~~~-----  365 (570)
                      +.++++.|+|+|.|.|+.++|+|..++..++|.|+    ..+|.|++.++||   ||....|.|+|.|+|+|.|+     
T Consensus       232 t~v~~v~A~D~D~g~n~~i~Y~i~~g~~~~~F~I~~d~~~~tG~i~~~~~LD---~E~~~~y~l~V~A~D~g~pp~~~~~  308 (322)
T 2a62_A          232 TAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLD---FETKKSYTLKVEAANIHIDPRFSSR  308 (322)
T ss_dssp             CEEEEEECCCSSCGGGTCCEEEEC---CCSSBCCBCCTTTSEEEEEBCSCCC---CSSCCEEEEEEEEECCCSSCTTSSC
T ss_pred             cEEEEEEEEeCCCCCCceEEEEEECCCCCCcEEEeccCCCceEEEEECCcCC---cccCCeEEEEEEEEECCCCCccccC
Confidence            99999999999999999999999988778999998    4579999999999   99999999999999998775     


Q ss_pred             --ceeEEEEEEEEe
Q psy8639         366 --KSSSLVINILSE  377 (570)
Q Consensus       366 --~s~~~~v~I~V~  377 (570)
                        ++++++|.|.|.
T Consensus       309 ~~~s~~~~V~I~V~  322 (322)
T 2a62_A          309 GPFKDTATVKIVVE  322 (322)
T ss_dssp             CCCCCCCEEEEEEC
T ss_pred             CCcccEEEEEEEEC
Confidence              357788888773

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=4.9e-48  Score=389.24  Aligned_cols=298  Identities=28%  Similarity=0.383  Sum_probs=267.0

Q ss_pred             eEEEEeCC--CCCCeEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECC
Q psy8639         172 LTIPVNED--TLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQA  249 (570)
Q Consensus       172 ~~~~v~E~--~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~  249 (570)
                      +.+.|.|+  .+.|+.++++. +|.|.| ++.++|+|..+. ..++|.|++.+|.|++.++||||....|.|+|.|+|++
T Consensus         5 ~~~~v~E~~~~~~~~~v~~va-~D~D~g-~~~i~Y~l~~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~   81 (322)
T 2a62_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDG-AGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFE   81 (322)
T ss_dssp             CCEECCCSCCCSSCEECCCCC-CCCCCS-SCCCEEEEEETT-BTTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEECTT
T ss_pred             ceeeeccccCCCCCEEEEEEE-EcCCCC-CCEEEEEEECCC-CCCcEEEeCCcCEEEEeccCCcccccEEEEEEEEEECC
Confidence            45688999  88999999985 899987 678999998753 24699999999999999999999999999999999987


Q ss_pred             CCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCC---CCCeEEEEEEEeCCCCCcE
Q psy8639         250 ANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARF  326 (570)
Q Consensus       250 ~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~---~~~~~i~ysi~~~~~~~~F  326 (570)
                      ++.  .++..+.+.|+|.|+|||+|.|....  |.+.|.|+++.|+.++++.|+|+|.   |.|+.++|+|..+  ..+|
T Consensus        82 ~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~--y~~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~--~~~F  155 (322)
T 2a62_A           82 TNK--PLEPPSEFIIKVQDINDNAPEFLNGP--YHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG--QPYF  155 (322)
T ss_dssp             TCS--EEEEEEEECEECCCCSCSCBCCSSSE--EEEEECSSCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEEC--TTTE
T ss_pred             CCC--cccceEEEEEEEEecCCCCCccCCCc--eEEEEeCCCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccC--CCCE
Confidence            531  16778899999999999999998876  8999999999999999999999996   7889999999986  4689


Q ss_pred             EEecCCCEEEEE-eecCcccccceeEEEEEEEEEECCcCC--ceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCc
Q psy8639         327 HLDHDKGILSLA-RVISEYDHQSKFRAVLNITASDHGIPP--KSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGT  403 (570)
Q Consensus       327 ~id~~tG~l~~~-~~ld~~d~e~~~~~~l~V~a~D~g~~~--~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt  403 (570)
                      .|++.+|.|++. +.||   ||....|.|+|.|+|+|.|+  +++.++|+|.|.|+|||+|.|.+..|.+.|.|+.++|+
T Consensus       156 ~Id~~tG~i~~~~~~LD---~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt  232 (322)
T 2a62_A          156 SIEPETAIIKTALPNMD---REAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGT  232 (322)
T ss_dssp             EECTTTCCEEECSSCCC---GGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEECCCCCCCCCCSCSEEEEEECSCCSSCC
T ss_pred             EEecCCCEEEecccCCC---cccCCeEEEEEEEEECCCCCCCceeEEEEEEEEEecCCCCCeecCCCceeEeECCCCCCc
Confidence            999999999998 8899   99999999999999998874  88999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCCceEEEEecCCCCCCcEEEe----
Q psy8639         404 YIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKID----  479 (570)
Q Consensus       404 ~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~F~Id----  479 (570)
                      .|++|.|+|+|.                                          +.|+.++|+|..++..+.|.|+    
T Consensus       233 ~v~~v~A~D~D~------------------------------------------g~n~~i~Y~i~~g~~~~~F~I~~d~~  270 (322)
T 2a62_A          233 AIGRVKANDQDI------------------------------------------GENAQSSYDIIDGDGTALFEITSDAQ  270 (322)
T ss_dssp             EEEEEECCCSSC------------------------------------------GGGTCCEEEEC---CCSSBCCBCCTT
T ss_pred             EEEEEEEEeCCC------------------------------------------CCCceEEEEEECCCCCCcEEEeccCC
Confidence            999999999999                                          8899999999888778899998    


Q ss_pred             CCCcEEEEcccCCccccceEEEEEEEEeCCC--------CCeeEEEEEEEEE
Q psy8639         480 AETGVVTLARSLDRETVDQYNLVVHVTDSKS--------GDYDTTNVFITIL  523 (570)
Q Consensus       480 ~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~--------~~~~~~~v~I~V~  523 (570)
                      ..+|.|++.++||||....|.|+|+|+|++.        +++++++|.|+|.
T Consensus       271 ~~tG~i~~~~~LD~E~~~~y~l~V~A~D~g~pp~~~~~~~~s~~~~V~I~V~  322 (322)
T 2a62_A          271 AQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVVE  322 (322)
T ss_dssp             TSEEEEEBCSCCCCSSCCEEEEEEEEECCCSSCTTSSCCCCCCCCEEEEEEC
T ss_pred             CceEEEEECCcCCcccCCeEEEEEEEEECCCCCccccCCCcccEEEEEEEEC
Confidence            4589999999999999999999999999875        2457788888873

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=1.7e-46  Score=378.75  Aligned_cols=291  Identities=26%  Similarity=0.396  Sum_probs=245.9

Q ss_pred             eEEEEeEEecCCCCCCceEEEEEEecCC--------CCCcEEEeCCCcEEEEcccCCccCc-----ceEEEEEEEEECCC
Q psy8639         184 STIWNFTATDADDGSNGELRYGLVRQYP--------EGNHFSVDHLTGTLTLLQPLDYETL-----TSFILVVKVTDQAA  250 (570)
Q Consensus       184 t~v~~v~a~D~D~g~~~~~~y~l~~~~~--------~~~~F~Id~~~G~i~~~~~lD~e~~-----~~~~l~v~a~D~~~  250 (570)
                      ..+.++.|+|+|.|.++.+.|+|..+.+        ...+|.|++ +|.|++.++||||..     ..|.++|+|.|++.
T Consensus         4 ~p~~~~~atd~D~g~ng~v~y~l~~~~~~~~f~i~~~~~~F~i~~-tG~l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~   82 (316)
T 3ubf_A            4 RPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVET-NGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNA   82 (316)
T ss_dssp             EEEEEEEEESGGGCSTTCEEEECCCSSTTCEEEESSCCSSEEECT-TSEEEESSCCCGGGSCTTCEEEEEEEEEC-----
T ss_pred             CceEEEEEEecCCCCCceEEEEEEcCCCcceEEEeCCCCeEEECC-CeEEEECCccChhhcccccceEEEEEEEEcCCCC
Confidence            3466777777777777777777766432        135788888 999999999999984     57888888888774


Q ss_pred             CCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEec
Q psy8639         251 NISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDH  330 (570)
Q Consensus       251 ~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~  330 (570)
                      +.  +++++++|.|+|.|+|||+|.|......|.+.|.|++++|+.++++.|+|+|.|.+  ++|+|..++..++|.|++
T Consensus        83 ~~--~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n--i~Y~i~~~~~~~~F~Id~  158 (316)
T 3ubf_A           83 GI--KYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDE  158 (316)
T ss_dssp             ----CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEEESSSCEEECT
T ss_pred             CC--cccceEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCEEEEEEEECCCCCCc--eEEEEEeCCCCCEEEEEC
Confidence            31  26889999999999999999998764336899999999999999999999999877  999999776789999999


Q ss_pred             CCCEEEEEeecCcccccceeEEEEEEEEEECCc----CCceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEE
Q psy8639         331 DKGILSLARVISEYDHQSKFRAVLNITASDHGI----PPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYII  406 (570)
Q Consensus       331 ~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g~----~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~  406 (570)
                      .+|.|++.+.||   ||....|.|+|.|+|+|.    +.++++++++|.|.| ||++|.|.+..|.+.|.|+.++|+.|+
T Consensus       159 ~tG~i~~~~~lD---~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~  234 (316)
T 3ubf_A          159 RSGVVRTRGTDL---FQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDII  234 (316)
T ss_dssp             TTCEEEECSSCC---CCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEE
T ss_pred             CccEEEECCcCC---cccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEE
Confidence            999999999999   999999999999999874    457888999999999 999999999999999999999999999


Q ss_pred             EEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCCceEEEEec-CCCCCCcEEEeCCCcEE
Q psy8639         407 KVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIP-AGVADDMFKIDAETGVV  485 (570)
Q Consensus       407 ~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~-~~~~~~~F~Id~~tG~i  485 (570)
                      ++.|+|+|.                                             +.++|+|. .++..++|.|++.+|.|
T Consensus       235 ~v~A~D~Dn---------------------------------------------~~i~Y~i~~~~~~~~~F~Id~~tG~i  269 (316)
T 3ubf_A          235 SIKAKSFAD---------------------------------------------REIRYTLKAQGQGAGTFNIGPTSGIV  269 (316)
T ss_dssp             ECCEECTTC---------------------------------------------CCEEEEEEEESSCTTTEEECTTTCEE
T ss_pred             EEEEEeCCC---------------------------------------------CEEEEEEEcCCCCCCeEEEECCeEEE
Confidence            999999875                                             67999997 56677899999999999


Q ss_pred             EEcccCCcccc---ceEEEEEEEE-eCCCCCeeEEEEEEEEEecCCCC
Q psy8639         486 TLARSLDRETV---DQYNLVVHVT-DSKSGDYDTTNVFITILDVNDNA  529 (570)
Q Consensus       486 ~~~~~lD~E~~---~~~~l~V~at-D~~~~~~~~~~v~I~V~dvNd~~  529 (570)
                      ++.++||||..   ..|.|+|+|+ |++ +++++++|+|+|+|+||||
T Consensus       270 ~~~~~LD~E~~~~~~~y~l~V~A~dd~g-~~~~~~~v~I~V~DvNDn~  316 (316)
T 3ubf_A          270 KLAKELDFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVNDNA  316 (316)
T ss_dssp             EECSCCCSSCTTSCSEEEEEEEEEESSS-SCEEEEEEEEEEECC----
T ss_pred             EECCcCCccccCCCceEEEEEEEEECCC-CCEEEEEEEEEEEecCCCC
Confidence            99999999998   7999999999 555 7899999999999999985

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=1e-45  Score=373.06  Aligned_cols=296  Identities=19%  Similarity=0.300  Sum_probs=246.7

Q ss_pred             cceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCC-----CeEEEEE
Q psy8639          61 SNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETC-----PEYKLEV  135 (570)
Q Consensus        61 ~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~-----~~~~l~v  135 (570)
                      +.++.+|+.+.|+.++++.+.+       ..++|+|  .   ...++|.|++ +|.|+++++||||..     ..|.|+|
T Consensus         9 ~~atd~D~g~ng~v~y~l~~~~-------~~~~f~i--~---~~~~~F~i~~-tG~l~~~~~LD~E~~~~~~~~~~~l~v   75 (316)
T 3ubf_A            9 IEFTEADGDTEGKSVFQLEKET-------DKETFKI--R---DDNPWVTVET-NGAVRVKKKWDYEELGPEKTIDFWVII   75 (316)
T ss_dssp             EEEESGGGCSTTCEEEECCCSS-------TTCEEEE--S---SCCSSEEECT-TSEEEESSCCCGGGSCTTCEEEEEEEE
T ss_pred             EEEEecCCCCCceEEEEEEcCC-------CcceEEE--e---CCCCeEEECC-CeEEEECCccChhhcccccceEEEEEE
Confidence            5567777777788777776633       2467887  2   2246899998 999999999999994     4688888


Q ss_pred             EEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCc--eEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCCC
Q psy8639         136 RALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENP--LTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEG  213 (570)
Q Consensus       136 ~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~--~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~  213 (570)
                      +|.|++. ++.++++..|+|.|.|+|||+|.|....  |.+.|.|+++.|+.++++.|+|+|.|.+  ++|+|..+.. .
T Consensus        76 ~a~d~~~-~~~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n--i~Y~i~~~~~-~  151 (316)
T 3ubf_A           76 TNMGHNA-GIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRT-G  151 (316)
T ss_dssp             EC--------CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEEES-S
T ss_pred             EEcCCCC-CCcccceEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCEEEEEEEECCCCCCc--eEEEEEeCCC-C
Confidence            8888543 2357899999999999999999999876  8999999999999999999999998876  9999987643 5


Q ss_pred             CcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECCCCCC-CCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCC
Q psy8639         214 NHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANIS-ERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTR  292 (570)
Q Consensus       214 ~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~-~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~  292 (570)
                      ++|.|++.+|.|++.++||||....|.|+|.|+|++++.. +.+++++.++|.|.| |||+|.|....  |.+.|.|+++
T Consensus       152 ~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~--y~~~v~En~~  228 (316)
T 3ubf_A          152 GRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPS--YEAEIPENQK  228 (316)
T ss_dssp             SCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCCCCEESSSS--EEEEEETTCC
T ss_pred             CEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCC--ceEEEeCCCC
Confidence            7999999999999999999999999999999999986421 126778899999999 99999999887  8999999999


Q ss_pred             CCeEEEEEEEEeCCCCCCeEEEEEEE-eCCCCCcEEEecCCCEEEEEeecCcccccce---eEEEEEEEEEECCcCCcee
Q psy8639         293 VGSHVTKMTAVDQDSGDNGRVTYVIS-GGNEDARFHLDHDKGILSLARVISEYDHQSK---FRAVLNITASDHGIPPKSS  368 (570)
Q Consensus       293 ~g~~v~~v~a~D~D~~~~~~i~ysi~-~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~---~~~~l~V~a~D~g~~~~s~  368 (570)
                      +|+.++++.|+|+|   ++.++|+|. .++..++|.|++.+|.|++.+.||   ||..   ..|.|+|.|+|.+. ++++
T Consensus       229 ~gt~v~~v~A~D~D---n~~i~Y~i~~~~~~~~~F~Id~~tG~i~~~~~LD---~E~~~~~~~y~l~V~A~dd~g-~~~~  301 (316)
T 3ubf_A          229 KDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELD---FEDLRQPHVYSLIVTATEDSG-GFST  301 (316)
T ss_dssp             TTCEEEECCEECTT---CCCEEEEEEEESSCTTTEEECTTTCEEEECSCCC---SSCTTSCSEEEEEEEEEESSS-SCEE
T ss_pred             CCCEEEEEEEEeCC---CCEEEEEEEcCCCCCCeEEEECCeEEEEECCcCC---ccccCCCceEEEEEEEEECCC-CCEE
Confidence            99999999999998   677999998 566789999999999999999999   9987   79999999995333 5899


Q ss_pred             EEEEEEEEeeCCCCC
Q psy8639         369 SLVINILSETVSTSL  383 (570)
Q Consensus       369 ~~~v~I~V~dvNd~~  383 (570)
                      +++|+|.|.|+||||
T Consensus       302 ~~~v~I~V~DvNDn~  316 (316)
T 3ubf_A          302 SVDLTIRVTDVNDNA  316 (316)
T ss_dssp             EEEEEEEEECC----
T ss_pred             EEEEEEEEEecCCCC
Confidence            999999999999985

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=6.3e-37  Score=290.01  Aligned_cols=205  Identities=29%  Similarity=0.487  Sum_probs=185.9

Q ss_pred             ccccccccccc--eeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCC
Q psy8639          52 SRCKFKKYLSN--NEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCP  129 (570)
Q Consensus        52 ~~p~f~~~~~~--~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~  129 (570)
                      ++|.|.+..|.  ++|+|++++|+.|+++.|+|+|.    +.++|+|.+   ....+.|.|++.+|.|+++++||||...
T Consensus         4 ~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~----~~~~y~i~~---~~~~~~F~Id~~tG~i~~~~~LD~E~~~   76 (210)
T 3mvs_A            4 RLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN----DPLVFGVSG---EEASRFFAVEPDTGVVWLRQPLDRETKS   76 (210)
T ss_dssp             CCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTC----CCCEEEEES---HHHHHHEEECTTTCEEEESSCCCTTTCC
T ss_pred             CCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCC----CcEEEEEeC---CCCCCcEEEeCCCCEEEECCccCCcccc
Confidence            57899999998  59999999999999999999983    468999932   2335789999999999999999999999


Q ss_pred             eEEEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEec
Q psy8639         130 EYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQ  209 (570)
Q Consensus       130 ~~~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~  209 (570)
                      .|.|+|+|+|+++     ..+..++|+|.|+|||+|.|....|.+.|.|+.+.|+.++++.|+|+|.|.|+.++|+|..+
T Consensus        77 ~y~l~v~a~D~~~-----~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~~  151 (210)
T 3mvs_A           77 EFTVEFSVSDHQG-----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP  151 (210)
T ss_dssp             EEEEEEEEECSSC-----EEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEECCEECCSSGGGGCEEEEESSC
T ss_pred             eEEEEEEEEeCCC-----CEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEeCC
Confidence            9999999999643     46789999999999999999999999999999999999999999999999999999999764


Q ss_pred             CCCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCC
Q psy8639         210 YPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNA  273 (570)
Q Consensus       210 ~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~  273 (570)
                         .++|.|++.+|.|++.++||||....|.|+|.|+|+++++  .++++++++|+|.|+||+|
T Consensus       152 ---~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~--~~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          152 ---SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTR--PLSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             ---CSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSS--CCEEEEEEEEEEECCCCCC
T ss_pred             ---CCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCC--CCEEEEEEEEEEEccCCCC
Confidence               4699999999999999999999999999999999998532  3789999999999999975

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=2e-36  Score=286.64  Aligned_cols=206  Identities=26%  Similarity=0.420  Sum_probs=177.9

Q ss_pred             cccceeecCCC--CCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEE
Q psy8639          59 YLSNNEIKEDV--PIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVR  136 (570)
Q Consensus        59 ~~~~~~v~E~~--~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~  136 (570)
                      -.|.+.|.|+.  +.|+.|+++ |+|+|.+  ++.++|+|.+   ......|.|++.+|.|+++++||||....|.|+|+
T Consensus         4 ~~~~~~v~En~~~p~~~~v~~v-a~D~D~g--n~~i~Y~l~~---~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~   77 (215)
T 2a4e_A            4 VWNQFFVIEEYTGPDPVLVGRL-HSDIDSG--DGNIKYILSG---EGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQ   77 (215)
T ss_dssp             CCCEEEEETTCCSSSCEEEEEC-CCTTCCS--SSCEEEEEEE---TTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEE
T ss_pred             EEeeEEEeccCCCCCCEEEEEE-EECCCCC--CCeEEEEEEC---CCCCCeEEEECCceEEEECCccCCccCCEEEEEEE
Confidence            34677899994  579999988 7999976  6889999943   23356899999999999999999999999999999


Q ss_pred             EEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCC---CCCceEEEEEEecCCCC
Q psy8639         137 ALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADD---GSNGELRYGLVRQYPEG  213 (570)
Q Consensus       137 a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~---g~~~~~~y~l~~~~~~~  213 (570)
                      |+|.+++ ++++.+..|+|+|.|+|||+|.|....|.+.|.|+.+.|+.++++.|+|+|.   |.|+.++|+|..+.   
T Consensus        78 a~D~~~~-~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~---  153 (215)
T 2a4e_A           78 AVDRDTN-RPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ---  153 (215)
T ss_dssp             EEETTTC-CEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCEECSSCTTTCSSSCCEEEEEEST---
T ss_pred             EEECCCC-CcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEEEECCCCCCCCceEEEEEEeCCC---
Confidence            9997542 4578889999999999999999999999999999999999999999999996   88899999999864   


Q ss_pred             CcEEEeCCCcEEEEc-ccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCe
Q psy8639         214 NHFSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV  275 (570)
Q Consensus       214 ~~F~Id~~~G~i~~~-~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~  275 (570)
                      ..|.|++.+|.|++. ++||||....|.|.|.|+|.++++.+ ++++++|.|+|.|+|||+|+
T Consensus       154 ~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~-~s~~~~v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          154 PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGG-LSGTTKVTITLTDDYKDDDK  215 (215)
T ss_dssp             TTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTC-CEEEEEEEEEEEC-------
T ss_pred             CcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCC-ceeEEEEEEEEEECCCCCCC
Confidence            589999999999999 99999999999999999999876333 78999999999999999995

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.2e-38  Score=304.75  Aligned_cols=215  Identities=18%  Similarity=0.112  Sum_probs=184.9

Q ss_pred             cccccccceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEe------cCCCCCCCceEEECcccEEEECCcCCCCCC
Q psy8639          55 KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTS------LSPTDHSGAFDIDKSSGSLVVARQLDRETC  128 (570)
Q Consensus        55 ~f~~~~~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~------~~~~~~~~~F~id~~~G~l~~~~~LD~E~~  128 (570)
                      .|.+..|.++|+|++++|+.|+++.|+|+|.+   ..+.|+|..      .-.....+.|.|++.+|.|+++++||||..
