Psyllid ID: psy8677

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MYLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAVYCDIIEYLRRRKDSTM
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MYLKNVGLNEAfqfveahphprLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAVYCDIIEYLRRRKDSTM
Flexible Loop (DISEMBL)
MYLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYiaqhqgrfqtavYCDIIEYLRRRKDSTM
Low Complexity Region (SEG)
MYLKNVGLNEAFQFVEAHPHPRlwklladksldllslNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAVYCDIIEYLRRRKDSTM
Disordered region (IsUnstruct)
****NVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAVYCDIIEYLR*******
Disordered Region (DISOPRED)
*******LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL***IMKHAYIAQHQGRFQTAVYCDIIEYLRRRKDS**
Disordered Region (DISEMBL)
MYLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAVYCDIIEYLRRRKDSTM
Disordered Region (DISPRO)
MYLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAVYCDIIEYLRRR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAVYCDIIEYLRRRKDSTM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q9P2L0	1181	WD repeat-containing prot	yes	N/A	0.808	0.067	0.462	8e-16
A6N6J5	1170	WD repeat-containing prot	yes	N/A	0.808	0.068	0.45	2e-15
Q8BND3	1181	WD repeat-containing prot	yes	N/A	0.808	0.067	0.45	4e-15

>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 54/80 (67%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ +A QF+E +PHPRLW+LLA+ +L  L L  AEQA V C+DY G++ +K L  L
Sbjct: 678 IEKVGIKDASQFIEDNPHPRLWRLLAEAALQKLDLYTAEQAFVRCKDYQGIKFVKRLGKL 737

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +  + GRF+ A
Sbjct: 738 LSESMKQAEVVGYFGRFEEA 757

May promote CASP3 activation and TNF-stimulated apoptosis. Required for ciliogenesis.
Homo sapiens (taxid: 9606)

>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 54/80 (67%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ +A QF+E +PHPRLW+LLA+ +L  L L  A+QA V C+DY G++ +K L  L
Sbjct: 667 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKRLGNL 726

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +  + GRF+ A
Sbjct: 727 QSESMKQAEVIAYFGRFEEA 746

May promote CASP3 activation and TNF-stimulated apoptosis. Required for ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 54/80 (67%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ +A QF+E +PHPRLW+LLA+ +L  L L  A+QA V C+DY G++ +K L  L
Sbjct: 678 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKLLGNL 737

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +  + GRF+ A
Sbjct: 738 QSESMKQAEVIAYFGRFEDA 757

May promote CASP3 activation and TNF-stimulated apoptosis (By similarity). Required for ciliogenesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
417406034	1169	Putative wd40 repeat protein [Desmodus r	0.808	0.068	0.487	1e-15
260815305	1063	hypothetical protein BRAFLDRAFT_117030 [	0.858	0.079	0.482	3e-15
363732597	1167	PREDICTED: WD repeat-containing protein	0.808	0.068	0.475	4e-15
363732595	1178	PREDICTED: WD repeat-containing protein	0.808	0.067	0.475	4e-15
355728895	514	WD repeat domain 35 [Mustela putorius fu	0.808	0.155	0.475	4e-15
358422000	922	PREDICTED: WD repeat-containing protein	0.808	0.086	0.475	5e-15
410955800	662	PREDICTED: WD repeat-containing protein	0.808	0.120	0.475	5e-15
149727746	1170	PREDICTED: WD repeat-containing protein	0.808	0.068	0.475	5e-15
297480580	985	PREDICTED: WD repeat-containing protein	0.808	0.081	0.475	5e-15
338713817	1181	PREDICTED: WD repeat-containing protein	0.808	0.067	0.475	5e-15

>gi|417406034|gb|JAA49699.1| Putative wd40 repeat protein [Desmodus rotundus]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 56/80 (70%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ +A QF+E +PHPRLW+LLA+ +L  L LN AEQA V C+DY G++ +K L  L
Sbjct: 666 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLNMAEQAFVRCKDYQGIKFVKRLGNL 725

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +A + GRF+ A
Sbjct: 726 QSESMKQAEVAAYFGRFEEA 745

Source: Desmodus rotundus

Species: Desmodus rotundus

Genus: Desmodus

Family: Phyllostomidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260815305|ref|XP_002602414.1| hypothetical protein BRAFLDRAFT_117030 [Branchiostoma floridae] gi|229287723|gb|EEN58426.1| hypothetical protein BRAFLDRAFT_117030 [Branchiostoma floridae]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 2/87 (2%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           L+ VG+ +A QF+E +PHPRLW+LLA+ +L+ L L  AEQA V C+DY G++ +K L  L
Sbjct: 662 LEKVGIADASQFIEDNPHPRLWRLLAEAALEKLDLPTAEQAFVRCKDYQGIEFVKKLGNL 721

Query: 63  PDDIMKHAYIAQHQGRFQTA--VYCDI 87
             + MK+A +A +  RF+ A  VY DI
Sbjct: 722 QSEAMKNAEVAAYFKRFEEAERVYLDI 748

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363732597|ref|XP_003641123.1| PREDICTED: WD repeat-containing protein 35 isoform 1 [Gallus gallus]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 55/80 (68%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ E+ QF+E +PHPRLW+LLA+ +L  L L  AEQA V C+DY G++ +K L  L
Sbjct: 667 IEEVGIEESSQFIEDNPHPRLWRLLAEAALQKLDLQTAEQAFVRCKDYQGIKFVKRLGNL 726

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +A + GRF+ A
Sbjct: 727 QSESMKQAEVAAYFGRFEEA 746

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363732595|ref|XP_419970.3| PREDICTED: WD repeat-containing protein 35 isoform 2 [Gallus gallus]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 55/80 (68%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ E+ QF+E +PHPRLW+LLA+ +L  L L  AEQA V C+DY G++ +K L  L
Sbjct: 678 IEEVGIEESSQFIEDNPHPRLWRLLAEAALQKLDLQTAEQAFVRCKDYQGIKFVKRLGNL 737

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +A + GRF+ A
Sbjct: 738 QSESMKQAEVAAYFGRFEEA 757

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355728895|gb|AES09693.1| WD repeat domain 35 [Mustela putorius furo]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%)

Query: 3  LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
          ++ VG+ +A QF+E +PHPRLW+LLA+ +L  L L+ AEQA V C+DY G++ +K L  L
Sbjct: 15 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLHTAEQAFVRCKDYQGIKFVKRLGNL 74

Query: 63 PDDIMKHAYIAQHQGRFQTA 82
            + MK A +A + GRF+ A
Sbjct: 75 QSESMKQAEVAAYFGRFEEA 94

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|358422000|ref|XP_003585231.1| PREDICTED: WD repeat-containing protein 35, partial [Bos taurus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ +A QF+E +PHPRLW+LLA+ +L  L L+ AEQA V C+DY G++ +K L  L
Sbjct: 419 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLHTAEQAFVRCKDYQGIKFVKRLGNL 478

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +A + GRF+ A
Sbjct: 479 QSEPMKQAEVAAYFGRFEEA 498

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410955800|ref|XP_003984538.1| PREDICTED: WD repeat-containing protein 35-like, partial [Felis catus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ +A QF+E +PHPRLW+LLA+ +L  L L+ AEQA V C+DY G++ +K L  L
Sbjct: 159 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLHTAEQAFVRCKDYQGIKFVKRLGNL 218

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +A + GRF+ A
Sbjct: 219 QSESMKQAEVAAYFGRFEEA 238

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149727746|ref|XP_001503422.1| PREDICTED: WD repeat-containing protein 35-like isoform 1 [Equus caballus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ +A QF+E +PHPRLW+LLA+ +L  L L+ AEQA V C+DY G++ +K L  L
Sbjct: 667 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLHTAEQAFVRCKDYQGIKFVKRLGNL 726

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +A + GRF+ A
Sbjct: 727 QSESMKQAEVAAYFGRFEEA 746

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297480580|ref|XP_002691565.1| PREDICTED: WD repeat-containing protein 35 [Bos taurus] gi|296482390|tpg|DAA24505.1| TPA: Oseg4-like [Bos taurus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ +A QF+E +PHPRLW+LLA+ +L  L L+ AEQA V C+DY G++ +K L  L
Sbjct: 482 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLHTAEQAFVRCKDYQGIKFVKRLGNL 541

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +A + GRF+ A
Sbjct: 542 QSEPMKQAEVAAYFGRFEEA 561

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|338713817|ref|XP_003362959.1| PREDICTED: WD repeat-containing protein 35-like [Equus caballus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%)

Query: 3   LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL 62
           ++ VG+ +A QF+E +PHPRLW+LLA+ +L  L L+ AEQA V C+DY G++ +K L  L
Sbjct: 678 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLHTAEQAFVRCKDYQGIKFVKRLGNL 737

Query: 63  PDDIMKHAYIAQHQGRFQTA 82
             + MK A +A + GRF+ A
Sbjct: 738 QSESMKQAEVAAYFGRFEEA 757

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
UNIPROTKB|E1BWD7	1180	WDR35 "Uncharacterized protein	0.858	0.072	0.367	1e-09
ZFIN|ZDB-GENE-060810-148	1203	wdr35 "WD repeat domain 35" [D	0.858	0.070	0.356	2.2e-09
UNIPROTKB|F1SCU2	1186	WDR35 "Uncharacterized protein	0.808	0.067	0.375	3.5e-09
RGD|1564116	1170	Wdr35 "WD repeat domain 35" [R	0.858	0.072	0.344	1.2e-08
UNIPROTKB|Q9P2L0	1181	WDR35 "WD repeat-containing pr	0.808	0.067	0.362	1.5e-08
MGI|MGI:1921932	1181	Wdr35 "WD repeat domain 35" [M	0.858	0.071	0.344	2.5e-08
FB|FBgn0035264	1205	Oseg4 "Oseg4" [Drosophila mela	0.848	0.069	0.348	1.4e-07

UNIPROTKB|E1BWD7 WDR35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 154 (59.3 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 32/87 (36%), Positives = 48/87 (55%)

Query:     3 LKNVGLNEAFQFVEAHPHPRXXXXXXXXXXXXXXXNHAEQALVNCQDYAGLQLIKSLRAL 62
             ++ VG+ E+ QF+E +PHPR                 AEQA V C+DY G++ +K L  L
Sbjct:   680 IEEVGIEESSQFIEDNPHPRLWRLLAEAALQKLDLQTAEQAFVRCKDYQGIKFVKRLGNL 739

Query:    63 PDDIMKHAYIAQHQGRFQTA--VYCDI 87
               + MK A +A + GRF+ A  +Y D+
Sbjct:   740 QSESMKQAEVAAYFGRFEEAERMYLDM 766

GO:0005813 "centrosome" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

ZFIN|ZDB-GENE-060810-148 wdr35 "WD repeat domain 35" [Danio rerio (taxid:7955)]

 Score = 151 (58.2 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/87 (35%), Positives = 47/87 (54%)

Query:     3 LKNVGLNEAFQFVEAHPHPRXXXXXXXXXXXXXXXNHAEQALVNCQDYAGLQLIKSLRAL 62
             ++ VG+ +A QF+E +PHPR                 AEQA V C+DY G++ +K L  L
Sbjct:   700 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLKMAEQAFVRCRDYQGIEFVKRLSNL 759

Query:    63 PDDIMKHAYIAQHQGRFQTA--VYCDI 87
               + MK A +A +  RF+ A  +Y D+
Sbjct:   760 QSEAMKQAEVAAYFSRFEEAERMYLDM 786

