Psyllid ID: psy8646

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEPAQPSNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSIKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELRENW
Secondary Structure (PSIPRED)
ccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEccccccEEEEEEEEEEEEEEEEccccccEEEEEccEEEEEEEEEEEcHHHHHHHHHHccccHHHHHHHHHHcccccccccccEEEEEEEcccccccccccEEEcHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHccccccccccccccccHHcccccccccccccccccccccccEEEEEEEEEEEEcccEEEEEEEEEEccEEEEEEccccccEEEEEEHHHEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccEEEcHHHHHHccc
Coil and Loop (DISEMBL)
MERKSSIellnsesghhcnassdslgsdskssslnsklgqepaqpsnnnepiqtsrpddlpllpgeiIQGFAREVTylcpysgpargilsvTNYKLYFRSidretpyvvEVPLGVVSIKLNTRSNDIWFWLHKLKKSLEDemlfdevqqyafpvshkLCRIVSSIIEYTDNYFRKMGWNIMNQYAELRENW
Flexible Loop (DISEMBL)
MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEPAQPSNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSiklntrsndIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELRENW
Low Complexity Region (SEG)
MERKSSIELLNSESGHHCNAssdslgsdskssslnsklgQEPAQPSNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSIKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELRENW
Disordered region (IsUnstruct)
*************************************************************LLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSIKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYA******
Disordered Region (DISOPRED)
************************************************************PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSIKLNTRSNDIWFWLHKLK***E*EMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELRE**
Disordered Region (DISEMBL)
*********LNSESG************************************IQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSIKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELRENW
Disordered Region (DISPRO)
**********************************************************DLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSIKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELRE*W
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEPAQPSNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSIKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELRENW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
A6QLT2	643	Myotubularin-related prot	yes	N/A	0.811	0.241	0.327	5e-19
A0JMK5	620	Myotubularin-related prot	yes	N/A	0.869	0.267	0.321	2e-18
Q13614	643	Myotubularin-related prot	yes	N/A	0.811	0.241	0.327	4e-18
Q5REB9	643	Myotubularin-related prot	yes	N/A	0.811	0.241	0.327	4e-18
Q5ZIV1	571	Myotubularin-related prot	yes	N/A	0.643	0.215	0.358	2e-16
Q9Z2D1	643	Myotubularin-related prot	yes	N/A	0.638	0.189	0.354	1e-15
Q13613	665	Myotubularin-related prot	no	N/A	0.586	0.168	0.336	4e-14
Q9Z2C4	669	Myotubularin-related prot	no	N/A	0.586	0.167	0.344	5e-14
Q5EB32	602	Myotubularin OS=Xenopus t	no	N/A	0.769	0.244	0.293	2e-13
A6QLT4	603	Myotubularin OS=Bos tauru	no	N/A	0.633	0.200	0.315	1e-12

>sp|A6QLT2|MTMR2_BOVIN Myotubularin-related protein 2 OS=Bos taurus GN=MTMR2 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 31/186 (16%)

Query: 20  ASSDSLGSDSKSSSLNSKLGQEPAQPSNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLC 79
            SSDS+ + +++ S + ++ +E  + +   EP         PLLPGE I+  A++VTY+C
Sbjct: 45  VSSDSISTSAENFSPDLRVLRESNKLAEMEEP---------PLLPGENIKDMAKDVTYIC 95

Query: 80  PYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVV---------------SIKLNTRS 124
           P++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+               S  L T  
Sbjct: 96  PFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVISRVEKIGGASSRGENSYGLETVC 155

Query: 125 NDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMN 182
            DI    + HK  +      +F+ + +YAFPVS+ L        EY +  F + GW + +
Sbjct: 156 KDIRNLRFAHK-PEGRTRRSIFENLMKYAFPVSNNLSLFA---FEYKE-VFPENGWKLYD 210

Query: 183 QYAELR 188
             +E R
Sbjct: 211 SLSEYR 216

Phosphatase that acts on lipids with a phosphoinositol headgroup. Has phosphatase activity towards phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: -

>sp|A0JMK5|MTMR2_DANRE Myotubularin-related protein 2 OS=Danio rerio GN=mtmr2 PE=2 SV=2

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 27/193 (13%)

Query: 19  NASSDSLGSDSKSSSLNSKLGQEP----AQPSNNNEPIQTSRPD----DLPLLPGEIIQG 70
           +AS DS+ S   S++  S     P     +  +   PI+    D    +LPLLP E++Q 
Sbjct: 4   SASVDSVESLCSSTTTRSDRSSGPKVSDTELRSKGRPIEKMYKDPSKGELPLLPVELVQE 63

Query: 71  FAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS----IKLNTRSND 126
            A++VTY+CP+ GP RG L+VTNY+L+FR  DRE  + +++PLGV+S    I   T   D
Sbjct: 64  SAKDVTYICPFIGPIRGSLTVTNYRLFFRCTDREPVFGLDLPLGVLSRVEKIGAATGRGD 123

Query: 127 IWF-----------WLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRK 175
           + +           ++HK       + +F+ + ++AFPVS+ +        EY    F +
Sbjct: 124 VSYGLACKDMRNLRFVHKEPDDSLKKSVFEVLMKFAFPVSNNMSLFA---FEY-KQVFPE 179

Query: 176 MGWNIMNQYAELR 188
            GW + +  AE +
Sbjct: 180 NGWKVYDPLAECK 192

Phosphatase that acts on lipids with a phosphoinositol headgroup. Has phosphatase activity towards phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q13614|MTMR2_HUMAN Myotubularin-related protein 2 OS=Homo sapiens GN=MTMR2 PE=1 SV=4

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)

Query: 20  ASSDSLGSDSKSSSLNSKLGQEPAQPSNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLC 79
            SSDS+ + + + S + ++ +E  + +   EP         PLLPGE I+  A++VTY+C
Sbjct: 45  VSSDSISTSADNFSPDLRVLRESNKLAEMEEP---------PLLPGENIKDMAKDVTYIC 95

Query: 80  PYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVV---------------SIKLNTRS 124
           P++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+               S  L T  
Sbjct: 96  PFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVC 155

Query: 125 NDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMN 182
            DI    + HK  +      +F+ + +YAFPVS+ L        EY +  F + GW + +
Sbjct: 156 KDIRNLRFAHK-PEGRTRRSIFENLMKYAFPVSNNLPLFA---FEYKE-VFPENGWKLYD 210

Query: 183 QYAELR 188
              E R
Sbjct: 211 PLLEYR 216

Phosphatase that acts on lipids with a phosphoinositol headgroup. Has phosphatase activity towards phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q5REB9|MTMR2_PONAB Myotubularin-related protein 2 OS=Pongo abelii GN=MTMR2 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)

Query: 20  ASSDSLGSDSKSSSLNSKLGQEPAQPSNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLC 79
            SSDS+ + + + S + ++ +E  + +   EP         PLLPGE I+  A++VTY+C
Sbjct: 45  VSSDSISTSADNFSPDLRVLRESNKLAEMEEP---------PLLPGENIKDMAKDVTYIC 95

Query: 80  PYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVV---------------SIKLNTRS 124
           P++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+               S  L T  
Sbjct: 96  PFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVC 155

Query: 125 NDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMN 182
            DI    + HK  +      +F+ + +YAFPVS+ L        EY +  F + GW + +
Sbjct: 156 KDIRNLRFAHK-PEGRTRRSIFENLMKYAFPVSNNLPLFA---FEYKE-VFPENGWKLYD 210

Query: 183 QYAELR 188
              E R
Sbjct: 211 PLLEYR 216

Phosphatase that acts on lipids with a phosphoinositol headgroup. Has phosphatase activity towards phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q5ZIV1|MTMR2_CHICK Myotubularin-related protein 2 OS=Gallus gallus GN=MTMR2 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 22/145 (15%)

Query: 61  PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVV---- 116
           PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+    
Sbjct: 5   PLLPGETIKDMAKDVTYICPFTGAIRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVE 64

Query: 117 -----------SIKLNTRSNDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVS 163
                      S  L     DI    + HK  +      +F+ + +YAFPVS+ L     
Sbjct: 65  KIGGASSRGENSYGLEIVCKDIRNLRFAHK-PEGRTRRSIFENLMKYAFPVSNNLPLFA- 122

Query: 164 SIIEYTDNYFRKMGWNIMNQYAELR 188
              EY +  F + GW + +   E R
Sbjct: 123 --FEYKE-VFPENGWKVYDPIWEYR 144

Phosphatase that acts on lipids with a phosphoinositol headgroup. Has phosphatase activity towards phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q9Z2D1|MTMR2_MOUSE Myotubularin-related protein 2 OS=Mus musculus GN=Mtmr2 PE=1 SV=3

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 22/144 (15%)

Query: 62  LLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVV----- 116
           LLPGE I+  A++VTY+CP++G  RG L+VT+Y+LYF+S++R+ P+V++  LGV+     
Sbjct: 78  LLPGENIKDMAKDVTYICPFTGAVRGTLTVTSYRLYFKSMERDPPFVLDASLGVISRVEK 137

Query: 117 ----------SIKLNTRSNDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSS 164
                     S  L T   DI    + HK  +      +F+ + +YAFPVS+ L      
Sbjct: 138 IGGASSRGENSYGLETVCKDIRNLRFAHK-PEGRTRRSIFENLMKYAFPVSNGLPLFA-- 194

Query: 165 IIEYTDNYFRKMGWNIMNQYAELR 188
             EY +  F + GW + +   E R
Sbjct: 195 -FEYKE-VFPENGWKLYDPLLEYR 216

Phosphatase that acts on lipids with a phosphoinositol headgroup. Has phosphatase activity towards phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate. Binds phosphatidylinositol 4-phosphate, hosphatidylinositol 5-phosphate, phosphatidylinositol 3,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q13613|MTMR1_HUMAN Myotubularin-related protein 1 OS=Homo sapiens GN=MTMR1 PE=1 SV=4

 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 7/119 (5%)

Query: 3   RKSSIELLNSESGHH---CNASSDSLGSDSKSSSLNSK-LGQEPAQPSNNNEPIQTSRPD 58
           R+ S+E L+S +G H   C     +  S   S S+ S+ + ++     + N+  Q    +
Sbjct: 40  RQPSVETLDSPTGSHVEWCKQLIAATISSQISGSVTSENVSRDYKALRDGNKLAQM---E 96

Query: 59  DLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
           + PL PGE I+   ++V Y+CP+ G   G L+VT++KLYF++++R+  ++++VPLGV+S
Sbjct: 97  EAPLFPGESIKAIVKDVMYICPFMGAVSGTLTVTDFKLYFKNVERDPHFILDVPLGVIS 155

Lipid phosphatase that acts on phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bisphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q9Z2C4|MTMR1_MOUSE Myotubularin-related protein 1 OS=Mus musculus GN=Mtmr1 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 7/119 (5%)

Query: 3   RKSSIELLNSESGHH---CNASSDSLGSDSKSSSLNSK-LGQEPAQPSNNNEPIQTSRPD 58
           R  SIE L+S +G H   C     +  S   S S+ S+ + ++     + N+  Q    +
Sbjct: 44  RHPSIETLDSPTGSHVEWCKQLIAATISSQISGSVTSENVSRDYKALRDGNKLAQM---E 100

Query: 59  DLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
           + PL PGE I+   ++V Y+CP+ G   G L+VT++K+YF++++R+  +V++VPLGV+S
Sbjct: 101 EAPLFPGESIKAIVKDVIYICPFMGAVSGTLTVTDFKMYFKNVERDPHFVLDVPLGVIS 159

Lipid phosphatase that acts on phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bisphosphate.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q5EB32|MTM1_XENTR Myotubularin OS=Xenopus tropicalis GN=mtm1 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 27/174 (15%)

Query: 31  SSSLNSKLGQEPAQPSNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILS 90
           S+SL + L + P    N+ +       D++P LPGE +    ++V Y+CP+ GP +G + 
Sbjct: 11  SNSLENSLRRSPGDGMNHEQN------DEIPCLPGEALIT-DKDVIYMCPFYGPVKGRIH 63

Query: 91  VTNYKLYFRSIDRETPYVVEVPLGVV---------------SIKLNTRSNDIWFWLHKLK 135
           VTNYKLYF+  + E      VPLGV+               S  L+    D+      LK
Sbjct: 64  VTNYKLYFKGEEMEPLISFSVPLGVIARIEKMGGASSRGENSYGLDITCKDMRNLRFALK 123

Query: 136 KSLED-EMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELR 188
           + +   + +F+++ +YAFP+SH L           +  F + GW + +   E R
Sbjct: 124 QEVHSRKQIFEDLTKYAFPLSHGLLLFAFQ----NEEKFPENGWAVYDAMTEFR 173

Lipid phosphatase which dephosphorylates phosphatidylinositol 3-monophosphate (PI3P) and phosphatidylinositol 3,5-bisphosphate (PI(3,5)P2).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 6