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g---~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~   78 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPE---EVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSW   78 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTT---CCCCCEECSEEECGGGCEEEECCSEEECTTTCEEEESSCBCHHHH
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCC---CcceEEEeeccccceeccCCCCCEEEECCCcEEEEECCcCChhHh
Confidence            58999999999999999999999999999975   234455520      000014589999999999999999999999


Q ss_pred             CeE------------EEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCc----------CCCCceEEEEeCCCCCCeEE
Q psy8639         129 PEY------------KLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPR----------WGENPLTIPVNEDTLVGSTI  186 (570)
Q Consensus       129 ~~~------------~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~----------f~~~~~~~~v~E~~~~gt~v  186 (570)
                      ..|            .|+|+|+|.++..+.++++..|.|+|.|+|||+|+          |....|.+.|.|+.++|+.+
T Consensus        79 ~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v  158 (246)
T 2x2u_A           79 EKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFH  158 (246)
T ss_dssp             HHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCEEE
T ss_pred             hhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCCCCcEE
Confidence            999            99999999776333678889999999999999999          99999999999999999999


Q ss_pred             EEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEEC-CCCCCCCceeEEEEEEE
Q psy8639         187 WNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQ-AANISERLSTSLTARVV  265 (570)
Q Consensus       187 ~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~-~~~~~~~~~~~~~v~I~  265 (570)
                      +++.|+|+|.|.|+.++|+|..+.  .++|.|++.+|+|++.++||||....|.|+|.|+|. ++|   .++++++|.|+
T Consensus       159 ~~v~A~D~D~g~n~~i~Y~i~~~~--~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~p---~~ss~~~v~I~  233 (246)
T 2x2u_A          159 QFRLLPVQFLCPQISVAYRLLEGE--GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAR---EEVVMVPFPVT  233 (246)
T ss_dssp             ECSCHHHHHHCTTSCEEEEEESCT--TSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---C---CEEEEEEEEEE
T ss_pred             EEEEEEcCCCCCCcEEEEEEccCC--CCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCCC---cceEEEEEEEE
Confidence            999999999999999999999864  579999999999999999999999999999999983 443   38999999999


Q ss_pred             EeeCCCCCCeee
Q psy8639         266 VKDLNDNAPVFV  277 (570)
Q Consensus       266 V~dvNd~~P~~~  277 (570)
                      |.|+|||+|.|.
T Consensus       234 V~DvNDn~P~F~  245 (246)
T 2x2u_A          234 VYDEDDSAPEFE  245 (246)
T ss_dssp             EECSSCCSCCCC
T ss_pred             EEEeCCCCCccC
Confidence            999999999984

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=5.9e-36  Score=283.31  Aligned_cols=205  Identities=27%  Similarity=0.411  Sum_probs=188.5

Q ss_pred             CCCCcCCCCceE--EEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcceE
Q psy8639         162 DNAPRWGENPLT--IPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSF  239 (570)
Q Consensus       162 d~~P~f~~~~~~--~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~  239 (570)
                      |++|.|....|.  +.|.|++++|+.++++.|+|+|.   +.+.|+|..+.. .++|.|++.+|.|++.++||||....|
T Consensus         3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~---~~~~y~i~~~~~-~~~F~Id~~tG~i~~~~~LD~E~~~~y   78 (210)
T 3mvs_A            3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN---DPLVFGVSGEEA-SRFFAVEPDTGVVWLRQPLDRETKSEF   78 (210)
T ss_dssp             CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTC---CCCEEEEESHHH-HHHEEECTTTCEEEESSCCCTTTCCEE
T ss_pred             CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCC---CcEEEEEeCCCC-CCcEEEeCCCCEEEECCccCCcccceE
Confidence            459999998886  69999999999999999999994   468999987542 468999999999999999999999999


Q ss_pred             EEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCCCCCeEEEEEEEe
Q psy8639         240 ILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISG  319 (570)
Q Consensus       240 ~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~ysi~~  319 (570)
                      .|+|.|+|+++      ..++.+.|+|.|+|||+|.|....  |.+.|.|+.+.|+.++++.|+|+|.|.++.++|+|..
T Consensus        79 ~l~v~a~D~~~------~~~~~v~I~V~DvNDn~P~f~~~~--y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~  150 (210)
T 3mvs_A           79 TVEFSVSDHQG------VITRKVNIQVGDVNDNAPTFHNQP--YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQP  150 (210)
T ss_dssp             EEEEEEECSSC------EEEEEEEEEEECCCCCCCEECSCS--EEEEEETTCCTTCEEEECCEECCSSGGGGCEEEEESS
T ss_pred             EEEEEEEeCCC------CEEEEEEEEEEeCCCCCCcCCCce--EEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEeC
Confidence            99999999874      457899999999999999998877  8999999999999999999999999999999999986


Q ss_pred             CCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEECC-cCCceeEEEEEEEEeeCCCCC
Q psy8639         320 GNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHG-IPPKSSSLVINILSETVSTSL  383 (570)
Q Consensus       320 ~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g-~~~~s~~~~v~I~V~dvNd~~  383 (570)
                      +  .++|.|++.+|.|++.+.||   ||....|.|+|.|+|+| .|+++++++++|.|.|+||++
T Consensus       151 ~--~~~F~Id~~tG~i~~~~~LD---~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          151 P--SPFFAIDSARGIVTVIQELD---YEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             C--CSSEEECTTTCEEEECSCCC---TTTCSEEEEEEEEEECCSSSCCEEEEEEEEEEECCCCCC
T ss_pred             C--CCCEEEeCCcEEEEECCcCC---CcccceEEEEEEEEECCCCCCCEEEEEEEEEEEccCCCC
Confidence            4  57999999999999999999   99999999999999988 567999999999999999985

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=2.3e-35  Score=279.44  Aligned_cols=203  Identities=27%  Similarity=0.422  Sum_probs=177.1

Q ss_pred             eeEEEeccC--CCCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEE
Q psy8639         283 SLIYVSEQT--RVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASD  360 (570)
Q Consensus       283 ~~~~v~E~~--~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D  360 (570)
                      +.+.|.|+.  +.|+.++++ |+|+|.| ++.++|+|.++....+|.|++.+|.|++.+.||   ||....|.|+|.|+|
T Consensus         6 ~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LD---rE~~~~y~l~v~a~D   80 (215)
T 2a4e_A            6 NQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLD---REERAQYTLMAQAVD   80 (215)
T ss_dssp             CEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCC---TTTCSEEEEEEEEEE
T ss_pred             eeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECCCCCCeEEEECCceEEEECCccC---CccCCEEEEEEEEEE
Confidence            578999994  578999988 8999998 788999999875567999999999999999999   999999999999999


Q ss_pred             CCc-CCceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEE
Q psy8639         361 HGI-PPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIK  439 (570)
Q Consensus       361 ~g~-~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~  439 (570)
                      ++. +++++.++|.|.|.|+|||+|.|.+..|.+.|.|+.++|+.|+++.|+|+|..                       
T Consensus        81 ~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~D~D~~-----------------------  137 (215)
T 2a4e_A           81 RDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDP-----------------------  137 (215)
T ss_dssp             TTTCCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCEECSSCT-----------------------
T ss_pred             CCCCCcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEEEECCCC-----------------------
Confidence            875 56788999999999999999999999999999999999999999999999950                       


Q ss_pred             EEeeCCCceeEEEEEeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEc-ccCCccccceEEEEEEEEeCCC---CCeeE
Q psy8639         440 VVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLA-RSLDRETVDQYNLVVHVTDSKS---GDYDT  515 (570)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~-~~lD~E~~~~~~l~V~atD~~~---~~~~~  515 (570)
                           .           -|.++.++|+|..+.  ..|.|++.+|.|++. +.||||....|.|.|+|+|++.   +++++
T Consensus       138 -----~-----------~G~n~~i~Y~i~~~~--~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~  199 (215)
T 2a4e_A          138 -----T-----------YGNSAKLVYSILEGQ--PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGT  199 (215)
T ss_dssp             -----T-----------TCSSSCCEEEEEEST--TTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEE
T ss_pred             -----C-----------CCCceEEEEEEeCCC--CcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeE
Confidence                 0           046789999998763  689999999999999 9999999999999999999986   37899


Q ss_pred             EEEEEEEEecCCCCcc
Q psy8639         516 TNVFITILDVNDNAPE  531 (570)
Q Consensus       516 ~~v~I~V~dvNd~~P~  531 (570)
                      ++|+|+|.|+|||+|+
T Consensus       200 ~~v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          200 TKVTITLTDDYKDDDK  215 (215)
T ss_dssp             EEEEEEEEC-------
T ss_pred             EEEEEEEEECCCCCCC
Confidence            9999999999999995

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-37  Score=296.54  Aligned_cols=213  Identities=17%  Similarity=0.123  Sum_probs=185.7

Q ss_pred             cCCCCceEEEEeCCCCCCeEEEEeEEecCCCCC--CceEE------EEEEecCCCCCcEEEeCCCcEEEEcccCCccCcc
Q psy8639         166 RWGENPLTIPVNEDTLVGSTIWNFTATDADDGS--NGELR------YGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLT  237 (570)
Q Consensus       166 ~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~--~~~~~------y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~  237 (570)
                      .|.+..|.+.|.|++++|+.|+++.|+|+|.|.  +..+.      |++..+  ..++|.|++.+|.|++.++||||...
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~--~~~~F~Id~~tG~i~~~~~LDrE~~~   79 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLH--ENNWIRIQEDTGLLYLQRSLDHSSWE   79 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEE--ECCSEEECTTTCEEEESSCBCHHHHH
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCC--CCCEEEECCCcEEEEECCcCChhHhh
Confidence            478889999999999999999999999999754  44454      555544  24799999999999999999999999


Q ss_pred             eE------------EEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCe----------eecCCCCeeEEEeccCCCCe
Q psy8639         238 SF------------ILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV----------FVSPTRGSLIYVSEQTRVGS  295 (570)
Q Consensus       238 ~~------------~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~----------~~~~~~~~~~~v~E~~~~g~  295 (570)
                      .|            .|+|.|+|++.+... .+++++|.|+|.|+|||+|.          |....  |.+.|.|+.++|+
T Consensus        80 ~y~~~~~G~p~~~~~l~V~a~D~g~~~~~-~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~--y~~~v~En~~~Gt  156 (246)
T 2x2u_A           80 KLSVRNRGFPLLTVYLKVFLSPTSLREGE-CQWPGCARVYFSFFNTSFPACSSLKPRELCFPETR--PSFRIRENRPPGT  156 (246)
T ss_dssp             HHHHTSTTSCCCEEEEEEECC-------C-CCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSC--CCEEEEBTSCCCE
T ss_pred             hhccccCCCcccceEEEEEEEcCCCCCCc-ccceEEEEEEEEECCCCCCccccccccccccCCCc--EEEEEECCCCCCc
Confidence            99            999999999876322 67789999999999999999          98876  8999999999999


Q ss_pred             EEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEE-CCcCCceeEEEEEE
Q psy8639         296 HVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASD-HGIPPKSSSLVINI  374 (570)
Q Consensus       296 ~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D-~g~~~~s~~~~v~I  374 (570)
                      .++++.|+|+|.|.|+.++|+|..++ ..+|.|++.+|.|++.+.||   ||....|.|+|.|+| .|.|+++++++|.|
T Consensus       157 ~v~~v~A~D~D~g~n~~i~Y~i~~~~-~~~F~Id~~tG~i~~~~~LD---rE~~~~y~l~V~A~d~dg~p~~ss~~~v~I  232 (246)
T 2x2u_A          157 FHQFRLLPVQFLCPQISVAYRLLEGE-GLPFRSAPDSLEVSTRWALD---REQREKYELVAVCTVHAGAREEVVMVPFPV  232 (246)
T ss_dssp             EEECSCHHHHHHCTTSCEEEEEESCT-TSSEECCTTCCEEEESSCBC---TTTCSEEEEEEEEEEC---CCEEEEEEEEE
T ss_pred             EEEEEEEEcCCCCCCcEEEEEEccCC-CCCEEEECCcCEEEeCCccC---ccccceEEEEEEEEecCCCCcceEEEEEEE
Confidence            99999999999999999999999874 78999999999999999999   999999999999998 66688999999999


Q ss_pred             EEeeCCCCCCeec
Q psy8639         375 LSETVSTSLPTFL  387 (570)
Q Consensus       375 ~V~dvNd~~P~f~  387 (570)
                      .|.|+|||+|.|.
T Consensus       233 ~V~DvNDn~P~F~  245 (246)
T 2x2u_A          233 TVYDEDDSAPEFE  245 (246)
T ss_dssp             EEECSSCCSCCCC
T ss_pred             EEEEeCCCCCccC
Confidence            9999999999996

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=8e-34  Score=269.20  Aligned_cols=203  Identities=31%  Similarity=0.440  Sum_probs=180.2

Q ss_pred             ceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCC-CCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEeC
Q psy8639          62 NNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDT  140 (570)
Q Consensus        62 ~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~-~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D~  140 (570)
                      .++|+||++ |+.++++.+.|.|.+ .++.++|+|.+... ....+.|.|++.+|.|+++++||||....|.|+|+|+|.
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~-~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~   83 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRD-KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDI   83 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGG-GTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCC-CCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEEC
Confidence            468999999 888888889888877 68999999943211 124689999999999999999999999999999999997


Q ss_pred             CCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCC--CCCceEEEEEEecCC---CCCc
Q psy8639         141 STSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADD--GSNGELRYGLVRQYP---EGNH  215 (570)
Q Consensus       141 ~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~--g~~~~~~y~l~~~~~---~~~~  215 (570)
                      ++  +.++.+..|+|+|.|+|||+|.|....|.+.|.|+.+.|+.++++.|+|+|.  |.|+.++|+|..+.+   ..+.
T Consensus        84 g~--~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~  161 (215)
T 2qvi_A           84 NG--NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNM  161 (215)
T ss_dssp             TT--CCCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTTC
T ss_pred             CC--CceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCe
Confidence            76  6788999999999999999999999999999999999999999999999997  789999999998764   3579


Q ss_pred             EEEeCCCcEEEEc-ccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         216 FSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       216 F~Id~~~G~i~~~-~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      |.|++.+|.|++. ++||||....|.|.|.|+|.++++...++++++|.|+|.|
T Consensus       162 F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~V~D  215 (215)
T 2qvi_A          162 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  215 (215)
T ss_dssp             EEECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEEECC
T ss_pred             EEEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceEEEEEEEEEC
Confidence            9999999999995 7999999999999999999987633237899999999986

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=2.6e-33  Score=265.86  Aligned_cols=198  Identities=30%  Similarity=0.449  Sum_probs=177.0

Q ss_pred             ceeecCCCC--CCeEEEEEEEEcCCCCCCCceEEEEEEecCC-CCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEE
Q psy8639          62 NNEIKEDVP--IGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRAL  138 (570)
Q Consensus        62 ~~~v~E~~~--~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~-~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~  138 (570)
                      .++|+||.+  .|+.|+++.| |.|   .++.++|+|.+... .+..+.|.|++.+|.|++.++||||....|.|+|+|+
T Consensus         6 ~~~V~En~~~~~~~~v~~v~a-D~d---~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~   81 (213)
T 3qrb_A            6 AISCPENEKGEFPKNLVQIKS-NRD---KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV   81 (213)
T ss_dssp             EEEEETTCCSSSSEEEEECCC-GGG---GTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEE-CCC---CCceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEE
Confidence            468999998  7899999999 877   47899999954221 2345699999999999999999999999999999999


Q ss_pred             eCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCC---CCceEEEEEEecCC---C
Q psy8639         139 DTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG---SNGELRYGLVRQYP---E  212 (570)
Q Consensus       139 D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g---~~~~~~y~l~~~~~---~  212 (570)
                      |.++  +.++.+..++|+|.|+|||+|.|....|.+.|.|+.+.|+.++++.|+|+|.|   .|+.++|+|..+.+   .
T Consensus        82 D~~~--~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~  159 (213)
T 3qrb_A           82 SSNG--EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPH  159 (213)
T ss_dssp             ETTS--CBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTSSTTCCEEEEEEEESCCSC
T ss_pred             eCCC--CcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEEeCCCCCCCcCcEEEEEEccCCCCCCc
Confidence            9776  56788899999999999999999999999999999999999999999999988   88999999998754   3


Q ss_pred             CCcEEEeCCCcEEEEc-ccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         213 GNHFSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       213 ~~~F~Id~~~G~i~~~-~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      .+.|.|++.+|.|++. ++||||....|.|.|.|+|.+++.   ++++++|.|+|.|
T Consensus       160 ~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~---~s~t~~v~I~V~D  213 (213)
T 3qrb_A          160 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG---LSTTAKAVITVKD  213 (213)
T ss_dssp             SCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTS---CEEEEEEEEEEEC
T ss_pred             CCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCC---ceEEEEEEEEEEC
Confidence            4699999999999997 799999999999999999988764   8999999999986

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=1.3e-32  Score=261.96  Aligned_cols=199  Identities=34%  Similarity=0.474  Sum_probs=175.5

Q ss_pred             ceeecCCCCCC--eEEEEEEEEcCCCCCCCceEEEEEEecC-CCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEE
Q psy8639          62 NNEIKEDVPIG--FTVGNVVSTDSTGRAGGGHVMYSLTSLS-PTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRAL  138 (570)
Q Consensus        62 ~~~v~E~~~~g--t~v~~l~a~D~D~~~~~~~~~ysi~~~~-~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~  138 (570)
                      .++|+||.+.|  +.++++.|+|+|     ..++|+|.+.. ..+..+.|.|++.+|.|+++++||||....|.|+|+|+
T Consensus         7 ~~~V~En~~~g~~~~v~~v~a~D~d-----~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~   81 (218)
T 3k5r_A            7 PILIPENQRQPFPRDVGKVVDSDRP-----EGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT   81 (218)
T ss_dssp             CEEEETTCCSSCCEEEEECBCTTCC-----TTCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEE
T ss_pred             cEEEecCCCCCCCEEEEEEEecCCC-----ceEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEE
Confidence            46899999988  889999998876     27899995432 23456899999999999999999999999999999999


Q ss_pred             eCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCC--CCCceEEEEEEecCCCC---
Q psy8639         139 DTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADD--GSNGELRYGLVRQYPEG---  213 (570)
Q Consensus       139 D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~--g~~~~~~y~l~~~~~~~---  213 (570)
                      |.++  +.++++..|+|+|.|+|||+|.|....|.+.|.|+++.|+.++++.|+|+|.  |.|+.++|+|..+.+..   
T Consensus        82 D~g~--~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~  159 (218)
T 3k5r_A           82 DASG--KTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSP  159 (218)
T ss_dssp             CSSS--CEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCSCSSSSCGGGGCEEEEEEEEESCCSCS
T ss_pred             ECCC--CceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcC
Confidence            9765  6688999999999999999999999999999999999999999999999998  78999999999876532   


Q ss_pred             CcEEEeCCCcEEEEc---ccCCccC--cceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         214 NHFSVDHLTGTLTLL---QPLDYET--LTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       214 ~~F~Id~~~G~i~~~---~~lD~e~--~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      ++|.|++.+|.|++.   ++||||.  ...|.|.|.|+|+++... .++++++|+|+|.|
T Consensus       160 ~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p-~~sst~~v~I~V~D  218 (218)
T 3k5r_A          160 NMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDV-GLTGTATATIVIDD  218 (218)
T ss_dssp             CSEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTT-TCEEEEEEEEEEEC
T ss_pred             CEEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCC-CeeEEEEEEEEEEC
Confidence            689999999999987   6999999  669999999999983221 28999999999986

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=6.4e-32  Score=253.88  Aligned_cols=193  Identities=23%  Similarity=0.389  Sum_probs=171.2

Q ss_pred             cceeecCCCCCC--eEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEE
Q psy8639          61 SNNEIKEDVPIG--FTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRAL  138 (570)
Q Consensus        61 ~~~~v~E~~~~g--t~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~  138 (570)
                      ..++|+||.+.|  +.++++. +|+|.+   .. +|+|.+   ....+.|.|++.+|.|+++++||||....|.|+|+|+
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g---~~-~Y~i~~---~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~   76 (203)
T 3ppe_A            5 NRMHIREEIDSPLPHHVGKLT-SSVGNK---NA-MYIIEG---ESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHII   76 (203)
T ss_dssp             SEEEEETTCCSSSCEEEEECC-BCCCCT---TE-EEEEEE---TTBTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEE
T ss_pred             ccEEEEccCCCCCCEEEEEEE-ecCCCC---Cc-EEEEec---CCCCCeEEEECCcCEEEECccccccccceEEEEEEEE
Confidence            346899999988  8999998 999966   33 999943   3445799999999999999999999999999999999


Q ss_pred             eCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCC---CCCCceEEEEEEecCCCCCc
Q psy8639         139 DTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDAD---DGSNGELRYGLVRQYPEGNH  215 (570)
Q Consensus       139 D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~g~~~~~~y~l~~~~~~~~~  215 (570)
                      |.+++ +.++++..++|+|.|+|||+|.|....|.+.|.|+.+.|+.++++.|+|+|   .|.|+.++|+|..+.   ..