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1SCU2 WDR35 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 30/80 (37%), Positives = 44/80 (55%)

Query:     3 LKNVGLNEAFQFVEAHPHPRXXXXXXXXXXXXXXXNHAEQALVNCQDYAGLQLIKSLRAL 62
             ++ VG+ +A QF+E +PHPR                 AEQA V C+DY G++ +K L  L
Sbjct:   683 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLPTAEQAFVRCKDYQGIKFVKCLGNL 742

Query:    63 PDDIMKHAYIAQHQGRFQTA 82
               + MK A +A + GRF+ A
Sbjct:   743 QSESMKQAEVAAYFGRFEEA 762

GO:0042384 "cilium assembly" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

RGD|1564116 Wdr35 "WD repeat domain 35" [Rattus norvegicus (taxid:10116)]

 Score = 144 (55.7 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 30/87 (34%), Positives = 47/87 (54%)

Query:     3 LKNVGLNEAFQFVEAHPHPRXXXXXXXXXXXXXXXNHAEQALVNCQDYAGLQLIKSLRAL 62
             ++ VG+ +A QF+E +PHPR                 A+QA V C+DY G++ +K L  L
Sbjct:   667 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKRLGNL 726

Query:    63 PDDIMKHAYIAQHQGRFQTA--VYCDI 87
               + MK A +  + GRF+ A  +Y D+
Sbjct:   727 QSESMKQAEVIAYFGRFEEAERMYLDM 753

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0005932 "microtubule basal body" evidence=ISO;ISS

GO:0030991 "intraflagellar transport particle A" evidence=ISO;ISS

GO:0035085 "cilium axoneme" evidence=ISO;ISS

GO:0042384 "cilium assembly" evidence=ISO;ISS

UNIPROTKB|Q9P2L0 WDR35 "WD repeat-containing protein 35" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 29/80 (36%), Positives = 43/80 (53%)

Query:     3 LKNVGLNEAFQFVEAHPHPRXXXXXXXXXXXXXXXNHAEQALVNCQDYAGLQLIKSLRAL 62
             ++ VG+ +A QF+E +PHPR                 AEQA V C+DY G++ +K L  L
Sbjct:   678 IEKVGIKDASQFIEDNPHPRLWRLLAEAALQKLDLYTAEQAFVRCKDYQGIKFVKRLGKL 737

Query:    63 PDDIMKHAYIAQHQGRFQTA 82
               + MK A +  + GRF+ A
Sbjct:   738 LSESMKQAEVVGYFGRFEEA 757

GO:0030991 "intraflagellar transport particle A" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0005932 "microtubule basal body" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0035085 "cilium axoneme" evidence=ISS

MGI|MGI:1921932 Wdr35 "WD repeat domain 35" [Mus musculus (taxid:10090)]

 Score = 141 (54.7 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 30/87 (34%), Positives = 47/87 (54%)

Query:     3 LKNVGLNEAFQFVEAHPHPRXXXXXXXXXXXXXXXNHAEQALVNCQDYAGLQLIKSLRAL 62
             ++ VG+ +A QF+E +PHPR                 A+QA V C+DY G++ +K L  L
Sbjct:   678 IEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKLLGNL 737

Query:    63 PDDIMKHAYIAQHQGRFQTA--VYCDI 87
               + MK A +  + GRF+ A  +Y D+
Sbjct:   738 QSESMKQAEVIAYFGRFEDAERMYQDM 764

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0035085 "cilium axoneme" evidence=IDA

GO:0042384 "cilium assembly" evidence=ISO;IMP

GO:0042995 "cell projection" evidence=IEA

FB|FBgn0035264 Oseg4 "Oseg4" [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 30/86 (34%), Positives = 44/86 (51%)

Query:     3 LKNVGLNEAFQFVEAHPHPRXXXXXXXXXXXXXXXNHAEQALVNCQDYAGLQLIKSLRAL 62
             L++VGL +A QF+E +PHPR                 AE A V C  Y G++L+K LR +
Sbjct:   691 LEHVGLEDAKQFIEDNPHPRLWRLLAESALKKLELETAENAFVRCAHYPGIKLVKRLRTI 750

Query:    63 PDDIMKHAYIAQHQGRFQTA--VYCD 86
                 ++ A I+   G F+ A  +Y D
Sbjct:   751 HSKELQRAEISAFYGEFEEAEKLYLD 776


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       99        84   0.00091  102 3  11 22  0.37    29
                                                     29  0.45    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  532 (57 KB)
  Total size of DFA:  105 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.48u 0.12s 7.60t   Elapsed:  00:00:01
  Total cpu time:  7.48u 0.12s 7.60t   Elapsed:  00:00:01
  Start:  Thu Aug 15 17:06:21 2013   End:  Thu Aug 15 17:06:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0042384 "cilium assembly" evidence=ISM;IEP

GO:0035058 "nonmotile primary cilium assembly" evidence=ISS

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
pfam04053	429	pfam04053, Coatomer_WDAD, Coatomer WD associated r	9e-04

>gnl|CDD|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region

 Score = 36.4 bits (85), Expect = 9e-04
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 8   LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM 67
           L+ A +  +       WK L D +L   ++  AE+A    +D+  L L+       + + 
Sbjct: 320 LDVALEIAKELDDEHKWKRLGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNKEKLK 379

Query: 68  KHAYIAQHQG----RFQTAVYCDIIE 89
           K A IA+ +G     FQ A+Y   +E
Sbjct: 380 KLAKIAEERGDYNSAFQNALYLGDVE 405

This region is composed of WD40 repeats. Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG2041|consensus	1189		99.91
KOG1538|consensus	1081		99.67
KOG1524|consensus	737		99.65
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.69
KOG3616|consensus	1636		98.29
KOG0292|consensus	1202		97.47
KOG3617|consensus	1416		97.4
KOG0276|consensus	794		97.23
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	91.25
TIGR02552	135	LcrH_SycD type III secretion low calcium response	91.23
PLN03077	857	Protein ECB2; Provisional	90.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	88.93
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	88.61
PRK15359	144	type III secretion system chaperone protein SscB;	88.13
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	85.94
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	85.75
PRK11788	389	tetratricopeptide repeat protein; Provisional	85.67
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	85.09
PF11349	129	DUF3151: Protein of unknown function (DUF3151); In	83.07
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	82.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	82.49
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	80.33

>KOG2041|consensus

Probab=99.91  E-value=4.5e-25  Score=189.34  Aligned_cols=88  Identities=44%  Similarity=0.781  Sum_probs=86.2

Q ss_pred             cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccc
Q psy8677           2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQT   81 (99)
Q Consensus         2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~E   81 (99)
                      ++|+++++||.+|++++|||+||++||+.||.+++|++||.|||||+||.||.||++|.++-++++++|||.+|+|+|+|
T Consensus       673 Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee  752 (1189)
T KOG2041|consen  673 LVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE  752 (1189)
T ss_pred             HHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh--hHhHHH
Q psy8677          82 AV--YCDIIE   89 (99)
Q Consensus        82 Ae--Y~~i~~   89 (99)
                      ||  |.++|+
T Consensus       753 aek~yld~dr  762 (1189)
T KOG2041|consen  753 AEKLYLDADR  762 (1189)
T ss_pred             hhhhhhccch
Confidence            99  999886

>KOG1538|consensus

Probab=99.67  E-value=4e-17  Score=140.07  Aligned_cols=82  Identities=26%  Similarity=0.352  Sum_probs=78.0

Q ss_pred             cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC-----CHHHHHHHHHHHc
Q psy8677           2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP-----DDIMKHAYIAQHQ   76 (99)
Q Consensus         2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~-----~~~~~~Aei~ay~   76 (99)
                      .||.+.++||++++|.+++.+||+.||..||++++|++|++||+|++|.+++.+|..|++.+     .+++..|+++||+
T Consensus       566 ~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~  645 (1081)
T KOG1538|consen  566 YIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQ  645 (1081)
T ss_pred             hhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhh
Confidence            48999999999999999999999999999999999999999999999999999999998764     3678999999999


Q ss_pred             CCccchh
Q psy8677          77 GRFQTAV   83 (99)
Q Consensus        77 gkf~EAe   83 (99)
                      |||.||+
T Consensus       646 gKF~EAA  652 (1081)
T KOG1538|consen  646 GKFHEAA  652 (1081)
T ss_pred             hhHHHHH
Confidence            9999999

>KOG1524|consensus

Probab=99.65  E-value=3.3e-16  Score=131.80  Aligned_cols=91  Identities=18%  Similarity=0.199  Sum_probs=86.3

Q ss_pred             cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccc
Q psy8677           2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQT   81 (99)
Q Consensus         2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~E   81 (99)
                      ++..++|++|+++||...|+++|++||..|..+.++-++|.||+++.+.++|+||++||++++++.++||+..+.|+..|
T Consensus       583 ~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~~G~~~e  662 (737)
T KOG1524|consen  583 YLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLMLGRMLE  662 (737)
T ss_pred             HhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHHhccchh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh---------hHhHHHHHh
Q psy8677          82 AV---------YCDIIEYLR   92 (99)
Q Consensus        82 Ae---------Y~~i~~~~~   92 (99)
                      ||         |+.+-.+|+
T Consensus       663 Ae~iLl~~gl~~qav~lni~  682 (737)
T KOG1524|consen  663 AETILLHGGLIEQAVGLNIR  682 (737)
T ss_pred             hhHHHHhcchHHHhhhhhhh
Confidence            99         777776665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.69  E-value=2.4e-08  Score=82.09  Aligned_cols=81  Identities=27%  Similarity=0.407  Sum_probs=66.0

Q ss_pred             ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccch
Q psy8677           3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTA   82 (99)
Q Consensus         3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EA   82 (99)
                      |+-|.++.|++.+...+.+.-|+.||..||..+|+++||+||.+++|+.++-|+-.+-.-...-...|+++.-.|++.-|
T Consensus       329 l~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~a  408 (443)
T PF04053_consen  329 LQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIA  408 (443)
T ss_dssp             HHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHH
T ss_pred             HhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHH
Confidence            67789999999999999999999999999999999999999999999999999988754434444666777767766655


Q ss_pred             h
Q psy8677          83 V   83 (99)
Q Consensus        83 e   83 (99)
                      =
T Consensus       409 f  409 (443)
T PF04053_consen  409 F  409 (443)
T ss_dssp             H
T ss_pred             H
Confidence            4

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3616|consensus

Probab=98.29  E-value=1.2e-06  Score=77.63  Aligned_cols=82  Identities=22%  Similarity=0.351  Sum_probs=72.4

Q ss_pred             cccccCHHHHHHHHHhC---C-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH-----------
Q psy8677           2 YLKNVGLNEAFQFVEAH---P-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI-----------   66 (99)
Q Consensus         2 ~le~~~~~eA~~~~~~~---~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~-----------   66 (99)
                      -|+.+.++.|..|.+.+   | ..+.|..||++||+.++|-||+.||.+++|+.++.|+..+-++-++.           
T Consensus       454 aid~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f  533 (1636)
T KOG3616|consen  454 AIDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF  533 (1636)
T ss_pred             ccccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence            37889999999998864   3 47899999999999999999999999999999999999998775422           


Q ss_pred             -HHHHHHHHHcCCccchh
Q psy8677          67 -MKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        67 -~~~Aei~ay~gkf~EAe   83 (99)
                       .-+|.++..-.+|.|||
T Consensus       534 ykvra~lail~kkfk~ae  551 (1636)
T KOG3616|consen  534 YKVRAMLAILEKKFKEAE  551 (1636)
T ss_pred             HHHHHHHHHHHhhhhHHH
Confidence             36899999999999999