EC: 4

>sp|A6QLT4|MTM1_BOVIN Myotubularin OS=Bos taurus GN=MTM1 PE=2 SV=2

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 31/152 (20%)

Query: 58  DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVV- 116
           + LP LPGEI +   +EV Y+CP++GP +G + +TNY+LY RS++ ++  +++VPLGV+ 
Sbjct: 33  ETLPRLPGEI-RITDKEVIYICPFNGPIKGRVYITNYRLYLRSLETDSALILDVPLGVIS 91

Query: 117 --------------SIKLNTRSNDIWFWLHKLKKSLEDEM-----LFDEVQQYAFPVSHK 157
                         S  L+    D    L  L+ +L+ E      +F+ + +YAFP++H 
Sbjct: 92  RIEKMGGATSRGENSYGLDITCKD----LRNLRFALKQEGHSRRDMFEILTRYAFPLAHS 147

Query: 158 LCRIVSSIIEY-TDNYFRKMGWNIMNQYAELR 188
           L      I  +  +  F   GW + N   E R
Sbjct: 148 L-----PIFAFLNEEKFNVDGWTVYNPVEEYR 174

Lipid phosphatase which dephosphorylates phosphatidylinositol 3-monophosphate (PI3P) and phosphatidylinositol 3,5-bisphosphate (PI(3,5)P2). Has also been shown to dephosphorylate phosphotyrosine- and phosphoserine-containing peptides. Negatively regulates EGFR degradation through regulation of EGFR trafficking from the late endosome to the lysosome. Plays a role in vacuolar formation and morphology. Regulates desmin intermediate filament assembly and architecture. Plays a role in mitochondrial morphology and positioning. Required for skeletal muscle maintenance but not for myogenesis.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 6

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
345479847	617	PREDICTED: myotubularin-related protein	0.910	0.282	0.492	5e-31
307211386	617	Myotubularin-related protein 2 [Harpegna	0.910	0.282	0.497	4e-30
345479845	653	PREDICTED: myotubularin-related protein	0.958	0.280	0.448	7e-28
322785884	151	hypothetical protein SINV_12830 [Solenop	0.643	0.814	0.503	2e-27
340711503	653	PREDICTED: myotubularin-related protein	0.958	0.280	0.439	5e-27
350416308	653	PREDICTED: myotubularin-related protein	0.958	0.280	0.439	7e-27
307189985	712	Myotubularin-related protein 2 [Camponot	0.958	0.257	0.443	8e-27
66531834	652	PREDICTED: myotubularin-related protein	0.958	0.280	0.435	1e-26
380030021	653	PREDICTED: myotubularin-related protein	0.958	0.280	0.435	1e-26
193631919	633	PREDICTED: myotubularin-related protein	0.717	0.216	0.450	1e-26

>gi|345479847|ref|XP_003424041.1| PREDICTED: myotubularin-related protein 2-like isoform 2 [Nasonia vitripennis]

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 129/205 (62%), Gaps = 31/205 (15%)

Query: 1   MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEPAQPSNNNEPIQTSRPDDL 60
           ME++ S ELLN E  +  NASSDSL SDSKSSSLNSK+GQE     N   P         
Sbjct: 1   MEKRGSAELLNVEQNNSKNASSDSLNSDSKSSSLNSKMGQESNLTGNETGP--------- 51

Query: 61  PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS--- 117
           PLL GE +QG AR+VTYLCPYSGPARG+LSVTNYKL+FRSIDRETPYVVE+PLGVVS   
Sbjct: 52  PLLNGERVQGVARDVTYLCPYSGPARGVLSVTNYKLHFRSIDRETPYVVEMPLGVVSRIE 111

Query: 118 --------------IKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVS 163
                         I++  +      + HK +++     +F+++QQY+FP+SH +     
Sbjct: 112 KVGGASSRGENSYGIEIFCKDMRNLRFAHK-QENHSRRNVFEKLQQYSFPLSHNMLLFA- 169

Query: 164 SIIEYTDNYFRKMGWNIMNQYAELR 188
              EY++N F + GWN+    AEL+
Sbjct: 170 --FEYSEN-FPENGWNVYEPIAELK 191

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211386|gb|EFN87513.1| Myotubularin-related protein 2 [Harpegnathos saltator]

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/205 (49%), Positives = 127/205 (61%), Gaps = 31/205 (15%)

Query: 1   MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEPAQPSNNNEPIQTSRPDDL 60
           ME++ S ELL+ E  +  NASSDSL SDSKSSSLNSK+GQE      +  P         
Sbjct: 1   MEKRGSAELLSVEQNNSKNASSDSLNSDSKSSSLNSKMGQESNLSGGDTGP--------- 51

Query: 61  PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS--- 117
           PLL GE +QG A EVTYLCPYSGPARGILSVTNYKL+FRSIDRETPYVVEVPLGVVS   
Sbjct: 52  PLLNGERVQGIAHEVTYLCPYSGPARGILSVTNYKLHFRSIDRETPYVVEVPLGVVSRIE 111

Query: 118 --------------IKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVS 163
                         I++  +      + HK +     + +F+++QQY+FP+SHKL     
Sbjct: 112 KVGGASSRGENSYGIEVFCKDMRNLRFAHKQENHSRRD-VFEKLQQYSFPLSHKLPLFA- 169

Query: 164 SIIEYTDNYFRKMGWNIMNQYAELR 188
              EY++  F + GWN+    AEL+
Sbjct: 170 --FEYSET-FSENGWNVYEPIAELK 191

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479845|ref|XP_001605144.2| PREDICTED: myotubularin-related protein 2-like isoform 1 [Nasonia vitripennis]

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/232 (44%), Positives = 138/232 (59%), Gaps = 49/232 (21%)

Query: 1   MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEP---------------AQP 45
           ME++ S ELLN E  +  NASSDSL SDSKSSSLNSK+GQE                +  
Sbjct: 1   MEKRGSAELLNVEQNNSKNASSDSLNSDSKSSSLNSKMGQESESWEKASHSKSFSTSSTS 60

Query: 46  SNNN-----EPIQTSRPDDL-------PLLPGEIIQGFAREVTYLCPYSGPARGILSVTN 93
           ++NN     E  + S+  +L       PLL GE +QG AR+VTYLCPYSGPARG+LSVTN
Sbjct: 61  TDNNIISALETKKESQGKNLTGNETGPPLLNGERVQGVARDVTYLCPYSGPARGVLSVTN 120

Query: 94  YKLYFRSIDRETPYVVEVPLGVVS-----------------IKLNTRSNDIWFWLHKLKK 136
           YKL+FRSIDRETPYVVE+PLGVVS                 I++  +      + HK ++
Sbjct: 121 YKLHFRSIDRETPYVVEMPLGVVSRIEKVGGASSRGENSYGIEIFCKDMRNLRFAHK-QE 179

Query: 137 SLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELR 188
           +     +F+++QQY+FP+SH +        EY++N F + GWN+    AEL+
Sbjct: 180 NHSRRNVFEKLQQYSFPLSHNMLLFA---FEYSEN-FPENGWNVYEPIAELK 227

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785884|gb|EFZ12503.1| hypothetical protein SINV_12830 [Solenopsis invicta]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 93/145 (64%), Gaps = 22/145 (15%)

Query: 61  PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS--- 117
           PLL GE +QG A EVTYLCPYSGPARGILSVTNYKL+FRSIDRETPYVVEVPLGVVS   
Sbjct: 10  PLLNGERVQGIAHEVTYLCPYSGPARGILSVTNYKLHFRSIDRETPYVVEVPLGVVSRIE 69

Query: 118 --------------IKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVS 163
                         I++  +      + HK +++     +F+++QQY+FP+SHKL     
Sbjct: 70  KVGGASSRGENSYGIEVFCKDMRNLRFAHK-QENHSRRDVFEKLQQYSFPLSHKLPLFA- 127

Query: 164 SIIEYTDNYFRKMGWNIMNQYAELR 188
              EY++  F + GWN+    AEL+
Sbjct: 128 --FEYSET-FSENGWNVYEPIAELK 149

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711503|ref|XP_003394315.1| PREDICTED: myotubularin-related protein 2-like [Bombus terrestris]

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 130/232 (56%), Gaps = 49/232 (21%)

Query: 1   MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEP----------------AQ 44
           ME++ S ELLN E  +  NASSDSL SDSKSSSLNSK+GQE                   
Sbjct: 1   MEKRGSAELLNIEQNNSKNASSDSLNSDSKSSSLNSKMGQESESWDKASHSKSFSSSSTS 60

Query: 45  PSNNNEPIQTSRPDDL-----------PLLPGEIIQGFAREVTYLCPYSGPARGILSVTN 93
             NN      +R D+            PLL GE +QG A EVTY+CPYSGP RGILS+TN
Sbjct: 61  TDNNIVSALEARKDNQVKNLSGGETGPPLLNGERVQGIAHEVTYVCPYSGPVRGILSITN 120

Query: 94  YKLYFRSIDRETPYVVEVPLGVVS-----------------IKLNTRSNDIWFWLHKLKK 136
           YKL+FRS+DRETPYVVEVPLGVVS                 I++  +      + HK + 
Sbjct: 121 YKLHFRSVDRETPYVVEVPLGVVSRIEKVGGASSKGENSYGIEVFCKDMRNLRFAHKQEN 180

Query: 137 SLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELR 188
               + +F+++QQY+FP+SHKL        EY++  F + GWN+    AEL+
Sbjct: 181 HSRRD-VFEKLQQYSFPLSHKLPLFA---FEYSET-FAENGWNVYEPIAELK 227

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416308|ref|XP_003490907.1| PREDICTED: myotubularin-related protein 2-like [Bombus impatiens]

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 130/232 (56%), Gaps = 49/232 (21%)

Query: 1   MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEP----------------AQ 44
           ME++ S ELLN E  +  NASSDSL SDSKSSSLNSK+GQE                   
Sbjct: 1   MEKRGSAELLNIEQNNSKNASSDSLNSDSKSSSLNSKMGQESESWDKASHSKSFSSSSTS 60

Query: 45  PSNNNEPIQTSRPDDL-----------PLLPGEIIQGFAREVTYLCPYSGPARGILSVTN 93
             NN      +R D+            PLL GE +QG A EVTY+CPYSGP RGILS+TN
Sbjct: 61  TDNNIVSALEARKDNQVKNLSGGETGPPLLNGERVQGIAHEVTYVCPYSGPVRGILSITN 120

Query: 94  YKLYFRSIDRETPYVVEVPLGVVS-----------------IKLNTRSNDIWFWLHKLKK 136
           YKL+FRS+DRETPYVVEVPLGVVS                 I++  +      + HK + 
Sbjct: 121 YKLHFRSVDRETPYVVEVPLGVVSRIEKVGGASSKGENSYGIEVFCKDMRNLRFAHKQEN 180

Query: 137 SLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELR 188
               + +F+++QQY+FP+SHKL        EY++  F + GWN+    AEL+
Sbjct: 181 HSRRD-VFEKLQQYSFPLSHKLPLFA---FEYSET-FPENGWNVYEPIAELK 227

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189985|gb|EFN74221.1| Myotubularin-related protein 2 [Camponotus floridanus]

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 103/232 (44%), Positives = 136/232 (58%), Gaps = 49/232 (21%)

Query: 1   MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEP---------------AQP 45
           ME++ S ELL++E  +  NASSDSL SDSKSSSLNSK+GQE                +  
Sbjct: 60  MEKRGSAELLSAEQSNSKNASSDSLNSDSKSSSLNSKMGQESESWEKASHSKSFSSSSTS 119

Query: 46  SNNN-----EPIQTSRPDDL-------PLLPGEIIQGFAREVTYLCPYSGPARGILSVTN 93
           ++NN     E  + ++  +L       PLL GE +QG   EVTYLCPYSGPARGILSVTN
Sbjct: 120 TDNNIVSALEAKKDNQVKNLSGGDTGPPLLNGERMQGIPHEVTYLCPYSGPARGILSVTN 179

Query: 94  YKLYFRSIDRETPYVVEVPLGVVS-----------------IKLNTRSNDIWFWLHKLKK 136
           YKL+FRSIDRETPY+VEVPLGVVS                 I++  +      + HK + 
Sbjct: 180 YKLHFRSIDRETPYIVEVPLGVVSRIEKVGGASSRGENSYGIEVFCKDMRNLRFAHKQEN 239

Query: 137 SLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELR 188
               + +F+++QQY+FP+SHKL        EY++  F + GWN+    AEL+
Sbjct: 240 HSRRD-VFEKLQQYSFPLSHKLPLFA---FEYSET-FSENGWNVYEPIAELK 286

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66531834|ref|XP_395034.2| PREDICTED: myotubularin-related protein 2 isoform 1 [Apis mellifera]

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/232 (43%), Positives = 134/232 (57%), Gaps = 49/232 (21%)

Query: 1   MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEP---------------AQP 45
           ME++ S ELLN E  +  NASSDSL SDSKSSSLNSK+GQE                +  
Sbjct: 1   MEKRGSAELLNVEQNNSKNASSDSLNSDSKSSSLNSKMGQESESWDKASHSKSFSSSSTS 60