T Consensus        77 D~g~~-~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~~---~~  152 (203)
T 3ppe_A           77 DRRNN-RSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN---EY  152 (203)
T ss_dssp             ETTTT-EECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTSSSTTCEEEEEEEST---TT
T ss_pred             ECCCC-CcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcCCCcCCCCceEEEEEEeCCC---Cc
Confidence            97652 357788999999999999999999999999999999999999999999999   578999999999864   49


Q ss_pred             EEEeCCCcEEEEc-ccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         216 FSVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       216 F~Id~~~G~i~~~-~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      |.|+ .+|.|++. ++||||....|.|.|.|+|.++.+  .++++++|.|+|.|
T Consensus       153 F~I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p--~~s~t~~v~I~V~D  203 (203)
T 3ppe_A          153 FTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLT--GESSTATVIIRLTD  203 (203)
T ss_dssp             EEEC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCC--CSSSEEEEEEEEEC
T ss_pred             EEEe-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCC--CCeEEEEEEEEEEC
Confidence            9999 89999999 999999999999999999984432  27889999999986

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=1.7e-32  Score=260.00  Aligned_cols=197  Identities=24%  Similarity=0.318  Sum_probs=180.3

Q ss_pred             EEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecC---CCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECC
Q psy8639         173 TIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQA  249 (570)
Q Consensus       173 ~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~---~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~  249 (570)
                      .+.|+|+++ |+.++.+.+.|.|.+.++.++|+|.++.   +..+.|.|++.+|.|++.++||||....|.|+|.|+|.+
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g   84 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   84 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECC
Confidence            578999998 8888899999999888999999999753   235799999999999999999999999999999999998


Q ss_pred             CCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCC--CCCeEEEEEEEeCC----CC
Q psy8639         250 ANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDS--GDNGRVTYVISGGN----ED  323 (570)
Q Consensus       250 ~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~--~~~~~i~ysi~~~~----~~  323 (570)
                      ++.   +++++.+.|+|.|+|||+|.|....  |.+.|.|+++.|+.++++.|+|+|.  +.|+.++|+|..++    ..
T Consensus        85 ~~~---~~~~~~v~I~V~DvNDn~P~F~~~~--y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~  159 (215)
T 2qvi_A           85 GNQ---VENPIDIVINVIDMNDNRPEFLHQV--WNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSP  159 (215)
T ss_dssp             TCC---CEEEEEEEEEEECCCCCCCBCSSSE--EEEEECSSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEECSSCCSST
T ss_pred             CCc---eeeeEEEEEEEeECCCCCCcccCce--eEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcC
Confidence            864   7889999999999999999998876  8999999999999999999999998  78999999999876    46


Q ss_pred             CcEEEecCCCEEEEE-eecCcccccceeEEEEEEEEEECCcC---CceeEEEEEEEEee
Q psy8639         324 ARFHLDHDKGILSLA-RVISEYDHQSKFRAVLNITASDHGIP---PKSSSLVINILSET  378 (570)
Q Consensus       324 ~~F~id~~tG~l~~~-~~ld~~d~e~~~~~~l~V~a~D~g~~---~~s~~~~v~I~V~d  378 (570)
                      +.|.|++.+|.|++. +.||   ||....|.|.|.|+|+|.|   +++++++|.|+|.|
T Consensus       160 ~~F~Id~~tG~i~~~~~~LD---~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~V~D  215 (215)
T 2qvi_A          160 NMFTINNETGDIITVAAGLD---REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  215 (215)
T ss_dssp             TCEEECTTTCEEEECSCCCC---TTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEEECC
T ss_pred             CeEEEcCCCcEEEEecCCCC---cccCCeEEEEEEEEECCCCCCCCcceEEEEEEEEEC
Confidence            899999999999995 7898   9999999999999999877   78999999999986

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=5.5e-33  Score=262.32  Aligned_cols=196  Identities=28%  Similarity=0.422  Sum_probs=168.3

Q ss_pred             ceeecCCCCCC--eEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEe
Q psy8639          62 NNEIKEDVPIG--FTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALD  139 (570)
Q Consensus        62 ~~~v~E~~~~g--t~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D  139 (570)
                      .++|+||.+.+  +.++++ |+|+|.+  ++.++|+|  . +....+.|.|++.+|.|+++++||||....|.|+|+|+|
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g--~~~i~Y~l--~-~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D   79 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRG--DGSLKYIL--S-GDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVN   79 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCS--STTBCCCC--C-SSSBTTTEEECTTTCEEEECSCCCGGGCCEEEC----CB
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCC--CceEEEEE--E-CCCCCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEE
Confidence            35799998854  688888 8999987  56799999  2 234456999999999999999999999999999999999


Q ss_pred             CCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCC---CCCceEEEEEEecCCCCCcE
Q psy8639         140 TSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADD---GSNGELRYGLVRQYPEGNHF  216 (570)
Q Consensus       140 ~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~---g~~~~~~y~l~~~~~~~~~F  216 (570)
                      .++. ++++.+..++|+|.|+|||+|.|....|.+.|.|+.+.|+.++++.|+|+|.   |.|+.++|+|..+.   ..|
T Consensus        80 ~~~~-~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~~---~~F  155 (207)
T 3lnd_A           80 RRTG-RPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQ---PYF  155 (207)
T ss_dssp             SSSC-CCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEECSSCTTSSSTTCCEEEEEESG---GGE
T ss_pred             CCCC-CccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCCCcEEEEEEcCCC---CCE
Confidence            7632 5578888999999999999999999999999999999999999999999997   88899999999864   499


Q ss_pred             EEeCCCcEEEEc-ccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         217 SVDHLTGTLTLL-QPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       217 ~Id~~~G~i~~~-~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      .|++.+|.|++. ++||||....|.|.|.|+|+++++.+ ++++++|+|+|.|
T Consensus       156 ~Id~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~-~s~t~~v~I~V~D  207 (207)
T 3lnd_A          156 SVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGG-LSGTTTVNITLTD  207 (207)
T ss_dssp             EECTTTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTC-BEEEEEEEEEEEC
T ss_pred             EEcCCCcEEEECcccCCcccCCEEEEEEEEEECCCCCCC-cEeEEEEEEEEeC
Confidence            999999999999 99999999999999999999865333 7999999999986

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=1.6e-31  Score=251.11  Aligned_cols=190  Identities=23%  Similarity=0.358  Sum_probs=175.4

Q ss_pred             eeEEEeccCCCC--eEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEE
Q psy8639         283 SLIYVSEQTRVG--SHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASD  360 (570)
Q Consensus       283 ~~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D  360 (570)
                      ..+.|.|+.+.|  ..++++. +|+|.|.+   +|+|.+++..++|.|++.+|.|++.+.||   ||....|.|+|.|+|
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~~~~~~~F~Id~~tG~i~~~~~LD---rE~~~~y~l~v~a~D   77 (203)
T 3ppe_A            5 NRMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEGESANTIFKVQGYDGDIYAFERLD---REKKAEYELTAHIID   77 (203)
T ss_dssp             SEEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEETTBTTTEEEETTTTEEEESSCCC---TTTCCEEEEEEEEEE
T ss_pred             ccEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEecCCCCCeEEEECCcCEEEECcccc---ccccceEEEEEEEEE
Confidence            468999999988  8889988 99998776   99999887788999999999999999999   999999999999999


Q ss_pred             CCcC-CceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCC---CCCCceEEEEEEeeccCCCceE
Q psy8639         361 HGIP-PKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPS---TYGNYVYTEVFLVSEDAIPGTY  436 (570)
Q Consensus       361 ~g~~-~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~~~~~~~~~~v~~~~~~~~~  436 (570)
                      +|.| ++++.+.|.|.|.|+|||+|.|....|.+.|.|++++|+.|+++.|+|+|   .                     
T Consensus        78 ~g~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~---------------------  136 (203)
T 3ppe_A           78 RRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTV---------------------  136 (203)
T ss_dssp             TTTTEECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTS---------------------
T ss_pred             CCCCCcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcCCCcCC---------------------
Confidence            9876 57888999999999999999999999999999999999999999999999   4                     


Q ss_pred             EEEEEeeCCCceeEEEEEeecCCCceEEEEecCCCCCCcEEEeCCCcEEEEc-ccCCccccceEEEEEEEEeCCC--CCe
Q psy8639         437 IIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLA-RSLDRETVDQYNLVVHVTDSKS--GDY  513 (570)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~-~~lD~E~~~~~~l~V~atD~~~--~~~  513 (570)
                                           +.++.++|+|.++.  ..|.|+ .+|.|++. +.||||....|.|.|+|+|+++  +++
T Consensus       137 ---------------------g~n~~i~Y~i~~~~--~~F~I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s  192 (203)
T 3ppe_A          137 ---------------------AGHATVTYQIIKGN--EYFTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTGES  192 (203)
T ss_dssp             ---------------------SSTTCEEEEEEEST--TTEEEC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCCSS
T ss_pred             ---------------------CCceEEEEEEeCCC--CcEEEe-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCCCe
Confidence                                 67889999998764  599999 89999999 9999999999999999999854  578


Q ss_pred             eEEEEEEEEEe
Q psy8639         514 DTTNVFITILD  524 (570)
Q Consensus       514 ~~~~v~I~V~d  524 (570)
                      ++++|+|+|.|
T Consensus       193 ~t~~v~I~V~D  203 (203)
T 3ppe_A          193 STATVIIRLTD  203 (203)
T ss_dssp             SEEEEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            99999999987

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=5.6e-32  Score=256.74  Aligned_cols=194  Identities=24%  Similarity=0.400  Sum_probs=177.3

Q ss_pred             eeEEEeccCC--CCeEEEEEEEEeCCCCCCeEEEEEEEeC----CCCCcEEEecCCCEEEEEeecCcccccceeEEEEEE
Q psy8639         283 SLIYVSEQTR--VGSHVTKMTAVDQDSGDNGRVTYVISGG----NEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNI  356 (570)
Q Consensus       283 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~i~ysi~~~----~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V  356 (570)
                      ..+.|.|+.+  .++.++++.| |.|.  ++.++|+|.+.    +..++|.|++.+|.|++.+.||   ||....|.|+|
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LD---rE~~~~y~l~v   78 (213)
T 3qrb_A            5 AAISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLD---REAIAKYILYS   78 (213)
T ss_dssp             EEEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCC---TTTCSEEEEEE
T ss_pred             CCEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccC---cccCceEEEEE
Confidence            3689999998  6788999998 7775  88899999974    3356999999999999999999   99999999999


Q ss_pred             EEEECCcCCceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceE
Q psy8639         357 TASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTY  436 (570)
Q Consensus       357 ~a~D~g~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~  436 (570)
                      .|+|++.+++++.++|.|.|.|+|||+|.|.+..|.+.|.|++++|+.|+++.|+|+|.                     
T Consensus        79 ~a~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~---------------------  137 (213)
T 3qrb_A           79 HAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADD---------------------  137 (213)
T ss_dssp             EEEETTSCBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSC---------------------
T ss_pred             EEEeCCCCcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEEeCCC---------------------
Confidence            99999988889999999999999999999999999999999999999999999999999                     


Q ss_pred             EEEEEeeCCCceeEEEEEeecC---CCceEEEEecCCC----CCCcEEEeCCCcEEEEc-ccCCccccceEEEEEEEEeC
Q psy8639         437 IIKVVARSPSTYVYHMYLISDF---SGYNLTYMIPAGV----ADDMFKIDAETGVVTLA-RSLDRETVDQYNLVVHVTDS  508 (570)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~y~i~~~~----~~~~F~Id~~tG~i~~~-~~lD~E~~~~~~l~V~atD~  508 (570)
                                           +   .|+.++|+|.++.    ..+.|.|++.+|.|++. +.||||....|.|.|+|+|+
T Consensus       138 ---------------------~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~  196 (213)
T 3qrb_A          138 ---------------------DVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADL  196 (213)
T ss_dssp             ---------------------TTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETG
T ss_pred             ---------------------CCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeC
Confidence                                 6   7889999997654    35789999999999997 79999999999999999998


Q ss_pred             CC-CCeeEEEEEEEEEe
Q psy8639         509 KS-GDYDTTNVFITILD  524 (570)
Q Consensus       509 ~~-~~~~~~~v~I~V~d  524 (570)
                      ++ +++++++|+|+|.|
T Consensus       197 g~~~~s~t~~v~I~V~D  213 (213)
T 3qrb_A          197 QGEGLSTTAKAVITVKD  213 (213)
T ss_dssp             GGTSCEEEEEEEEEEEC
T ss_pred             CCCCceEEEEEEEEEEC
Confidence            76 78999999999987

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=99.98  E-value=3.8e-31  Score=251.91  Aligned_cols=195  Identities=24%  Similarity=0.344  Sum_probs=175.7

Q ss_pred             eEEEEeCCCCCC--eEEEEeEEecCCCCCCceEEEEEEecC---CCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEE
Q psy8639         172 LTIPVNEDTLVG--STIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVT  246 (570)
Q Consensus       172 ~~~~v~E~~~~g--t~v~~v~a~D~D~g~~~~~~y~l~~~~---~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~  246 (570)
                      ..+.|.|+.+.|  +.++++.|.|.|.    .++|+|....   ...+.|.|++.+|.|++.++||||....|.|+|.|+
T Consensus         6 ~~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~   81 (218)
T 3k5r_A            6 SPILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT   81 (218)
T ss_dssp             CCEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEE
T ss_pred             CcEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEE
Confidence            367899999988  8899999998874    6999998642   225799999999999999999999999999999999


Q ss_pred             ECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCC--CCCeEEEEEEEeCCCC-
Q psy8639         247 DQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDS--GDNGRVTYVISGGNED-  323 (570)
Q Consensus       247 D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~--~~~~~i~ysi~~~~~~-  323 (570)
                      |.+++.   +++++.+.|+|.|+|||+|.|....  |.+.|.|+++.|+.++++.|+|+|.  +.|+.++|+|..+... 
T Consensus        82 D~g~~~---~~~~~~v~I~V~DvNDn~P~F~~~~--y~~~v~E~~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~  156 (218)
T 3k5r_A           82 DASGKT---LEGPVPLEVIVIDQNDNRPIFREGP--YIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDK  156 (218)
T ss_dssp             CSSSCE---EEEEEEEEEEEECTTCCCCCCCSCS--EEEEEETTCCTTCEEEECCCSCSSSSCGGGGCEEEEEEEEESCC
T ss_pred             ECCCCc---eeeeEEEEEEEEeCCCCCCcccCCc--eEEEEECCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCC
Confidence            988764   7889999999999999999998877  8999999999999999999999998  6799999999976543 


Q ss_pred             ---CcEEEecCCCEEEEE---eecCcccccc--eeEEEEEEEEEECC--cCCceeEEEEEEEEee
Q psy8639         324 ---ARFHLDHDKGILSLA---RVISEYDHQS--KFRAVLNITASDHG--IPPKSSSLVINILSET  378 (570)
Q Consensus       324 ---~~F~id~~tG~l~~~---~~ld~~d~e~--~~~~~l~V~a~D~g--~~~~s~~~~v~I~V~d  378 (570)
                         ++|.|++.+|.|++.   +.||   ||.  ...|.|.|.|+|+|  .|+++++++|+|+|.|
T Consensus       157 ~~~~~F~Id~~tG~i~~~~~~~~LD---~E~~~~~~y~l~V~a~D~gg~~p~~sst~~v~I~V~D  218 (218)
T 3k5r_A          157 PSPNMFYIDPEKGDIVTVVSPALLD---RETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD  218 (218)
T ss_dssp             SCSCSEEECTTTCEEEECSCGGGCC---GGGCSCSEEEEEEEEEECSSTTTTCEEEEEEEEEEEC
T ss_pred             CcCCEEEEECCccEEEEeccCCCCC---ccccCCCeEEEEEEEEECCCCCCCeeEEEEEEEEEEC
Confidence               689999999999987   5788   999  77999999999999  8899999999999986

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=99.97  E-value=1.6e-31  Score=252.22  Aligned_cols=193  Identities=25%  Similarity=0.385  Sum_probs=167.7

Q ss_pred             EEEEeCCCCCC--eEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECCC
Q psy8639         173 TIPVNEDTLVG--STIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAA  250 (570)
Q Consensus       173 ~~~v~E~~~~g--t~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~  250 (570)
                      ++.|.|+.+.+  +.++++ |+|+|.| ++.++|+|..+. ..++|.|++.+|.|++.++||||....|.|+|.|+|+++
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~   82 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSGDG-AGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRT   82 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCSSS-BTTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSSS
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEECCC-CCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECCC
Confidence            56899998855  588888 9999988 678999998654 246999999999999999999999999999999999874


Q ss_pred             -CCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCC---CCCeEEEEEEEeCCCCCcE
Q psy8639         251 -NISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDS---GDNGRVTYVISGGNEDARF  326 (570)
Q Consensus       251 -~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~---~~~~~i~ysi~~~~~~~~F  326 (570)
                       ++   ++.++.+.|+|.|+|||+|.|....  |.+.|.|+++.|+.++++.|+|+|.   |.|+.++|+|..+  ..+|
T Consensus        83 ~~~---~~~~~~v~I~V~DvNDn~P~F~~~~--y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~--~~~F  155 (207)
T 3lnd_A           83 GRP---VEPESEFIIKIHDINDNEPIFTKDV--YTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG--QPYF  155 (207)
T ss_dssp             CCC---CSCCCCCEEEEECCSCCCCEESCSE--EEEEEESSCCTTCEEEECCEECSSCTTSSSTTCCEEEEEES--GGGE
T ss_pred             CCc---cccEEEEEEEECccCCCCCccCCCc--eEEEEeCCCCCCCEEEEEEEEeCCCCCCCCCcEEEEEEcCC--CCCE
Confidence             32   6778899999999999999999876  8999999999999999999999998   7888999999986  4599


Q ss_pred             EEecCCCEEEEE-eecCcccccceeEEEEEEEEEECCcC--CceeEEEEEEEEee
Q psy8639         327 HLDHDKGILSLA-RVISEYDHQSKFRAVLNITASDHGIP--PKSSSLVINILSET  378 (570)
Q Consensus       327 ~id~~tG~l~~~-~~ld~~d~e~~~~~~l~V~a~D~g~~--~~s~~~~v~I~V~d  378 (570)
                      .|++.+|.|++. +.||   ||....|.|.|.|+|+|.|  +++++++|+|+|.|
T Consensus       156 ~Id~~tG~i~~~~~~lD---~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~I~V~D  207 (207)
T 3lnd_A          156 SVESETGIIKTALLNMD---RENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD  207 (207)
T ss_dssp             EECTTTCEEEECCSSCC---C--CCEEEEEEEEESGGGCTTCBEEEEEEEEEEEC
T ss_pred             EEcCCCcEEEECcccCC---cccCCEEEEEEEEEECCCCCCCcEeEEEEEEEEeC
Confidence            999999999998 8899   9999999999999999876  78999999999986

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.96  E-value=3.6e-29  Score=240.47  Aligned_cols=204  Identities=26%  Similarity=0.339  Sum_probs=167.8

Q ss_pred             cceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEEC---CcCCCCCCCeEEEEEEE
Q psy8639          61 SNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVA---RQLDRETCPEYKLEVRA  137 (570)
Q Consensus        61 ~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~---~~LD~E~~~~~~l~v~a  137 (570)
                      +.++|+|+++.|+.+..+.+.+.+....+..++|+|..    .....|.|++.+|.+++.   +.||||....|.+.+.+
T Consensus        22 ~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~----~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~   97 (242)
T 4apx_B           22 TIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKD----NVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQ   97 (242)
T ss_dssp             EEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEES----CGGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEE
T ss_pred             EEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEec----CCCceEEECCCCCEEEEEecCCceeccCCCceEEEEEE
Confidence            45679999999999887555544433278899999932    346789999999999875   67999998776555444


Q ss_pred             EeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEE-----eEEecCCCCCCceEEEEEEecCCC
Q psy8639         138 LDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWN-----FTATDADDGSNGELRYGLVRQYPE  212 (570)
Q Consensus       138 ~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~-----v~a~D~D~g~~~~~~y~l~~~~~~  212 (570)
                      .+.............|+|.|.|+|||+|+|....|.+.|.|+.++|+.|.+     +.|+|+|.|.|+.++|+|..+...
T Consensus        98 v~~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~  177 (242)
T 4apx_B           98 VQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPED  177 (242)
T ss_dssp             EEEEETTTCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTTS
T ss_pred             EEeECCCCCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCCC
Confidence            442222234567788999999999999999999999999999999999976     789999999999999999986542


Q ss_pred             ---CCcEEEeC-CCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         213 ---GNHFSVDH-LTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       213 ---~~~F~Id~-~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                         .+.|.|++ .+|.|++.++||||....|.|.|+|+|+|+++..++++.+.|+|+|+-
T Consensus       178 ~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          178 PTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDLEH  237 (242)
T ss_dssp             TTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEECCSSGGGCCEEEEEEEEEEEC
T ss_pred             cccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEECCcCchhcccCCceEEEEEee
Confidence               24799985 589999999999999999999999999998876667888999999875

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.95  E-value=6.4e-27  Score=224.81  Aligned_cols=197  Identities=22%  Similarity=0.316  Sum_probs=164.8

Q ss_pred             ceEEEEeCCCCCCeEEEEeEEec-CCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEc---ccCCccCcceEEEEE---
Q psy8639         171 PLTIPVNEDTLVGSTIWNFTATD-ADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLL---QPLDYETLTSFILVV---  243 (570)
Q Consensus       171 ~~~~~v~E~~~~gt~v~~v~a~D-~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~---~~lD~e~~~~~~l~v---  243 (570)
                      .+.+.|.|+++.|+.+..+.+.+ .|.+.++.++|+|.+..  ..+|.|++.+|.+.+.   +.||+|....|.+.+   
T Consensus        21 ~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~~--~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v   98 (242)
T 4apx_B           21 ATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNV--DYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQV   98 (242)
T ss_dssp             SEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESCG--GGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEE
T ss_pred             eEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecCC--CceEEECCCCCEEEEEecCCceeccCCCceEEEEEEE
Confidence            46789999999999988755544 45778899999998753  4689999999999875   679999977665444   


Q ss_pred             EEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEE-----EEEEeCCCCCCeEEEEEEE
Q psy8639         244 KVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTK-----MTAVDQDSGDNGRVTYVIS  318 (570)
Q Consensus       244 ~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~-----v~a~D~D~~~~~~i~ysi~  318 (570)
                      .+.+....    ....+.|.|.|.|+|||+|.|....  |.+.|.|++++|+.|.+     +.|+|+|.|.|+.++|+|.