>KOG0292|consensus

Probab=97.47  E-value=0.00011  Score=65.80  Aligned_cols=56  Identities=16%  Similarity=0.246  Sum_probs=53.1

Q ss_pred             cccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHH
Q psy8677           2 YLKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIK   57 (99)
Q Consensus         2 ~le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~   57 (99)
                      -||-+.++.|+..|+....+.-|..||+.||..+|-+|||.||.+.+++++|.|+-
T Consensus       653 aLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLY  708 (1202)
T KOG0292|consen  653 ALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLY  708 (1202)
T ss_pred             ehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEE
Confidence            37889999999999999999999999999999999999999999999999998863

>KOG3617|consensus

Probab=97.40  E-value=0.00047  Score=62.05  Aligned_cols=88  Identities=18%  Similarity=0.276  Sum_probs=79.3

Q ss_pred             ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC-CHHHHHHHHHHHcCCccc
Q psy8677           3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP-DDIMKHAYIAQHQGRFQT   81 (99)
Q Consensus         3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~-~~~~~~Aei~ay~gkf~E   81 (99)
                      +.-|+++.||+-++....+.-|..+|.++.....||+|..|.-..+..++..-+.+-+.-+ ..+.+-|-++.-.|-.+|
T Consensus       739 vtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEe  818 (1416)
T KOG3617|consen  739 VTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEE  818 (1416)
T ss_pred             EEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHH
Confidence            4568899999999999999999999999999999999999999999999999999887665 556788888888999999


Q ss_pred             hh--hHhHHHH
Q psy8677          82 AV--YCDIIEY   90 (99)
Q Consensus        82 Ae--Y~~i~~~   90 (99)
                      |+  |++.+|+
T Consensus       819 A~~lYr~ckR~  829 (1416)
T KOG3617|consen  819 ALILYRQCKRY  829 (1416)
T ss_pred             HHHHHHHHHHH
Confidence            99  9988775

>KOG0276|consensus

Probab=97.23  E-value=0.0011  Score=57.64  Aligned_cols=57  Identities=25%  Similarity=0.328  Sum_probs=53.4

Q ss_pred             ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHh
Q psy8677           3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSL   59 (99)
Q Consensus         3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l   59 (99)
                      |.-+.++.|++++.....+.-|+.||..||.+.+|..|+.||.+-+|+.++-++...
T Consensus       648 l~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~  704 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTS  704 (794)
T ss_pred             hhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhh
Confidence            567889999999999999999999999999999999999999999999999887654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=91.25  E-value=1.5  Score=37.21  Aligned_cols=77  Identities=14%  Similarity=0.144  Sum_probs=58.1

Q ss_pred             cccCHHHHHHHHHhC---CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCcc
Q psy8677           4 KNVGLNEAFQFVEAH---PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQ   80 (99)
Q Consensus         4 e~~~~~eA~~~~~~~---~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~   80 (99)
                      ..|.++||+++++..   |+...|..|....-..++++.|++++-++.+..-        +-...-.....+++-.|+++
T Consensus       474 r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p--------~~~~~y~~L~~~y~~~G~~~  545 (697)
T PLN03081        474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP--------EKLNNYVVLLNLYNSSGRQA  545 (697)
T ss_pred             hcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC--------CCCcchHHHHHHHHhCCCHH
Confidence            468899999999875   4677899999999999999999998776533210        00112346778899999999


Q ss_pred             chh--hHhHH
Q psy8677          81 TAV--YCDII   88 (99)
Q Consensus        81 EAe--Y~~i~   88 (99)
                      ||+  +..|.
T Consensus       546 ~A~~v~~~m~  555 (697)
T PLN03081        546 EAAKVVETLK  555 (697)
T ss_pred             HHHHHHHHHH
Confidence            999  55544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=91.23  E-value=1.5  Score=28.62  Aligned_cols=73  Identities=19%  Similarity=0.191  Sum_probs=52.8

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+++++|.+..+    .+| ++..|..+|.......+++-|...|-++-+..        .+-+..-...|.++...|
T Consensus        28 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g   99 (135)
T TIGR02552        28 YQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLLALG   99 (135)
T ss_pred             HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcC
Confidence            45677788876653    355 57889999999999999999998887664432        111223356899999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|.
T Consensus       100 ~~~~A~  105 (135)
T TIGR02552       100 EPESAL  105 (135)
T ss_pred             CHHHHH
Confidence            999997

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03077 Protein ECB2; Provisional

Probab=90.46  E-value=1.7  Score=37.71  Aligned_cols=72  Identities=17%  Similarity=0.258  Sum_probs=56.3

Q ss_pred             ccccCHHHHHHHHHh---CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhC-CCCHHHHHHHHHHHcCC
Q psy8677           3 LKNVGLNEAFQFVEA---HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRA-LPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         3 le~~~~~eA~~~~~~---~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~-l~~~~~~~Aei~ay~gk   78 (99)
                      -..|.++||+++++.   .|++..|..|-...-...+.+.++.+.-++-+         ++- -...-...+-+++-.|+
T Consensus       636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~---------l~p~~~~~y~ll~n~ya~~g~  706 (857)
T PLN03077        636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE---------LDPNSVGYYILLCNLYADAGK  706 (857)
T ss_pred             HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---------hCCCCcchHHHHHHHHHHCCC
Confidence            356889999999987   46788999999988889999999988655532         221 12234677889999999


Q ss_pred             ccchh
Q psy8677          79 FQTAV   83 (99)
Q Consensus        79 f~EAe   83 (99)
                      ++||+
T Consensus       707 ~~~a~  711 (857)
T PLN03077        707 WDEVA  711 (857)
T ss_pred             hHHHH
Confidence            99999

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=88.93  E-value=3.7  Score=27.67  Aligned_cols=44  Identities=20%  Similarity=0.135  Sum_probs=31.1

Q ss_pred             cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677           4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus         4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      ..+.+++|...+.    ..| ++..|..+|......++++-|...|.+.
T Consensus        43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   91 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRA   91 (234)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4567777776654    333 3667788888888888888888877655

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=88.61  E-value=2.8  Score=23.26  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=50.5

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ...+.+++|+.+...    .| ++..|..+|.......+++-|...|-++-+...        ..+.--...|.++.-.|
T Consensus        11 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~   82 (100)
T cd00189          11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP--------DNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------cchhHHHHHHHHHHHHH
Confidence            356788888877654    33 346788889888888999988888776533211        11123356788888889


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|.
T Consensus        83 ~~~~a~   88 (100)
T cd00189          83 KYEEAL   88 (100)
T ss_pred             hHHHHH
Confidence            988887

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=88.13  E-value=3.5  Score=28.32  Aligned_cols=72  Identities=15%  Similarity=0.050  Sum_probs=44.6

Q ss_pred             cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677           4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk   78 (99)
                      ..+.+++|..++.    ..| +...|..+|......++++-|..+|-+.-...-        +-+..-...|.++...|+
T Consensus        36 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--------~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         36 QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--------SHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHcCC
Confidence            4566666655543    233 466677777777777777777776665432210        011233578888888999


Q ss_pred             ccchh
Q psy8677          79 FQTAV   83 (99)
Q Consensus        79 f~EAe   83 (99)
                      ++||.
T Consensus       108 ~~eAi  112 (144)
T PRK15359        108 PGLAR  112 (144)
T ss_pred             HHHHH
Confidence            99988

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=85.94  E-value=2.5  Score=24.51  Aligned_cols=48  Identities=29%  Similarity=0.347  Sum_probs=38.0

Q ss_pred             cccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677           2 YLKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQD   49 (99)
Q Consensus         2 ~le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d   49 (99)
                      +++.+.+++|+++.+    ..| ++..|-.||..-+..++++-|+..+-++-.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            467889999998754    456 578888899999999999999988877643

...

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=85.75  E-value=4.8  Score=27.13  Aligned_cols=17  Identities=18%  Similarity=0.303  Sum_probs=12.6

Q ss_pred             HHHHHHHHHcCCccchh
Q psy8677          67 MKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        67 ~~~Aei~ay~gkf~EAe   83 (99)
                      ...|.++.-.|++++|.
T Consensus       173 ~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       173 LELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHHHHHHHHcCCHHHHH
Confidence            35677777778888877

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=85.67  E-value=3.1  Score=31.79  Aligned_cols=44  Identities=18%  Similarity=0.201  Sum_probs=24.3

Q ss_pred             cccCHHHHHHHHHh----CCCh------HHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677           4 KNVGLNEAFQFVEA----HPHP------RLWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus         4 e~~~~~eA~~~~~~----~~h~------~lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      ..+.+++|....+.    +|.+      ..|..+|...+...+++-|...|-++
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  206 (389)
T PRK11788        153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA  206 (389)
T ss_pred             HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            34566666555433    2211      13445666666677777777666654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=85.09  E-value=3.6  Score=37.40  Aligned_cols=46  Identities=20%  Similarity=0.055  Sum_probs=39.1

Q ss_pred             ccccCHHHHHHHHHhCCC-hHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEAHPH-PRLWKLLADKSLDLLSLNHAEQALVNCQ   48 (99)
Q Consensus         3 le~~~~~eA~~~~~~~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~   48 (99)
                      .+.+.+++|..+++.+|. +..+-.||...+...+++-|..+|-++-
T Consensus       584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al  630 (1157)
T PRK11447        584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVL  630 (1157)
T ss_pred             HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456789999999998874 6788999999999999999999887664

>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein

Probab=83.07  E-value=2.8  Score=29.93  Aligned_cols=47  Identities=21%  Similarity=0.268  Sum_probs=39.1

Q ss_pred             HHHHHhCCC-hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHh
Q psy8677          12 FQFVEAHPH-PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSL   59 (99)
Q Consensus        12 ~~~~~~~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l   59 (99)
                      -.++..+|. +.-|..||+.||...+ .|+-.||+|.+=-++|+-+.+-
T Consensus        26 ~~vaa~~P~ss~aWA~LAe~al~~g~-~v~AYAyARTGYHRGLD~LRr~   73 (129)
T PF11349_consen   26 AEVAAAHPASSLAWAALAEEALAAGR-PVTAYAYARTGYHRGLDQLRRN   73 (129)
T ss_pred             HHHHHHCCCchHHHHHHHHHHHhCCC-chhhhhhhhccccccHHHHHHC
Confidence            467778886 6679999999999985 5666899999999999877764

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=82.50  E-value=8.3  Score=26.13  Aligned_cols=36  Identities=17%  Similarity=0.119  Sum_probs=22.9

Q ss_pred             HHHhCCCh----HHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677          14 FVEAHPHP----RLWKLLADKSLDLLSLNHAEQALVNCQD   49 (99)
Q Consensus        14 ~~~~~~h~----~lW~~LA~~AL~~~~l~iAe~AFvr~~d   49 (99)
                      ++..+|..    .-+-.||...+..++++-|...|-.+-+
T Consensus        37 l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~   76 (145)
T PF09976_consen   37 LAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA   76 (145)
T ss_pred             HHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            56666643    3344566777777777777777766543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=82.49  E-value=9.7  Score=30.38  Aligned_cols=72  Identities=17%  Similarity=0.117  Sum_probs=54.6