Query: 46  SNNN--EPIQTSRPDDL----------PLLPGEIIQGFAREVTYLCPYSGPARGILSVTN 93
           ++NN    ++T + + +          PLL GE +QG A EVTY+CPYSGP RGILS+TN
Sbjct: 61  TDNNIVSALETRKDNQVKNLSSGETGPPLLNGERVQGIAHEVTYVCPYSGPVRGILSITN 120

Query: 94  YKLYFRSIDRETPYVVEVPLGVVS-----------------IKLNTRSNDIWFWLHKLKK 136
           YKL+FRS+DRETPYVVEVPLGVVS                 I++  +      + HK + 
Sbjct: 121 YKLHFRSVDRETPYVVEVPLGVVSRIEKVGGASSKGENSYGIEVFCKDMRNLRFAHKQEN 180

Query: 137 SLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELR 188
               + +F+++QQY+FP+SHKL        EY +  F + GWN+    AEL+
Sbjct: 181 HSRRD-VFEKLQQYSFPLSHKLPLFA---FEYFET-FPENGWNVYEPIAELK 227

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030021|ref|XP_003698658.1| PREDICTED: myotubularin-related protein 2 [Apis florea]

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/232 (43%), Positives = 134/232 (57%), Gaps = 49/232 (21%)

Query: 1   MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEP---------------AQP 45
           ME++ S ELLN E  +  NASSDSL SDSKSSSLNSK+GQE                +  
Sbjct: 1   MEKRGSAELLNVEQNNSKNASSDSLNSDSKSSSLNSKMGQESESWDKASHSKSFSSSSTS 60

Query: 46  SNNN--EPIQTSRPDDL----------PLLPGEIIQGFAREVTYLCPYSGPARGILSVTN 93
           ++NN    ++T + + +          PLL GE +QG A EVTY+CPYSGP RGILS+TN
Sbjct: 61  TDNNIVSALETRKDNQVKNLSSGETGPPLLNGERVQGIAHEVTYVCPYSGPVRGILSITN 120

Query: 94  YKLYFRSIDRETPYVVEVPLGVVS-----------------IKLNTRSNDIWFWLHKLKK 136
           YKL+FRS+DRETPYVVEVPLGVVS                 I++  +      + HK + 
Sbjct: 121 YKLHFRSVDRETPYVVEVPLGVVSRIEKVGGASSKGENSYGIEVFCKDMRNLRFAHKQEN 180

Query: 137 SLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELR 188
               + +F+++QQY+FP+SHKL        EY +  F + GWN+    AEL+
Sbjct: 181 HSRRD-VFEKLQQYSFPLSHKLPLFA---FEYFET-FPENGWNVYEPIAELK 227

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193631919|ref|XP_001951188.1| PREDICTED: myotubularin-related protein 2-like [Acyrthosiphon pisum]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/162 (45%), Positives = 100/162 (61%), Gaps = 25/162 (15%)

Query: 44  QPSNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDR 103
           +PS N   + + R DD PLLPGE +QG AR+VTYLCP+SGPARG LSVTNYKLYF+S++R
Sbjct: 60  KPSEN---VASGRSDDPPLLPGEKVQGVARDVTYLCPFSGPARGWLSVTNYKLYFKSLER 116

Query: 104 ETPYVVEVPLGVVS-----------------IKLNTRSNDIWFWLHKLKKSLEDEMLFDE 146
           +T  V+EVPLGVVS                 I+L  +      + HK +++     +F++
Sbjct: 117 DTQLVIEVPLGVVSRVEKVGGQSSRGENSYGIELFCKDMRNLRFGHK-QENHSRRNVFEK 175

Query: 147 VQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELR 188
           +QQYAFP+SH +        EYT+  F + GWN+    AEL+
Sbjct: 176 LQQYAFPLSHSIPMFA---FEYTET-FPENGWNVYEPMAELK 213

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
UNIPROTKB|A6QLT2	643	MTMR2 "Myotubularin-related pr	0.947	0.281	0.294	2.3e-17
UNIPROTKB|F1MMI7	617	MTMR2 "Myotubularin-related pr	0.664	0.205	0.346	4.4e-17
ZFIN|ZDB-GENE-990715-14	620	mtmr2 "myotubularin related pr	0.659	0.203	0.365	9.3e-17
UNIPROTKB|J9P0D0	571	MTMR2 "Uncharacterized protein	0.664	0.222	0.346	1e-16
UNIPROTKB|F1STI4	617	MTMR2 "Uncharacterized protein	0.664	0.205	0.346	1.2e-16
UNIPROTKB|F6V8T7	643	MTMR2 "Uncharacterized protein	0.664	0.197	0.346	1.3e-16
UNIPROTKB|E2QTM9	645	MTMR2 "Uncharacterized protein	0.664	0.196	0.346	1.3e-16
UNIPROTKB|C9JEX3	557	MTMR2 "Myotubularin-related pr	0.664	0.228	0.340	2.6e-16
UNIPROTKB|Q13614	643	MTMR2 "Myotubularin-related pr	0.952	0.283	0.285	2.7e-16
UNIPROTKB|Q5ZIV1	571	MTMR2 "Myotubularin-related pr	0.664	0.222	0.340	4.5e-16

UNIPROTKB|A6QLT2 MTMR2 "Myotubularin-related protein 2" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 60/204 (29%), Positives = 101/204 (49%)

Query:     3 RKSSIELLNSESGHHCNAXXXXXXXXXXXXXXXXXXXQEPAQPSNN--NEPIQTSRPDDL 60
             R  S++ L+S S  H +                     E   P      E  + +  ++ 
Sbjct:    18 RPPSVDSLSSASTSH-SENSVHTKSASVVSSDSISTSAENFSPDLRVLRESNKLAEMEEP 76

Query:    61 PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI-- 118
             PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+S   
Sbjct:    77 PLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVISRVE 136

Query:   119 KLNTRSN--DIWFWLHKLKKSLED------------EMLFDEVQQYAFPVSHKLCRIVSS 164
             K+   S+  +  + L  + K + +              +F+ + +YAFPVS+ L      
Sbjct:   137 KIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLSLFA-- 194

Query:   165 IIEYTDNYFRKMGWNIMNQYAELR 188
               EY +  F + GW + +  +E R
Sbjct:   195 -FEYKE-VFPENGWKLYDSLSEYR 216

GO:0031901 "early endosome membrane" evidence=IEA

GO:0052866 "phosphatidylinositol phosphate phosphatase activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0046856 "phosphatidylinositol dephosphorylation" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032288 "myelin assembly" evidence=IEA

GO:0031642 "negative regulation of myelination" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|F1MMI7 MTMR2 "Myotubularin-related protein 2" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 51/147 (34%), Positives = 86/147 (58%)

Query:    58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
             ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+S
Sbjct:    48 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIS 107

Query:   118 I--KLNTRSN--DIWFWLHKLKKSLED------------EMLFDEVQQYAFPVSHKLCRI 161
                K+   S+  +  + L  + K + +              +F+ + +YAFPVS+ L   
Sbjct:   108 RVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLSLF 167

Query:   162 VSSIIEYTDNYFRKMGWNIMNQYAELR 188
                  EY +  F + GW + +  +E R
Sbjct:   168 A---FEYKE-VFPENGWKLYDSLSEYR 190

GO:0031642 "negative regulation of myelination" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0052866 "phosphatidylinositol phosphate phosphatase activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0046856 "phosphatidylinositol dephosphorylation" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032288 "myelin assembly" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

ZFIN|ZDB-GENE-990715-14 mtmr2 "myotubularin related protein 2" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 9.3e-17, P = 9.3e-17
 Identities = 53/145 (36%), Positives = 84/145 (57%)

Query:    59 DLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS- 117
             +LPLLP E++Q  A++VTY+CP+ GP RG L+VTNY+L+FR  DRE  + +++PLGV+S 
Sbjct:    52 ELPLLPVELVQESAKDVTYICPFIGPIRGSLTVTNYRLFFRCTDREPVFGLDLPLGVLSR 111

Query:   118 ---IKLNTRSNDIWFWL-----HKLK---KSLEDEM---LFDEVQQYAFPVSHKLCRIVS 163
                I   T   D+ + L       L+   K  +D +   +F+ + ++AFPVS+ +     
Sbjct:   112 VEKIGAATGRGDVSYGLACKDMRNLRFVHKEPDDSLKKSVFEVLMKFAFPVSNNMSLFA- 170

Query:   164 SIIEYTDNYFRKMGWNIMNQYAELR 188
                EY    F + GW + +  AE +
Sbjct:   171 --FEYKQ-VFPENGWKVYDPLAECK 192

GO:0016311 "dephosphorylation" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|J9P0D0 MTMR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 215 (80.7 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 51/147 (34%), Positives = 85/147 (57%)

Query:    58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
             ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+S
Sbjct:     2 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIS 61

Query:   118 I--KLNTRSN--DIWFWLHKLKKSLED------------EMLFDEVQQYAFPVSHKLCRI 161
                K+   S+  +  + L  + K + +              +F+ + +YAFPVS+ L   
Sbjct:    62 RVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLF 121

Query:   162 VSSIIEYTDNYFRKMGWNIMNQYAELR 188
                  EY +  F + GW + +   E R
Sbjct:   122 A---FEYKE-IFPENGWKLYDSLLEYR 144

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|F1STI4 MTMR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 215 (80.7 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 51/147 (34%), Positives = 85/147 (57%)

Query:    58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
             ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+S
Sbjct:    48 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIS 107

Query:   118 I--KLNTRSN--DIWFWLHKLKKSLED------------EMLFDEVQQYAFPVSHKLCRI 161
                K+   S+  +  + L  + K + +              +F+ + +YAFPVS+ L   
Sbjct:   108 RVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLF 167

Query:   162 VSSIIEYTDNYFRKMGWNIMNQYAELR 188
                  EY +  F + GW + +   E R
Sbjct:   168 A---FEYKE-VFPENGWKLYDSLLEYR 190

GO:0052866 "phosphatidylinositol phosphate phosphatase activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0046856 "phosphatidylinositol dephosphorylation" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032288 "myelin assembly" evidence=IEA

GO:0031642 "negative regulation of myelination" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|F6V8T7 MTMR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 215 (80.7 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 51/147 (34%), Positives = 85/147 (57%)

Query:    58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
             ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+S
Sbjct:    74 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIS 133

Query:   118 I--KLNTRSN--DIWFWLHKLKKSLED------------EMLFDEVQQYAFPVSHKLCRI 161
                K+   S+  +  + L  + K + +              +F+ + +YAFPVS+ L   
Sbjct:   134 RVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLF 193

Query:   162 VSSIIEYTDNYFRKMGWNIMNQYAELR 188
                  EY +  F + GW + +   E R
Sbjct:   194 A---FEYKE-IFPENGWKLYDSLLEYR 216

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|E2QTM9 MTMR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 215 (80.7 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 51/147 (34%), Positives = 85/147 (57%)

Query:    58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
             ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+S
Sbjct:    76 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIS 135

Query:   118 I--KLNTRSN--DIWFWLHKLKKSLED------------EMLFDEVQQYAFPVSHKLCRI 161
                K+   S+  +  + L  + K + +              +F+ + +YAFPVS+ L   
Sbjct:   136 RVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLF 195

Query:   162 VSSIIEYTDNYFRKMGWNIMNQYAELR 188
                  EY +  F + GW + +   E R
Sbjct:   196 A---FEYKE-IFPENGWKLYDSLLEYR 218

GO:0052866 "phosphatidylinositol phosphate phosphatase activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0046856 "phosphatidylinositol dephosphorylation" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032288 "myelin assembly" evidence=IEA

GO:0031642 "negative regulation of myelination" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|C9JEX3 MTMR2 "Myotubularin-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 50/147 (34%), Positives = 85/147 (57%)

Query:    58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
             ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV++
Sbjct:     2 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIN 61

Query:   118 I--KLNTRSN--DIWFWLHKLKKSLED------------EMLFDEVQQYAFPVSHKLCRI 161
                K+   S+  +  + L  + K + +              +F+ + +YAFPVS+ L   
Sbjct:    62 RVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLF 121

Query:   162 VSSIIEYTDNYFRKMGWNIMNQYAELR 188
                  EY +  F + GW + +   E R
Sbjct:   122 A---FEYKE-VFPENGWKLYDPLLEYR 144

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0002091 "negative regulation of receptor internalization" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0031642 "negative regulation of myelination" evidence=IEA

GO:0032288 "myelin assembly" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0046856 "phosphatidylinositol dephosphorylation" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0052866 "phosphatidylinositol phosphate phosphatase activity" evidence=IEA

GO:0090394 "negative regulation of excitatory postsynaptic membrane potential" evidence=IEA

GO:0097060 "synaptic membrane" evidence=IEA

GO:0097062 "dendritic spine maintenance" evidence=IEA

GO:2000643 "positive regulation of early endosome to late endosome transport" evidence=IEA