T Consensus        99 ~~~~~~~~----~~~~~~V~I~V~DvNDn~P~F~~~~--y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~  172 (242)
T 4apx_B           99 QCVNKKVG----TVIYHEVRIVVRDRNDNSPTFKHES--YYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ  172 (242)
T ss_dssp             EEEETTTC----CEEEEEEEEEEECCCCCCCEESSSC--EEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEE
T ss_pred             EeECCCCC----eEEEEEEEEEEEeCCCCCCccccee--eeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEe
Confidence            44454321    5667889999999999999999887  89999999999999976     7899999999999999999


Q ss_pred             eCCCC----CcEEEec-CCCEEEEEeecCcccccceeEEEEEEEEEECCcCC---ceeEEEEEEEEee
Q psy8639         319 GGNED----ARFHLDH-DKGILSLARVISEYDHQSKFRAVLNITASDHGIPP---KSSSLVINILSET  378 (570)
Q Consensus       319 ~~~~~----~~F~id~-~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g~~~---~s~~~~v~I~V~d  378 (570)
                      .+...    +.|.|+. .+|.|++.+.||   ||....|.|.|.|+|+|.|+   +++.++|+|+|.-
T Consensus       173 ~~~~~~~~~~~F~Id~~~tG~i~~~~~LD---~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          173 YNPEDPTSNDTFEIPLMLTGNVVLRKRLN---YEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDLEH  237 (242)
T ss_dssp             CCTTSTTHHHHEECSSTTTCCEEECSCCC---TTTCCEEEEEEEEEECCSSGGGCCEEEEEEEEEEEC
T ss_pred             cCCCCcccccceEEcCCCceEEEECCcCC---hhhCCEEEEEEEEEECCcCchhcccCCceEEEEEee
Confidence            87543    4699985 589999999999   99999999999999999874   6788888888864

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=1.7e-24  Score=185.13  Aligned_cols=117  Identities=26%  Similarity=0.379  Sum_probs=108.9

Q ss_pred             EEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCC-CCcEEEeCCCcEEEEcccCCc
Q psy8639         155 IEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPE-GNHFSVDHLTGTLTLLQPLDY  233 (570)
Q Consensus       155 I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~-~~~F~Id~~~G~i~~~~~lD~  233 (570)
                      ++|.|+|||+|.|....|.+.|.|+++.|+.++++.|+|+|.|.|+.++|+|..+... .++|.|++.+|.|++.++|||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~   81 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR   81 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCT
T ss_pred             CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCc
Confidence            5689999999999999999999999999999999999999999999999999876422 358999999999999999999


Q ss_pred             cCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCC
Q psy8639         234 ETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAP  274 (570)
Q Consensus       234 e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P  274 (570)
                      |....|.|+|.|+|++.+.   ++++++|.|+|.|+|||+|
T Consensus        82 E~~~~y~l~V~A~D~g~p~---~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           82 EEVNQLRFTVMARDRGQPP---KTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             TTCSEEEEEEEECCSBTTB---CCEEEEEEEEEECSTTCCC
T ss_pred             ccCCEEEEEEEEEECCCCC---cEEEEEEEEEEEeccCCCC
Confidence            9999999999999998764   7899999999999999998

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=5.2e-24  Score=182.07  Aligned_cols=115  Identities=25%  Similarity=0.423  Sum_probs=107.6

Q ss_pred             EEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEE
Q psy8639         374 ILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMY  453 (570)
Q Consensus       374 I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (570)
                      ++|.|+|||+|.|.+..|.+.|.|++++|+.|+++.|+|+|.                                      
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~--------------------------------------   43 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDV--------------------------------------   43 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSS--------------------------------------
T ss_pred             CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCC--------------------------------------
Confidence            468999999999999999999999999999999999999999                                      


Q ss_pred             EeecCCCceEEEEecCCCC--CCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCC-CCeeEEEEEEEEEecCCCCc
Q psy8639         454 LISDFSGYNLTYMIPAGVA--DDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS-GDYDTTNVFITILDVNDNAP  530 (570)
Q Consensus       454 ~~~~~~~~~~~y~i~~~~~--~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~-~~~~~~~v~I~V~dvNd~~P  530 (570)
                          +.++.++|+|..+..  .++|.|++.+|.|++++.||||....|.|+|+|+|++. +++++++|+|+|.|+|||+|
T Consensus        44 ----g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           44 ----GVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             ----SCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred             ----CCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence                889999999987643  36899999999999999999999999999999999987 57899999999999999998

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=3.6e-22  Score=168.94  Aligned_cols=111  Identities=30%  Similarity=0.418  Sum_probs=101.9

Q ss_pred             EEEeeCCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCC--CCCcEEEeCCCcEEEEcccCC
Q psy8639         155 IEIVDVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYP--EGNHFSVDHLTGTLTLLQPLD  232 (570)
Q Consensus       155 I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~--~~~~F~Id~~~G~i~~~~~lD  232 (570)
                      |+|.|+|||+|.|....|.+.|.|+.++|+.++++.|+|+|.|.|+.++|+|....+  ..++|.|++.+|.|++.++||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD   81 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLD   81 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCC
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCC
Confidence            578999999999999999999999999999999999999999999999999986321  246899999999999999999


Q ss_pred             ccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCC
Q psy8639         233 YETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLN  270 (570)
Q Consensus       233 ~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvN  270 (570)
                      ||....|.|+|.|+|++++     .++++|.|+|.|+|
T Consensus        82 ~E~~~~y~l~V~A~D~g~~-----~~~~~v~I~V~DvN  114 (114)
T 2ee0_A           82 REETAIHKVTVLASDGSST-----PARATVTINVTDVN  114 (114)
T ss_dssp             TTTCSEEEEEEEEESSSSS-----CEEEEEEEEEECCC
T ss_pred             cccCcEEEEEEEEEECCCC-----ceEEEEEEEEEECC
Confidence            9999999999999999874     37789999999997

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=4.9e-22  Score=168.12  Aligned_cols=110  Identities=26%  Similarity=0.378  Sum_probs=101.6

Q ss_pred             EEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEE
Q psy8639         374 ILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMY  453 (570)
Q Consensus       374 I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (570)
                      |+|.|+|||+|.|.+..|.+.|.|++++|+.|+++.|+|+|.                                      
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~--------------------------------------   43 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADI--------------------------------------   43 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSS--------------------------------------
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCC--------------------------------------
Confidence            468999999999999999999999999999999999999999                                      


Q ss_pred             EeecCCCceEEEEecCC---CCCCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCCCCeeEEEEEEEEEecC
Q psy8639         454 LISDFSGYNLTYMIPAG---VADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVN  526 (570)
Q Consensus       454 ~~~~~~~~~~~y~i~~~---~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~~~~~~~~v~I~V~dvN  526 (570)
                          +.++.++|+|...   ...++|.|++.+|.|+++++||||....|.|+|.|+|++. ..++++|+|+|+|+|
T Consensus        44 ----g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~-~~~~~~v~I~V~DvN  114 (114)
T 2ee0_A           44 ----GSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSS-TPARATVTINVTDVN  114 (114)
T ss_dssp             ----CCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEEESSSS-SCEEEEEEEEEECCC
T ss_pred             ----CCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCCcccCcEEEEEEEEEECCC-CceEEEEEEEEEECC
Confidence                8899999999763   2356899999999999999999999999999999999985 348899999999998

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=3.7e-20  Score=158.62  Aligned_cols=115  Identities=24%  Similarity=0.348  Sum_probs=101.6

Q ss_pred             cccccccccccceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecC-CCCCCCceEEECcccEEEECCcCCCCCCC
Q psy8639          51 VSRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLS-PTDHSGAFDIDKSSGSLVVARQLDRETCP  129 (570)
Q Consensus        51 ~~~p~f~~~~~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~-~~~~~~~F~id~~~G~l~~~~~LD~E~~~  129 (570)
                      .++|.|....|++.+.|++++|+.|+++. +|+|.+ .|+.++|+|.+.. .....+.|.|++.+|.|+++++||||...
T Consensus         7 r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g-~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~   84 (123)
T 2yqg_A            7 GQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEE-RGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETP   84 (123)
T ss_dssp             CSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHH-HTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTTBS
T ss_pred             ccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCC-CCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCcccCc
Confidence            46789999999999999999999999999 699877 6789999995421 11346899999999999999999999999


Q ss_pred             eEEEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCC
Q psy8639         130 EYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGE  169 (570)
Q Consensus       130 ~~~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~  169 (570)
                      .|.|+|+|+|.++  +.+++++.|.|+|.|+|||+|.|..
T Consensus        85 ~y~l~V~A~D~g~--p~~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           85 FFLLTGYALDARG--NNVEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             EEEEEEEEECTTC--CEEEEEECCEEEEECTTCCCCCCCC
T ss_pred             eEEEEEEEEECCC--CceEEEEEEEEEEEEcCCCCCEeCC
Confidence            9999999999765  6788999999999999999999975

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=1.1e-19  Score=155.73  Aligned_cols=115  Identities=25%  Similarity=0.347  Sum_probs=104.4

Q ss_pred             CCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecC---CCCCcEEEeCCCcEEEEcccCCccCc
Q psy8639         160 VNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTGTLTLLQPLDYETL  236 (570)
Q Consensus       160 vNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~---~~~~~F~Id~~~G~i~~~~~lD~e~~  236 (570)
                      .+.+.|.|....+.+.+.|+.+.|+.|+++. +|.|.|.|+.++|+|..+.   +..+.|.|++.+|.|++.++||||..
T Consensus         5 ~~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~   83 (123)
T 2yqg_A            5 SSGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREET   83 (123)
T ss_dssp             SSCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTTB
T ss_pred             ccccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCcccC
Confidence            3578999999999999999999999999999 6999988999999999863   23579999999999999999999999


Q ss_pred             ceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeec
Q psy8639         237 TSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVS  278 (570)
Q Consensus       237 ~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~  278 (570)
                      ..|.|+|.|+|.+.+.   +++++.|.|+|.|+|||+|.|..
T Consensus        84 ~~y~l~V~A~D~g~p~---~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           84 PFFLLTGYALDARGNN---VEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             SEEEEEEEEECTTCCE---EEEEECCEEEEECTTCCCCCCCC
T ss_pred             ceEEEEEEEEECCCCc---eEEEEEEEEEEEEcCCCCCEeCC
Confidence            9999999999998764   78899999999999999999964

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.75  E-value=2e-18  Score=144.85  Aligned_cols=104  Identities=27%  Similarity=0.404  Sum_probs=79.2

Q ss_pred             ccccceeecCCCCCCeE--EEEEEEEcCCCCCCCceEEEEEEecC-CCCCCCceEEECcccEEEECCcCCCCCCCeEEEE
Q psy8639          58 KYLSNNEIKEDVPIGFT--VGNVVSTDSTGRAGGGHVMYSLTSLS-PTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLE  134 (570)
Q Consensus        58 ~~~~~~~v~E~~~~gt~--v~~l~a~D~D~~~~~~~~~ysi~~~~-~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~  134 (570)
                      +-.|.++|+||+++|+.  |+++   |.|.+ .++.++|+|.+.. ..+..+.|.|++.+|.|+++++||||....|.|+
T Consensus         4 W~~~~~~v~En~~~gt~~~v~~v---d~D~g-~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~   79 (110)
T 1ncg_A            4 WVIPPINLPENSRGPFPQELVRI---RSGRD-KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLR   79 (110)
T ss_dssp             CCCCCEEECSSCCCCSSEEEEEC---CCGGG-GGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEE
T ss_pred             cEeeeEEEeCCCCCCCcEEEEEE---eCCCC-CCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEE
Confidence            34578899999999994  5555   56666 6899999994321 1245689999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcC
Q psy8639         135 VRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRW  167 (570)
Q Consensus       135 v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f  167 (570)
                      |+|+|.++  +.+++++.|.|.|.|+|||+|.|
T Consensus        80 V~A~D~g~--p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           80 AHAVDING--NQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             EEEECTTS--CBCSCCEEEEEEEC---------
T ss_pred             EEEEECCC--CceeeEEEEEEEEEECCCCCCCC
Confidence            99999766  67889999999999999999987

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.72  E-value=1.4e-17  Score=139.60  Aligned_cols=100  Identities=25%  Similarity=0.380  Sum_probs=79.4

Q ss_pred             ceEEEEeCCCCCCeE--EEEeEEecCCCCCCceEEEEEEecC---CCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEE
Q psy8639         171 PLTIPVNEDTLVGST--IWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKV  245 (570)
Q Consensus       171 ~~~~~v~E~~~~gt~--v~~v~a~D~D~g~~~~~~y~l~~~~---~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a  245 (570)
                      .|.++|.|+++.|+.  ++++   |.|.|.|+.++|+|..+.   ...+.|.|++.+|.|++.++||||....|.|+|.|
T Consensus         6 ~~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A   82 (110)
T 1ncg_A            6 IPPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHA   82 (110)
T ss_dssp             CCCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEE
T ss_pred             eeeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEE
Confidence            467899999999995  5555   677778999999999742   23579999999999999999999999999999999


Q ss_pred             EECCCCCCCCceeEEEEEEEEeeCCCCCCee
Q psy8639         246 TDQAANISERLSTSLTARVVVKDLNDNAPVF  276 (570)
Q Consensus       246 ~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~  276 (570)
                      +|++.+.   +++++.+.|+|.|+|||+|.|
T Consensus        83 ~D~g~p~---~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           83 VDINGNQ---VENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             ECTTSCB---CSCCEEEEEEEC---------
T ss_pred             EECCCCc---eeeEEEEEEEEEECCCCCCCC
Confidence            9998764   788999999999999999987

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=6.4e-18  Score=144.68  Aligned_cols=107  Identities=23%  Similarity=0.273  Sum_probs=89.6

Q ss_pred             ccccceeecCCCCCCeEEEEEEEEcCCCCCCCceE---EEEEEecCCCCCCCceEEECcccEEEECCcCCCCCC----Ce
Q psy8639          58 KYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHV---MYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETC----PE  130 (570)
Q Consensus        58 ~~~~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~---~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~----~~  130 (570)
                      ...|..+|+|++++|+.|+++ |+|.|.+  ...+   +|+|.  .+ +..+.|.|++.+|.|+++++||||+.    ..
T Consensus        10 ~~~~~~~V~E~~~~Gt~V~~v-a~D~d~~--~~~i~~~~Y~i~--~~-~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~   83 (125)
T 1wyj_A           10 SATITYSVLEETDRGSLVGNL-AKDLGLS--LRELITRGAQIL--SK-GNKQLLQLEQKSGNLLLKEKLDREELCGSTNP   83 (125)
T ss_dssp             CCCCCEEECSSCCTTCEEEES-TTTTTCC--HHHHHHTTCEEE--CS-SSSCSEEECSSSSEEEESSCCCSTTTCTTCSS
T ss_pred             CceEEEEEECCCCCCCEEEEE-EecCCCC--CCceeeEEEEEe--cC-CCCCeEEEECCccEEEECccccchhhcccCCc
Confidence            345778999999999999999 8998854  2345   89993  32 45689999999999999999999999    99


Q ss_pred             EEEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEE
Q psy8639         131 YKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIP  175 (570)
Q Consensus       131 ~~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~  175 (570)
                      |.|.|+|.+..   + . ....|.|+|+|+|||+|.|....|.++
T Consensus        84 y~l~v~a~~~~---p-~-~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           84 CILHFQVLLKS---P-V-QFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             CCBCCEEEETT---T-T-EEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             EEEEEEEEECC---C-C-eEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence            99999999832   2 3 477899999999999999999888654

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.67  E-value=1.6e-17  Score=142.27  Aligned_cols=107  Identities=21%  Similarity=0.220  Sum_probs=91.6

Q ss_pred             CeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCCceE---EE
Q psy8639         389 PSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNL---TY  465 (570)
Q Consensus       389 ~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y  465 (570)
                      ..+.+.|.|+.++|+.|++| |+|.|.                                          +. +.+   .|
T Consensus        11 ~~~~~~V~E~~~~Gt~V~~v-a~D~d~------------------------------------------~~-~~i~~~~Y   46 (125)
T 1wyj_A           11 ATITYSVLEETDRGSLVGNL-AKDLGL------------------------------------------SL-RELITRGA   46 (125)
T ss_dssp             CCCCEEECSSCCTTCEEEES-TTTTTC------------------------------------------CH-HHHHHTTC
T ss_pred             ceEEEEEECCCCCCCEEEEE-EecCCC------------------------------------------CC-CceeeEEE
Confidence            45678999999999999999 999887                                          32 334   89


Q ss_pred             EecCCCCCCcEEEeCCCcEEEEcccCCcccc----ceEEEEEEEEeCCCCCeeEEEEEEEEEecCCCCcccccCCeeeEE
Q psy8639         466 MIPAGVADDMFKIDAETGVVTLARSLDRETV----DQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPIT  541 (570)
Q Consensus       466 ~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~----~~~~l~V~atD~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~~  541 (570)
                      +|.++...+.|.||+.+|.|++.+.||||..    ..|.|.|+|.+.. +. ...+|.|+|.|+|||+|+|. +..|.++
T Consensus        47 ~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v~a~~~~-p~-~~~~V~I~V~DvNDN~P~F~-~~~y~vs  123 (125)
T 1wyj_A           47 QILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKS-PV-QFIQGEIQLQDVNDHAPEFM-EDESGPS  123 (125)
T ss_dssp             EEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCCEEEETT-TT-EEECCCEEECCCCCCCCCCC-CCCCCCC
T ss_pred             EEecCCCCCeEEEECCccEEEECccccchhhcccCCcEEEEEEEEECC-CC-eEEEEEEEEEEccCCCCcCC-CcEEEEe
Confidence            9987767789999999999999999999999    9999999999855 44 57889999999999999999 7777654


Q ss_pred             e
Q psy8639         542 I  542 (570)
Q Consensus       542 v  542 (570)
                      +
T Consensus       124 ~  124 (125)
T 1wyj_A          124 S  124 (125)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.61  E-value=5e-15  Score=120.99  Aligned_cols=92  Identities=22%  Similarity=0.291  Sum_probs=81.8

Q ss_pred             ceEEEEeCCCC--CCeEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEEC
Q psy8639         171 PLTIPVNEDTL--VGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQ  248 (570)
Q Consensus       171 ~~~~~v~E~~~--~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~  248 (570)
                      .+.+.|.||.+  .|+.++++. +|+|.| |+.++|+|..+.. .+.|.|++.+|.|++.++||||....|.|+|.|+|+
T Consensus         5 ~~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~-~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~   81 (99)
T 1zvn_A            5 WNQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGA-GIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDR   81 (99)
T ss_dssp             CCEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTB-TTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEET
T ss_pred             ccEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCC-CceEEEeCCCCCEEECeecCCccCCeEEEEEEEEEC
Confidence            35789999976  689999999 999999 9999999987543 468999999999999999999999999999999999


Q ss_pred             C-CCCCCCceeEEEEEEEEee
Q psy8639         249 A-ANISERLSTSLTARVVVKD  268 (570)
Q Consensus       249 ~-~~~~~~~~~~~~v~I~V~d  268 (570)
                      + +++   +++++.|.|+|.|
T Consensus        82 G~~p~---l~~~~~v~I~V~D   99 (99)
T 1zvn_A           82 RTGRP---MEPESEFIIKIQD   99 (99)
T ss_dssp             TTCCB---SSCCEEEEEEEEC
T ss_pred             CCCCC---cceeEEEEEEEeC
Confidence            8 454   7889999999986

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.61  E-value=3.3e-15  Score=122.41  Aligned_cols=92  Identities=29%  Similarity=0.454  Sum_probs=80.0

Q ss_pred             cceeecCCCCC--CeEEEEEEEEcCCCCCCCceEEEEEEecC-CCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEE
Q psy8639          61 SNNEIKEDVPI--GFTVGNVVSTDSTGRAGGGHVMYSLTSLS-PTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRA  137 (570)
Q Consensus        61 ~~~~v~E~~~~--gt~v~~l~a~D~D~~~~~~~~~ysi~~~~-~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a  137 (570)
                      +.++|+||.++  |+.|+++.|+|+|.     .++|+|.+.. ..+..+.|.|++.+|.|+++++||||+...|.|+|+|
T Consensus         5 ~~~~V~En~~~~~g~~v~~v~A~D~D~-----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A   79 (99)
T 3k6d_A            5 PSISIPENQRIPFPKIVGRVVVSDRIP-----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVET   79 (99)
T ss_dssp             CCEEEETTCCSCSSEEEEECBCSSCCT-----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEE
T ss_pred             CcEEEeCCCCCCCCcEEEEEEEECCCC-----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEE
Confidence            45689999999  99999999999883     6999995421 2345689999999999999999999999999999999


Q ss_pred             EeCCCCCCCceeEEEEEEEEee
Q psy8639         138 LDTSTSSNPQSSAVAIKIEIVD  159 (570)
Q Consensus       138 ~D~~g~~~~~s~~~~v~I~V~d  159 (570)
                      +|.++  +.++++..|+|+|.|
T Consensus        80 ~D~g~--~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           80 TDENG--KTIEGPVDLEILVID   99 (99)
T ss_dssp             ECTTC--CEEEEEEEEEEEEEC
T ss_pred             EECCC--CceeeEEEEEEEEEC
Confidence            99766  678889999999986

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.61  E-value=3.3e-15  Score=122.08  Aligned_cols=91  Identities=21%  Similarity=0.303  Sum_probs=83.6