Q ss_pred             ccCHHHHHHHH----HhCCC-hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH--HHHHHHHHHcC
Q psy8677           5 NVGLNEAFQFV----EAHPH-PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI--MKHAYIAQHQG   77 (99)
Q Consensus         5 ~~~~~eA~~~~----~~~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~--~~~Aei~ay~g   77 (99)
                      .+..++++.++    +.+|+ +.+.-++|..++...+++-|+..|-+.-.           .-|+..  ...|.++.-.|
T Consensus       307 ~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-----------~~P~~~~~~~La~~~~~~g  375 (398)
T PRK10747        307 TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-----------QRPDAYDYAWLADALDRLH  375 (398)
T ss_pred             CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------cCCCHHHHHHHHHHHHHcC
Confidence            35666666666    56775 55688999999999999999999865432           235433  58999999999


Q ss_pred             Cccchh--hHhH
Q psy8677          78 RFQTAV--YCDI   87 (99)
Q Consensus        78 kf~EAe--Y~~i   87 (99)
                      +.++|.  |++-
T Consensus       376 ~~~~A~~~~~~~  387 (398)
T PRK10747        376 KPEEAAAMRRDG  387 (398)
T ss_pred             CHHHHHHHHHHH
Confidence            999999  7654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=80.33  E-value=14  Score=30.31  Aligned_cols=44  Identities=20%  Similarity=0.315  Sum_probs=32.2

Q ss_pred             cccCHHHHHHHHHh-----CCChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677           4 KNVGLNEAFQFVEA-----HPHPRLWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus         4 e~~~~~eA~~~~~~-----~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      ..+.+++|+.+.+.     ..++..|..||..-...++++-|...|-++
T Consensus       579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  627 (899)
T TIGR02917       579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL  627 (899)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45667777776653     235778888888888888888888877654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-06
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	2e-04

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 42.0 bits (99), Expect = 5e-06
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 8   LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM 67
           L  A   +        W+ L D SL   +   A +A  N  D   L L+ S     + ++
Sbjct: 668 LTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLV 727

Query: 68  KHAYIAQHQG----RFQTAVYCDIIE 89
             A  A+  G     F        I+
Sbjct: 728 TLAKDAETTGKFNLAFNAYWIAGDIQ 753

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 177

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 8   LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIM 67
           L+ A    +       W+ L  ++L   + + AE        +  L  +  +    + + 
Sbjct: 21  LDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLS 80

Query: 68  KHAYIAQHQG----RFQTAVYCDIIE 89
           K   IAQ +           Y +  +
Sbjct: 81  KMQNIAQTREDFGSMLLNTFYNNSTK 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.28
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	99.19
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.55
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.3
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	95.09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	94.31
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	94.11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	93.79
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	93.75
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	93.5
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	93.26
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	93.16
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	93.06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	93.01
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	92.84
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	92.58
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	92.49
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	92.38
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	92.11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	91.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	91.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	91.46
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	91.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	91.25
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	91.21
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	91.19
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	91.18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	91.01
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	90.88
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	90.85
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	90.84
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	90.48
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	90.37
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	90.22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	90.19
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	90.18
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	90.16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	90.15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	90.0
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	89.99
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	89.88
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	89.64
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	89.59
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	89.57
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	89.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	89.09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	89.04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	89.02
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	88.99
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	88.96
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	88.92
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	88.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	88.78
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	88.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	88.44
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	88.37
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	88.35
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	87.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	87.56
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	87.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	87.43
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	87.35
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	87.24
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	87.12
3u4t_A	272	TPR repeat-containing protein; structural genomics	86.67
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	86.34
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	86.29
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	86.07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	85.12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	85.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	84.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	84.88
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	84.29
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	84.24
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	83.69
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	83.68
2kat_A	115	Uncharacterized protein; NESG, structure, structur	83.67
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	82.95
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	82.91
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	82.22
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	81.94
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	81.6
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	81.42
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	81.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	81.27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	81.26
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	81.25
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	80.91
2l6j_A	111	TPR repeat-containing protein associated with HSP;	80.79
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	80.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	80.58
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	80.23
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	80.19

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.28  E-value=9.3e-12  Score=99.38  Aligned_cols=81  Identities=26%  Similarity=0.318  Sum_probs=64.8

Q ss_pred             ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccch
Q psy8677           3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTA   82 (99)
Q Consensus         3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EA   82 (99)
                      |+-+.|++|+++++...++..|+.||..||..+++++|++||.+++|++++.+|..+....+.....|+++...|+++.|
T Consensus       663 l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A  742 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLA  742 (814)
T ss_dssp             HHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHH
Confidence            56789999999999999999999999999999999999999999999999999988754444333444444444444433


Q ss_pred             h
Q psy8677          83 V   83 (99)
Q Consensus        83 e   83 (99)
                      +
T Consensus       743 ~  743 (814)
T 3mkq_A          743 F  743 (814)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=99.19  E-value=6.6e-11  Score=86.25  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=61.4

Q ss_pred             ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677           3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk   78 (99)
                      |+-|.++.|+++|+...++..|+.||..||..+|+++|+.||.+++|+.++.|+..+-.-.+.-..+|+++.-.|+
T Consensus        16 L~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~   91 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTRED   91 (177)
T ss_dssp             HHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred             HhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCcc
Confidence            6789999999999999999999999999999999999999999999999999996664333322334444433333

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.55  E-value=8.4e-09  Score=83.94  Aligned_cols=75  Identities=21%  Similarity=0.449  Sum_probs=0.0

Q ss_pred             cccccC-HHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCcc
Q psy8677           2 YLKNVG-LNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQ   80 (99)
Q Consensus         2 ~le~~~-~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~   80 (99)
                      +|++.+ +++|++|+...+||..|..||...+..+++.-|..||+++.|+.+++.|.+          .|   .-+|+|+
T Consensus        12 ll~~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~----------~a---e~~g~~E   78 (449)
T 1b89_A           12 LIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQ----------AA---NTSGNWE   78 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHH----------HH---HhCCCHH
Confidence            566666 999999999999999999999999999999999999999999999888865          22   2389999


Q ss_pred             chh-hHhHHH
Q psy8677          81 TAV-YCDIIE   89 (99)
Q Consensus        81 EAe-Y~~i~~   89 (99)
                      ||. |.++++
T Consensus        79 eAi~yl~~ar   88 (449)
T 1b89_A           79 ELVKYLQMAR   88 (449)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            999 777665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.30  E-value=0.083  Score=33.57  Aligned_cols=76  Identities=13%  Similarity=0.026  Sum_probs=57.6

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|..+..    ..| ++..|..||..-...++++-|..+|-+.-...        -+-+..-...|.++...|
T Consensus        29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g  100 (142)
T 2xcb_A           29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--------INEPRFPFHAAECHLQLG  100 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTT
T ss_pred             HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHcC
Confidence            46788999987665    455 68899999999999999999999998753221        111223357899999999


Q ss_pred             Cccchh--hHh
Q psy8677          78 RFQTAV--YCD   86 (99)
Q Consensus        78 kf~EAe--Y~~   86 (99)
                      ++++|.  |.+
T Consensus       101 ~~~~A~~~~~~  111 (142)
T 2xcb_A          101 DLDGAESGFYS  111 (142)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            999998  544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.24  E-value=0.082  Score=34.47  Aligned_cols=76  Identities=11%  Similarity=-0.005  Sum_probs=57.4

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|.....    ..| ++..|..||......++++-|..+|-+.-...        -+-+..-...|.++...|
T Consensus        32 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~lg~~~~~~g  103 (148)
T 2vgx_A           32 YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--------IXEPRFPFHAAECLLQXG  103 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTT
T ss_pred             HHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCchHHHHHHHHHHHcC
Confidence            46788999987654    455 68899999999999999999999998753221        111223357899999999


Q ss_pred             Cccchh--hHh
Q psy8677          78 RFQTAV--YCD   86 (99)
Q Consensus        78 kf~EAe--Y~~   86 (99)
                      ++++|.  |.+
T Consensus       104 ~~~~A~~~~~~  114 (148)
T 2vgx_A          104 ELAEAESGLFL  114 (148)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            999999  544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=95.09  E-value=0.37  Score=31.03  Aligned_cols=84  Identities=14%  Similarity=0.127  Sum_probs=59.0

Q ss_pred             cccccCHHHHHH---HHHhCC--ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCH------HHHHH
Q psy8677           2 YLKNVGLNEAFQ---FVEAHP--HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDD------IMKHA   70 (99)
Q Consensus         2 ~le~~~~~eA~~---~~~~~~--h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~------~~~~A   70 (99)
                      .+..+.+++|.+   .+...|  ....|..+|......++++-|...|.+.-+        ..+...++      -...|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~l~   73 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ--------QAQKSGDHTAEHRALHQVG   73 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHTTCCHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--------HHHHcCCcHHHHHHHHHHH
Confidence            467899999999   877766  467899999999999999999988876532        22233221      23688


Q ss_pred             HHHHHcCCccchh--hHhHHHHHhh
Q psy8677          71 YIAQHQGRFQTAV--YCDIIEYLRR   93 (99)
Q Consensus        71 ei~ay~gkf~EAe--Y~~i~~~~~~   93 (99)
                      .++...|++++|.  |.+.-...++
T Consensus        74 ~~~~~~g~~~~A~~~~~~al~~~~~   98 (203)
T 3gw4_A           74 MVERMAGNWDAARRCFLEERELLAS   98 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999  6665555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=94.31  E-value=0.35  Score=32.25  Aligned_cols=77  Identities=9%  Similarity=-0.104  Sum_probs=58.4

Q ss_pred             ccccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ...+.+++|..+.    ...| ++.-|..||..-...++++-|..+|-+.-..+        -+-+..-...|.++.-.|
T Consensus        47 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--------P~~~~~~~~lg~~~~~lg  118 (151)
T 3gyz_A           47 YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--------KNDYTPVFHTGQCQLRLK  118 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SSCCHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcC
Confidence            4578888888765    4455 58999999999999999999999997762221        112233457899999999


Q ss_pred             Cccchh--hHhH
Q psy8677          78 RFQTAV--YCDI   87 (99)
Q Consensus        78 kf~EAe--Y~~i   87 (99)
                      ++++|.  |.+.
T Consensus       119 ~~~eA~~~~~~a  130 (151)
T 3gyz_A          119 APLKAKECFELV  130 (151)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999  6554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=94.11  E-value=0.32  Score=29.25  Aligned_cols=73  Identities=16%  Similarity=0.122  Sum_probs=53.3

Q ss_pred             ccccCHHHHHHHHH----hCCC-h---HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC---CCHHHHHHH
Q psy8677           3 LKNVGLNEAFQFVE----AHPH-P---RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL---PDDIMKHAY   71 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~h-~---~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l---~~~~~~~Ae   71 (99)
                      +..+.+++|.....    ..|+ +   ..|-.+|......++++-|...|-++-+..        .+-   +.--...|.
T Consensus        13 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~~~la~   84 (129)
T 2xev_A           13 LKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--------PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTSTTHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--------CCCcccHHHHHHHHH
Confidence            46788899987655    3554 3   589999999999999999998887652211        111   112357899


Q ss_pred             HHHHcCCccchh
Q psy8677          72 IAQHQGRFQTAV   83 (99)
Q Consensus        72 i~ay~gkf~EAe   83 (99)
                      ++...|++++|.
T Consensus        85 ~~~~~g~~~~A~   96 (129)
T 2xev_A           85 SQYGEGKNTEAQ   96 (129)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            999999999998