GO:2000645 "negative regulation of receptor catabolic process" evidence=IEA

UNIPROTKB|Q13614 MTMR2 "Myotubularin-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 2.7e-16, P = 2.7e-16
 Identities = 58/203 (28%), Positives = 99/203 (48%)

Query:     3 RKSSIELLNSESGHHC-NAXXXXXXXXXXXXXXXXXXXQEPAQPSNNNEPIQTSRPDDLP 61
             R  S++ L+S S  H  N+                             E  + +  ++ P
Sbjct:    18 RPPSVDSLSSASTSHSENSVHTKSASVVSSDSISTSADNFSPDLRVLRESNKLAEMEEPP 77

Query:    62 LLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI--K 119
             LLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV++   K
Sbjct:    78 LLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEK 137

Query:   120 LNTRSN--DIWFWLHKLKKSLED------------EMLFDEVQQYAFPVSHKLCRIVSSI 165
             +   S+  +  + L  + K + +              +F+ + +YAFPVS+ L       
Sbjct:   138 IGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLFA--- 194

Query:   166 IEYTDNYFRKMGWNIMNQYAELR 188
              EY +  F + GW + +   E R
Sbjct:   195 FEYKE-VFPENGWKLYDPLLEYR 216

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0031642 "negative regulation of myelination" evidence=IEA

GO:0032288 "myelin assembly" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0046856 "phosphatidylinositol dephosphorylation" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0052866 "phosphatidylinositol phosphate phosphatase activity" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=NAS

GO:0006470 "protein dephosphorylation" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0002091 "negative regulation of receptor internalization" evidence=ISS

GO:0045806 "negative regulation of endocytosis" evidence=ISS

GO:0090394 "negative regulation of excitatory postsynaptic membrane potential" evidence=ISS

GO:0097062 "dendritic spine maintenance" evidence=ISS

GO:2000643 "positive regulation of early endosome to late endosome transport" evidence=ISS

GO:2000645 "negative regulation of receptor catabolic process" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0014069 "postsynaptic density" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0043197 "dendritic spine" evidence=ISS

GO:0097060 "synaptic membrane" evidence=ISS

UNIPROTKB|Q5ZIV1 MTMR2 "Myotubularin-related protein 2" [Gallus gallus (taxid:9031)]

 Score = 209 (78.6 bits), Expect = 4.5e-16, P = 4.5e-16
 Identities = 50/147 (34%), Positives = 85/147 (57%)

Query:    58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
             ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV++
Sbjct:     2 EEPPLLPGETIKDMAKDVTYICPFTGAIRGTLTVTNYRLYFKSMERDPPFVLDASLGVIN 61

Query:   118 I--KLNTRSN--DIWFWLHKLKKSLED------------EMLFDEVQQYAFPVSHKLCRI 161
                K+   S+  +  + L  + K + +              +F+ + +YAFPVS+ L   
Sbjct:    62 RVEKIGGASSRGENSYGLEIVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLF 121

Query:   162 VSSIIEYTDNYFRKMGWNIMNQYAELR 188
                  EY +  F + GW + +   E R
Sbjct:   122 A---FEYKE-VFPENGWKVYDPIWEYR 144

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0031642 "negative regulation of myelination" evidence=IEA

GO:0032288 "myelin assembly" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0046856 "phosphatidylinositol dephosphorylation" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0052866 "phosphatidylinositol phosphate phosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
cd13357	148	cd13357, PH-GRAM_MTMR2_insect-like, Myotubularian	5e-31
cd13356	144	cd13356, PH-GRAM_MTMR2_mammal-like, Myotubularian	1e-23
cd13358	153	cd13358, PH-GRAM_MTMR1, Myotubularian related 1 pr	2e-22
cd13223	94	cd13223, PH-GRAM_MTM-like, Myotubularian 1 and rel	9e-21
cd13355	152	cd13355, PH-GRAM_MTM1, Myotubularian 1 protein (MT	2e-18
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	6e-13
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	6e-06
pfam02893	60	pfam02893, GRAM, GRAM domain	8e-04

>gnl|CDD|241511 cd13357, PH-GRAM_MTMR2_insect-like, Myotubularian related 2 protein (MTMR2) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  109 bits (275), Expect = 5e-31
 Identities = 57/152 (37%), Positives = 91/152 (59%), Gaps = 22/152 (14%)

Query: 53  QTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVP 112
             + P++  LL GE  Q  A++VTYLCP+SGP RG L++TNYKLYFRS+D+E P++V+VP
Sbjct: 2   GLANPEEFTLLEGEKPQDIAKDVTYLCPFSGPVRGTLTITNYKLYFRSLDKEPPFIVDVP 61

Query: 113 LGVV----------SIKLNTRSNDIWF-------WLHKLKKSLEDEMLFDEVQQYAFPVS 155
           LGV+          S   N+   +I+        + HK +++    ++F+++Q YAFP+S
Sbjct: 62  LGVIYRVEKVGGATSRGENSYGIEIFCKDMRNLRFAHK-QENHSRRLVFEKLQAYAFPLS 120

Query: 156 HKLCRIVSSIIEYTDNYFRKMGWNIMNQYAEL 187
           + L  + +   EY +  F + GW + +  AE 
Sbjct: 121 NSL-PLFA--FEYKE-RFSENGWAVYDPVAEY 148

MTMR2 is a member of the myotubularin protein phosphatase gene family. MTMR2 binds to phosphoinositide lipids through its PH-GRAM domain, and can hydrolyze phosphatidylinositol(3)-phosphate and phosphatidylinositol(3,5)-biphosphate in vitro. Mutations in MTMR2 are a cause of Charcot-Marie-Tooth disease type 4B, an autosomal recessive demyelinating neuropathy. The protein can self-associate and form heteromers with MTMR5 and MTMR12. MTMR2 contains a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an active PTP domain, a SET-interaction domain, a coiled-coil region, and a C-terminal PDZ domain. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Members in this cd include Drosophila, sea urchins, mosquitos, bees, ticks, and anemones. Length = 148

>gnl|CDD|241510 cd13356, PH-GRAM_MTMR2_mammal-like, Myotubularian related 2 protein (MTMR2) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 90.8 bits (225), Expect = 1e-23
 Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 20/147 (13%)

Query: 58  DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
           ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV++
Sbjct: 2   EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIN 61

Query: 118 ---------------IKLNTRSNDIWFWLHKLKKSLED-EMLFDEVQQYAFPVSHKLCRI 161
                            L     DI       K        +F+ + +YAFPVS+ L   
Sbjct: 62  RVEKIGGASSRGENSYGLEIVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLF 121

Query: 162 VSSIIEYTDNYFRKMGWNIMNQYAELR 188
                EY +  F + GW + +   E R
Sbjct: 122 A---FEYKEV-FPENGWKLYDPLLEYR 144

MTMR2 is a member of the myotubularin protein phosphatase gene family. MTMR2 binds to phosphoinositide lipids through its PH-GRAM domain, and can hydrolyze phosphatidylinositol(3)-phosphate and phosphatidylinositol(3,5)-biphosphate in vitro. Mutations in MTMR2 are a cause of Charcot-Marie-Tooth disease type 4B, an autosomal recessive demyelinating neuropathy. The protein can self-associate and form heteromers with MTMR5 and MTMR12. MTMR2 contains a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an active PTP domain, a SET-interaction domain, a coiled-coil region, and a C-terminal PDZ domain. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date.Members in this cd include mammals, chickens, anoles, human body lice, and aphids. Length = 144

>gnl|CDD|241512 cd13358, PH-GRAM_MTMR1, Myotubularian related 1 protein (MTMR1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 87.6 bits (217), Expect = 2e-22
 Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 21/147 (14%)

Query: 58  DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
           ++ PL PGE I+   ++V Y+CP+SG   G L++T++KLYF+S++R+ P++++V LGV+S
Sbjct: 12  EEAPLFPGETIKAIVKDVMYICPFSGAVSGTLTITDFKLYFKSVERDPPFILDVNLGVIS 71

Query: 118 ----------------IKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRI 161
                           I++  +      + +K ++  + E+ F+ + ++AFP+SH L   
Sbjct: 72  RVEKIGVQSHGDNSCGIEIVCKDMRNPRFAYKQEEQSKLEI-FENLSKHAFPLSHGLPLF 130

Query: 162 VSSIIEYTDNYFRKMGWNIMNQYAELR 188
             S  E     F   GW + +  AE +
Sbjct: 131 AFSYKE----KFPVDGWKVYDPVAEYK 153

MTMR1 is a member of the myotubularin protein phosphatase gene family. MTMR1 binds to phosphoinositide lipids through its PH-GRAM domain, and can hydrolyze phosphatidylinositol(3)-phosphate and phosphatidylinositol(3,5)-biphosphate in vitro. MTMR1 contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an active PTP domain, a SET-interaction domain, a coiled-coil region, and a C-terminal PDZ domain. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Length = 153

>gnl|CDD|241377 cd13223, PH-GRAM_MTM-like, Myotubularian 1 and related proteins Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase

 Score = 81.8 bits (203), Expect = 9e-21
 Identities = 27/46 (58%), Positives = 42/46 (91%)

Query: 72  AREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
           A++VTY+CP+SGP +G L +TNY+LYF+S++R+ P+V++VPLGV+S
Sbjct: 3   AKDVTYICPFSGPVKGTLYITNYRLYFKSLERDPPFVLDVPLGVIS 48

MTM1, MTMR1, and MTMR2 are members of the myotubularin protein phosphatase gene family. They contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an active PTP domain, a SET-interaction domain, and a C-terminal coiled-coil region. In addition MTMR1 (Myotubularian related 1 protein) and MTMR2 (Myotubularian related 2 protein) contain a C-terminal PDZ domain. Mutations in MTMR2 are a cause of Charcot-Marie-Tooth disease type 4B, an autosomal recessive demyelinating neuropathy. The protein can self-associate and form heteromers with MTMR5 and MTMR12. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Length = 94

>gnl|CDD|241509 cd13355, PH-GRAM_MTM1, Myotubularian 1 protein (MTM1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 77.5 bits (191), Expect = 2e-18
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 25/134 (18%)

Query: 45  PSNNNEPIQTSRPDDLPLLPGE--IIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSID 102
              + + ++    +D+P LPGE  I     +EV Y+CP++GP +G + +TNY+LYFRS++
Sbjct: 10  KRTSRDGLKMELLEDVPRLPGEERITD---KEVIYICPFNGPVKGRVYITNYRLYFRSLE 66

Query: 103 RETPYVVEVPLGVVSI--KL--------NTRSNDIW--------FWLHKLKKSLEDEMLF 144
            +    ++VPLGV+S   K+        N+   DI         F L +   S  D  +F
Sbjct: 67  ADPVVTLDVPLGVISRIEKMGGASSRGENSYGLDITCKDMRNLRFALKQEGHSRRD--IF 124

Query: 145 DEVQQYAFPVSHKL 158
           + + +YAFP+SH L
Sbjct: 125 EILTKYAFPLSHGL 138

MTM1 is a member of the myotubularin protein phosphatase gene family. It is required for muscle cell differentiation and mutations in this gene have been identified as being responsible for X-linked myotubular myopathy, a severe congenital muscle disorder characterized by defective muscle cell development. Since its initial discovery, there have been an additional 14 myotubularin-related proteins identified. MTM1 binds to phosphoinositide lipids through its PH-GRAM domain, and can hydrolyze phosphatidylinositol(3)-phosphate and phosphatidylinositol(3,5)-biphosphate in vitro. The protein can self-associate and form heteromers with MTMR12. MTM1 contains a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an active PTP domain, a SET-interaction domain, and a C-terminal coiled-coil region. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. All MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE and PH domains C-terminal to the coiled-coil region. Length = 152

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 61.5 bits (150), Expect = 6e-13
 Identities = 24/48 (50%), Positives = 37/48 (77%), Gaps = 1/48 (2%)

Query: 71  FAREVTYLCPY-SGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
             ++VTY+CP+  GP  G L +TNY+LYF+S +R++P  ++VPLGV+S
Sbjct: 2   EKKDVTYICPFHVGPVEGTLYLTNYRLYFKSKERDSPTELDVPLGVIS 49

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 41.8 bits (99), Expect = 6e-06
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 61  PLLPGEIIQGFAREVTYLCPYS--GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
            L   E +        Y C  S  GP +G L ++NY+L FRS        V +PL  ++
Sbjct: 1   KLPEEEKLIA-----DYSCYLSRTGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADIT 54

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 62  LLPGEIIQGFAREVTYLCPYS---GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
           L P E +        Y C       P +G L +TN +L FRS       V+ +PL  + 
Sbjct: 1   LPPEEKLIA-----DYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTVLVIPLADIE 54

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
KOG4471|consensus	717		99.96
KOG1089|consensus	573		98.86
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	98.42
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	98.03
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	97.43
KOG3294|consensus	261		97.06
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	97.03
smart00683	55	DM16 Repeats in sea squirt COS41.4, worm R01H10.6,	96.51
KOG1090|consensus	1732		96.02
PF08000	124	bPH_1: Bacterial PH domain; InterPro: IPR012544 Th	95.97
PF14470	96	bPH_3: Bacterial PH domain	94.96
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	92.86
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	90.86
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	83.09