Q ss_pred             eeEEEeccCC--CCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEE
Q psy8639         283 SLIYVSEQTR--VGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASD  360 (570)
Q Consensus       283 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D  360 (570)
                      +.+.|.||.+  .|+.++++. +|+|.| |+.++|+|.++...+.|.|++.+|.|++.++||   ||....|.|+|.|+|
T Consensus         6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LD---rE~~~~y~l~V~A~D   80 (99)
T 1zvn_A            6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLD---REERSQYTLRAQALD   80 (99)
T ss_dssp             CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCC---TTTCSEEEEEEEEEE
T ss_pred             cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCCEEECeecC---CccCCeEEEEEEEEE
Confidence            4689999976  689999999 999999 999999999875567899999999999999999   999999999999999


Q ss_pred             CC-cCCceeEEEEEEEEee
Q psy8639         361 HG-IPPKSSSLVINILSET  378 (570)
Q Consensus       361 ~g-~~~~s~~~~v~I~V~d  378 (570)
                      +| .|++++.++|.|.|.|
T Consensus        81 ~G~~p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           81 RRTGRPMEPESEFIIKIQD   99 (99)
T ss_dssp             TTTCCBSSCCEEEEEEEEC
T ss_pred             CCCCCCcceeEEEEEEEeC
Confidence            98 4889999999999986

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.60  E-value=3.5e-15  Score=121.74  Aligned_cols=91  Identities=19%  Similarity=0.306  Sum_probs=81.5

Q ss_pred             eeEEEeccCC--CCeEEEEEEEEeCCCCCCeEEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEEEEE
Q psy8639         283 SLIYVSEQTR--VGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASD  360 (570)
Q Consensus       283 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D  360 (570)
                      +.+.|.||.+  .|+.++++. +|+|.| |+.++|+|.++...+.|.|++.+|.|++.++||   ||....|.|+|.|+|
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LD---rE~~~~y~l~v~A~D   79 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLD---REEKAEYTLTAQAVD   79 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTTTCEEEECSCCC---TTTCSEEEEEEEEEE
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccEEEECccCC---CcCCCeEEEEEEEEE
Confidence            4689999995  899999997 999999 999999999865567899999999999999999   999999999999999


Q ss_pred             CCc-CCceeEEEEEEEEee
Q psy8639         361 HGI-PPKSSSLVINILSET  378 (570)
Q Consensus       361 ~g~-~~~s~~~~v~I~V~d  378 (570)
                      +|. |++++.++|.|.|.|
T Consensus        80 ~g~~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           80 FETNKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             TTTCCBSSCCEEEEEEECC
T ss_pred             CCCCCCcceeEEEEEEEEC
Confidence            987 778999999999976

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.59  E-value=8.3e-15  Score=119.53  Aligned_cols=91  Identities=22%  Similarity=0.300  Sum_probs=79.2

Q ss_pred             eEEEEeCCCC--CCeEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECC
Q psy8639         172 LTIPVNEDTL--VGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQA  249 (570)
Q Consensus       172 ~~~~v~E~~~--~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~  249 (570)
                      +.+.|.||.+  .|+.++++. +|+|.| |+.++|+|..+.. .+.|.|++.+|.|++.++||||....|.|+|.|+|++
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~-~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g   81 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGA-GTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFE   81 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTB-TTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCC-CCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECC
Confidence            5789999985  899999997 999999 9999999987532 4589999999999999999999999999999999998


Q ss_pred             C-CCCCCceeEEEEEEEEee
Q psy8639         250 A-NISERLSTSLTARVVVKD  268 (570)
Q Consensus       250 ~-~~~~~~~~~~~v~I~V~d  268 (570)
                      . ++   +++++.+.|.|.|
T Consensus        82 ~~~~---l~~~~~v~I~V~D   98 (98)
T 1zxk_A           82 TNKP---LEPPSEFIIKVQD   98 (98)
T ss_dssp             TCCB---SSCCEEEEEEECC
T ss_pred             CCCC---cceeEEEEEEEEC
Confidence            6 43   7888999999876

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.57  E-value=1e-14  Score=120.82  Aligned_cols=97  Identities=26%  Similarity=0.342  Sum_probs=79.5

Q ss_pred             ccccceeecCCCC--CCeEEEEEEEEcCCCCCCCceEEEEEEecCC-CCCCCceEEECcccEEEECCcCCCCCCCeEEEE
Q psy8639          58 KYLSNNEIKEDVP--IGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDRETCPEYKLE  134 (570)
Q Consensus        58 ~~~~~~~v~E~~~--~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~-~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~  134 (570)
                      +....++|+||++  .|+.|+++.|.+   + .|+.++|+|.+... ....+.|.|++.+|.|+++++||||++..|.|+
T Consensus         6 w~~~~~~V~En~~~~~~~~v~~v~Ad~---g-~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~   81 (105)
T 2omz_B            6 WVIPPISCPENEKGPFPKNLVQIKSNK---D-KEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLF   81 (105)
T ss_dssp             EECCCCCEESSCCSSSSEEEEECEEGG---G-GSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEE
T ss_pred             EEccCEEEeCCCCCCCCcEEEEEECCC---C-CCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEE
Confidence            3444578999999  588999999933   3 58999999954221 112468999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCceeEEEEEEEEeeC
Q psy8639         135 VRALDTSTSSNPQSSAVAIKIEIVDV  160 (570)
Q Consensus       135 v~a~D~~g~~~~~s~~~~v~I~V~dv  160 (570)
                      |+|+|.++  +.+++++.|.|.|.|+
T Consensus        82 V~A~D~g~--p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           82 SHAVSSNG--NAVEDPMEILITVTDQ  105 (105)
T ss_dssp             EEEECTTS--CBSSCCEEEEEEEEC-
T ss_pred             EEEEECCC--CceeeEEEEEEEEEeC
Confidence            99999766  6788999999999985

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.57  E-value=1.5e-14  Score=118.66  Aligned_cols=91  Identities=32%  Similarity=0.463  Sum_probs=79.2

Q ss_pred             ceeecCCCCC--CeEEEEEEEEcCCCCCCCceEEEEEEecC-CCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEE
Q psy8639          62 NNEIKEDVPI--GFTVGNVVSTDSTGRAGGGHVMYSLTSLS-PTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRAL  138 (570)
Q Consensus        62 ~~~v~E~~~~--gt~v~~l~a~D~D~~~~~~~~~ysi~~~~-~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~  138 (570)
                      .++|+||.+.  |+.|+++.|+|+|.     .++|+|.+.. ..+..+.|.|++.+|.|++.++||||+...|.|+|+|+
T Consensus         7 ~~~V~EN~~~~~g~~v~~V~A~D~D~-----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~   81 (100)
T 3k6f_A            7 PILIPENQRQPFPRDVGKVVDSDRPE-----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT   81 (100)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCT-----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEE
T ss_pred             cEEEeCCCCCCCCcEEEEEEEEcCCC-----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEE
Confidence            4589999998  89999999999983     5899995432 12446899999999999999999999999999999999


Q ss_pred             eCCCCCCCceeEEEEEEEEee
Q psy8639         139 DTSTSSNPQSSAVAIKIEIVD  159 (570)
Q Consensus       139 D~~g~~~~~s~~~~v~I~V~d  159 (570)
                      |.++  +.+++...|.|.|.|
T Consensus        82 D~g~--p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           82 DASG--KTLEGPVPLEVIVID  100 (100)
T ss_dssp             CTTC--CEEEEEEEEEEEEEC
T ss_pred             ECCC--CcccceEEEEEEEEC
Confidence            9766  778899999999986

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.57  E-value=2.2e-14  Score=117.51  Aligned_cols=90  Identities=31%  Similarity=0.464  Sum_probs=78.3

Q ss_pred             eeecCCCCCC--eEEEEEEEEcCCCCCCCceEEEEEEecC-CCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEe
Q psy8639          63 NEIKEDVPIG--FTVGNVVSTDSTGRAGGGHVMYSLTSLS-PTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALD  139 (570)
Q Consensus        63 ~~v~E~~~~g--t~v~~l~a~D~D~~~~~~~~~ysi~~~~-~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D  139 (570)
                      ++|+||.+.|  +.|+++.|+|+|.     .++|+|.+.. ..+..+.|.|++.+|.|+++++||||+...|.|+|+|+|
T Consensus         7 ~~v~EN~~~g~~~~v~~V~A~D~D~-----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D   81 (99)
T 3k6i_A            7 ILIPENQRPPFPRSVGKVIRSEGTE-----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD   81 (99)
T ss_dssp             EEEETTCCSSSCEEEEECEETTCCS-----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEE
T ss_pred             EEEeCCCCCCCCeEEEEEEEEcCCC-----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEE
Confidence            4799999986  9999999999983     7999995321 123468999999999999999999999999999999999


Q ss_pred             CCCCCCCceeEEEEEEEEee
Q psy8639         140 TSTSSNPQSSAVAIKIEIVD  159 (570)
Q Consensus       140 ~~g~~~~~s~~~~v~I~V~d  159 (570)
                      .++  +.+++...+.|.|.|
T Consensus        82 ~g~--~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           82 LSG--KIIDGPVRLDISVID   99 (99)
T ss_dssp             TTS--CEEEEEEEEEEEEEC
T ss_pred             CCC--CceeeeEEEEEEEEC
Confidence            766  778999999999986

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.54  E-value=1.8e-14  Score=117.97  Aligned_cols=89  Identities=15%  Similarity=0.239  Sum_probs=81.6

Q ss_pred             eeEEEeccCCC--CeEEEEEEEEeCCCCCCeEEEEEEEe----CCCCCcEEEecCCCEEEEEeecCcccccceeEEEEEE
Q psy8639         283 SLIYVSEQTRV--GSHVTKMTAVDQDSGDNGRVTYVISG----GNEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNI  356 (570)
Q Consensus       283 ~~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~i~ysi~~----~~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V  356 (570)
                      ..+.|.||.+.  |+.++++.|+|+|.    .++|+|.+    ++..+.|.|++.+|.|++.++||   ||....|.|+|
T Consensus         5 ~~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LD---rE~~~~y~l~V   77 (99)
T 3k6d_A            5 PSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD---REAIPSYQLQV   77 (99)
T ss_dssp             CCEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCC---TTTCCEEEEEE
T ss_pred             CcEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCC---cccCceEEEEE
Confidence            35899999999  99999999999996    59999985    33468999999999999999999   99999999999


Q ss_pred             EEEECCcCCceeEEEEEEEEee
Q psy8639         357 TASDHGIPPKSSSLVINILSET  378 (570)
Q Consensus       357 ~a~D~g~~~~s~~~~v~I~V~d  378 (570)
                      .|+|+|.|++++.++|.|.|.|
T Consensus        78 ~A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           78 ETTDENGKTIEGPVDLEILVID   99 (99)
T ss_dssp             EEECTTCCEEEEEEEEEEEEEC
T ss_pred             EEEECCCCceeeEEEEEEEEEC
Confidence            9999999999999999999986

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.52  E-value=5.2e-14  Score=115.48  Aligned_cols=88  Identities=15%  Similarity=0.297  Sum_probs=80.7

Q ss_pred             eEEEeccCCC--CeEEEEEEEEeCCCCCCeEEEEEEEeC----CCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEE
Q psy8639         284 LIYVSEQTRV--GSHVTKMTAVDQDSGDNGRVTYVISGG----NEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNIT  357 (570)
Q Consensus       284 ~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~i~ysi~~~----~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~  357 (570)
                      .+.|.||.+.  |+.++++.|+|+|.    .++|+|.+.    +..+.|.|++.+|.|++.++||   ||....|.|+|.
T Consensus         7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LD---rE~~~~y~l~V~   79 (100)
T 3k6f_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD---RETIATYQLYVE   79 (100)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCC---TTTCSEEEEEEE
T ss_pred             cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccC---CcCCCEEEEEEE
Confidence            5899999998  89999999999997    489999863    2457899999999999999999   999999999999


Q ss_pred             EEECCcCCceeEEEEEEEEee
Q psy8639         358 ASDHGIPPKSSSLVINILSET  378 (570)
Q Consensus       358 a~D~g~~~~s~~~~v~I~V~d  378 (570)
                      |+|+|.|++++.++|.|.|.|
T Consensus        80 A~D~g~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           80 TTDASGKTLEGPVPLEVIVID  100 (100)
T ss_dssp             EECTTCCEEEEEEEEEEEEEC
T ss_pred             EEECCCCcccceEEEEEEEEC
Confidence            999999999999999999986

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.52  E-value=5e-14  Score=116.61  Aligned_cols=91  Identities=19%  Similarity=0.327  Sum_probs=78.8

Q ss_pred             EEEEeCCCC--CCeEEEEeEEecCCCCCCceEEEEEEecCC---CCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEE
Q psy8639         173 TIPVNEDTL--VGSTIWNFTATDADDGSNGELRYGLVRQYP---EGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTD  247 (570)
Q Consensus       173 ~~~v~E~~~--~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~---~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D  247 (570)
                      .+.|.||.+  .++.++++.|.   .|.|+.++|+|..+..   +.+.|.|++.+|.|++.++||||....|.|+|.|+|
T Consensus        10 ~~~V~En~~~~~~~~v~~v~Ad---~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D   86 (105)
T 2omz_B           10 PISCPENEKGPFPKNLVQIKSN---KDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVS   86 (105)
T ss_dssp             CCCEESSCCSSSSEEEEECEEG---GGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred             CEEEeCCCCCCCCcEEEEEECC---CCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEE
Confidence            468999998  58899999993   3568999999998642   246899999999999999999999999999999999


Q ss_pred             CCCCCCCCceeEEEEEEEEeeC
Q psy8639         248 QAANISERLSTSLTARVVVKDL  269 (570)
Q Consensus       248 ~~~~~~~~~~~~~~v~I~V~dv  269 (570)
                      +++++   +++++.|.|+|.|+
T Consensus        87 ~g~p~---~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           87 SNGNA---VEDPMEILITVTDQ  105 (105)
T ss_dssp             TTSCB---SSCCEEEEEEEEC-
T ss_pred             CCCCc---eeeEEEEEEEEEeC
Confidence            99865   78899999999985

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.51  E-value=8.4e-14  Score=114.07  Aligned_cols=88  Identities=16%  Similarity=0.219  Sum_probs=80.6

Q ss_pred             eEEEeccCCCC--eEEEEEEEEeCCCCCCeEEEEEEEeC----CCCCcEEEecCCCEEEEEeecCcccccceeEEEEEEE
Q psy8639         284 LIYVSEQTRVG--SHVTKMTAVDQDSGDNGRVTYVISGG----NEDARFHLDHDKGILSLARVISEYDHQSKFRAVLNIT  357 (570)
Q Consensus       284 ~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~i~ysi~~~----~~~~~F~id~~tG~l~~~~~ld~~d~e~~~~~~l~V~  357 (570)
                      .+.|.||.+.|  +.++++.|+|+|.    .++|+|.+.    +..+.|.|++.+|.|++.++||   ||....|.|+|.
T Consensus         6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LD---rE~~~~y~l~v~   78 (99)
T 3k6i_A            6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLD---REAIANYELEVE   78 (99)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCC---TTTCCEEEEEEE
T ss_pred             cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccC---CccCCEEEEEEE
Confidence            48999999987  8999999999997    699999863    2457899999999999999999   999999999999


Q ss_pred             EEECCcCCceeEEEEEEEEee
Q psy8639         358 ASDHGIPPKSSSLVINILSET  378 (570)
Q Consensus       358 a~D~g~~~~s~~~~v~I~V~d  378 (570)
                      |+|+|.|++++.++|.|.|.|
T Consensus        79 A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           79 VTDLSGKIIDGPVRLDISVID   99 (99)
T ss_dssp             EEETTSCEEEEEEEEEEEEEC
T ss_pred             EEECCCCceeeeEEEEEEEEC
Confidence            999999999999999999986

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.28  E-value=1.1e-12  Score=108.09  Aligned_cols=93  Identities=20%  Similarity=0.339  Sum_probs=75.3

Q ss_pred             CeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCC--ceEEEE
Q psy8639         389 PSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSG--YNLTYM  466 (570)
Q Consensus       389 ~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~  466 (570)
                      ..+.+.|.|+.++|+.|++| |.|.|.                                          ..+  ..+.|+
T Consensus         3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~------------------------------------------~~~~~~~~~y~   39 (103)
T 1wuz_A            3 SQIHYSIPEEAKHGTFVGRI-AQDLGL------------------------------------------ELTELVPRLFR   39 (103)
T ss_dssp             CEEEEEEESSCCTTCBCCCH-HHHHTC------------------------------------------CHHHHTTTTBC
T ss_pred             eeEEEEEECCCCCCCEEEEE-EeccCC------------------------------------------CCcccccEEEE
Confidence            35678999999999999999 999876                                          211  357899


Q ss_pred             ecCCCCCCcEEEeCCCcEEEEcccCCccccc------eEEEEEEEEeCCCCCeeEEEEEEEEEecCCC
Q psy8639         467 IPAGVADDMFKIDAETGVVTLARSLDRETVD------QYNLVVHVTDSKSGDYDTTNVFITILDVNDN  528 (570)
Q Consensus       467 i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~------~~~l~V~atD~~~~~~~~~~v~I~V~dvNd~  528 (570)
                      |.++...++|.|++.+|.|++.++||||+..      .|.+.|.+  .. +. ....|.|.|.|+|||
T Consensus        40 i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~v~~--~~-p~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           40 VASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV--DR-PL-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             CBCSSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEEEEE--TT-TT-EEEEEEEEEECCSCC
T ss_pred             EEeCCCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEEEEE--CC-CC-EEEEEEEEEEEcCCC
Confidence            9877777899999999999999999999863      56666655  33 44 478899999999997

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.18  E-value=5.6e-12  Score=103.84  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=73.8

Q ss_pred             CceEEEEeCCCCCCeEEEEeEEecCCCCCC--ceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcc----eEEEEE
Q psy8639         170 NPLTIPVNEDTLVGSTIWNFTATDADDGSN--GELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLT----SFILVV  243 (570)
Q Consensus       170 ~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~--~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~----~~~l~v  243 (570)
                      ..+..+|+|+.+.|+.|+++ |.|.|.+.+  ..+.|+|.++.+ ..+|.|++.+|.|++.++||||...    .+.+.+
T Consensus         3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~-~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~   80 (103)
T 1wuz_A            3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDR-GDLLEVNLQNGILFVNSRIDREELCGRSAECSIHL   80 (103)
T ss_dssp             CEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSC-SCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEE
T ss_pred             eeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCC-ccEEEEECCeEEEEECCcCccccccCCCCcEEEEE
Confidence            35778999999999999999 999875322  358899987643 6799999999999999999999863    334444


Q ss_pred             EEEECCCCCCCCceeEEEEEEEEeeCCCC
Q psy8639         244 KVTDQAANISERLSTSLTARVVVKDLNDN  272 (570)
Q Consensus       244 ~a~D~~~~~~~~~~~~~~v~I~V~dvNd~  272 (570)
                      .+.... |    . ....|.|.|.|+|||
T Consensus        81 ~v~~~~-p----~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           81 EVIVDR-P----L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             EEEETT-T----T-EEEEEEEEEECCSCC
T ss_pred             EEEECC-C----C-EEEEEEEEEEEcCCC
Confidence            444332 2    2 378999999999996

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=94.82  E-value=1.2  Score=39.98  Aligned_cols=30  Identities=13%  Similarity=0.092  Sum_probs=23.7

Q ss_pred             ccceEEEEEEEEeCCCCCeeEEEEEEEEEe
Q psy8639         495 TVDQYNLVVHVTDSKSGDYDTTNVFITILD  524 (570)
Q Consensus       495 ~~~~~~l~V~atD~~~~~~~~~~v~I~V~d  524 (570)
                      ..+.|.|+++|+|..+..+.+..|+|+|.+
T Consensus       151 ~~G~~tl~a~A~D~aGn~s~s~~vtvtv~~  180 (190)
T 3pdd_A          151 VEGNHEISVIAYDDDDAASTPDSVKIFVKQ  180 (190)
T ss_dssp             CSEEEEEEEEEEETTCCBCCCEEEEEEEBC
T ss_pred             CCeeEEEEEEEEECCCCEEecceEEEEECC
Confidence            568899999999998744566778887754

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=93.44  E-value=3.4  Score=36.97  Aligned_cols=118  Identities=13%  Similarity=0.083  Sum_probs=64.5

Q ss_pred             CCCeEEEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCCceEEEEeCCCC----CCeEEEEeEEecCCCCCCceE
Q psy8639         127 TCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGENPLTIPVNEDTL----VGSTIWNFTATDADDGSNGEL  202 (570)
Q Consensus       127 ~~~~~~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~----~gt~v~~v~a~D~D~g~~~~~  202 (570)
                      ....|.|+++|+|..|.   .+....+.|.|.+  ..+|..     .+.-+.+..    .+.......|+|.|. .-..+
T Consensus        59 ~~G~htlta~A~D~aGn---~s~s~~v~vtV~~--~~~Ptv-----~itsP~~g~~~~~~~~vtl~~~AsD~~g-~V~~V  127 (190)
T 3pdd_A           59 AVGAYNLKAVAVLSDGR---RIESPVTPVLVKV--IVKPTV-----KLTAPKSNVVAYGNEFLKITATASDSDG-KISRV  127 (190)
T ss_dssp             CSEEEEEEEEEEETTSC---EEECCCEEEEEEC--CCCCEE-----EEEECCTTCCCBTTSEEEEEEEEECSSS-CEEEE
T ss_pred             CCccEEEEEEEEECCCC---EeeecceeEEecc--CCCCce-----eecCCCCCcEEecCCeEEEEEEEECCCC-cEEEE
Confidence            45699999999997762   2233346777765  336653     233333322    223445677777652 12344


Q ss_pred             EEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         203 RYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       203 ~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      .|.+..     ....-+. ++........   ....|+|+++|+|..|.    .+....+.|+|.+
T Consensus       128 e~~~dg-----~~v~t~t-~~~y~~~~~~---~~G~~tl~a~A~D~aGn----~s~s~~vtvtv~~  180 (190)
T 3pdd_A          128 DFLVDG-----EVIGSDR-EAPYEYEWKA---VEGNHEISVIAYDDDDA----ASTPDSVKIFVKQ  180 (190)
T ss_dssp             EEEETT-----EEEEEEC-SSSEEEEEEC---CSEEEEEEEEEEETTCC----BCCCEEEEEEEBC
T ss_pred             EEEECC-----EEEeccc-CCCEEEEEec---CCeeEEEEEEEEECCCC----EEecceEEEEECC
Confidence            444421     1111111 1111111111   45689999999999986    4456677777654

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=92.85  E-value=0.58  Score=40.47  Aligned_cols=79  Identities=19%  Similarity=0.280  Sum_probs=61.3

Q ss_pred             ccccccccccceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeE
Q psy8639          52 SRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEY  131 (570)
Q Consensus        52 ~~p~f~~~~~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~  131 (570)
                      -+|.|.++.|...++-....|..++.+.-.|..   .+..+.|..      .++..|.|+ .+|.|+.++++-.-. ..-
T Consensus        32 C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~---g~~~~~~~s------sDp~dFkV~-~DGtVya~r~v~L~~-~~~  100 (159)
T 1op4_A           32 CKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN---RKRKVQYES------SEPADFKVD-EDGTVYAVRSFPLTA-EQA  100 (159)
T ss_dssp             CCCBCCSCEEEECCCCSSCSSCCEEECCCBCCS---SCCCEEEEC------CCSSEEEEE-TTTEEEEESCCSCSS-SCE
T ss_pred             ccCCcCcceeEEeccccccCCceeceeecccCC---CCCceeEEc------CCCCCeEEe-CCCcEEEecceeecC-CCc
Confidence            468999999988888889999999999888875   457788876      334589999 689999998864322 233


Q ss_pred             EEEEEEEeCC
Q psy8639         132 KLEVRALDTS  141 (570)
Q Consensus       132 ~l~v~a~D~~  141 (570)
                      .|.|.|.|..