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=93.79  E-value=0.8  Score=29.39  Aligned_cols=80  Identities=15%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhCC-Ch----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH------HHHHHHHHHc
Q psy8677           8 LNEAFQFVEAHP-HP----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI------MKHAYIAQHQ   76 (99)
Q Consensus         8 ~~eA~~~~~~~~-h~----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~------~~~Aei~ay~   76 (99)
                      +++|+++++..+ .+    ..+..||......++++-|...|-+.-+     +   .+..+++.      ...|.++...
T Consensus        89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~---~~~~~~~~~~~~~~~~la~~~~~~  160 (203)
T 3gw4_A           89 FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV-----Y---AQQADDQVAIACAFRGLGDLAQQE  160 (203)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----H---HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----H---HHhccchHHHHHHHHHHHHHHHHC
Confidence            345555555555 33    3477889999999999999988877522     1   22333322      4789999999


Q ss_pred             CCccchh--hHhHHHHHhhhc
Q psy8677          77 GRFQTAV--YCDIIEYLRRRK   95 (99)
Q Consensus        77 gkf~EAe--Y~~i~~~~~~~~   95 (99)
                      |++++|.  |.+.-...++..
T Consensus       161 g~~~~A~~~~~~al~~~~~~~  181 (203)
T 3gw4_A          161 KNLLEAQQHWLRARDIFAELE  181 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHcC
Confidence            9999999  666655555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=93.75  E-value=0.25  Score=30.15  Aligned_cols=77  Identities=12%  Similarity=0.073  Sum_probs=56.7

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|+.+..    ..| ++..|..+|..-+..++++-|...|-++-..+-        +-+..-...|.++...|
T Consensus        15 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~   86 (126)
T 3upv_A           15 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--------NFVRAYIRKATAQIAVK   86 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHHh
Confidence            45788888887654    355 578999999999999999999988877532210        11123357899999999


Q ss_pred             Cccchh--hHhH
Q psy8677          78 RFQTAV--YCDI   87 (99)
Q Consensus        78 kf~EAe--Y~~i   87 (99)
                      ++++|.  |.+.
T Consensus        87 ~~~~A~~~~~~a   98 (126)
T 3upv_A           87 EYASALETLDAA   98 (126)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999  5443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=93.50  E-value=0.23  Score=28.74  Aligned_cols=73  Identities=15%  Similarity=0.113  Sum_probs=53.4

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|+.+...    .| ++..|..+|.......+++-|...|-++-+...        +-+.--...|.++...|
T Consensus        15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~   86 (118)
T 1elw_A           15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--------DWGKGYSRKAAALEFLN   86 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHHh
Confidence            456788888876553    44 688899999999999999999888776532210        11112246889999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|.
T Consensus        87 ~~~~A~   92 (118)
T 1elw_A           87 RFEEAK   92 (118)
T ss_dssp             CHHHHH
T ss_pred             hHHHHH
Confidence            999998

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=93.26  E-value=0.69  Score=27.02  Aligned_cols=73  Identities=15%  Similarity=0.054  Sum_probs=52.9

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ...+.+++|+.+..    ..| ++..|..+|.......+++-|...|-++-...        .+-+..-...|.++...|
T Consensus        23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~   94 (131)
T 2vyi_A           23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--------PAYSKAYGRMGLALSSLN   94 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred             HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--------ccCHHHHHHHHHHHHHhC
Confidence            35677888887654    344 57889999999999999999988887653221        011112357899999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|.
T Consensus        95 ~~~~A~  100 (131)
T 2vyi_A           95 KHVEAV  100 (131)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            999998

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=93.16  E-value=0.3  Score=32.03  Aligned_cols=77  Identities=14%  Similarity=0.184  Sum_probs=58.4

Q ss_pred             ccccCHHHHHHHHHhC--CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCcc
Q psy8677           3 LKNVGLNEAFQFVEAH--PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQ   80 (99)
Q Consensus         3 le~~~~~eA~~~~~~~--~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~   80 (99)
                      ...+.+++|+......  +++..|..+|......++++-|...|-+.-...        .+.+.--...|.++...|+++
T Consensus        17 ~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A           17 ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcccHH
Confidence            4578899999988764  467899999999999999999999887653221        111122347899999999999


Q ss_pred             chh--hHhH
Q psy8677          81 TAV--YCDI   87 (99)
Q Consensus        81 EAe--Y~~i   87 (99)
                      +|.  |.+.
T Consensus        89 ~A~~~~~~a   97 (213)
T 1hh8_A           89 LAIKDLKEA   97 (213)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998  5544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=93.06  E-value=0.51  Score=27.00  Aligned_cols=75  Identities=13%  Similarity=0.098  Sum_probs=52.8

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHc-
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ-   76 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~-   76 (99)
                      ...+.+++|..+..    ..| ++..|..+|..-...++++-|...|-++-....-      ..-..--...|.++... 
T Consensus        17 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~l~~~~~~~~   90 (112)
T 2kck_A           17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED------EYNKDVWAAKADALRYIE   90 (112)
T ss_dssp             HSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC------TTCHHHHHHHHHHHTTCS
T ss_pred             HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------cchHHHHHHHHHHHHHHh
Confidence            35678888887654    344 5788999999999999999999888765332110      00111224688999999 


Q ss_pred             CCccchh
Q psy8677          77 GRFQTAV   83 (99)
Q Consensus        77 gkf~EAe   83 (99)
                      |++++|.
T Consensus        91 ~~~~~A~   97 (112)
T 2kck_A           91 GKEVEAE   97 (112)
T ss_dssp             SCSHHHH
T ss_pred             CCHHHHH
Confidence            9999998

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=93.01  E-value=0.4  Score=29.14  Aligned_cols=77  Identities=9%  Similarity=-0.045  Sum_probs=54.7

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|+.+..    ..| ++..|..+|...+...+++-|...|-++-...        .+-+..-...|.++...|
T Consensus        20 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~   91 (137)
T 3q49_B           20 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAHFFLGQCQLEME   91 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred             HHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHHHh
Confidence            35677888876544    345 47889999999999999999988886653321        111122357899999999


Q ss_pred             Cccchh--hHhH
Q psy8677          78 RFQTAV--YCDI   87 (99)
Q Consensus        78 kf~EAe--Y~~i   87 (99)
                      ++++|.  |.+.
T Consensus        92 ~~~~A~~~~~~a  103 (137)
T 3q49_B           92 SYDEAIANLQRA  103 (137)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            999998  5443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=92.84  E-value=0.37  Score=30.20  Aligned_cols=76  Identities=18%  Similarity=0.050  Sum_probs=55.7

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|+...+    ..| ++..|..||......++++-|..+|-+.-..+-        +-+.--...|.++...|
T Consensus        28 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------KDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcC
Confidence            56788888887654    445 688999999999999999999998876522210        00112246899999999


Q ss_pred             Cccchh--hHh
Q psy8677          78 RFQTAV--YCD   86 (99)
Q Consensus        78 kf~EAe--Y~~   86 (99)
                      ++++|.  |.+
T Consensus       100 ~~~~A~~~~~~  110 (121)
T 1hxi_A          100 NANAALASLRA  110 (121)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            999998  544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=92.58  E-value=0.42  Score=30.62  Aligned_cols=73  Identities=8%  Similarity=-0.011  Sum_probs=54.0

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|+.+..    ..| ++..|..+|..-+...+++-|...|-+.-..+-        +-..--...|.++...|
T Consensus        22 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g   93 (164)
T 3sz7_A           22 MARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--------KYSKAWSRLGLARFDMA   93 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcc
Confidence            45678888877654    344 688999999999999999999988876532211        11112357899999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|.
T Consensus        94 ~~~~A~   99 (164)
T 3sz7_A           94 DYKGAK   99 (164)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            999998

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=92.49  E-value=0.79  Score=26.52  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=52.7

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ...+.+++|..+...    .| ++..|..+|.......+++-|...|-++-+..        ..-+..-...|.++...|
T Consensus        20 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~   91 (125)
T 1na0_A           20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQG   91 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhc
Confidence            346778888776543    33 57788999999999999999988887653211        000112246788999999


Q ss_pred             Cccchh--hHhH
Q psy8677          78 RFQTAV--YCDI   87 (99)
Q Consensus        78 kf~EAe--Y~~i   87 (99)
                      ++++|.  |.+.
T Consensus        92 ~~~~A~~~~~~~  103 (125)
T 1na0_A           92 DYDEAIEYYQKA  103 (125)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999998  5443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=92.38  E-value=0.79  Score=30.13  Aligned_cols=42  Identities=19%  Similarity=0.078  Sum_probs=22.9

Q ss_pred             ccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHH
Q psy8677           5 NVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVN   46 (99)
Q Consensus         5 ~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr   46 (99)
                      .+.+++|..+...    .| ++..|..+|...+..++++-|...|-+
T Consensus       104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  150 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR  150 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4555555554432    22 455566666666666666666555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=92.11  E-value=1  Score=28.29  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=54.9

Q ss_pred             ccccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ..++.+++|+...    ...| ++..|..+|..-+..++++-|...|-++-.++.        +-+..-...|.++.-.|
T Consensus        24 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~~   95 (126)
T 4gco_A           24 FKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------KFIKGYIRKAACLVAMR   95 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHCC
Confidence            4578888888654    3455 588999999999999999999888876522110        01112357899999999


Q ss_pred             Cccchh--hHh
Q psy8677          78 RFQTAV--YCD   86 (99)
Q Consensus        78 kf~EAe--Y~~   86 (99)
                      ++++|.  |.+
T Consensus        96 ~~~~A~~~~~~  106 (126)
T 4gco_A           96 EWSKAQRAYED  106 (126)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            999999  554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=91.82  E-value=0.43  Score=34.47  Aligned_cols=46  Identities=15%  Similarity=0.115  Sum_probs=36.8

Q ss_pred             ccccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQ   48 (99)
Q Consensus         3 le~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~   48 (99)
                      +..|.+++|++......++..|..+|..-+..++++-|.+.|-+.-
T Consensus       112 ~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A          112 FYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4567888888888886778888888888888888888888877663

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.70  E-value=0.44  Score=44.26  Aligned_cols=49  Identities=22%  Similarity=0.391  Sum_probs=45.1

Q ss_pred             cccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc
Q psy8677           4 KNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG   52 (99)
Q Consensus         4 e~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~   52 (99)
                      .-+.|++|++++..-..|..|..||..=+..++++-|-.||.+.+|.+.
T Consensus      1088 ~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~sa 1136 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSS 1136 (1630)
T ss_pred             HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHH
Confidence            4578999999999989999999999999999999999999999987665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=91.50  E-value=0.48  Score=28.13  Aligned_cols=73  Identities=14%  Similarity=0.196  Sum_probs=51.8

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ...+.+++|+.+...    .| ++..|..+|..-....+++-|...|-+.-....        +-+.--...|.++...|
T Consensus        27 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~~   98 (133)
T 2lni_A           27 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--------TFIKGYTRKAAALEAMK   98 (133)
T ss_dssp             HHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHHh
Confidence            356778888876653    33 578899999988889999988888765533210        11112357899999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|.
T Consensus        99 ~~~~A~  104 (133)
T 2lni_A           99 DYTKAM  104 (133)
T ss_dssp             CHHHHH
T ss_pred             hHHHHH
Confidence            999998