>KOG4471|consensus

Probab=99.96  E-value=1.8e-30  Score=246.20  Aligned_cols=126  Identities=31%  Similarity=0.627  Sum_probs=118.9

Q ss_pred             CCCCCCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee--ccCC-----------
Q psy8646          56 RPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI--KLNT-----------  122 (191)
Q Consensus        56 ~~~~~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr--Kigg-----------  122 (191)
                      .++.+++||||.|++.+    |+|||.|++.|+|.||||||||++.+.+++++++||||+|.+  |+||           
T Consensus        30 ~~~~~~~L~GE~i~~~~----y~c~f~G~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~  105 (717)
T KOG4471|consen   30 LQVPFPLLPGESIIDEK----YICPFLGAVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLE  105 (717)
T ss_pred             ccCcccccCCcccccce----ecccccccccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEE
Confidence            57899999999998776    999999999999999999999999999889999999999999  8885           


Q ss_pred             -CCCce--EEEecccCCchhhHHHHHHHhhccccCCCccccccccceeeccCccCCCC------cEeech--HHHHHhc
Q psy8646         123 -RSNDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMG------WNIMNQ--YAELREN  190 (191)
Q Consensus       123 -rg~D~--lrFa~k~~~~~~~~~vfe~L~~~afPls~~~~LF~~~AF~Y~~n~~~~nG------W~IYdp--~~Ey~Rq  190 (191)
                       .|+||  +||+|+++++. |+++||.|.+++||+.+...||   ||.|.. .++.||      |.+|+|  +.||+||
T Consensus       106 i~CKDmr~lR~~fk~~~q~-r~~~~e~L~~~~~p~~~~~~LF---aF~~~~-~~~~ng~e~~~~~~l~~P~~~~E~~r~  179 (717)
T KOG4471|consen  106 ITCKDMRNLRCAFKQEEQC-RRDWFERLNRAAFPPAKSEDLF---AFAYHA-WFPVNGSENGQHWKLYDPMFKNEYRRQ  179 (717)
T ss_pred             EEeccccceeeecCccccc-HHHHHHHHHHhcCCcccchhhh---hcccHh-hcCCCCccccccccccChhhHhHHHhc
Confidence             36799  99999999988 8899999999999999999999   999998 888888      999999  9999997

>KOG1089|consensus

Probab=98.86  E-value=6.2e-09  Score=99.89  Aligned_cols=115  Identities=14%  Similarity=0.171  Sum_probs=84.6

Q ss_pred             ecceEEecCCCC---ceeEEEEEEeeEEEEeecC--CCCceEEeecceeeee--cc---------CC----CCCceEEEe
Q psy8646          72 AREVTYLCPYSG---PARGILSVTNYKLYFRSID--RETPYVVEVPLGVVSI--KL---------NT----RSNDIWFWL  131 (191)
Q Consensus        72 a~~V~ylcp~~G---~v~G~L~iTNYrL~F~s~d--~~~~~~l~vPLg~Isr--Ki---------gg----rg~D~lrFa  131 (191)
                      ..+|...-+...   ++.|+|++|.+|++|....  .+..+.+..+...|+.  |.         |+    +|+|+..|+
T Consensus        12 v~~v~l~~~~~~~~~~~~Gtl~lt~~hli~~~~~~~~~~~~e~w~l~~~i~~v~k~~~~~~~~~~g~~i~l~CK~~~~~~   91 (573)
T KOG1089|consen   12 VHNVELHDRENPVTLALVGTLLLTTHHLIFKILQCRQANSKELWLLHDNIDSVEKDPSTFKNSTSGGPITLKCKDFRVIS   91 (573)
T ss_pred             ecceeEecCCCCccccccceEEEeeceeeeeecccccccchhhccccchHhhhccCcceeeccccCCchhhhhhcceEEE
Confidence            355555555433   6899999999999998665  1234456666666665  43         22    788996666


Q ss_pred             cccCCchhhHHHHHHHhhccccCCCccccccccceeeccCcc-CCC--CcEeechHHHHHhc
Q psy8646         132 HKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYF-RKM--GWNIMNQYAELREN  190 (191)
Q Consensus       132 ~k~~~~~~~~~vfe~L~~~afPls~~~~LF~~~AF~Y~~n~~-~~n--GW~IYdp~~Ey~Rq  190 (191)
                      +......++++|+++|.+++-+ .+..++|   ||.|.++.- .++  ||..+||++||+||
T Consensus        92 ~~i~~~~e~~~v~~s~~~ls~~-~~~~~ly---~f~y~~~~~~~~~~~gw~~fd~~~ef~r~  149 (573)
T KOG1089|consen   92 FLIPDDLECRDVYSSIENLSNI-DSILQLY---AFFYAPNFQNLEDPSGWKMFDPESEFDRM  149 (573)
T ss_pred             EeccchHHHHHHHHHHHHhccc-Ccccccc---ccccCCcccccccccCceecchHhHHHHH
Confidence            6655555799999999999985 4556799   999998543 235  99999999999997

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=98.42  E-value=5.6e-07  Score=61.36  Aligned_cols=52  Identities=35%  Similarity=0.476  Sum_probs=42.9

Q ss_pred             CCCCceeEEeecceEEecCCC--CceeEEEEEEeeEEEEeecCCCCce-EEeecceeeee
Q psy8646          62 LLPGEIIQGFAREVTYLCPYS--GPARGILSVTNYKLYFRSIDRETPY-VVEVPLGVVSI  118 (191)
Q Consensus        62 LLPGE~i~~~a~~V~ylcp~~--G~v~G~L~iTNYrL~F~s~d~~~~~-~l~vPLg~Isr  118 (191)
                      |.++|.++..     |-|.+.  +++.|+|+|||++|+|.+....... .+.+||..|.+
T Consensus         2 l~~~E~l~~~-----~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~   56 (61)
T smart00568        2 LPEEEKLIAD-----YSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITR   56 (61)
T ss_pred             cCCCcEEEEE-----EEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeE
Confidence            5678888664     888886  6899999999999999996554444 89999998887

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=98.03  E-value=1.8e-05  Score=55.15  Aligned_cols=55  Identities=25%  Similarity=0.268  Sum_probs=36.2

Q ss_pred             CCCCCCCceeEEeecceEEecCCCC---ceeEEEEEEeeEEEEeecCCCCce-EEeecceeeee
Q psy8646          59 DLPLLPGEIIQGFAREVTYLCPYSG---PARGILSVTNYKLYFRSIDRETPY-VVEVPLGVVSI  118 (191)
Q Consensus        59 ~~~LLPGE~i~~~a~~V~ylcp~~G---~v~G~L~iTNYrL~F~s~d~~~~~-~l~vPLg~Isr  118 (191)
                      .+.|.++|.++..     |-|.+..   ++.|+|+|||++|.|.+....... .+.+||.-|..
T Consensus         6 ~F~lp~~E~li~~-----~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~   64 (69)
T PF02893_consen    6 LFKLPEEERLIEE-----YSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKS   64 (69)
T ss_dssp             -----TT--EEEE-----EEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEE
T ss_pred             cccCCCCCeEEEE-----EEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeE
Confidence            3556667777554     6676654   799999999999999996544444 89999988876

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=97.43  E-value=0.00025  Score=53.39  Aligned_cols=62  Identities=19%  Similarity=0.144  Sum_probs=40.2

Q ss_pred             CCCCCCCCCceeEEeecceEE-ecCCC--CceeEEEEEEeeEEEEeecCCCCceEEeecceeeee
Q psy8646          57 PDDLPLLPGEIIQGFAREVTY-LCPYS--GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI  118 (191)
Q Consensus        57 ~~~~~LLPGE~i~~~a~~V~y-lcp~~--G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr  118 (191)
                      ..++.|.|||++.....+|-. =...-  ....|+|+||+|||+|..........+.+||..|..
T Consensus         5 s~~p~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~   69 (89)
T PF11605_consen    5 SGRPVLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISH   69 (89)
T ss_dssp             CS-C---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEE
T ss_pred             ccCcccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEE
Confidence            466789999999998888853 22211  234899999999999975544344589999999888

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>KOG3294|consensus

Probab=97.06  E-value=0.0017  Score=57.47  Aligned_cols=62  Identities=24%  Similarity=0.312  Sum_probs=46.7

Q ss_pred             CCCCCCceeEEeecceEE--ec------CCCCceeEEEEEEeeEEEEeecC-CCCceEEeecceeeee-ccC
Q psy8646          60 LPLLPGEIIQGFAREVTY--LC------PYSGPARGILSVTNYKLYFRSID-RETPYVVEVPLGVVSI-KLN  121 (191)
Q Consensus        60 ~~LLPGE~i~~~a~~V~y--lc------p~~G~v~G~L~iTNYrL~F~s~d-~~~~~~l~vPLg~Isr-Kig  121 (191)
                      +-++-||.|......|-.  .|      -+.|..+|+|+|||||++|.+.. +|.-..|++|+-.|-. |+.
T Consensus        14 vl~~n~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~kln   85 (261)
T KOG3294|consen   14 VLLYNGESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVKLN   85 (261)
T ss_pred             eEecCCcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhceec
Confidence            568889999988888843  23      24478999999999999998877 4444478888866666 544

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=97.03  E-value=0.0018  Score=59.49  Aligned_cols=92  Identities=23%  Similarity=0.260  Sum_probs=68.3

Q ss_pred             CCCCCCCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee------ccCC------
Q psy8646          55 SRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI------KLNT------  122 (191)
Q Consensus        55 ~~~~~~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr------Kigg------  122 (191)
                      .+-..+.|||+|.|....+.|-.++.-.|.+ |+++|||-|+..-+.-+ ..|-++||+-.|..      |-|-      
T Consensus       144 i~~~~L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~n-e~fNVSiPylqi~~i~ir~SKfG~aLVieT  221 (339)
T PF07289_consen  144 IRDGQLKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMN-ESFNVSIPYLQIKSIRIRDSKFGPALVIET  221 (339)
T ss_pred             eeCCeEeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCC-ccccccchHhhheeeeeeccccceEEEEEE
Confidence            3457799999999999999999999998999 99999999998855544 46899999965555      3331      


Q ss_pred             --CCCce-EEEecccCCchhhHHHHHHHhhc
Q psy8646         123 --RSNDI-WFWLHKLKKSLEDEMLFDEVQQY  150 (191)
Q Consensus       123 --rg~D~-lrFa~k~~~~~~~~~vfe~L~~~  150 (191)
                        .+--+ |=|=-+++..  -.++|..++++
T Consensus       222 ~~~sGgYVLGFRvDP~Er--L~~l~KEi~sL  250 (339)
T PF07289_consen  222 SESSGGYVLGFRVDPEER--LQELFKEIQSL  250 (339)
T ss_pred             eccCCcEEEEEEcCHHHH--HHHHHHHHHHH
Confidence              11134 5555566532  57777777663

It consists of eukaryotic proteins of around 375 residues in length.

>smart00683 DM16 Repeats in sea squirt COS41

Probab=96.51  E-value=0.02  Score=40.05  Aligned_cols=51  Identities=20%  Similarity=0.174  Sum_probs=40.8

Q ss_pred             ceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee
Q psy8646          66 EIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI  118 (191)
Q Consensus        66 E~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr  118 (191)
                      |.+..+-..|--+.-..|-. |+|+|||-|++.-+... +.|-++||+..|..
T Consensus         1 E~v~~~~~~Ved~kgn~G~~-G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~   51 (55)
T smart00683        1 ERVLTRINGVEDTKGNNGDL-GVFFVTNLRLVWHSDTN-PRFNISVGYLQITN   51 (55)
T ss_pred             CEEEeeecCeEecCCCCCCe-eEEEEEeeEEEEEeCCC-CceEEEEcceeEEE
Confidence            56667777777777777865 99999999999977765 46899999987764

4, worm R01H10.6, fly CG1126 etc.