T Consensus       101 ~F~V~a~D~~  110 (159)
T 1op4_A          101 KFLIYAQDKE  110 (159)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEEcCC
Confidence            7889999943

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=92.43  E-value=5.2  Score=38.61  Aligned_cols=130  Identities=15%  Similarity=0.184  Sum_probs=65.3

Q ss_pred             CCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCCCCCeEEEEEEEeCCC--CCcEEEecCCCEEEEE---------
Q psy8639         270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNE--DARFHLDHDKGILSLA---------  338 (570)
Q Consensus       270 Nd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~ysi~~~~~--~~~F~id~~tG~l~~~---------  338 (570)
                      +|.++.|....  ....|.|+.  |+...+|.-.. +......+.|....+..  +.-|.-  .+|.|...         
T Consensus         6 dd~~g~i~F~~--~~y~V~E~~--g~v~vtV~R~g-~~~~~vtV~y~T~~GTA~ag~Dy~~--~~gtl~F~~Get~kti~   78 (298)
T 3rb5_A            6 ADDPIRMYFEP--GHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQDGTASAGTDFVG--RKGLLSFPPGVDEQRFR   78 (298)
T ss_dssp             -----CEEESS--SEEEEETTS--CCEECCEEECS-CCSSCEEEEEEEEESSSCBTTTBCC--CEEEEEECTTCCEECCE
T ss_pred             CCCceEEEEeC--CEEEEecCc--eEEEEEEEEEC-CCCccEEEEEEeeCCccCCCCCccc--cceEEEECCCceEEEEE
Confidence            35566776665  578899987  45544554443 44456678888877643  122321  12333321         


Q ss_pred             -eecCcccccceeEEEEEEEEEECCcCCceeEEEEEEEEeeCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEE
Q psy8639         339 -RVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVA  410 (570)
Q Consensus       339 -~~ld~~d~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a  410 (570)
                       .-++...+|....+.+.+.... +..........+|+|.| ||.+|.|........+.|+.  |.....|.-
T Consensus        79 V~I~dD~~~E~dEtF~v~Ls~p~-~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~R  147 (298)
T 3rb5_A           79 IEVIDDDVFEEDECFYIRLFNPS-EGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVMR  147 (298)
T ss_dssp             ECBCCCSSCCCCEEEEEEEECCC-TTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEEE
T ss_pred             EEEeCCCCccCcEEEEEEEeCCC-CCcEECCCceEEEEEec-cccccccccccccEEeecCC--ceEEEEEEE
Confidence             1223223455555555444321 11112222334555566 46788877666677888874  555555443

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=91.41  E-value=8  Score=37.30  Aligned_cols=145  Identities=18%  Similarity=0.242  Sum_probs=73.1

Q ss_pred             CCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCCC-CcEEEeCCCcEEEEc-----------
Q psy8639         161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEG-NHFSVDHLTGTLTLL-----------  228 (570)
Q Consensus       161 Nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~-~~F~Id~~~G~i~~~-----------  228 (570)
                      +|+++.|.-..-...|.|+.  |+....|.-+ .+......+.|....+.... .-|.  +.+|.|...           
T Consensus         6 dd~~g~i~F~~~~y~V~E~~--g~v~vtV~R~-g~~~~~vtV~y~T~~GTA~ag~Dy~--~~~gtl~F~~Get~kti~V~   80 (298)
T 3rb5_A            6 ADDPIRMYFEPGHYTVMENC--GEFEVRVVRR-GDISTYASVEYETQDGTASAGTDFV--GRKGLLSFPPGVDEQRFRIE   80 (298)
T ss_dssp             -----CEEESSSEEEEETTS--CCEECCEEEC-SCCSSCEEEEEEEEESSSCBTTTBC--CCEEEEEECTTCCEECCEEC
T ss_pred             CCCceEEEEeCCEEEEecCc--eEEEEEEEEE-CCCCccEEEEEEeeCCccCCCCCcc--ccceEEEECCCceEEEEEEE
Confidence            45566665555567899985  4443333322 23334457888877764322 1221  122333322           


Q ss_pred             --ccCCccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCC
Q psy8639         229 --QPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQD  306 (570)
Q Consensus       229 --~~lD~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D  306 (570)
                        ..--+|....|  .|..++..+..  ........+|+|.| ||.+|.|....  ....|.|+.  |.....|.-... 
T Consensus        81 I~dD~~~E~dEtF--~v~Ls~p~~~a--~lg~~~~atvtI~d-dD~~g~~~f~~--~~~~V~E~~--g~~~~~V~Rs~~-  150 (298)
T 3rb5_A           81 VIDDDVFEEDECF--YIRLFNPSEGV--KLAVPMIATVMILD-DDHAGIFAFTD--SVFEITESV--GRFELKVMRYSG-  150 (298)
T ss_dssp             BCCCSSCCCCEEE--EEEEECCCTTC--CBCSCSEEEEEEEC-CCCCCEEECSC--SEEEECTTC--CCEEEEEEEESC-
T ss_pred             EeCCCCccCcEEE--EEEEeCCCCCc--EECCCceEEEEEec-ccccccccccc--ccEEeecCC--ceEEEEEEEEec-
Confidence              11123444444  44445432111  13333456677777 45589887765  568899986  556556655443 


Q ss_pred             CCCCeEEEEEEEeC
Q psy8639         307 SGDNGRVTYVISGG  320 (570)
Q Consensus       307 ~~~~~~i~ysi~~~  320 (570)
                      ......+.|+...+
T Consensus       151 ~~g~vtV~~~T~dG  164 (298)
T 3rb5_A          151 ARGTVIVPYWTEND  164 (298)
T ss_dssp             CCSCEEEEEEEEEC
T ss_pred             CCCCEEEEEEecCC
Confidence            22344677776665

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=90.83  E-value=1.4  Score=44.79  Aligned_cols=68  Identities=15%  Similarity=0.114  Sum_probs=48.1

Q ss_pred             EeCCCCCCeEEEEEEEeCCCC----CcEEEe-cCCCEEEEEeecCcccccceeEEEEEEEEEECCcCCceeEEEEEEEEe
Q psy8639         303 VDQDSGDNGRVTYVISGGNED----ARFHLD-HDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINILSE  377 (570)
Q Consensus       303 ~D~D~~~~~~i~ysi~~~~~~----~~F~id-~~tG~l~~~~~ld~~d~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~  377 (570)
                      +|+|   +..++|+.......    ....|. ..+..+.+..+.    ......+.|.++++|++.|+.++...|.|+|.
T Consensus       365 sDPD---GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~----~~~~~tl~f~LtVTD~~~p~lTs~~rViVtV~  437 (437)
T 2yhg_A          365 SDPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPS----NAGGKDIHILLTLRDNGSPNLYAYRRVVINVQ  437 (437)
T ss_dssp             BCTT---CCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCT----TCTTCEEEEEEEEEECSSSCCEEEEEEEEEEC
T ss_pred             eCCC---CCeEEEEEEEeCCCCccccceEeecCCCceEEEEeCC----CCCCcEEEEEEEEEeCCCCCccEEeEEEEEeC
Confidence            4887   44588888754333    245664 444566666553    24567899999999999888999988888873

>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}

Probab=88.76  E-value=1.6  Score=34.85  Aligned_cols=85  Identities=19%  Similarity=0.213  Sum_probs=52.9

Q ss_pred             CCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCcceEE
Q psy8639         161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETLTSFI  240 (570)
Q Consensus       161 Nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~  240 (570)
                      .|.+|+|.... ...|..+...... ..+.|.|...|+   |                   +..|......|......|.
T Consensus         7 ~~~~P~It~~~-d~tI~~Gd~fd~~-~gvtA~D~~DGD---l-------------------T~~I~V~g~Vdt~k~G~Y~   62 (103)
T 2kpn_A            7 SDLEPKLTVPV-GATIHVGDSFVPM-AEVLAIDKEDGD---L-------------------TSKIKVDGEVDTTKAGTYV   62 (103)
T ss_dssp             CCCCCEEECCS-EEEEETTCCCCHH-HHCEEECSSSCB---C-------------------GGGCEEESCCCSSSCEEEE
T ss_pred             CCCCCEEEeCC-CEEEECCCCcccc-cCcEEEcCCCCC---c-------------------ceeEEEeCcccCCCceEEE
Confidence            45678876542 3455544322211 125777765332   1                   1223333456777788999


Q ss_pred             EEEEEEECCCCCCCCceeEEEEEEEEeeCCCCCC
Q psy8639         241 LVVKVTDQAANISERLSTSLTARVVVKDLNDNAP  274 (570)
Q Consensus       241 l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd~~P  274 (570)
                      ++..++|..|     ...+.+.+|+|.+..+..|
T Consensus        63 VtY~VtDs~G-----n~~t~trtVtV~~~~e~~~   91 (103)
T 2kpn_A           63 LTYTVTDSKG-----HEVTAKQTVTVKVREEVKN   91 (103)
T ss_dssp             EEEEEECTTS-----CEEEEEEEEEEECSSCCCC
T ss_pred             EEEEEEcCCC-----CEEEEEEEEEEeCCCcccC
Confidence            9999999988     6778888899888665443

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=88.08  E-value=4.1  Score=35.14  Aligned_cols=80  Identities=21%  Similarity=0.308  Sum_probs=61.4

Q ss_pred             CCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCCC
Q psy8639         381 TSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSG  460 (570)
Q Consensus       381 d~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (570)
                      .+.|-|....|...++-....|..+++|.-.|...                                            +
T Consensus        31 ~C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g--------------------------------------------~   66 (159)
T 1op4_A           31 LCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--------------------------------------------K   66 (159)
T ss_dssp             CCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--------------------------------------------C
T ss_pred             cccCCcCcceeEEeccccccCCceeceeecccCCC--------------------------------------------C
Confidence            36789998889777778888899999998888865                                            4


Q ss_pred             ceEEEEecCCCCCC-cEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCC
Q psy8639         461 YNLTYMIPAGVADD-MFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKS  510 (570)
Q Consensus       461 ~~~~y~i~~~~~~~-~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~  510 (570)
                      ..+.|..    .+. .|+|++ .|.|++.+.+-- ......|.|.|.|...
T Consensus        67 ~~~~~~s----sDp~dFkV~~-DGtVya~r~v~L-~~~~~~F~V~a~D~~t  111 (159)
T 1op4_A           67 RKVQYES----SEPADFKVDE-DGTVYAVRSFPL-TAEQAKFLIYAQDKET  111 (159)
T ss_dssp             CCEEEEC----CCSSEEEEET-TTEEEEESCCSC-SSSCEEEEEEEEETTT
T ss_pred             CceeEEc----CCCCCeEEeC-CCcEEEecceee-cCCCcEEEEEEEcCCC
Confidence            4566764    344 899988 699999888643 3344589999999664

>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.83  E-value=7.4  Score=30.77  Aligned_cols=32  Identities=19%  Similarity=0.449  Sum_probs=27.6

Q ss_pred             CcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeCCC
Q psy8639         235 TLTSFILVVKVTDQAANISERLSTSLTARVVVKDLND  271 (570)
Q Consensus       235 ~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dvNd  271 (570)
                      ....|.|++.|+|..+     .+++.++.|+|.+.+.
T Consensus        67 ~~G~y~f~LTVtD~~G-----~s~s~~v~VtV~~~~~   98 (102)
T 2yrl_A           67 QVGTYVFTLTVKDERN-----LQSQSSVNVIVKEESG   98 (102)
T ss_dssp             CSSEEEEEEEEEBTTC-----CEEEEEEEEEEECCSS
T ss_pred             CCeEEEEEEEEEeCCC-----CEEEeEEEEEEcCCCC
Confidence            4569999999999987     7888999999988765

>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.15  E-value=2.7  Score=33.44  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             ccceEEEEEEEEeCCCCCeeEEEEEEEEEecCC
Q psy8639         495 TVDQYNLVVHVTDSKSGDYDTTNVFITILDVND  527 (570)
Q Consensus       495 ~~~~~~l~V~atD~~~~~~~~~~v~I~V~dvNd  527 (570)
                      ..+.|.|+++++|.. +.+.+.+++|+|...+.
T Consensus        67 ~~G~y~f~LTVtD~~-G~s~s~~v~VtV~~~~~   98 (102)
T 2yrl_A           67 QVGTYVFTLTVKDER-NLQSQSSVNVIVKEESG   98 (102)
T ss_dssp             CSSEEEEEEEEEBTT-CCEEEEEEEEEEECCSS
T ss_pred             CCeEEEEEEEEEeCC-CCEEEeEEEEEEcCCCC
Confidence            578999999999998 58899999999998765

>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}

Probab=80.75  E-value=3.8  Score=32.57  Aligned_cols=47  Identities=23%  Similarity=0.278  Sum_probs=37.1

Q ss_pred             EEEEcccCCccccceEEEEEEEEeCCCCCeeEEEEEEEEEecCCCCcc
Q psy8639         484 VVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPE  531 (570)
Q Consensus       484 ~i~~~~~lD~E~~~~~~l~V~atD~~~~~~~~~~v~I~V~dvNd~~P~  531 (570)
                      .|.+....|....+.|.++..++|+. |...+++.+|+|.+..+..|.
T Consensus        46 ~I~V~g~Vdt~k~G~Y~VtY~VtDs~-Gn~~t~trtVtV~~~~e~~~~   92 (103)
T 2kpn_A           46 KIKVDGEVDTTKAGTYVLTYTVTDSK-GHEVTAKQTVTVKVREEVKND   92 (103)
T ss_dssp             GCEEESCCCSSSCEEEEEEEEEECTT-SCEEEEEEEEEEECSSCCCCC
T ss_pred             eEEEeCcccCCCceEEEEEEEEEcCC-CCEEEEEEEEEEeCCCcccCC
Confidence            34445567877899999999999998 578889999999986665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	570
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	1e-10
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	6e-05
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	2e-04
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	2e-04
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	1e-10
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	1e-09
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	5e-05
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	5e-04
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	2e-10
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	3e-08
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	9e-05
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	2e-10
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	1e-09
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	1e-05
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	0.001
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	3e-10
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	4e-10
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	1e-06
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	5e-06
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	5e-10
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	2e-07
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	2e-05
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	0.001
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	1e-08
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	3e-08
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	3e-06
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	0.003
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	2e-08
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	4e-08
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	4e-05
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	0.003
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	5e-07
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	7e-07
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	1e-06
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	3e-05

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDH 220
           NDNAP +     T  V E+  +G  +   + TD D       +     +  EG  F++  
Sbjct: 2   NDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60

Query: 221 LTGT----LTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
              +    LT  + LD+E    ++L + V +         +++ T  V V+D
Sbjct: 61  DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 42/146 (28%)

Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR 443
           P F   +Y A V E+   G  + ++        G   +                      
Sbjct: 6   PIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQA-------------------- 44

Query: 444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVV 503
                                 +   G  +     ++  G++T A+ LD E   QY L +
Sbjct: 45  -----------------VYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQI 87

Query: 504 HVTDSKSGD----YDTTNVFITILDV 525
            V +++         T  V +T+ DV
Sbjct: 88  TVENAEPFSVPLPTSTATVTVTVEDV 113

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 3/108 (2%)

Query: 55  KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDH-SGAFDIDKS 113
            F        + E+  IGF V  +  TD                ++     +   D + +
Sbjct: 7   IFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESN 65

Query: 114 SGSLVVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVA-IKIEIVDV 160
            G L  A+ LD E   +Y L++   +    S P  ++ A + + + DV
Sbjct: 66  QGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 8/110 (7%)

Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVD-QDSGDNGRVTYVISGGNEDARFHL 328
           NDNAP+F   T      V E   +G  V +++  D    G            NE   F++
Sbjct: 2   NDNAPIFDPKT--YTALVPE-NEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 58

Query: 329 DHDKGILSLARVISEYDHQSKFRA-VLNITASD---HGIPPKSSSLVINI 374
             D          ++       +  VL IT  +     +P  +S+  + +
Sbjct: 59  TTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTV 108

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 1e-10
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGN---HFSVDHLTG 223
           W   P++ P NE       +       ++    G++ Y +  Q  +      F ++  TG
Sbjct: 5   WVIPPISCPENEKGPFPKNL---VQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETG 61

Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
            L + +PLD E + ++ L              +   +   + V D
Sbjct: 62  WLKVTEPLDRERIATYTLFSHAVSSN---GNAVEDPMEILITVTD 103

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHDKGILSLARV 340
           I   E  + G     +  +  +    G+V Y I+G   D      F ++ + G L +   
Sbjct: 10  ISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEP 68

Query: 341 ISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
           +      +         A           + I I
Sbjct: 69  LDRERIATYTL---FSHAVSSNGNAVEDPMEILI 99

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPT-DHSGAFDIDKSSGSLVVARQ 122
              E+    F   N+V   S     G  V YS+T         G F I++ +G L V   
Sbjct: 11  SCPENEKGPF-PKNLVQIKSNKDKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEP 68

Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           LDRE    Y L   A+   ++ N     + I I + D
Sbjct: 69  LDRERIATYTLFSHAVS--SNGNAVEDPMEILITVTD 103

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 444 SPSTYVYHMYLISDFSGYN--LTYMIPAGVAD----DMFKIDAETGVVTLARSLDRETVD 497
               +  ++  I         + Y I    AD     +F I+ ETG + +   LDRE + 
Sbjct: 16  EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIA 75

Query: 498 QYNLVVHVTDSKSGD-YDTTNVFITILD 524
            Y L  H   S      D   + IT+ D
Sbjct: 76  TYTLFSHAVSSNGNAVEDPMEILITVTD 103

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 2e-10
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGD---NGRVTYVISGGNEDAR- 325
           NDN P F          V+E    G+ V K++A D D      N  + Y I   + +   
Sbjct: 1   NDNRPEFTQEV--FEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPH 58

Query: 326 ---FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
              F ++ D G++S+     + +    +   L + A+D      S++    I
Sbjct: 59  KNMFTVNRDTGVISVLTSGLDRESYPTYT--LVVQAADLQGEGLSTTAKAVI 108

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 10/115 (8%)

Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGS---NGELRYGLVRQYPEGNH-- 215
           NDN P + +      V E  + G+++   +ATDADD     N  + Y +V Q PE  H  
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60

Query: 216 -FSVDHLTGTLTLLQPL-DYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
            F+V+  TG +++L    D E+  ++ LVV+  D      E LST+  A + VKD
Sbjct: 61  MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQ---GEGLSTTAKAVITVKD 112

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 37/143 (25%)

Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR 443
           P F    +  +V+E A+PGT ++KV A       N     +                   
Sbjct: 5   PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA------------------ 46

Query: 444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSL-DRETVDQYNLV 502
                            Y +    P     +MF ++ +TGV+++  S  DRE+   Y LV
Sbjct: 47  -----------------YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLV 89

Query: 503 VHVTDSKS-GDYDTTNVFITILD 524
           V   D +  G   T    IT+ D
Sbjct: 90  VQAADLQGEGLSTTAKAVITVKD 112

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 276 FVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHD 331
           +V P     I VSE  R G    ++  +  +     +V Y I+G   D      F ++ +
Sbjct: 2   WVIPP----IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWE 56

Query: 332 KGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
            G      V    D +   + VL+  A      P    + I I
Sbjct: 57  TGW---MLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITI 96

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 167 WGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEG---NHFSVDHLTG 223
           W   P+ +  NE    G          ++     ++ Y +  Q  +      F ++  TG
Sbjct: 2   WVIPPIKVSENER---GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETG 58

Query: 224 TLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
            + + +PLD E    ++L      +       +   +   + V D
Sbjct: 59  WMLVTRPLDREEYDKYVLSSHAVSEN---GSPVEEPMEITINVID 100

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDH-SGAFDIDKSSGSLVVARQ 122
           ++ E+    F    +V   S  +     V YS+T     +   G F I+  +G ++V R 
Sbjct: 8   KVSENERGPF-PKRLVQIKSN-KDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 65

Query: 123 LDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           LDRE   +Y L   A+    + +P    + I I ++D
Sbjct: 66  LDREEYDKYVLSSHAVS--ENGSPVEEPMEITINVID 100

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 427 VSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDM----FKIDAET 482
           VSE+   G +  ++V    +                + Y I    AD+     F+I+ ET
Sbjct: 9   VSENE-RGPFPKRLVQIKSN----------KDRFNKVYYSITGQGADNPPQGVFRIEWET 57

Query: 483 GVVTLARSLDRETVDQYNLVVHVTDSKSGD-YDTTNVFITILD 524
           G + + R LDRE  D+Y L  H          +   + I ++D
Sbjct: 58  GWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 55.4 bits (132), Expect = 3e-10
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 162 DNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHL 221
           + AP +      + V+ED   G  I +  A D D     +L Y            +V+  
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY--FIGNDPARWLTVNKD 58

Query: 222 TGTLTLLQPLDYETLT----SFILVVKVTDQAANISERLSTSLTARVVVKD 268
            G +T    LD E+      ++ +++ VTD         + + T  + V D
Sbjct: 59  NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDG---VSVGTGTGTLILHVLD 106

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 271 DNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLDH 330
           + AP FV     S + VSE    G  +  + A D D     +++Y I             
Sbjct: 1   NEAPFFVPAV--SRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKD 58

Query: 331 DKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
           +  +     +  E ++       + +  +D G+   + +  + +
Sbjct: 59  NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLIL 102

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 48/147 (32%)

Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR 443
           P F+      +VSED   G  II +VA+ P                              
Sbjct: 4   PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKL---------------------- 41

Query: 444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETV----DQY 499
                                             ++ + G+VT   +LDRE+     + Y
Sbjct: 42  ---------------------SYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTY 80

Query: 500 NLVVHVTDS-KSGDYDTTNVFITILDV 525
            +++ VTD   S    T  + + +LDV
Sbjct: 81  TVIMLVTDDGVSVGTGTGTLILHVLDV 107

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 43.4 bits (101), Expect = 5e-06
 Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 11/110 (10%)

Query: 55  KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSS 114
            F   +S  ++ ED+  G  + ++V+ D   +       +        D +    ++K +
Sbjct: 5   FFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN-----DPARWLTVNKDN 59

Query: 115 GSLVVARQLDRET----CPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDV 160
           G +     LDRE+       Y + +   D   S    +    + + ++DV
Sbjct: 60  GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVS--VGTGTGTLILHVLDV 107

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 5e-10
 Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG--SNGELRYGLVRQYPEGNH--- 215
           NDN P +        V E +  G+ +   TA DADD    NG LRY +V Q P       
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60

Query: 216 FSVDHLTGTL-TLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
           F++++ TG + T+   LD E +  + L+++ TD   N +  LS + TA + V D