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.46  E-value=1.4  Score=26.54  Aligned_cols=73  Identities=16%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             ccccCHHHHHHHHH----hCCC----hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHH
Q psy8677           3 LKNVGLNEAFQFVE----AHPH----PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQ   74 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~h----~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~a   74 (99)
                      +..+.+++|+.+..    ..|.    ...|..+|.......+++-|...|.+.-...        .+-+.--...|.++.
T Consensus        39 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~  110 (148)
T 2dba_A           39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--------GGDVKALYRRSQALE  110 (148)
T ss_dssp             HTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------SCCHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------ccCHHHHHHHHHHHH
Confidence            45678888887765    3565    6789999999999999999988887643221        011112247899999


Q ss_pred             HcCCccchh
Q psy8677          75 HQGRFQTAV   83 (99)
Q Consensus        75 y~gkf~EAe   83 (99)
                      ..|++++|.
T Consensus       111 ~~~~~~~A~  119 (148)
T 2dba_A          111 KLGRLDQAV  119 (148)
T ss_dssp             HHTCHHHHH
T ss_pred             HcCCHHHHH
Confidence            999999998

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=91.34  E-value=1.7  Score=29.05  Aligned_cols=72  Identities=13%  Similarity=-0.004  Sum_probs=43.7

Q ss_pred             cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677           4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk   78 (99)
                      ..+.+++|..+...    .| ++..|..||......++++-|...|-+.-...        .+.+.--...|.++...|+
T Consensus        55 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~  126 (275)
T 1xnf_A           55 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNRGIALYYGGR  126 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------ccccHHHHHHHHHHHHhcc
Confidence            45666666665443    33 46777777777777777777777766542211        0111222456777777788


Q ss_pred             ccchh
Q psy8677          79 FQTAV   83 (99)
Q Consensus        79 f~EAe   83 (99)
                      +++|.
T Consensus       127 ~~~A~  131 (275)
T 1xnf_A          127 DKLAQ  131 (275)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87777

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=91.25  E-value=1  Score=27.81  Aligned_cols=16  Identities=25%  Similarity=0.414  Sum_probs=11.0

Q ss_pred             HHHHHHHHcCCccchh
Q psy8677          68 KHAYIAQHQGRFQTAV   83 (99)
Q Consensus        68 ~~Aei~ay~gkf~EAe   83 (99)
                      ..|.++...|++++|.
T Consensus       149 ~la~~~~~~~~~~~A~  164 (186)
T 3as5_A          149 AIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHH
Confidence            5666667777777776

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=91.21  E-value=0.75  Score=29.66  Aligned_cols=16  Identities=19%  Similarity=0.094  Sum_probs=10.6

Q ss_pred             HHHHHHHHcCCccchh
Q psy8677          68 KHAYIAQHQGRFQTAV   83 (99)
Q Consensus        68 ~~Aei~ay~gkf~EAe   83 (99)
                      ..|.++...|++++|.
T Consensus       152 ~la~~~~~~~~~~~A~  167 (225)
T 2vq2_A          152 ELARTKMLAGQLGDAD  167 (225)
T ss_dssp             HHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHH
Confidence            4566666667777666

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=91.19  E-value=0.82  Score=28.25  Aligned_cols=72  Identities=14%  Similarity=0.122  Sum_probs=45.4

Q ss_pred             cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677           4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk   78 (99)
                      ..+.+++|+.+..    ..| ++..|..+|......++++-|...|-+.-....        +.+.--...|.++...|+
T Consensus        25 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~~a~~~~~~~~   96 (166)
T 1a17_A           25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGYYRRAASNMALGK   96 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTC
T ss_pred             HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHhcc
Confidence            4567777776554    334 577788888888888888888877765432210        001122356667777777


Q ss_pred             ccchh
Q psy8677          79 FQTAV   83 (99)
Q Consensus        79 f~EAe   83 (99)
                      +++|.
T Consensus        97 ~~~A~  101 (166)
T 1a17_A           97 FRAAL  101 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77776

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=91.18  E-value=1.6  Score=28.36  Aligned_cols=84  Identities=18%  Similarity=0.104  Sum_probs=58.7

Q ss_pred             ccccCHHHHHHHHHhCC-----ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc----------h------------HH
Q psy8677           3 LKNVGLNEAFQFVEAHP-----HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG----------L------------QL   55 (99)
Q Consensus         3 le~~~~~eA~~~~~~~~-----h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~----------v------------~~   55 (99)
                      +..+.+++|....+...     ++..|..||...+..++++-|..+|-++-...-          +            ..
T Consensus        17 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~   96 (176)
T 2r5s_A           17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKR   96 (176)
T ss_dssp             HHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHH
Confidence            56788999999886532     577899999999999999999999877644321          1            11


Q ss_pred             HHHhhCC-CC-HH--HHHHHHHHHcCCccchh--hHh
Q psy8677          56 IKSLRAL-PD-DI--MKHAYIAQHQGRFQTAV--YCD   86 (99)
Q Consensus        56 I~~l~~l-~~-~~--~~~Aei~ay~gkf~EAe--Y~~   86 (99)
                      +++.-++ |+ ..  ...|.++...|++++|.  |.+
T Consensus        97 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  133 (176)
T 2r5s_A           97 LEQELAANPDNFELACELAVQYNQVGRDEEALELLWN  133 (176)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            1111111 21 22  46889999999999998  554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=91.01  E-value=0.45  Score=34.95  Aligned_cols=77  Identities=13%  Similarity=0.258  Sum_probs=58.0

Q ss_pred             ccccCHHHHHHHH----HhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677           3 LKNVGLNEAFQFV----EAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         3 le~~~~~eA~~~~----~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk   78 (99)
                      +..+.+++|+...    ..+|++..|..+|..-+..++++-|...|-++-...-        +-..--...|.++.-.|+
T Consensus        17 ~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~   88 (514)
T 2gw1_A           17 FRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--------DYSKVLLRRASANEGLGK   88 (514)
T ss_dssp             HHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHHTTC
T ss_pred             HHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--------HHHHHHHHHHHHHHHHhh
Confidence            4568888887754    4568899999999999999999999999876532110        011123578999999999


Q ss_pred             ccchh--hHhH
Q psy8677          79 FQTAV--YCDI   87 (99)
Q Consensus        79 f~EAe--Y~~i   87 (99)
                      +++|.  |.++
T Consensus        89 ~~~A~~~~~~~   99 (514)
T 2gw1_A           89 FADAMFDLSVL   99 (514)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998  6554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=90.88  E-value=1.3  Score=25.64  Aligned_cols=44  Identities=16%  Similarity=0.262  Sum_probs=26.4

Q ss_pred             cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677           4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus         4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      ..+.+++|..+...    +| ++..|..+|.......+++-|...|-+.
T Consensus        13 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   61 (136)
T 2fo7_A           13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA   61 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34566666655432    22 4566667777777777777776666554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=90.85  E-value=1.2  Score=31.74  Aligned_cols=73  Identities=11%  Similarity=-0.003  Sum_probs=55.8

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ...+.+++|+.+..    ..| ++..|..+|...+..++++-|...|-+.-...--        -..--...|.++...|
T Consensus        15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g   86 (281)
T 2c2l_A           15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--------SVKAHFFLGQCQLEME   86 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--------CHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcC
Confidence            45688888887665    355 6889999999999999999999988876544210        0112247899999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|.
T Consensus        87 ~~~~A~   92 (281)
T 2c2l_A           87 SYDEAI   92 (281)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            999999

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=90.84  E-value=1.1  Score=29.51  Aligned_cols=72  Identities=13%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677           4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk   78 (99)
                      ..+.+++|+.+.+.    .| ++..|..+|..-...++++-|...|-++-+..        .+.+.--...|.++...|+
T Consensus       151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~  222 (258)
T 3uq3_A          151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIRKATAQIAVKE  222 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTC
T ss_pred             HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHhh
Confidence            45666777665443    33 46677788887777788887777776652110        0111122467888888999


Q ss_pred             ccchh
Q psy8677          79 FQTAV   83 (99)
Q Consensus        79 f~EAe   83 (99)
                      +++|.
T Consensus       223 ~~~A~  227 (258)
T 3uq3_A          223 YASAL  227 (258)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99988

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=90.48  E-value=0.29  Score=39.62  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=48.5

Q ss_pred             cccCHHHHHHHHHhCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677           4 KNVGLNEAFQFVEAHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV   83 (99)
Q Consensus         4 e~~~~~eA~~~~~~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe   83 (99)
                      .-+.+++|++-++...++..|..+.......++|+.|..|...+.            .-|+......+.+.-.|+|+||-
T Consensus       160 ~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------------~~ad~l~~lv~~Yek~G~~eEai  227 (449)
T 1b89_A          160 HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV------------VHADELEELINYYQDRGYFEELI  227 (449)
T ss_dssp             TTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHH------------hCHhhHHHHHHHHHHCCCHHHHH
Confidence            346788888888888888888888888888888888876655422            11222233556777889999995

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=90.37  E-value=1  Score=31.04  Aligned_cols=77  Identities=16%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|+.+...    .| ++..|..+|...+..++++-|...|-++-+..        .+.+.--...|.++...|
T Consensus        14 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~   85 (359)
T 3ieg_A           14 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------MDFTAARLQRGHLLLKQG   85 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHcC
Confidence            467889999877653    44 58899999999999999999999887653221        011122357899999999


Q ss_pred             Cccchh--hHhH
Q psy8677          78 RFQTAV--YCDI   87 (99)
Q Consensus        78 kf~EAe--Y~~i   87 (99)
                      ++++|.  |.+.
T Consensus        86 ~~~~A~~~~~~~   97 (359)
T 3ieg_A           86 KLDEAEDDFKKV   97 (359)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHH
Confidence            999998  5443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=90.22  E-value=2.2  Score=27.33  Aligned_cols=73  Identities=10%  Similarity=0.030  Sum_probs=51.6

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      .+.+.+++|..+.+    .+| ++..|..||..-...++++-|..+|-++-+..-        +-+.--...|.++.-.|
T Consensus        42 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~  113 (150)
T 4ga2_A           42 YEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP--------TQKDLVLKIAELLCKND  113 (150)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcC
Confidence            35678888876544    455 588899999999999999999988876522110        01112246788999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      +++||.
T Consensus       114 ~~~~aa  119 (150)
T 4ga2_A          114 VTDGRA  119 (150)
T ss_dssp             SSSSHH
T ss_pred             ChHHHH
Confidence            999876

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=90.19  E-value=1.4  Score=31.98  Aligned_cols=77  Identities=16%  Similarity=0.145  Sum_probs=54.6

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|+.+...    .| ++..|..+|...+..++++-|...|-++-+..        .+...--...|.++...|
T Consensus        37 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g  108 (450)
T 2y4t_A           37 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLLKQG  108 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcC
Confidence            456788888877653    33 57889999999999999999988887653221        011112246889999999


Q ss_pred             Cccchh--hHhH
Q psy8677          78 RFQTAV--YCDI   87 (99)
Q Consensus        78 kf~EAe--Y~~i   87 (99)
                      ++++|.  |.++
T Consensus       109 ~~~~A~~~~~~~  120 (450)
T 2y4t_A          109 KLDEAEDDFKKV  120 (450)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999998  5544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=90.18  E-value=0.95  Score=32.31  Aligned_cols=85  Identities=16%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc----------------------hHH
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG----------------------LQL   55 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~----------------------v~~   55 (99)
                      +..+.+++|....+    ..| ++..|..||...+..++++-|...|-++-...-                      +..
T Consensus       128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~  207 (287)
T 3qou_A          128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQ  207 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHH
Confidence            56788999987655    345 688999999999999999999999988744321                      111