>KOG1090|consensus

Probab=96.02  E-value=0.007  Score=62.66  Aligned_cols=99  Identities=23%  Similarity=0.395  Sum_probs=62.1

Q ss_pred             CCCCCCCCCceeEEeecceEEecCCC-------------CceeEEEEEEeeEEEEeecCCC-----CceEEeecceeeee
Q psy8646          57 PDDLPLLPGEIIQGFAREVTYLCPYS-------------GPARGILSVTNYKLYFRSIDRE-----TPYVVEVPLGVVSI  118 (191)
Q Consensus        57 ~~~~~LLPGE~i~~~a~~V~ylcp~~-------------G~v~G~L~iTNYrL~F~s~d~~-----~~~~l~vPLg~Isr  118 (191)
                      .-++-|||||.++..-=++ ||-|.-             =|..|.|++||||++|+...-+     ...+=.+|++..-+
T Consensus       783 ~~~P~LlpGE~lv~D~lrc-yLlpdgrE~e~~~~~~~~LlPAeGalFLTnYRVIFkG~p~Dpl~~eqviVrtfPlasl~k  861 (1732)
T KOG1090|consen  783 NFDPVLLPGEFLVSDPLRC-YLLPDGRESEMSLNRLENLLPAEGALFLTNYRVIFKGKPVDPLATEQVIVRTFPLASLEK  861 (1732)
T ss_pred             CCCccccCchhhccCCceE-EEecCcccccccccccccccccCcceEEeeeEEEecCCCCCcccccceEEEEeehhhhhh
Confidence            3678999999987543334 554431             1688999999999999865433     23466889987777


Q ss_pred             --ccCC----------CCC-----ce--EEEecccCCchhhHHHHH-HHhhccccCCC
Q psy8646         119 --KLNT----------RSN-----DI--WFWLHKLKKSLEDEMLFD-EVQQYAFPVSH  156 (191)
Q Consensus       119 --Kigg----------rg~-----D~--lrFa~k~~~~~~~~~vfe-~L~~~afPls~  156 (191)
                        ||..          .|=     -|  ++.||+.+-..+..++|. .|.++-.|...
T Consensus       862 eKkisv~~~~~dQll~~Glqlrs~~fql~k~Afd~ev~~d~~E~frk~l~K~r~p~d~  919 (1732)
T KOG1090|consen  862 EKKISVKKLIPDQLLEKGLQLRSIIFQLSKCAFDIEVAFDEDEIFRKALEKFREPIDT  919 (1732)
T ss_pred             hhhhhhhccChHHHHHhcchhhhHHHHHHHhhcCccccccHHHHHHHHHHHhcCCccc
Confidence              6642          111     12  555776544433455665 45556666543

>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins

Probab=95.97  E-value=0.032  Score=44.47  Aligned_cols=79  Identities=18%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             CCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecC---CCCceEEeecceeeee-cc--CCCCC--------
Q psy8646          60 LPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSID---RETPYVVEVPLGVVSI-KL--NTRSN--------  125 (191)
Q Consensus        60 ~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d---~~~~~~l~vPLg~Isr-Ki--ggrg~--------  125 (191)
                      .-|+|||+|+..     |     ..++..+.+||+||++.-..   ..+.....+|+.-|.. .+  .|..+        
T Consensus        25 ~~L~~gE~I~~a-----y-----k~iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki~   94 (124)
T PF08000_consen   25 PLLLDGEEIEAA-----Y-----KLIRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKIW   94 (124)
T ss_dssp             GGSSTT--EEEE-----E-----EESSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEEE
T ss_pred             HhcCCCCeeeee-----e-----hhhceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEEE
Confidence            458999999664     4     34589999999999997643   3445678999988888 44  23222        


Q ss_pred             ----ce-EEEecccCCchhhHHHHHHHhhc
Q psy8646         126 ----DI-WFWLHKLKKSLEDEMLFDEVQQY  150 (191)
Q Consensus       126 ----D~-lrFa~k~~~~~~~~~vfe~L~~~  150 (191)
                          .+ +.+.|+...  .-.+++..|.++
T Consensus        95 i~~~~~~i~~~f~k~~--di~~i~k~L~~~  122 (124)
T PF08000_consen   95 ISGQGFPIEFEFKKKT--DIYEIYKALAEY  122 (124)
T ss_dssp             ETTESSEEEEEEGTTS--HHHHHHHHHHHH
T ss_pred             ECCCcEEEEEecCCCC--CHHHHHHHHHHH
Confidence                33 455555532  257777777664

; PDB: 3DCX_E 3HSA_C 3B77_D.

>PF14470 bPH_3: Bacterial PH domain

Probab=94.96  E-value=0.26  Score=35.28  Aligned_cols=83  Identities=17%  Similarity=0.119  Sum_probs=51.2

Q ss_pred             CCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCC-CCceEEeecceeeee---ccC---C-----CCCceEE
Q psy8646          62 LLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDR-ETPYVVEVPLGVVSI---KLN---T-----RSNDIWF  129 (191)
Q Consensus        62 LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~-~~~~~l~vPLg~Isr---Kig---g-----rg~D~lr  129 (191)
                      |.+||+|...+.-..-  ...+...|.|.+||=||+|..... ......++|+.-|..   +-|   +     -+++.++
T Consensus         1 L~~~E~I~~~~~~~~~--~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~~~~~~~   78 (96)
T PF14470_consen    1 LKEDEEIEYVAVGSYN--YFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIETNGEKIK   78 (96)
T ss_pred             CcCCCEEEEEEEEEEe--ecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEECCEEEE
Confidence            6789999776432211  113566799999999999987752 234579999988777   222   1     1223355


Q ss_pred             EecccCCchhhHHHHHHHh
Q psy8646         130 WLHKLKKSLEDEMLFDEVQ  148 (191)
Q Consensus       130 Fa~k~~~~~~~~~vfe~L~  148 (191)
                      |..-+.+  ..+.+++.++
T Consensus        79 i~~i~k~--~~~~~~~~i~   95 (96)
T PF14470_consen   79 IDNIQKG--DVKEFYEYIK   95 (96)
T ss_pred             EEEcCHH--HHHHHHHHHh
Confidence            5433332  2577777665

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=92.86  E-value=0.76  Score=42.51  Aligned_cols=59  Identities=29%  Similarity=0.376  Sum_probs=44.1

Q ss_pred             CCCCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee
Q psy8646          58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI  118 (191)
Q Consensus        58 ~~~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr  118 (191)
                      ....|.|||.+++.-..|-=.=.+.| -+|+|+|||-||+.-+.... ..-++|=+.+|..
T Consensus        15 ~~l~lr~GE~~i~~~~~VEDtKGN~G-~~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~   73 (339)
T PF07289_consen   15 SQLKLRPGEFIIDRLDPVEDTKGNNG-DRGRLVVTNLRLIWHSLKRP-RINLSIGYNCITN   73 (339)
T ss_pred             hhcccccceEEEEeeeceeeccCCCC-CeeEEEEEeeeeEEeccCCC-ceeEEeeceeEEE
Confidence            45778899999887666643334444 56999999999999887654 4778888877766

It consists of eukaryotic proteins of around 375 residues in length.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=90.86  E-value=0.77  Score=45.92  Aligned_cols=86  Identities=21%  Similarity=0.152  Sum_probs=51.3

Q ss_pred             CCCCCCCceeEEeecceEE----ecCCCCceeEEEEEEeeEEEEeecC---CCCceEEee--cceeeee--ccCC-----
Q psy8646          59 DLPLLPGEIIQGFAREVTY----LCPYSGPARGILSVTNYKLYFRSID---RETPYVVEV--PLGVVSI--KLNT-----  122 (191)
Q Consensus        59 ~~~LLPGE~i~~~a~~V~y----lcp~~G~v~G~L~iTNYrL~F~s~d---~~~~~~l~v--PLg~Isr--Kigg-----  122 (191)
                      +.+|..||.|++....++-    =+-..-+=.|.|++|||-|||.+..   -+++..+|+  .|..+-+  +.|-     
T Consensus       200 ~~~l~~~E~IL~idgt~~tqPVl~hig~saWPGRLTLTn~ALYFEa~gv~sy~~a~r~DLs~d~~q~Vkp~~tGP~Ga~L  279 (683)
T PF04842_consen  200 SLELAEDEKILDIDGTATTQPVLQHIGISAWPGRLTLTNHALYFEAIGVVSYDKAVRYDLSKDLKQVVKPELTGPWGARL  279 (683)
T ss_pred             ccccCCCcEEEEecCCCCCCchhhccccccCCceeEeecceeeeeecccccCCCceEEECCCCccceecccccCCCcccc
Confidence            4689999999987655321    0111124579999999999998874   234444444  3344444  4441     


Q ss_pred             -------CCCce---EEEecc-cCCchhhHHHHH
Q psy8646         123 -------RSNDI---WFWLHK-LKKSLEDEMLFD  145 (191)
Q Consensus       123 -------rg~D~---lrFa~k-~~~~~~~~~vfe  145 (191)
                             ++-+.   +.|=|. ..++. |||..=
T Consensus       280 FDkAV~ykS~s~sEpvvlEFpel~g~~-RRD~Wl  312 (683)
T PF04842_consen  280 FDKAVMYKSSSLSEPVVLEFPELKGHT-RRDYWL  312 (683)
T ss_pred             cceeeEEecCCCCCceEEEccccCCCc-hHHHHH
Confidence                   12233   666666 35666 888753

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=83.09  E-value=1.8  Score=34.06  Aligned_cols=26  Identities=27%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             EecCCCCceeEEEEEEeeEEEEeecCC
Q psy8646          77 YLCPYSGPARGILSVTNYKLYFRSIDR  103 (191)
Q Consensus        77 ylcp~~G~v~G~L~iTNYrL~F~s~d~  103 (191)
                      .+.|. ..+.|+|.||+.+|||...++
T Consensus        11 mVtPl-~vvpG~l~ITt~~lyF~~d~~   36 (108)
T cd01201          11 LIAPG-VVVKGTLSITTTEIFFEVDER   36 (108)
T ss_pred             EEEEE-EEeccEEEEecCEEEEEECCc
Confidence            44554 567999999999999987654

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
1lw3_A	657	Crystal Structure Of Myotubularin-Related Protein 2		3e-18
1zsq_A	528	Crystal Structure Of Mtmr2 In Complex With Phosphat		7e-18

>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2 Complexed With Phosphate Length = 657

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 22/145 (15%)
Query: 61  PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVV---- 116
           PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+    
Sbjct: 80  PLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVE 139
Query: 117 -----------SIKLNTRSNDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVS 163
                      S  L T   DI    + HK  +      +F+ + +YAFPVS+ L     
Sbjct: 140 KIGGASSRGENSYGLETVCKDIRNLRFAHK-PEGRTRRSIFENLMKYAFPVSNNLPLFA- 197
Query: 164 SIIEYTDNYFRKMGWNIMNQYAELR 188
              EY +  F + GW + +   E R
Sbjct: 198 --FEYKE-VFPENGWKLYDPLLEYR 219

>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With Phosphatidylinositol 3-Phosphate Length = 528

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 22/145 (15%)
Query: 61  PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVV---- 116
           PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV+    
Sbjct: 8   PLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVE 67
Query: 117 -----------SIKLNTRSNDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVS 163
                      S  L T   DI    + HK  +      +F+ + +YAFPVS+ L     
Sbjct: 68  KIGGASSRGENSYGLETVCKDIRNLRFAHK-PEGRTRRSIFENLMKYAFPVSNNLPLFA- 125
Query: 164 SIIEYTDNYFRKMGWNIMNQYAELR 188
              EY +  F + GW + +   E R
Sbjct: 126 --FEYKE-VFPENGWKLYDPLLEYR 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	6e-18
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	1e-16
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	5e-06

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Length = 657

 Score = 80.0 bits (196), Expect = 6e-18
 Identities = 66/220 (30%), Positives = 102/220 (46%), Gaps = 36/220 (16%)

Query: 1   MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEPAQPSNN------------ 48
           ME  SS E L S+       S DSL S S S S NS   +  +  S++            
Sbjct: 4   METSSSCESLGSQPAAARPPSVDSLSSASTSHSENSVHTKSASVVSSDSISTSADNFSPD 63

Query: 49  ----NEPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRE 104
                E  + +  ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+
Sbjct: 64  LRVLRESNKLAEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD 123

Query: 105 TPYVVEVPLGVVS---------------IKLNTRSNDIWFW-LHKLKKSLEDEMLFDEVQ 148
            P+V++  LGV++                 L T   DI         +      +F+ + 
Sbjct: 124 PPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLM 183

Query: 149 QYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELR 188
           +YAFPVS+     +          F + GW + +   E R
Sbjct: 184 KYAFPVSN----NLPLFAFEYKEVFPENGWKLYDPLLEYR 219

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Length = 528

 Score = 75.7 bits (185), Expect = 1e-16
 Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 20/144 (13%)

Query: 55  SRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLG 114
           +  ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LG
Sbjct: 2   ASMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLG 61

Query: 115 VV---------------SIKLNTRSNDIWFW-LHKLKKSLEDEMLFDEVQQYAFPVSHKL 158
           V+               S  L T   DI         +      +F+ + +YAFPVS+  
Sbjct: 62  VINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSN-- 119

Query: 159 CRIVSSIIEYTDNYFRKMGWNIMN 182
              +          F + GW + +
Sbjct: 120 --NLPLFAFEYKEVFPENGWKLYD 141

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} Length = 512

 Score = 44.9 bits (105), Expect = 5e-06
 Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 12/125 (9%)

Query: 75  VTYLCPYS---GPARGILSVTNYKLYFRSIDRETPYV-------VE-VPLGVVSIKLNTR 123
           V  L  +S       G L +T   L F    ++  ++       VE + L      L  +
Sbjct: 12  VKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQKETWILHHHIASVEKLALTTSGCPLVIQ 71

Query: 124 SNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQ 183
             +       + +  +   +++ + Q +    ++      S     ++  R  GW +++ 
Sbjct: 72  CKNFRTVHFIVPRERDCHDIYNSLLQLSKQAKYEDLY-AFSYNPKQNDSERLQGWQLIDL 130