Sbjct: 61  FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGD--NGRVTYVISGGN----ED 323
           NDN P F+         V E ++ G++V  +TA+D D  +  NG + Y I          
Sbjct: 1   NDNRPEFLHQVW--NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSP 58

Query: 324 ARFHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPK---SSSLVINI 374
             F ++++ G +       + +   ++   L I A+D    P    S++    I
Sbjct: 59  NMFTINNETGDIITVAAGLDREKVQQYT--LIIQATDMEGNPTYGLSNTATAVI 110

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 41/146 (28%)

Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR 443
           P FL   ++ +V E + PGTY++ V A                                 
Sbjct: 5   PEFLHQVWNGSVPEGSKPGTYVMTVTA--------------------------------- 31

Query: 444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETG-VVTLARSLDRETVDQYNLV 502
                      ++    Y +    P+  + +MF I+ ETG ++T+A  LDRE V QY L+
Sbjct: 32  ---IDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLI 88

Query: 503 VHVTDS----KSGDYDTTNVFITILD 524
           +  TD       G  +T    IT+ D
Sbjct: 89  IQATDMEGNPTYGLSNTATAVITVTD 114

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 55  KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTG--RAGGGHVMYSLTSLSPTDHSGAFDIDK 112
           +F   + N  + E    G  V  V + D+       G      ++    T     F I+ 
Sbjct: 6   EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINN 65

Query: 113 SSGSLVVARQLD-RETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDVND 162
            +G ++       RE   +Y L ++A D   +     S  A    ++ V D
Sbjct: 66  ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTA--TAVITVTD 114

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSG---DNGRVTYVISGGNEDAR- 325
           NDN P F          V E  + G+ V  ++A D+D      NG ++Y I   + +   
Sbjct: 2   NDNRPKFTQDV--FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPI 59

Query: 326 ---FHLDHDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
              F ++ + G++SL     + +   ++   L + A+D      S      I
Sbjct: 60  PNLFTINRETGVISLIGTGLDREKFPEYT--LTVQATDLEGAGLSVEGKAII 109

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDAD---DGSNGELRYGLVRQYPEG---N 214
           NDN P++ ++     V E    G+ +   +ATD D   D  NG L Y +++Q PE    N
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61

Query: 215 HFSVDHLTGTLTLLQP-LDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
            F+++  TG ++L+   LD E    + L V+ TD        LS    A + + D
Sbjct: 62  LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLE---GAGLSVEGKAIIQITD 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 29/143 (20%), Positives = 46/143 (32%), Gaps = 37/143 (25%)

Query: 384 PTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVAR 443
           P F    +  +V E   PGT ++ V A       + +   +                   
Sbjct: 6   PKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLS------------------ 47

Query: 444 SPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGVVT-LARSLDRETVDQYNLV 502
                            Y++    P     ++F I+ ETGV++ +   LDRE   +Y L 
Sbjct: 48  -----------------YSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLT 90

Query: 503 VHVTDSKSGD-YDTTNVFITILD 524
           V  TD +           I I D
Sbjct: 91  VQATDLEGAGLSVEGKAIIQITD 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 55  KFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLS---PTDHSGAFDID 111
           KF + +    ++E V  G  V  V +TD        + + S + L           F I+
Sbjct: 7   KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 66

Query: 112 KSSGSL-VVARQLDRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           + +G + ++   LDRE  PEY L V+A D        S      I+I D
Sbjct: 67  RETGVISLIGTGLDREKFPEYTLTVQATD--LEGAGLSVEGKAIIQITD 113

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 285 IYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDAR----FHLDHDKGILSLARV 340
           I + E +R G    ++  +      N  + Y ++G   D      F ++   G      V
Sbjct: 9   INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQ---LSV 64

Query: 341 ISEYDHQSKFRAVLNITASDHGIPPKSSSLVINI 374
               D +   R  L   A D       + + I I
Sbjct: 65  TKPLDRELIARFHLRAHAVDINGNQVENPIDIVI 98

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (117), Expect = 4e-08
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 164 APRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGN---HFSVDH 220
              W   P+ +P N     G          +    N  LRY +     +      F ++ 
Sbjct: 1   GSDWVIPPINLPENSR---GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINP 57

Query: 221 LTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKD 268
           ++G L++ +PLD E +  F L     D       ++   +   + V D
Sbjct: 58  ISGQLSVTKPLDRELIARFHLRAHAVDIN---GNQVENPIDIVINVID 102

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 64  EIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQL 123
            + E+    F    +V   S                +    +G F I+  SG L V + L
Sbjct: 10  NLPENSRGPF-PQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68

Query: 124 DRETCPEYKLEVRALDTSTSSNPQSSAVAIKIEIVD 159
           DRE    + L   A+D   + N   + + I I ++D
Sbjct: 69  DRELIARFHLRAHAVD--INGNQVENPIDIVINVID 102

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 444 SPSTYVYHMYLISDFSGYN--LTYMIPAGVAD----DMFKIDAETGVVTLARSLDRETVD 497
           S   +   +  I      N  L Y +    AD     +F I+  +G +++ + LDRE + 
Sbjct: 15  SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 74

Query: 498 QYNLVVHVTDSKSGD-YDTTNVFITILD 524
           +++L  H  D       +  ++ I ++D
Sbjct: 75  RFHLRAHAVDINGNQVENPIDIVINVID 102

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 5e-07
 Identities = 14/122 (11%), Positives = 35/122 (28%), Gaps = 17/122 (13%)

Query: 425 FLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFSGYNLTYMIPAGVADDMFKIDAETGV 484
            ++ +D   G  ++ V   + +      Y  S+ + + +                     
Sbjct: 20  AVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDG----------------T 63

Query: 485 VTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSCYPITIPE 544
           V   RS      +Q   +++  D ++ +     V ++        P  +      I  P 
Sbjct: 64  VYAVRSFPLTA-EQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPR 122

Query: 545 NS 546
             
Sbjct: 123 QL 124

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 7e-07
 Identities = 11/134 (8%), Positives = 39/134 (29%), Gaps = 12/134 (8%)

Query: 159 DVNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSV 218
           ++      + E+  +  + +D   G  + N   ++ +       R   V+          
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN-------RKRKVQYESSEPADFK 57

Query: 219 DHLTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPVFVS 278
               GT+  ++        +  L+      A +   +    +   +  +      P+   
Sbjct: 58  VDEDGTVYAVRSFPLTAEQAKFLIY-----AQDKETQEKWQVAVNLSREPTLTEEPMKEP 112

Query: 279 PTRGSLIYVSEQTR 292
                +++  +  +
Sbjct: 113 HEIEEIVFPRQLAK 126

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 10/115 (8%)

Query: 161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDH 220
           NDN P       T+               T +DAD   N       +    +    +   
Sbjct: 1   NDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55

Query: 221 LTGTLTLLQPLDYETLTSFILVVKVTDQAANISERLSTSLTARVVVKDLNDNAPV 275
             GT  LL P        + + V ++D     ++           V      A  
Sbjct: 56  SKGTSMLLSPTQQLKKGDYSIYVLLSD-----AQNNPQLTVVNATVCSCEGKAIK 105

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 9/106 (8%)

Query: 270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNGRVTYVISGGNEDARFHLD 329
           NDN PV           + +Q         +T  D D   N     V      D  +  +
Sbjct: 1   NDNGPVPSPRV----FTMCDQN---PEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAE 53

Query: 330 HDKGILSLARVISEYDHQSKFRAVLNITASDHGIPPKSSSLVINIL 375
            D    S+    ++   +  +     +  SD    P+ + +   + 
Sbjct: 54  LDSKGTSMLLSPTQQLKKGDYSIY--VLLSDAQNNPQLTVVNATVC 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	570
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.73
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.72
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.72
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.71
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.7
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.7
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.69
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.69
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.65
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.65
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.61
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.55
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.5
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.41
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.39
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.39
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.38
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.37
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.36
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.36
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	94.49
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	92.59

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.73  E-value=6.1e-18  Score=140.99  Aligned_cols=106  Identities=33%  Similarity=0.517  Sum_probs=94.6

Q ss_pred             CCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCC---CCceEEEEEEecCCC---CCcEEEeCCCcEEEEc-ccCC
Q psy8639         160 VNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG---SNGELRYGLVRQYPE---GNHFSVDHLTGTLTLL-QPLD  232 (570)
Q Consensus       160 vNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g---~~~~~~y~l~~~~~~---~~~F~Id~~~G~i~~~-~~lD  232 (570)
                      .|||+|+|....|.+.|+|+++.|+.++++.|+|+|.+   .|+.+.|+|..+.+.   .++|.|++.+|.|++. +.||
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD   80 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLD   80 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCC
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccccC
Confidence            49999999999999999999999999999999999965   467899999887543   3689999999999885 5799


Q ss_pred             ccCcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         233 YETLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       233 ~e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      ||....|.|.|.|+|.++++   ++++++|.|+|.|
T Consensus        81 ~E~~~~y~l~V~a~D~~~~~---~~~~~~v~I~V~D  113 (113)
T d1l3wa2          81 REKFPEYTLTVQATDLEGAG---LSVEGKAIIQITD  113 (113)
T ss_dssp             TTTCCEEEEEEEEEHHHHTS---CEEECCEEEEEEC
T ss_pred             cccCCEEEEEEEEEECCCCC---cEEEEEEEEEEEC
Confidence            99999999999999987664   7888999999986

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2e-17  Score=137.69  Aligned_cols=105  Identities=36%  Similarity=0.545  Sum_probs=93.6

Q ss_pred             CCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCC---CCceEEEEEEecCCC---CCcEEEeCCCcEEEE-cccCCc
Q psy8639         161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDG---SNGELRYGLVRQYPE---GNHFSVDHLTGTLTL-LQPLDY  233 (570)
Q Consensus       161 Nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g---~~~~~~y~l~~~~~~---~~~F~Id~~~G~i~~-~~~lD~  233 (570)
                      |||+|.|....|.+.|+|+.+.|+.++++.|+|+|.|   .++.++|+|..+.+.   ..+|.|++.+|.|++ .+.|||
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~   80 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR   80 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCT
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEeccccc
Confidence            8999999999999999999999999999999999965   467899999886432   468999999999986 567999


Q ss_pred             cCcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         234 ETLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       234 e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      |....|.|+|.|+|.++++   ++++++|.|.|.|
T Consensus        81 E~~~~y~l~V~a~D~g~~~---~~~~~~v~I~V~D  112 (112)
T d1edha2          81 ESYPTYTLVVQAADLQGEG---LSTTAKAVITVKD  112 (112)
T ss_dssp             TTCCEEEEEEEEETGGGTS---CEEEEEEEEEEEC
T ss_pred             ccCcEEEEEEEEEECCCCc---cEEEEEEEEEEEC
Confidence            9999999999999988764   7889999999986

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.6e-17  Score=138.80  Aligned_cols=108  Identities=35%  Similarity=0.506  Sum_probs=92.3

Q ss_pred             CCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCC--CCCCceEEEEEEecCC---CCCcEEEeCCCcEE-EEcccCCcc
Q psy8639         161 NDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDAD--DGSNGELRYGLVRQYP---EGNHFSVDHLTGTL-TLLQPLDYE  234 (570)
Q Consensus       161 Nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D--~g~~~~~~y~l~~~~~---~~~~F~Id~~~G~i-~~~~~lD~e  234 (570)
                      |||+|+|....|.+.|.|++++|+.++++.|+|+|  .+.|+.++|+|..+.+   ..++|.|++.+|.+ ++.++||||
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E   80 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDRE   80 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCTT
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccccccc
Confidence            89999999999999999999999999999999999  4668899999987643   24689999999975 577889999


Q ss_pred             CcceEEEEEEEEECCCCCCCCceeEEEEEEEEee
Q psy8639         235 TLTSFILVVKVTDQAANISERLSTSLTARVVVKD  268 (570)
Q Consensus       235 ~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~d  268 (570)
                      ....|.|.|+|+|.++++...+++.++|.|.|.|
T Consensus        81 ~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          81 KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             TCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             cCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            9999999999999776554446788889888876

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.71  E-value=1.2e-17  Score=139.13  Aligned_cols=107  Identities=31%  Similarity=0.437  Sum_probs=92.9

Q ss_pred             CCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecC
Q psy8639         379 VSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDF  458 (570)
Q Consensus       379 vNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (570)
                      .|||+|.|.+..|.+.|.|++++|+.|+++.|+|+|..                            .           .+
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~----------------------------~-----------~~   41 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDN----------------------------I-----------DS   41 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCC----------------------------S-----------SS
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeeccccc----------------------------c-----------cc
Confidence            38999999999999999999999999999999999970                            0           03


Q ss_pred             CCceEEEEecCCCC----CCcEEEeCCCcEEEEc-ccCCccccceEEEEEEEEeCCC-CCeeEEEEEEEEEe
Q psy8639         459 SGYNLTYMIPAGVA----DDMFKIDAETGVVTLA-RSLDRETVDQYNLVVHVTDSKS-GDYDTTNVFITILD  524 (570)
Q Consensus       459 ~~~~~~y~i~~~~~----~~~F~Id~~tG~i~~~-~~lD~E~~~~~~l~V~atD~~~-~~~~~~~v~I~V~d  524 (570)
                      .++.+.|+|..+..    .+.|.|++.+|.|++. +.||||....|.|.|+|+|.++ +++++++|+|+|+|
T Consensus        42 ~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          42 LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             STTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             cceEEEEEEecCCCCccccceeeeeecceeEEEeccccCcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            56789999966542    3689999999999885 6799999999999999999776 67899999999987

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=5.3e-17  Score=135.04  Aligned_cols=106  Identities=30%  Similarity=0.512  Sum_probs=91.8

Q ss_pred             CCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCC
Q psy8639         380 STSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFS  459 (570)
Q Consensus       380 Nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (570)
                      |||+|.|.+..|.+.|.|+.++|+.|++|.|+|+|..                            .           .+.
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g----------------------------~-----------~~~   41 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD----------------------------V-----------NTY   41 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCT----------------------------T-----------TCS
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccC----------------------------C-----------ccc
Confidence            8999999999999999999999999999999999970                            0           024


Q ss_pred             CceEEEEecCCC----CCCcEEEeCCCcEEEE-cccCCccccceEEEEEEEEeCCC-CCeeEEEEEEEEEe
Q psy8639         460 GYNLTYMIPAGV----ADDMFKIDAETGVVTL-ARSLDRETVDQYNLVVHVTDSKS-GDYDTTNVFITILD  524 (570)
Q Consensus       460 ~~~~~y~i~~~~----~~~~F~Id~~tG~i~~-~~~lD~E~~~~~~l~V~atD~~~-~~~~~~~v~I~V~d  524 (570)
                      ++.+.|+|..+.    ....|.|++.+|.|++ .+.||||....|.|+|+|+|++. +++++++|.|.|+|
T Consensus        42 n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          42 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             TTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             cceEEEEEecCCccccceeEEEEecccceEEEEecccccccCcEEEEEEEEEECCCCccEEEEEEEEEEEC
Confidence            568999996543    3468999999999986 56799999999999999999887 57899999999987

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.70  E-value=1.5e-17  Score=136.97  Aligned_cols=103  Identities=23%  Similarity=0.279  Sum_probs=93.7

Q ss_pred             CCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCCCCCcEEEeCCCcEEEEcccCCccCc----c
Q psy8639         162 DNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYPEGNHFSVDHLTGTLTLLQPLDYETL----T  237 (570)
Q Consensus       162 d~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~~~~~F~Id~~~G~i~~~~~lD~e~~----~  237 (570)
                      ||+|.|....|.+.|.|+.++|+.++++.|+|+|.+.++.++|+|..+  ..++|.|++.+|.|++.+.||||..    .
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~--~~~~F~id~~tG~i~~~~~lD~E~~~~~~~   78 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND--PARWLTVNKDNGIVTGNGNLDRESEYVKNN   78 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCC--SSCCCEEETTTTEEEECSCCCTTSSSCCSS
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecCC--CcccceeccccceEEEccccChhhccccCC
Confidence            679999999999999999999999999999999999999999999764  3579999999999999999999963    5


Q ss_pred             eEEEEEEEEECCCCCCCCceeEEEEEEEEeeC
Q psy8639         238 SFILVVKVTDQAANISERLSTSLTARVVVKDL  269 (570)
Q Consensus       238 ~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dv  269 (570)
                      .|.|.|.|+|.+.+.   +++++++.|+|.||
T Consensus        79 ~y~l~v~a~D~g~p~---~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          79 TYTVIMLVTDDGVSV---GTGTGTLILHVLDV  107 (107)
T ss_dssp             CCEEEEEEEECSSSC---CCCCEEEECCBCCC
T ss_pred             eEEEEEEEEECCcCC---cEEEEEEEEEEEeC
Confidence            799999999998875   78889999999886

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4e-17  Score=140.22  Aligned_cols=123  Identities=16%  Similarity=0.183  Sum_probs=109.0

Q ss_pred             eCCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeec
Q psy8639         378 TVSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISD  457 (570)
Q Consensus       378 dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (570)
                      ++|++.|.|.+..|.+.|.|+.+.|+.|++|.|+|.|.                                          
T Consensus         5 ~~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d~------------------------------------------   42 (136)
T d1op4a_           5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR------------------------------------------   42 (136)
T ss_dssp             CCCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS------------------------------------------
T ss_pred             CCCCccceecCCeEEEEEECCCCCCCEEEEeEeecCCc------------------------------------------
Confidence            67899999999999999999999999999999999987                                          


Q ss_pred             CCCceEEEEecCCCCCCcEEEeCCCcEEEEcccCCccccceEEEEEEEEeCCCCCeeEEEEEEEEEecCCCCcccccCCe
Q psy8639         458 FSGYNLTYMIPAGVADDMFKIDAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEFKSGSC  537 (570)
Q Consensus       458 ~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~  537 (570)
                        ++.+.|++..   ...|.|++ +|.|++.+.||||.. .|.|.|.|+|++.+..+.+.|.|.|.|.||+.|.|..+..
T Consensus        43 --~~~~~y~~~~---~~~F~i~~-~G~I~~~~~ld~e~~-~y~l~V~A~D~g~~~~~~t~V~i~v~d~nd~~p~~~~~~~  115 (136)
T d1op4a_          43 --KRKVQYESSE---PADFKVDE-DGTVYAVRSFPLTAE-QAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEI  115 (136)
T ss_dssp             --CCCEEEECCC---SSEEEEET-TTEEEEESCCSCSSS-CEEEEEEEEETTTTEEEEEEEEECCCCCCCCCCSSCCCCS
T ss_pred             --cccceecccc---ceeeeccc-cEEEEEecccCcccc-eEEEEEEEEecCCcceeeeEEEEEEcccCCCCCcccCCCC
Confidence              4678898843   35799998 699999999999975 6999999999987666778899999999999999986777


Q ss_pred             eeEEecCCCCCC
Q psy8639         538 YPITIPENSEAA  549 (570)
Q Consensus       538 ~~~~v~E~~~~~  549 (570)
                      +.+.++|+...|
T Consensus       116 ~~i~~P~~~~~~  127 (136)
T d1op4a_         116 EEIVFPRQLAKH  127 (136)
T ss_dssp             CCCSSCCCCCCC
T ss_pred             ceEEccCcCCCC
Confidence            788899988766

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.69  E-value=2.9e-17  Score=135.27  Aligned_cols=102  Identities=19%  Similarity=0.264  Sum_probs=91.2

Q ss_pred             ccccccccccceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCC----
Q psy8639          52 SRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRET----  127 (570)
Q Consensus        52 ~~p~f~~~~~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~----  127 (570)
                      ++|.|.+..|.+.|+|+.++|+.|+++.|+|+|.+ .++.++|+|  ..  +..++|.|++.+|.|++++.||||.    
T Consensus         2 n~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~-~~~~i~y~i--~~--~~~~~F~id~~tG~i~~~~~lD~E~~~~~   76 (107)
T d1l3wa4           2 EAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQ-QIQKLSYFI--GN--DPARWLTVNKDNGIVTGNGNLDRESEYVK   76 (107)
T ss_dssp             CCCEESSCEECCCBCTTCCSSEEEEECCEECCCTT-CCCCEEEEE--CC--CSSCCCEEETTTTEEEECSCCCTTSSSCC
T ss_pred             cCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcC-cCCceeEEe--cC--CCcccceeccccceEEEccccChhhcccc
Confidence            56899999999999999999999999999999988 688999999  22  3468899999999999999999995    


Q ss_pred             CCeEEEEEEEEeCCCCCCCceeEEEEEEEEeeC
Q psy8639         128 CPEYKLEVRALDTSTSSNPQSSAVAIKIEIVDV  160 (570)
Q Consensus       128 ~~~~~l~v~a~D~~g~~~~~s~~~~v~I~V~dv  160 (570)
                      ...|.|.|+|+|.+.  +.++++..|.|+|+||
T Consensus        77 ~~~y~l~v~a~D~g~--p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          77 NNTYTVIMLVTDDGV--SVGTGTGTLILHVLDV  107 (107)
T ss_dssp             SSCCEEEEEEEECSS--SCCCCCEEEECCBCCC
T ss_pred             CCeEEEEEEEEECCc--CCcEEEEEEEEEEEeC
Confidence            367999999999766  6788899999999886

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.8e-16  Score=131.01  Aligned_cols=105  Identities=35%  Similarity=0.554  Sum_probs=87.6

Q ss_pred             CCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCC
Q psy8639         380 STSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFS  459 (570)
Q Consensus       380 Nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (570)
                      |||+|.|.+..|.+.|.|+.++|+.|+++.|+|+|..                                        .+.