Q ss_pred             HHHh-hCCCC-H--HHHHHHHHHHcCCccchh--hHhH
Q psy8677          56 IKSL-RALPD-D--IMKHAYIAQHQGRFQTAV--YCDI   87 (99)
Q Consensus        56 I~~l-~~l~~-~--~~~~Aei~ay~gkf~EAe--Y~~i   87 (99)
                      +++. +.-|+ .  -...|.++.-.|++++|.  |.++
T Consensus       208 l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~  245 (287)
T 3qou_A          208 LQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH  245 (287)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            2221 11222 2  246889999999999998  5543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=90.16  E-value=0.97  Score=32.56  Aligned_cols=67  Identities=12%  Similarity=0.047  Sum_probs=45.5

Q ss_pred             cccCHHHHHHHHHh------CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHc
Q psy8677           4 KNVGLNEAFQFVEA------HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ   76 (99)
Q Consensus         4 e~~~~~eA~~~~~~------~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~   76 (99)
                      ..+..++|++..+.      .| ++..|-.+|...+..++++-|...|-+ .+  .+          .--...|.++.-.
T Consensus        77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~--~~----------~~~~~l~~~~~~~  143 (291)
T 3mkr_A           77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GD--SL----------ECMAMTVQILLKL  143 (291)
T ss_dssp             CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CC--SH----------HHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CC--CH----------HHHHHHHHHHHHC
Confidence            34567888876653      24 577888889999999999999888877 11  11          1123456677777


Q ss_pred             CCccchh
Q psy8677          77 GRFQTAV   83 (99)
Q Consensus        77 gkf~EAe   83 (99)
                      |++++|.
T Consensus       144 g~~~~A~  150 (291)
T 3mkr_A          144 DRLDLAR  150 (291)
T ss_dssp             TCHHHHH
T ss_pred             CCHHHHH
Confidence            7777776

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=90.15  E-value=1.7  Score=29.65  Aligned_cols=77  Identities=19%  Similarity=0.051  Sum_probs=56.2

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|..+.+.    .| ++..|..+|......++++-|...|-+.-...        .+-..--...|.++...|
T Consensus        32 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~  103 (327)
T 3cv0_A           32 LKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVHAALAVSHTNEH  103 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------cCCHHHHHHHHHHHHHcC
Confidence            456888999877654    34 57889999999999999999999888763321        011112246899999999


Q ss_pred             Cccchh--hHhH
Q psy8677          78 RFQTAV--YCDI   87 (99)
Q Consensus        78 kf~EAe--Y~~i   87 (99)
                      ++++|.  |.+.
T Consensus       104 ~~~~A~~~~~~~  115 (327)
T 3cv0_A          104 NANAALASLRAW  115 (327)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999998  5554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=90.00  E-value=0.67  Score=35.15  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=55.7

Q ss_pred             ccccCHHHHHHHHHh----------CCC--hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCH--HHH
Q psy8677           3 LKNVGLNEAFQFVEA----------HPH--PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDD--IMK   68 (99)
Q Consensus         3 le~~~~~eA~~~~~~----------~~h--~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~--~~~   68 (99)
                      ...+.+++|..+.+.          .|.  ...|..||..-...++++-|...|-+.-+..          -++.  -..
T Consensus       486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------p~~~~~~~~  555 (597)
T 2xpi_A          486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS----------TNDANVHTA  555 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------SCCHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------CCChHHHHH
Confidence            356788888877654          344  5689999999999999999999887753221          1122  246


Q ss_pred             HHHHHHHcCCccchh--hHhH
Q psy8677          69 HAYIAQHQGRFQTAV--YCDI   87 (99)
Q Consensus        69 ~Aei~ay~gkf~EAe--Y~~i   87 (99)
                      .|.++.-.|++++|.  |.++
T Consensus       556 l~~~~~~~g~~~~A~~~~~~~  576 (597)
T 2xpi_A          556 IALVYLHKKIPGLAITHLHES  576 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHH
Confidence            889999999999999  5544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=89.99  E-value=1.8  Score=25.06  Aligned_cols=76  Identities=14%  Similarity=0.212  Sum_probs=52.9

Q ss_pred             cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677           4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk   78 (99)
                      ..+.+++|..+.+.    +| ++..|..+|......++++-|...|-++-..        -..-+.--...|.++...|+
T Consensus        47 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~  118 (136)
T 2fo7_A           47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGD  118 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTC
T ss_pred             HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHcc
Confidence            46788888887653    34 5778899999989999999888877654221        11111123468899999999


Q ss_pred             ccchh--hHhH
Q psy8677          79 FQTAV--YCDI   87 (99)
Q Consensus        79 f~EAe--Y~~i   87 (99)
                      +++|.  |.+.
T Consensus       119 ~~~A~~~~~~~  129 (136)
T 2fo7_A          119 YDEAIEYYQKA  129 (136)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998  5443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=89.88  E-value=1.8  Score=25.16  Aligned_cols=76  Identities=9%  Similarity=0.087  Sum_probs=53.2

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC----CCHHHHHHHHH
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL----PDDIMKHAYIA   73 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l----~~~~~~~Aei~   73 (99)
                      ...+.+++|+.+..    ..| ++..|..+|..-...++++-|...|-++-+...     .....    ..--...|.++
T Consensus        15 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~   89 (131)
T 1elr_A           15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-----ENREDYRQIAKAYARIGNSY   89 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-----ccchhHHHHHHHHHHHHHHH
Confidence            35678888887654    344 578899999999999999999988877533210     00000    11224689999


Q ss_pred             HHcCCccchh
Q psy8677          74 QHQGRFQTAV   83 (99)
Q Consensus        74 ay~gkf~EAe   83 (99)
                      ...|++++|.
T Consensus        90 ~~~~~~~~A~   99 (131)
T 1elr_A           90 FKEEKYKDAI   99 (131)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHhccHHHHH
Confidence            9999999998

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=89.64  E-value=2.2  Score=28.31  Aligned_cols=17  Identities=18%  Similarity=0.010  Sum_probs=11.9

Q ss_pred             HHHHHHHHHcCCccchh
Q psy8677          67 MKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        67 ~~~Aei~ay~gkf~EAe   83 (99)
                      ...+.++...|++++|.
T Consensus       213 ~~~~~~~~~~g~~~~A~  229 (252)
T 2ho1_A          213 LLGIRLAKVFEDRDTAA  229 (252)
T ss_dssp             HHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHccCHHHHH
Confidence            35666777777777777

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=89.59  E-value=2.2  Score=27.85  Aligned_cols=44  Identities=9%  Similarity=0.048  Sum_probs=27.4

Q ss_pred             cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677           4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus         4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      ..+.+++|..+.+.    .| ++..|..+|..-...++++-|...|-++
T Consensus        69 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  117 (243)
T 2q7f_A           69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA  117 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34566666655442    23 4666777777777777777777666554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=89.57  E-value=2.1  Score=25.45  Aligned_cols=63  Identities=16%  Similarity=0.099  Sum_probs=46.9

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh--hHhHHHH
Q psy8677          20 HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV--YCDIIEY   90 (99)
Q Consensus        20 h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe--Y~~i~~~   90 (99)
                      ++..|-.||...+..++++-|...|-++-...        -+-+.--...|.++...|++++|.  |.+.-..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD--------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            57889999999999999999999887763221        111223357899999999999999  6554433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=89.55  E-value=1.9  Score=30.53  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=44.5

Q ss_pred             cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677           4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk   78 (99)
                      ..+.+++|..+.+.    .| ++..|..||..-...++++-|...|-+.-...        .+.+.--...|.++.-.|+
T Consensus       225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~  296 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--------PGFIRSRYNLGISCINLGA  296 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTC
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHCCC
Confidence            34566666655432    33 46667777777777777777766665532110        0001122467888888899


Q ss_pred             ccchh--hHhH
Q psy8677          79 FQTAV--YCDI   87 (99)
Q Consensus        79 f~EAe--Y~~i   87 (99)
                      +++|.  |.+.
T Consensus       297 ~~~A~~~~~~a  307 (365)
T 4eqf_A          297 YREAVSNFLTA  307 (365)
T ss_dssp             CHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988  5443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=89.09  E-value=2.3  Score=27.22  Aligned_cols=44  Identities=16%  Similarity=0.238  Sum_probs=27.1

Q ss_pred             cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677           4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus         4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      ..+.+++|..+..    ..| ++..|..+|..-...++++-|...|-++
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   68 (225)
T 2vq2_A           20 RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA   68 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4566666665543    233 3566777777777777777776666544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=89.04  E-value=1.9  Score=28.28  Aligned_cols=77  Identities=13%  Similarity=0.152  Sum_probs=55.7

Q ss_pred             ccccCHHHHHHHHHh----CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC-------CCHHHHHHH
Q psy8677           3 LKNVGLNEAFQFVEA----HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL-------PDDIMKHAY   71 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l-------~~~~~~~Ae   71 (99)
                      +..+.+++|+.+...    .+++..|..+|..-...++++-|...|.+.-+        .-.+.       ..--...|.
T Consensus        16 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~~l~~   87 (258)
T 3uq3_A           16 YKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVE--------QGREMRADYKVISKSFARIGN   87 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--------hCcccccchHHHHHHHHHHHH
Confidence            356778888876543    26789999999999999999999999887422        11111       112247889


Q ss_pred             HHHHcCCccchh--hHhH
Q psy8677          72 IAQHQGRFQTAV--YCDI   87 (99)
Q Consensus        72 i~ay~gkf~EAe--Y~~i   87 (99)
                      ++.-.|++++|.  |.+.
T Consensus        88 ~~~~~~~~~~A~~~~~~a  105 (258)
T 3uq3_A           88 AYHKLGDLKKTIEYYQKS  105 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHH
Confidence            999999999998  5443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=89.02  E-value=2.3  Score=29.02  Aligned_cols=17  Identities=12%  Similarity=0.122  Sum_probs=12.4

Q ss_pred             HHHHHHHHHcCCccchh
Q psy8677          67 MKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        67 ~~~Aei~ay~gkf~EAe   83 (99)
                      ...|.++...|++++|.
T Consensus       244 ~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          244 YNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             HHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhccHHHHH
Confidence            35677777778888777

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=88.99  E-value=2.7  Score=25.84  Aligned_cols=16  Identities=25%  Similarity=0.486  Sum_probs=10.9

Q ss_pred             HHHHHHHHcCCccchh
Q psy8677          68 KHAYIAQHQGRFQTAV   83 (99)
Q Consensus        68 ~~Aei~ay~gkf~EAe   83 (99)
                      ..|.++...|++++|.
T Consensus       115 ~~a~~~~~~~~~~~A~  130 (186)
T 3as5_A          115 RLGVALDNLGRFDEAI  130 (186)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCcHHHHH
Confidence            4566666777777776

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=88.96  E-value=2.2  Score=29.12  Aligned_cols=44  Identities=23%  Similarity=0.222  Sum_probs=25.3

Q ss_pred             cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhcc-CHHHHHHHHHHc
Q psy8677           4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLL-SLNHAEQALVNC   47 (99)
Q Consensus         4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~-~l~iAe~AFvr~   47 (99)
                      ..+.+++|+.++.    ..| ++..|..+|......+ +++-|...|-+.
T Consensus        68 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  117 (330)
T 3hym_B           68 ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA  117 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3455556655433    233 3566666666666666 666666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=88.92  E-value=1.8  Score=28.84  Aligned_cols=46  Identities=11%  Similarity=0.038  Sum_probs=28.2