Query: 184 YAELR 188
             E +
Sbjct: 131 AEEYK 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	100.0
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	99.97
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	99.76
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	98.22
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	98.13
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	95.95
3hsa_A	126	Pleckstrin homology domain; YP_926556.1, structura	95.38
1zyi_A	171	Methylosome subunit picln; PH domain, cell volume	91.89
3b77_A	193	Uncharacterized protein; pleckstrin-homology domai	83.99

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=100.00  E-value=2.2e-40  Score=316.67  Aligned_cols=185  Identities=38%  Similarity=0.645  Sum_probs=119.6

Q ss_pred             CCccchhhhccCCCCCCCCCCCCCCCCCCCccCccccCCCCCCCCC----------------CCCCCCCCCCCCCCCCCC
Q psy8646           1 MERKSSIELLNSESGHHCNASSDSLGSDSKSSSLNSKLGQEPAQPS----------------NNNEPIQTSRPDDLPLLP   64 (191)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~s~~~~~s~~~s~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~LLP   64 (191)
                      |+++++.+.++...++|+|+|+|+++|+++|+++|||++++++..+                ..|++.+.+++++++|||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LLP   83 (657)
T 1lw3_A            4 METSSSCESLGSQPAAARPPSVDSLSSASTSHSENSVHTKSASVVSSDSISTSADNFSPDLRVLRESNKLAEMEEPPLLP   83 (657)
T ss_dssp             -------------------------------------------------------------------------CCCCCCT
T ss_pred             ccccCCccccccccccccCcccccccCCCCCccccccccccccccCCCCCCCCccchhhhhhhhhcccccccCCCCccCC
Confidence            7899999999999999999999999999999999999988875544                236666777889999999


Q ss_pred             CceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee--ccCC-------------CCCce--
Q psy8646          65 GEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI--KLNT-------------RSNDI--  127 (191)
Q Consensus        65 GE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr--Kigg-------------rg~D~--  127 (191)
                      ||.|+..+++|+|+||+.|++.|+|+||||||+|.+.+.+++++++|||++|.+  |++|             +|+||  
T Consensus        84 GE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDfR~  163 (657)
T 1lw3_A           84 GENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIRN  163 (657)
T ss_dssp             TCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTTEE
T ss_pred             CeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecCCCcccCCCCceEEEEecCCcE
Confidence            999999999999999999999999999999999999887778999999999999  7753             47799  


Q ss_pred             EEEecccCCchhhHHHHHHHhhccccCCCccccccccceeeccCccCCCCcEeechHHHHHhc
Q psy8646         128 WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELREN  190 (191)
Q Consensus       128 lrFa~k~~~~~~~~~vfe~L~~~afPls~~~~LF~~~AF~Y~~n~~~~nGW~IYdp~~Ey~Rq  190 (191)
                      ++|+|+++++. +++||+.|.+++||+++..+||   ||.|++ .++++||.+|||.+||+||
T Consensus       164 ~~f~f~~~~~~-~~~v~~~L~~~~~P~~~~~~lf---AF~y~~-~~~~~Gw~~yd~~~E~~R~  221 (657)
T 1lw3_A          164 LRFAHKPEGRT-RRSIFENLMKYAFPVSNNLPLF---AFEYKE-VFPENGWKLYDPLLEYRRQ  221 (657)
T ss_dssp             EEEECCGGGCC-HHHHHHHHHHHHSSGGGTCCCG---GGTCCC-CCSSCGGGSCCHHHHHHHH
T ss_pred             EEEEeCCccch-HHHHHHHHHHHhCCCcccccce---eecccc-cccCCCceecCHHHHHHHh
Confidence            99999987665 8999999999999999988999   999999 7889999999999999997

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=99.97  E-value=1.1e-31  Score=251.81  Aligned_cols=132  Identities=39%  Similarity=0.812  Sum_probs=120.5

Q ss_pred             CCCCCCCCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee--ccCC---------
Q psy8646          54 TSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI--KLNT---------  122 (191)
Q Consensus        54 ~~~~~~~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr--Kigg---------  122 (191)
                      ++++++++|||||.|+..+++|+|+||++|++.|+|+||||||+|.+.+.+++++++|||++|.+  |++|         
T Consensus         1 ~~~~~~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~   80 (528)
T 1zsq_A            1 MASMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSY   80 (528)
T ss_dssp             ---CCCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCS
T ss_pred             CCCCCCCccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCc
Confidence            47899999999999999999999999999999999999999999999887778999999999999  7753         


Q ss_pred             ----CCCce--EEEecccCCchhhHHHHHHHhhccccCCCccccccccceeeccCccCCCCcEeechHHHHHhc
Q psy8646         123 ----RSNDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYFRKMGWNIMNQYAELREN  190 (191)
Q Consensus       123 ----rg~D~--lrFa~k~~~~~~~~~vfe~L~~~afPls~~~~LF~~~AF~Y~~n~~~~nGW~IYdp~~Ey~Rq  190 (191)
                          +|+||  ++|+|+++++. +++||+.|.+++||.++..+||   ||.|++ .++++||.+|||.+||+||
T Consensus        81 ~l~I~CKDfr~~~f~f~~~~~~-~~~v~~~L~~~~~p~~~~~~lf---aF~y~~-~~~~~gw~~y~~~~E~~R~  149 (528)
T 1zsq_A           81 GLETVCKDIRNLRFAHKPEGRT-RRSIFENLMKYAFPVSNNLPLF---AFEYKE-VFPENGWKLYDPLLEYRRQ  149 (528)
T ss_dssp             EEEEEETTTEEEEEECCGGGCC-HHHHHHHHHHHSCTTTTTCCCG---GGTCCC-CCSSCGGGSCCHHHHHHHT
T ss_pred             eEEEEccCCeEEEEEecCchHH-HHHHHHHHHHHhcCCcccccee---eeeccc-cccCCCceecCHHHHHHHc
Confidence                47799  99999987665 8999999999999999988899   999999 7889999999999999997

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=99.76  E-value=3.2e-19  Score=166.98  Aligned_cols=112  Identities=14%  Similarity=0.205  Sum_probs=89.4

Q ss_pred             EeecceEEecCCC---CceeEEEEEEeeEEEEeecCCCCceEEeecceeeee--ccCC---------CCCce--EEEecc
Q psy8646          70 GFAREVTYLCPYS---GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI--KLNT---------RSNDI--WFWLHK  133 (191)
Q Consensus        70 ~~a~~V~ylcp~~---G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr--Kigg---------rg~D~--lrFa~k  133 (191)
                      .++++|+++.+++   +++.|+|+||||||+|.+... +  .++|||+.|++  |.+.         +|+||  ++|+|+
T Consensus         7 ~~v~~V~l~~~~~~~~~~~~GtL~lTn~~LiF~~~~~-~--e~wi~~~~I~~VeK~~~~~~~~~l~I~CKDfr~~~f~f~   83 (512)
T 2yf0_A            7 TKVEQVKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQ-K--ETWILHHHIASVEKLALTTSGCPLVIQCKNFRTVHFIVP   83 (512)
T ss_dssp             EEEEECCCC--------CCEEEEEECSSEEEEEESSS-C--EEEEEGGGEEEEEECCCBTTBEEEEEEETTSCEEEEEES
T ss_pred             CccccEEEEeccCCCCCceeEEEEEECCEEEEeCCCC-C--ceEecccceeEEEEecCCCCCceEEEEecCCcEEEEEeC
Confidence            4678999887654   799999999999999998433 2  47889999999  6532         78899  999998


Q ss_pred             cCCchhhHHHHHHHhhccccCCCccccccccceeeccCcc---CCCCcEeechHHHHHhc
Q psy8646         134 LKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYTDNYF---RKMGWNIMNQYAELREN  190 (191)
Q Consensus       134 ~~~~~~~~~vfe~L~~~afPls~~~~LF~~~AF~Y~~n~~---~~nGW~IYdp~~Ey~Rq  190 (191)
                      .+.  ++++||+.|.++++|.+.. .||   ||.|+|...   .++||++|||.+||+||
T Consensus        84 ~~~--~~~~v~~sL~~~~~p~~~~-~lf---aF~y~~~~~~~~~~~gw~~yd~~~E~~R~  137 (512)
T 2yf0_A           84 RER--DCHDIYNSLLQLSKQAKYE-DLY---AFSYNPKQNDSERLQGWQLIDLAEEYKRM  137 (512)
T ss_dssp             CHH--HHHHHHHHHHHHSCCCCST-TSG---GGTCCCSCCSHHHHHHHTTCCHHHHHHHT
T ss_pred             ChH--HHHHHHHHHHhhcCCCCcc-eeE---EEeccccccccccCCCccccCHHHHHHHc
Confidence            753  3899999999999997765 599   999998332   25999999999999998

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=98.22  E-value=5e-06  Score=66.30  Aligned_cols=86  Identities=14%  Similarity=0.113  Sum_probs=61.5

Q ss_pred             CCCCCCCCCCCCCceeEEeecceE-EecC--CCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee-cc--CC----
Q psy8646          53 QTSRPDDLPLLPGEIIQGFAREVT-YLCP--YSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI-KL--NT----  122 (191)
Q Consensus        53 ~~~~~~~~~LLPGE~i~~~a~~V~-ylcp--~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr-Ki--gg----  122 (191)
                      ..+...++-|+|||.|+...++|. |...  ..+.-.|+|+||||||+|..........+.+||..|.. .+  +.    
T Consensus        16 ~~t~s~rp~L~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~fg~s   95 (145)
T 2cay_A           16 ETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRS   95 (145)
T ss_dssp             CBCTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSSSS
T ss_pred             hhccCCCcccCCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCccccC
Confidence            344557788999999999888884 4432  24677899999999999976544222689999988877 21  11    


Q ss_pred             -----------CCCceEEEecccCCch
Q psy8646         123 -----------RSNDIWFWLHKLKKSL  138 (191)
Q Consensus       123 -----------rg~D~lrFa~k~~~~~  138 (191)
                                 .+...++++|+..+..
T Consensus        96 ~Ki~l~~~p~~~~~~~~KLsFk~GGa~  122 (145)
T 2cay_A           96 PRLILFFKDPSSSTEFVQLSFRKSDGV  122 (145)
T ss_dssp             CEEEEEESSCSSTTCCEEEEESSSCCH
T ss_pred             ceEEEEecCCCCCceEEEEEEcCCCch
Confidence                       2335699999987643

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=98.13  E-value=2.2e-05  Score=61.98  Aligned_cols=60  Identities=17%  Similarity=0.103  Sum_probs=46.5

Q ss_pred             CCCCCCCCceeEEeecceE-EecCC-CCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee
Q psy8646          58 DDLPLLPGEIIQGFAREVT-YLCPY-SGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI  118 (191)
Q Consensus        58 ~~~~LLPGE~i~~~a~~V~-ylcp~-~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr  118 (191)
                      .++-|.|||.++...++|. |-... .+.-.|+|+||+|||+|..... ....+.+||..|..
T Consensus         9 ~~p~L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~   70 (140)
T 2hth_B            9 TSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN-HECCMAILLSQIVF   70 (140)
T ss_dssp             CCSCCCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC-CSCCEEEEGGGEEE
T ss_pred             CCCccCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCC-CceEEEEEhHHeee
Confidence            3456899999999888884 44322 2568899999999999976654 55789999988766

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=95.95  E-value=0.0012  Score=62.66  Aligned_cols=62  Identities=19%  Similarity=0.222  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCceeEEeecceEEecCCCC------ceeEEEEEEeeEEEEeecCCCCceEEeecceeeee
Q psy8646          54 TSRPDDLPLLPGEIIQGFAREVTYLCPYSG------PARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI  118 (191)
Q Consensus        54 ~~~~~~~~LLPGE~i~~~a~~V~ylcp~~G------~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr  118 (191)
                      +....++.|+|+|+++..-.+|..   |.|      .-.|+||||+|||+|...+..+...+.|||..|.+
T Consensus         9 ~t~s~rp~L~~~E~~l~vqd~VgL---Y~Gk~Ki~~~q~G~~yLTShRiiyvD~~~p~~~s~~l~L~~I~~   76 (566)
T 1w7p_D            9 TTSSGQPLLREGEKDIFIDQSVGL---YHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAY   76 (566)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ccccCCcccCCCceEEEeeccccc---ccCCcCCccccCceEEEEeeeEEEecCCCCcceEEEEEhHHcce
Confidence            344577889999999888777743   334      45699999999999955444344789999988887

>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*

Probab=95.38  E-value=0.064  Score=41.95  Aligned_cols=80  Identities=14%  Similarity=0.081  Sum_probs=54.9