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~----------------------------------------~~~   40 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDP----------------------------------------NAL   40 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCT----------------------------------------TST
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCC----------------------------------------ccc
Confidence            8999999999999999999999999999999999961                                        056


Q ss_pred             CceEEEEecCC----CCCCcEEEeCCCcEE-EEcccCCccccceEEEEEEEEeCCC----CCeeEEEEEEEEEe
Q psy8639         460 GYNLTYMIPAG----VADDMFKIDAETGVV-TLARSLDRETVDQYNLVVHVTDSKS----GDYDTTNVFITILD  524 (570)
Q Consensus       460 ~~~~~y~i~~~----~~~~~F~Id~~tG~i-~~~~~lD~E~~~~~~l~V~atD~~~----~~~~~~~v~I~V~d  524 (570)
                      ++.++|+|.++    ...+.|.|++.+|.+ ++.+.||||....|.|+|+|+|.++    ++++.++|+|+|.|
T Consensus        41 n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          41 NGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             TTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCTTTCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             cceeEEEeccCCcCCCccceEEecCccceEEEeccccccccCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            78899999654    244689999999975 6778999999999999999999654    24677788888765

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=8.8e-17  Score=138.04  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=102.1

Q ss_pred             ccccccccccceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeE
Q psy8639          52 SRCKFKKYLSNNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEY  131 (570)
Q Consensus        52 ~~p~f~~~~~~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~  131 (570)
                      .+|.|.+..|.+.|+|+.++|+.|+++.|+|.|   .+..+.|++      .....|.|++ +|.|+++++||||.. .|
T Consensus         9 c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d---~~~~~~y~~------~~~~~F~i~~-~G~I~~~~~ld~e~~-~y   77 (136)
T d1op4a_           9 CKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN---RKRKVQYES------SEPADFKVDE-DGTVYAVRSFPLTAE-QA   77 (136)
T ss_dssp             CCCBCCSCEEEECCCCSSCSSCCEEECCCBCCS---SCCCEEEEC------CCSSEEEEET-TTEEEEESCCSCSSS-CE
T ss_pred             ccceecCCeEEEEEECCCCCCCEEEEeEeecCC---ccccceecc------ccceeeeccc-cEEEEEecccCcccc-eE
Confidence            578999999999999999999999999999998   457899998      3356799996 699999999999975 69


Q ss_pred             EEEEEEEeCCCCCCCceeEEEEEEEEeeCCCCCCcCCCC-ceEEEEeCCCCCCeEE
Q psy8639         132 KLEVRALDTSTSSNPQSSAVAIKIEIVDVNDNAPRWGEN-PLTIPVNEDTLVGSTI  186 (570)
Q Consensus       132 ~l~v~a~D~~g~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~~v~E~~~~gt~v  186 (570)
                      .|.|+|+|.++   +..+.+.|+|.+.|.|++.|.|... .+.+.++|+...|..+
T Consensus        78 ~l~V~A~D~g~---~~~~~t~V~i~v~d~nd~~p~~~~~~~~~i~~P~~~~~~~~~  130 (136)
T d1op4a_          78 KFLIYAQDKET---QEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGA  130 (136)
T ss_dssp             EEEEEEEETTT---TEEEEEEEEECCCCCCCCCCSSCCCCSCCCSSCCCCCCCCSC
T ss_pred             EEEEEEEecCC---cceeeeEEEEEEcccCCCCCcccCCCCceEEccCcCCCCCCc
Confidence            99999999664   3456778999999999999999754 3456778887666543

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.61  E-value=1.3e-15  Score=126.59  Aligned_cols=107  Identities=26%  Similarity=0.374  Sum_probs=87.6

Q ss_pred             CCCCCCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCc--eEEEEEEecCCCCCcEEEe----CCCcEEEEcccCCc
Q psy8639         160 VNDNAPRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNG--ELRYGLVRQYPEGNHFSVD----HLTGTLTLLQPLDY  233 (570)
Q Consensus       160 vNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~--~~~y~l~~~~~~~~~F~Id----~~~G~i~~~~~lD~  233 (570)
                      .|||+|+|....|.+.|.|+ ++|+.++++.|+|.|.+.+.  .+.|.+..  ...+.|.|.    ..+|.|.+.++|||
T Consensus         1 aNDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~~--~~~~~f~i~~~~~~~~g~i~~~~~lD~   77 (113)
T d1l3wa3           1 ANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV--NEGGFFNITTDPESNQGILTTAKGLDF   77 (113)
T ss_dssp             CCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSC--CTTSCEEEEECTTTCCEEEEESSCCCC
T ss_pred             CCCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEeecc--ccccceEEEeecCCCceEEEeeeeccc
Confidence            49999999999999999999 47999999999999976543  34333333  335789884    35689999999999


Q ss_pred             cCcceEEEEEEEEECCCCCCCCceeEEEEEEEEeeC
Q psy8639         234 ETLTSFILVVKVTDQAANISERLSTSLTARVVVKDL  269 (570)
Q Consensus       234 e~~~~~~l~v~a~D~~~~~~~~~~~~~~v~I~V~dv  269 (570)
                      |....|.|+|+|+|.+....+.++++++|.|+|.||
T Consensus        78 E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          78 ELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             SSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             ccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            999999999999998654444478899999999986

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.55  E-value=1.6e-14  Score=119.91  Aligned_cols=104  Identities=23%  Similarity=0.261  Sum_probs=86.3

Q ss_pred             CCCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecC
Q psy8639         379 VSTSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDF  458 (570)
Q Consensus       379 vNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (570)
                      .|||+|.|.+..|.+.|.|+ ++|+.|+++.|+|.|.                                          +
T Consensus         1 aNDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~------------------------------------------~   37 (113)
T d1l3wa3           1 ANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDM------------------------------------------P   37 (113)
T ss_dssp             CCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSC------------------------------------------T
T ss_pred             CCCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEcccc------------------------------------------C
Confidence            38999999999999999999 5799999999999997                                          4


Q ss_pred             CCce-EEEEecCCCCCCcEEEe----CCCcEEEEcccCCccccceEEEEEEEEeCCC----CCeeEEEEEEEEEec
Q psy8639         459 SGYN-LTYMIPAGVADDMFKID----AETGVVTLARSLDRETVDQYNLVVHVTDSKS----GDYDTTNVFITILDV  525 (570)
Q Consensus       459 ~~~~-~~y~i~~~~~~~~F~Id----~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~----~~~~~~~v~I~V~dv  525 (570)
                      .+.. ..|.+..+...+.|.|.    ..+|.|++.+.||||..+.|.|+|+|+|++.    +++++++|+|+|.||
T Consensus        38 ~~~~~~~~~~~~~~~~~~f~i~~~~~~~~g~i~~~~~lD~E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          38 GTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             TSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             CcceeEEEEeeccccccceEEEeecCCCceEEEeeeecccccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            3332 23334455567889884    4678999999999999999999999999742    478899999999996

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.50  E-value=5.6e-15  Score=121.41  Aligned_cols=104  Identities=12%  Similarity=0.086  Sum_probs=83.5

Q ss_pred             CCCCCeecCCeeEEEEeCCCCCCcEEEEEEEecCCCCCCceEEEEEEeeccCCCceEEEEEEeeCCCceeEEEEEeecCC
Q psy8639         380 STSLPTFLSPSYHANVSEDAIPGTYIIKVVARSPSTYGNYVYTEVFLVSEDAIPGTYIIKVVARSPSTYVYHMYLISDFS  459 (570)
Q Consensus       380 Nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (570)
                      |||+|.|...  ...|.|+.+.+.   .|.|+|+|.                                          +.
T Consensus         1 NDNaP~f~~~--~~~v~e~~~~~~---~v~AtD~D~------------------------------------------~~   33 (107)
T d1l3wa5           1 NDNGPVPSPR--VFTMCDQNPEPQ---VLTISDADI------------------------------------------PP   33 (107)
T ss_dssp             CCSCCCBSCC--CEEECSSSCCCE---EEEBCCSSC------------------------------------------TT
T ss_pred             CCCCCccCCC--EEEEEecCCCce---eEEEEcCcc------------------------------------------Cc
Confidence            8999999854  567999988774   578999999                                          77


Q ss_pred             Cc-eEEEEecCCCCCCcEEE-eCCCcEEEEcccCCccccceEEEEEEEEeCCCCCeeEEEEEEEEEecCCCCccc
Q psy8639         460 GY-NLTYMIPAGVADDMFKI-DAETGVVTLARSLDRETVDQYNLVVHVTDSKSGDYDTTNVFITILDVNDNAPEF  532 (570)
Q Consensus       460 ~~-~~~y~i~~~~~~~~F~I-d~~tG~i~~~~~lD~E~~~~~~l~V~atD~~~~~~~~~~v~I~V~dvNd~~P~f  532 (570)
                      ++ .++|+|..+... .|.+ ....|.+...+.||||....|.|.|+|+|+++ ...+.+++|+|+|+|||+|..
T Consensus        34 n~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ld~e~~~~y~l~V~a~D~G~-p~~~~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          34 NTYPYKVSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQN-NPQLTVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             TTCCCCCBCCSCSSS-SCBCCBCTTSSEEEEBCSSCCCSSCBCCEEECCSSSC-CCEEEECCEEECSCSSSCCCC
T ss_pred             cceeEeeeeeccccc-ccccccccceeeeeeeccccccceeEEEEEEEEeCCC-CceEEEEEEEEEEeeCCcCcc
Confidence            66 488998776543 4444 44456666678999999999999999999985 556778999999999999864

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.39  E-value=4.9e-14  Score=115.62  Aligned_cols=105  Identities=20%  Similarity=0.122  Sum_probs=83.5

Q ss_pred             CCCCCeeecCCCCeeEEEeccCCCCeEEEEEEEEeCCCCCCe-EEEEEEEeCCCCCcEEEecCCCEEEEEeecCcccccc
Q psy8639         270 NDNAPVFVSPTRGSLIYVSEQTRVGSHVTKMTAVDQDSGDNG-RVTYVISGGNEDARFHLDHDKGILSLARVISEYDHQS  348 (570)
Q Consensus       270 Nd~~P~~~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~-~i~ysi~~~~~~~~F~id~~tG~l~~~~~ld~~d~e~  348 (570)
                      |||+|+|..    +...|.|+.+.+.   .|+|+|+|.+.++ .++|+|.++....++......|.+...+.++   +|.
T Consensus         1 NDNaP~f~~----~~~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ld---~e~   70 (107)
T d1l3wa5           1 NDNGPVPSP----RVFTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQ---QLK   70 (107)
T ss_dssp             CCSCCCBSC----CCEEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCSSSSCBCCBCTTSSEEEEBCSS---CCC
T ss_pred             CCCCCccCC----CEEEEEecCCCce---eEEEEcCccCccceeEeeeeecccccccccccccceeeeeeeccc---ccc
Confidence            899999974    3578999998775   4789999998877 5889998774444433344556666677888   999


Q ss_pred             eeEEEEEEEEEECCcCCceeEEEEEEEEeeCCCCCCee
Q psy8639         349 KFRAVLNITASDHGIPPKSSSLVINILSETVSTSLPTF  386 (570)
Q Consensus       349 ~~~~~l~V~a~D~g~~~~s~~~~v~I~V~dvNd~~P~f  386 (570)
                      ...|.|.|.|+|+|.|++  .++++|+|.|+||++|.+
T Consensus        71 ~~~y~l~V~a~D~G~p~~--~~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          71 KGDYSIYVLLSDAQNNPQ--LTVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             SSCBCCEEECCSSSCCCE--EEECCEEECSCSSSCCCC
T ss_pred             ceeEEEEEEEEeCCCCce--EEEEEEEEEEeeCCcCcc
Confidence            999999999999998865  457899999999999865

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=4.6e-13  Score=108.31  Aligned_cols=94  Identities=27%  Similarity=0.364  Sum_probs=77.6

Q ss_pred             ceeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecC-CCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEeC
Q psy8639          62 NNEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLS-PTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDT  140 (570)
Q Consensus        62 ~~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~-~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D~  140 (570)
                      .++|+||.+ |..+..+.+.|.|.+ .++.++|+|.+.. ..+..++|.|++.+|.|+++++||||+...|.|.|+|+|.
T Consensus         8 ~v~V~EN~~-~~~~~~i~~~d~D~~-~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~   85 (102)
T d1ncia_           8 PINLPENSR-GPFPQELVRIRSGRD-KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDI   85 (102)
T ss_dssp             CEEEETTCC-CCSSEEEEECCBGGG-GTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECT
T ss_pred             CEEEeCCCC-CCEeEEEEEEeCCCC-CCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEEC
Confidence            357999987 444556777788877 6889999995322 1244578999999999999999999999999999999997


Q ss_pred             CCCCCCceeEEEEEEEEee
Q psy8639         141 STSSNPQSSAVAIKIEIVD  159 (570)
Q Consensus       141 ~g~~~~~s~~~~v~I~V~d  159 (570)
                      ++  +.+++++.|.|+|+|
T Consensus        86 g~--~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          86 NG--NQVENPIDIVINVID  102 (102)
T ss_dssp             TS--CBSSCCEEEEEEEEC
T ss_pred             CC--CceeeeEEEEEEEeC
Confidence            76  678889999999986

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.37  E-value=1.5e-12  Score=104.85  Aligned_cols=93  Identities=27%  Similarity=0.417  Sum_probs=77.0

Q ss_pred             eeecCCCCCCeEEEEEEEEcCCCCCCCceEEEEEEecCC-CCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEeCC
Q psy8639          63 NEIKEDVPIGFTVGNVVSTDSTGRAGGGHVMYSLTSLSP-TDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTS  141 (570)
Q Consensus        63 ~~v~E~~~~gt~v~~l~a~D~D~~~~~~~~~ysi~~~~~-~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D~~  141 (570)
                      ..|+||.+ |.....+.+.|.|.+ .++.++|+|..... ....+.|.|++.+|.|+++++||||+.+.|.|+|+|+|.+
T Consensus         7 i~v~EN~~-~~~~~~v~~~~~D~~-~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g   84 (100)
T d1l3wa1           7 IKVSENER-GPFPKRLVQIKSNKD-RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSEN   84 (100)
T ss_dssp             EEEESSCC-SSSCEEEEECCCSGG-GSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESS
T ss_pred             EEEeCCCC-CCCCEEEEEEECCCC-CCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECC
Confidence            47999975 444556777788877 68899999965332 2234689999999999999999999999999999999987


Q ss_pred             CCCCCceeEEEEEEEEee
Q psy8639         142 TSSNPQSSAVAIKIEIVD  159 (570)
Q Consensus       142 g~~~~~s~~~~v~I~V~d  159 (570)
                      +  +.++++..|+|+|+|
T Consensus        85 ~--~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          85 G--SPVEEPMEITINVID  100 (100)
T ss_dssp             S--CBCSCCEEEEEEEEC
T ss_pred             C--CcEEeEEEEEEEEeC
Confidence            6  778999999999987

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.1e-12  Score=106.04  Aligned_cols=92  Identities=23%  Similarity=0.359  Sum_probs=79.1

Q ss_pred             EEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecC---CCCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECC
Q psy8639         173 TIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQY---PEGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQA  249 (570)
Q Consensus       173 ~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~---~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~  249 (570)
                      .+.|.||.+ +..+..+.+.|.|.+.++.+.|+|....   +..++|.||+.+|.|+++++||||....|.|.|.|+|.+
T Consensus         8 ~v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g   86 (102)
T d1ncia_           8 PINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   86 (102)
T ss_dssp             CEEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTT
T ss_pred             CEEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEECC
Confidence            568999986 5566778888888888999999998632   235689999999999999999999999999999999988


Q ss_pred             CCCCCCceeEEEEEEEEee
Q psy8639         250 ANISERLSTSLTARVVVKD  268 (570)
Q Consensus       250 ~~~~~~~~~~~~v~I~V~d  268 (570)
                      ++.   +++++++.|+|.|
T Consensus        87 ~~~---~~~~~~v~I~V~D  102 (102)
T d1ncia_          87 GNQ---VENPIDIVINVID  102 (102)
T ss_dssp             SCB---SSCCEEEEEEEEC
T ss_pred             CCc---eeeeEEEEEEEeC
Confidence            764   7888999999886

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.36  E-value=2.5e-12  Score=103.53  Aligned_cols=92  Identities=17%  Similarity=0.287  Sum_probs=79.6

Q ss_pred             EEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEecCC---CCCcEEEeCCCcEEEEcccCCccCcceEEEEEEEEECC
Q psy8639         173 TIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVRQYP---EGNHFSVDHLTGTLTLLQPLDYETLTSFILVVKVTDQA  249 (570)
Q Consensus       173 ~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~~~~---~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l~v~a~D~~  249 (570)
                      .+.|+||.+ +.....+.+.|.|.+.|+.++|+|..+..   ..+.|.|++.+|.|++.++||||....|.|+|.|+|.+
T Consensus         6 ~i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g   84 (100)
T d1l3wa1           6 PIKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSEN   84 (100)
T ss_dssp             CEEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESS
T ss_pred             CEEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECC
Confidence            468999974 55667888889998889999999997543   23579999999999999999999999999999999999


Q ss_pred             CCCCCCceeEEEEEEEEee
Q psy8639         250 ANISERLSTSLTARVVVKD  268 (570)
Q Consensus       250 ~~~~~~~~~~~~v~I~V~d  268 (570)
                      ++.   +++++.++|+|.|
T Consensus        85 ~~~---~~~~~~v~I~V~D  100 (100)
T d1l3wa1          85 GSP---VEEPMEITINVID  100 (100)
T ss_dssp             SCB---CSCCEEEEEEEEC
T ss_pred             CCc---EEeEEEEEEEEeC
Confidence            775   8889999999986

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.49  E-value=0.11  Score=39.77  Aligned_cols=71  Identities=10%  Similarity=0.022  Sum_probs=49.5

Q ss_pred             ceEEEEEEecCCCCCCCceEEECcccEEEECCcCCCCCCCeEEEEEEEEeCCCCCC-CceeEEEEEEEEeeCCC
Q psy8639          90 GHVMYSLTSLSPTDHSGAFDIDKSSGSLVVARQLDRETCPEYKLEVRALDTSTSSN-PQSSAVAIKIEIVDVND  162 (570)
Q Consensus        90 ~~~~ysi~~~~~~~~~~~F~id~~~G~l~~~~~LD~E~~~~~~l~v~a~D~~g~~~-~~s~~~~v~I~V~dvNd  162 (570)
                      ..++|++....+.....+..+|+.+|.|.....  .+....|.++|+|+|.++... ...+...+.|+|.+.+.
T Consensus        31 d~~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP~--~~~~G~~~i~vtAtD~~~~~s~~~~~~dvf~i~V~P~~~  102 (103)
T d1u2ca1          31 SGEIIKVSAAGKEALPSWLHWDPHSHILEGLPL--DTDKGVHYISVSAARLGANGSHVPQTSSVFSIEVYPEDH  102 (103)
T ss_dssp             TTEEEEEEETTSSSCCTTEEEETTTTEEEECCC--GGGCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEESSCC
T ss_pred             CccEEEEEecCCCCCCccEEEeccCCEEEEccC--CCCceEEEEEEEEEeCCCCcccccEEEEEEEEEeCCCCC
Confidence            447888866556566789999999999998654  344679999999999765211 22344446666665543

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.59  E-value=0.46  Score=36.11  Aligned_cols=98  Identities=13%  Similarity=-0.097  Sum_probs=57.3

Q ss_pred             CCcCCCCceEEEEeCCCCCCeEEEEeEEecCCCCCCceEEEEEEe--cCCCCCcEEEeCCCcEEEEcccCCccCcceEEE
Q psy8639         164 APRWGENPLTIPVNEDTLVGSTIWNFTATDADDGSNGELRYGLVR--QYPEGNHFSVDHLTGTLTLLQPLDYETLTSFIL  241 (570)
Q Consensus       164 ~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~g~~~~~~y~l~~--~~~~~~~F~Id~~~G~i~~~~~lD~e~~~~~~l  241 (570)
                      .|++...+- ..+.|+..   .-.+|.+.+.+ ++  .++|++..  +.+...+..+|+.+|.|.-...  .+....|.+
T Consensus         2 ~P~i~~ipd-~~a~~G~~---f~~~ip~~~f~-~d--~~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP~--~~~~G~~~i   72 (103)
T d1u2ca1           2 VPTVVGIPD-GTAVVGRS---FRVSIPTDLIA-SS--GEIIKVSAAGKEALPSWLHWDPHSHILEGLPL--DTDKGVHYI   72 (103)
T ss_dssp             CCCCCCCCC-EEEETTSC---EEEECCHHHHC-CT--TEEEEEEETTSSSCCTTEEEETTTTEEEECCC--GGGCEEEEE
T ss_pred             CCEeccCCC-ceEeCCce---EEEeCCCCCcC-CC--ccEEEEEecCCCCCCccEEEeccCCEEEEccC--CCCceEEEE
Confidence            355543322 24555542   33444444433 22  36666654  3444689999999999886433  344678999


Q ss_pred             EEEEEECCCCCCCCceeEEEEEEEEeeCC
Q psy8639         242 VVKVTDQAANISERLSTSLTARVVVKDLN  270 (570)
Q Consensus       242 ~v~a~D~~~~~~~~~~~~~~v~I~V~dvN  270 (570)
                      +|+|+|.++...........+.|+|.+.+
T Consensus        73 ~vtAtD~~~~~s~~~~~~dvf~i~V~P~~  101 (103)
T d1u2ca1          73 SVSAARLGANGSHVPQTSSVFSIEVYPED  101 (103)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCcccccEEEEEEEEEeCCCC
Confidence            99999987643222334445566666544