Q ss_pred             CCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecC---CCCceEEeecceeeee-cc---CC----------
Q psy8646          60 LPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSID---RETPYVVEVPLGVVSI-KL---NT----------  122 (191)
Q Consensus        60 ~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d---~~~~~~l~vPLg~Isr-Ki---gg----------  122 (191)
                      .-|+|||.|+..     |     ..++..+.+||.||++.-..   ..+.....+|+.-|+. .+   |.          
T Consensus        26 ~~L~~gE~I~~a-----y-----k~iRD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~fDlDaElki~   95 (126)
T 3hsa_A           26 PILGDNEELQLA-----Y-----XMVRDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTFDMDAELXLW   95 (126)
T ss_dssp             GGSCTTCCEEEE-----E-----ECSSEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTTSCEEEEEEE
T ss_pred             HhcCCCCEEEEE-----e-----hhcCceEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccccCCceEEEE
Confidence            458999999654     3     34589999999999997644   3455679999988888 43   21          


Q ss_pred             -CCCce-EEEecccCCchhhHHHHHHHhhcc
Q psy8646         123 -RSNDI-WFWLHKLKKSLEDEMLFDEVQQYA  151 (191)
Q Consensus       123 -rg~D~-lrFa~k~~~~~~~~~vfe~L~~~a  151 (191)
                       .|.+. +.+-|+...  .-++++..|.++.
T Consensus        96 isg~~~pi~~~f~k~~--di~~i~k~La~~v  124 (126)
T 3hsa_A           96 ISGQHEPLVXELXRGT--DVVGIQXTIARYA  124 (126)
T ss_dssp             ETTCSSCEEEEECTTS--CHHHHHHHHHHHH
T ss_pred             EcCCceEEEEeccCcc--cHHHHHHHHHHHh
Confidence             22333 455555432  2688888887764

>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}

Probab=91.89  E-value=0.2  Score=40.88  Aligned_cols=49  Identities=16%  Similarity=0.143  Sum_probs=30.1

Q ss_pred             CCC--ceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecce
Q psy8646          63 LPG--EIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLG  114 (191)
Q Consensus        63 LPG--E~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg  114 (191)
                      -|+  |.|.....+|..+.--...-.|+|+||+=||++.+. ..  ..+.||.-
T Consensus        18 ~p~~~E~v~~~~~~v~~vl~~~~~g~GtLyVt~~~l~W~~~-~~--~G~sI~Yp   68 (171)
T 1zyi_A           18 PPGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDG-SG--LGFSLEYP   68 (171)
T ss_dssp             ---------CBCSSEEEEBTTBCCCEEEEEEETTEEEEEET-TT--EEEEESSC
T ss_pred             CCCCccceEEEcCCEEEEECCCccCceEEEEEcCEEEEEcC-CC--cEEEeecC
Confidence            577  888888888876654444457999999999999876 33  34555553

>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13

Probab=83.99  E-value=1.9  Score=35.95  Aligned_cols=83  Identities=14%  Similarity=0.068  Sum_probs=52.0

Q ss_pred             CCCCC--CceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecC---CCCceEEeecce--eeee-cc--CCCCC-ce-
Q psy8646          60 LPLLP--GEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSID---RETPYVVEVPLG--VVSI-KL--NTRSN-DI-  127 (191)
Q Consensus        60 ~~LLP--GE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d---~~~~~~l~vPLg--~Isr-Ki--ggrg~-D~-  127 (191)
                      .-|+|  ||.|...     |     ..++-.+.+||.||++.-..   ..+.....+|+.  -|+. .+  .|..+ |- 
T Consensus        20 ~~Ll~EdgE~I~~a-----y-----k~irD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAGtfDlDaE   89 (193)
T 3b77_A           20 DYVLHEDGEKIYFL-----I-----KSKTDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAGTVDLDVE   89 (193)
T ss_dssp             GGSCGGGTCCEEEE-----E-----ECSSEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCCSSCCEEE
T ss_pred             hhccCCCCCEEeee-----e-----eecceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecceeccCcc
Confidence            35889  9999654     3     34478999999999997644   245668999999  8888 44  23222 21 


Q ss_pred             EEEe-------cccCC--chhhHHHHHHHhhccc
Q psy8646         128 WFWL-------HKLKK--SLEDEMLFDEVQQYAF  152 (191)
Q Consensus       128 lrFa-------~k~~~--~~~~~~vfe~L~~~af  152 (191)
                      +.|-       ++...  ...-+++|..|...+.
T Consensus        90 lki~i~~~~~~Ief~K~~~~di~~lyk~L~~is~  123 (193)
T 3b77_A           90 IKFEIGGKHYSIDVDKKQLEHVKDLYKALLAIAE  123 (193)
T ss_dssp             EEEEETTEEEEEEEEGGGHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCceEEEEeCCcchhhHHHHHHHHHHHHH
Confidence            2221       22211  1136778888877554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d1zsqa1	125	b.55.1.8 (A:74-198) Myotubularin-related protein 2	1e-24

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.1 bits (226), Expect = 1e-24
 Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 18/118 (15%)

Query: 58  DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 117
           ++ PLLPGE I+  A++VTY+CP++G  RG L+VTNY+LYF+S++R+ P+V++  LGV++
Sbjct: 1   EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIN 60

Query: 118 -----------------IKLNTRSNDIWFWLHKLKKSLEDEMLFDEVQQYAFPVSHKL 158
                            ++   +      + HK  +      +F+ + +YAFPVS+ L
Sbjct: 61  RVEKIGGASSRGENSYGLETVCKDIRNLRFAHK-PEGRTRRSIFENLMKYAFPVSNNL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	100.0
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	98.3
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	98.14
d3dcxa1	116	Uncharacterized protein Shew0819 {Shewanella loihi	92.91
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	90.17

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-34  Score=219.32  Aligned_cols=108  Identities=43%  Similarity=0.871  Sum_probs=100.4

Q ss_pred             CCCCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee--ccCC-------------
Q psy8646          58 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI--KLNT-------------  122 (191)
Q Consensus        58 ~~~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr--Kigg-------------  122 (191)
                      |+++|||||.|+..|++|+|+||+.|++.|+|+||||||+|.+.+.+..++++|||+.|++  |+++             
T Consensus         1 ~~~~llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I   80 (125)
T d1zsqa1           1 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLET   80 (125)
T ss_dssp             CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEE
T ss_pred             CCCCcCCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEE
Confidence            6899999999999999999999999999999999999999999988888999999999999  6643             


Q ss_pred             CCCce--EEEecccCCchhhHHHHHHHhhccccCCCccccccccceeec
Q psy8646         123 RSNDI--WFWLHKLKKSLEDEMLFDEVQQYAFPVSHKLCRIVSSIIEYT  169 (191)
Q Consensus       123 rg~D~--lrFa~k~~~~~~~~~vfe~L~~~afPls~~~~LF~~~AF~Y~  169 (191)
                      +|+||  ++|+|++++++ +++||+.|+++|||+++..+||   ||.|+
T Consensus        81 ~CKDfr~~~f~f~~e~~~-~~~v~~~L~~~a~P~~~~~~LF---AF~Yk  125 (125)
T d1zsqa1          81 VCKDIRNLRFAHKPEGRT-RRSIFENLMKYAFPVSNNLPLF---AFEYK  125 (125)
T ss_dssp             EETTTEEEEEECCGGGCC-HHHHHHHHHHHSCTTTTTCCCG---GGTCC
T ss_pred             EeccCeEEEEEEcCCccH-HHHHHHHHHHhCcCCCCCcceE---EEEeC
Confidence            47799  99999987766 8999999999999999999999   99996

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=9.9e-07  Score=67.46  Aligned_cols=94  Identities=13%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             CCCCCCCCCCCCCceeEEeecceE-EecCCC--CceeEEEEEEeeEEEEeecCCCCceEEeecceeeee-cc--CC----
Q psy8646          53 QTSRPDDLPLLPGEIIQGFAREVT-YLCPYS--GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI-KL--NT----  122 (191)
Q Consensus        53 ~~~~~~~~~LLPGE~i~~~a~~V~-ylcp~~--G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr-Ki--gg----  122 (191)
                      .+.....+-|++||.++..-++|- |.....  ..-.|+|+||||||+|.....+....+.+||..|.. .+  +.    
T Consensus         8 ~~t~sg~p~L~~~E~~l~~qd~V~Ly~g~~k~~~~~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~~~~ss   87 (130)
T d2caya1           8 ETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRS   87 (130)
T ss_dssp             CBCTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSSSS
T ss_pred             hcccCCCeEccCCeEEEEEeCCEEEEECCccCccccCceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEccccCCC
Confidence            345567888999999999888884 554221  346899999999999987544334479999988877 22  21    


Q ss_pred             -----------CCCceEEEecccCCchhhHHHHHHHhh
Q psy8646         123 -----------RSNDIWFWLHKLKKSLEDEMLFDEVQQ  149 (191)
Q Consensus       123 -----------rg~D~lrFa~k~~~~~~~~~vfe~L~~  149 (191)
                                 ++..+++++|+..+   ..+.++.+++
T Consensus        88 ~KI~l~l~~~~~~~~~vklsFr~gg---~~~F~~~~~~  122 (130)
T d2caya1          88 PRLILFFKDPSSSTEFVQLSFRKSD---GVLFSQATER  122 (130)
T ss_dssp             CEEEEEESSCSSTTCCEEEEESSSC---CHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCCCEEEEEEcCCC---hHHHHHHHHH
Confidence                       23355888888754   3455555443

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.3e-06  Score=62.74  Aligned_cols=57  Identities=16%  Similarity=0.109  Sum_probs=42.3

Q ss_pred             CCCCCceeEEeecceEE-ecCCC-CceeEEEEEEeeEEEEeecCCCCceEEeecceeeee
Q psy8646          61 PLLPGEIIQGFAREVTY-LCPYS-GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI  118 (191)
Q Consensus        61 ~LLPGE~i~~~a~~V~y-lcp~~-G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr  118 (191)
                      -|.+||.++...++|.. -.+.- ..-.|+|+||||||+|... .+....+.+||..|..
T Consensus         8 ll~~~E~~l~~~~~V~lydG~~k~~~~~G~l~LTthRli~~~~-~~~~~s~~lpl~~i~~   66 (129)
T d2hthb1           8 LLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQ-KNHECCMAILLSQIVF   66 (129)
T ss_dssp             CCCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEET-TCCSCCEEEEGGGEEE
T ss_pred             CCCCCcEEEEEeCCEEeecCCCcccccceEEEEEeceEEEecC-CCCceEEEEEhHHcee
Confidence            37899999999999964 22221 2345999999999999754 3344678999988765

>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: BPHL domain
domain: Uncharacterized protein Shew0819
species: Shewanella loihica [TaxId: 359303]

Probab=92.91  E-value=0.26  Score=36.11  Aligned_cols=49  Identities=16%  Similarity=0.129  Sum_probs=36.9

Q ss_pred             CCCCCCceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecC---CCCceEEeecceeeee
Q psy8646          60 LPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSID---RETPYVVEVPLGVVSI  118 (191)
Q Consensus        60 ~~LLPGE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d---~~~~~~l~vPLg~Isr  118 (191)
                      .-|+|||.|+..     |     -.++..+.+||.||++.-..   ..+.....+|+.-|..
T Consensus        17 ~lL~~gE~i~~~-----y-----k~~rD~~~FTnkRlI~vD~qg~tGkK~~~~siPY~~I~~   68 (116)
T d3dcxa1          17 PIMGDNEQLALA-----Y-----RVIRDMFVFTNKRLILIDKQGVTGKKVSYHSVPYKAITH   68 (116)
T ss_dssp             GGSCTTCCEEEE-----E-----EETTEEEEEESSEEEEEEEESSSCCEEEEEEEEGGGEEE
T ss_pred             HhcCCCCEEEEE-----E-----EeecceEEEecceEEEEeccccccceEEEEEEehhHeEE
Confidence            458999999654     3     34477888999999997633   3445678999988887

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.5  Score=34.04  Aligned_cols=51  Identities=10%  Similarity=0.189  Sum_probs=41.3

Q ss_pred             CceeEEeecceEEecCCCCceeEEEEEEeeEEEEeecCCCCceEEeecceeeee-ccC
Q psy8646          65 GEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSI-KLN  121 (191)
Q Consensus        65 GE~i~~~a~~V~ylcp~~G~v~G~L~iTNYrL~F~s~d~~~~~~l~vPLg~Isr-Kig  121 (191)
                      .|+|+..++.|.|     -...|+|+||.=||.|.+.+.+. ..+.+++.-|-. ++.
T Consensus         5 s~~vll~v~~v~y-----KK~~GtL~l~~d~l~W~p~~~~~-~~v~~~~~~I~~~q~S   56 (108)
T d2rnrb1           5 SEEVLLIVKKVRQ-----KKQDGALYLMAERIAWAPEGKDR-FTISHMYADIKCQKIS   56 (108)
T ss_dssp             CCCCCEEEEEEEE-----SSCEEEEEECSSEEEEEESSCSS-CSEEEETTTEEEEEEC
T ss_pred             hhhheeeecceEE-----ecCCcEEEEEcCeEEEEcCCCCC-ceEEEEhhhhhceecC
Confidence            4667778888888     56789999999999999987654 558999988877 664