Q ss_pred             cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677           4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQD   49 (99)
Q Consensus         4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d   49 (99)
                      ..+.+++|..+..    ..| ++..|..+|..-...++++-|...|-++-+
T Consensus        83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A           83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            3456666665443    233 456677777777777777777777666543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=88.83  E-value=1.4  Score=29.67  Aligned_cols=78  Identities=14%  Similarity=0.056  Sum_probs=54.3

Q ss_pred             cccccCHHHHHHHHHh----CCC-hHHHHH----------------HHHHHHhccCHHHHHHHHHHcCCccchHHHHHhh
Q psy8677           2 YLKNVGLNEAFQFVEA----HPH-PRLWKL----------------LADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLR   60 (99)
Q Consensus         2 ~le~~~~~eA~~~~~~----~~h-~~lW~~----------------LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~   60 (99)
                      +++.+.+++|+.....    .|. +..|-.                ||..-...++++-|..+|-+.-..+        -
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p   85 (208)
T 3urz_A           14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--------P   85 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------C
Confidence            3567889999876544    443 556777                9999999999999998887642211        0


Q ss_pred             CCCCHHHHHHHHHHHcCCccchh--hHhH
Q psy8677          61 ALPDDIMKHAYIAQHQGRFQTAV--YCDI   87 (99)
Q Consensus        61 ~l~~~~~~~Aei~ay~gkf~EAe--Y~~i   87 (99)
                      +-+.--...|.++.-.|++++|.  |.+.
T Consensus        86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  114 (208)
T 3urz_A           86 NNVDCLEACAEMQVCRGQEKDALRMYEKI  114 (208)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            00112246899999999999998  5543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=88.78  E-value=1.6  Score=30.99  Aligned_cols=77  Identities=22%  Similarity=0.239  Sum_probs=55.2

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|..+.+.    .| ++..|..||......++++-|...|-+.-...        .+...--...|.++...|
T Consensus        76 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--------PNNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHccc
Confidence            356778888877653    33 57889999999999999999999887763221        011112246889999999


Q ss_pred             Cccchh--hHhH
Q psy8677          78 RFQTAV--YCDI   87 (99)
Q Consensus        78 kf~EAe--Y~~i   87 (99)
                      ++++|.  |.+.
T Consensus       148 ~~~~A~~~~~~a  159 (365)
T 4eqf_A          148 HQQDACEALKNW  159 (365)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            999999  5544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=88.56  E-value=3  Score=28.40  Aligned_cols=83  Identities=13%  Similarity=0.195  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCcc----------------------chHHHHHh
Q psy8677           7 GLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYA----------------------GLQLIKSL   59 (99)
Q Consensus         7 ~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~----------------------~v~~I~~l   59 (99)
                      .+++|..+...    .| ++..|..+|..-...++++-|...|-+.-...                      .++++++.
T Consensus       106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  185 (330)
T 3hym_B          106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA  185 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            56666655432    33 35567777777777777777666665542211                      11222222


Q ss_pred             hCC-CC---HHHHHHHHHHHcCCccchh--hHhHHH
Q psy8677          60 RAL-PD---DIMKHAYIAQHQGRFQTAV--YCDIIE   89 (99)
Q Consensus        60 ~~l-~~---~~~~~Aei~ay~gkf~EAe--Y~~i~~   89 (99)
                      -++ |+   --...|.++...|++++|.  |.+.-.
T Consensus       186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            222 11   1236788888888888888  554443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=88.44  E-value=2.3  Score=27.12  Aligned_cols=42  Identities=19%  Similarity=0.178  Sum_probs=20.6

Q ss_pred             ccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHH
Q psy8677           5 NVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVN   46 (99)
Q Consensus         5 ~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr   46 (99)
                      +|.+++|+...+    ..| ++.-|..||..-...++++-|...|.+
T Consensus        18 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~   64 (184)
T 3vtx_A           18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKK   64 (184)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            445555544432    233 345555555555555555555544433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=88.37  E-value=3.8  Score=27.08  Aligned_cols=70  Identities=7%  Similarity=-0.096  Sum_probs=53.0

Q ss_pred             ccccCHHHHHHHHH----hC--CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC---HHHHHHHHH
Q psy8677           3 LKNVGLNEAFQFVE----AH--PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIA   73 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~--~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~---~~~~~Aei~   73 (99)
                      +..+.+++|+.+..    ..  +++..|-.+|......++++-|...|-+.-.           .-|+   --...|.++
T Consensus        18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A           18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-----------KNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------TTCSHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-----------hCcchHHHHHHHHHHH
Confidence            45678888887654    34  5678888899999999999999888776532           1222   224789999


Q ss_pred             HHcCCccchh
Q psy8677          74 QHQGRFQTAV   83 (99)
Q Consensus        74 ay~gkf~EAe   83 (99)
                      ...|++++|.
T Consensus        87 ~~~~~~~~A~   96 (228)
T 4i17_A           87 RDMKNNQEYI   96 (228)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHcccHHHHH
Confidence            9999999998

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=88.35  E-value=0.79  Score=30.23  Aligned_cols=73  Identities=14%  Similarity=-0.061  Sum_probs=51.8

Q ss_pred             ccccCHHHHHHHHHhC----C-Ch----------------HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhC
Q psy8677           3 LKNVGLNEAFQFVEAH----P-HP----------------RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRA   61 (99)
Q Consensus         3 le~~~~~eA~~~~~~~----~-h~----------------~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~   61 (99)
                      +..+.+++|+.+....    | ++                ..|..+|...+...+++-|...|-++-...-        .
T Consensus        49 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~  120 (198)
T 2fbn_A           49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--------N  120 (198)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------T
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------c
Confidence            3567888888765532    2 23                7899999999999999999888876543211        1


Q ss_pred             CCCHHHHHHHHHHHcCCccchh
Q psy8677          62 LPDDIMKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        62 l~~~~~~~Aei~ay~gkf~EAe   83 (99)
                      -+.--...|.++...|++++|.
T Consensus       121 ~~~~~~~lg~~~~~~~~~~~A~  142 (198)
T 2fbn_A          121 NVKALYKLGVANMYFGFLEEAK  142 (198)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcccHHHHH
Confidence            1112357899999999999998

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=87.84  E-value=1.2  Score=31.29  Aligned_cols=76  Identities=22%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|+.+...    .| ++..|..||......++++-|...|.+.-...        .+-+.--...|.++...|
T Consensus        75 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g  146 (368)
T 1fch_A           75 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNES  146 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcC
Confidence            356778888776654    33 57788889998888999998888887653221        011112246888999999


Q ss_pred             Cccchh--hHh
Q psy8677          78 RFQTAV--YCD   86 (99)
Q Consensus        78 kf~EAe--Y~~   86 (99)
                      ++++|.  |.+
T Consensus       147 ~~~~A~~~~~~  157 (368)
T 1fch_A          147 LQRQACEILRD  157 (368)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            999998  544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=87.56  E-value=2.8  Score=29.98  Aligned_cols=84  Identities=20%  Similarity=0.263  Sum_probs=46.7

Q ss_pred             cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCc---------------------c-chHHH
Q psy8677           4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDY---------------------A-GLQLI   56 (99)
Q Consensus         4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~---------------------~-~v~~I   56 (99)
                      ..+.+++|....+    .+| ++..|..||..-...++++-|...|-+.-..                     + -+.+.
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  328 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4556666665543    234 3566777777777777777776666544211                     0 11122


Q ss_pred             HHhhCC-CC---HHHHHHHHHHHcCCccchh--hHhH
Q psy8677          57 KSLRAL-PD---DIMKHAYIAQHQGRFQTAV--YCDI   87 (99)
Q Consensus        57 ~~l~~l-~~---~~~~~Aei~ay~gkf~EAe--Y~~i   87 (99)
                      ++.-++ |+   .-...|.++.-.|++++|.  |.+.
T Consensus       329 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  365 (388)
T 1w3b_A          329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            222222 22   1235788888889999888  5543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=87.56  E-value=0.74  Score=29.36  Aligned_cols=54  Identities=13%  Similarity=0.126  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677          22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe   83 (99)
                      ..|..+|..-+..++++-|...|-++-..+-        +-+.--..+|.++...|+|++|.
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~~~~g~~~~~~g~~~~A~  117 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREE--------TNEKALFRRAKARIAAWKLDEAE  117 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHHhcHHHHH
Confidence            6788888888888888888877765422210        01112357999999999999998

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=87.43  E-value=1.3  Score=30.04  Aligned_cols=70  Identities=19%  Similarity=0.111  Sum_probs=42.5

Q ss_pred             ccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCc
Q psy8677           5 NVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRF   79 (99)
Q Consensus         5 ~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf   79 (99)
                      ++.+++|+...    ...| ++..|..||..-...++++-|..+|-+.-...  +       -+.--...|.++.-.|++
T Consensus        97 ~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~-------~~~~~~~la~~~~~~g~~  167 (217)
T 2pl2_A           97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--D-------TPEIRSALAELYLSMGRL  167 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C-------CHHHHHHHHHHHHHHTCH
T ss_pred             ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c-------chHHHHHHHHHHHHcCCH
Confidence            46677777544    3455 47778888888888888888888886652221  0       001112455556666666


Q ss_pred             cchh
Q psy8677          80 QTAV   83 (99)
Q Consensus        80 ~EAe   83 (99)
                      +||.
T Consensus       168 ~~A~  171 (217)
T 2pl2_A          168 DEAL  171 (217)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=87.35  E-value=4.6  Score=26.60  Aligned_cols=83  Identities=16%  Similarity=0.082  Sum_probs=55.3

Q ss_pred             cccCHHHHHHHHHh----------CCC---hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH----
Q psy8677           4 KNVGLNEAFQFVEA----------HPH---PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI----   66 (99)
Q Consensus         4 e~~~~~eA~~~~~~----------~~h---~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~----   66 (99)
                      ..+.+++|..+...          ..+   ...|..||..-...++++-|...|.+.-     ++.+.+..-+++.    
T Consensus        55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~  129 (283)
T 3edt_B           55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-----EIREKVLGKFHPDVAKQ  129 (283)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----HHHHHHcCCCChHHHHH
Confidence            34566666655443          112   4568889999999999999999987753     2333332222222    


Q ss_pred             -HHHHHHHHHcCCccchh--hHhHHHHH
Q psy8677          67 -MKHAYIAQHQGRFQTAV--YCDIIEYL   91 (99)
Q Consensus        67 -~~~Aei~ay~gkf~EAe--Y~~i~~~~   91 (99)
                       ...|.++...|++++|.  |.+.-...
T Consensus       130 ~~~la~~~~~~g~~~~A~~~~~~al~~~  157 (283)
T 3edt_B          130 LNNLALLCQNQGKAEEVEYYYRRALEIY  157 (283)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             46899999999999999  66555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=87.24  E-value=2  Score=33.48  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             cccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHc
Q psy8677           2 YLKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ   76 (99)
Q Consensus         2 ~le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~   76 (99)
                      .+..+.+++|.....    ..| +...|..+|..-+...+++-|...|-+.-..+-        +-..--...|.++..+
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGYYRRAASNMAL   87 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------TCHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHc
Confidence            356788889887765    345 488999999999999999999988876533211        0011224678888889


Q ss_pred             CCccchh
Q psy8677          77 GRFQTAV   83 (99)
Q Consensus        77 gkf~EAe   83 (99)
                      |++++|.
T Consensus        88 g~~~eA~   94 (477)
T 1wao_1           88 GKFRAAL   94 (477)
T ss_dssp             TCHHHHH
T ss_pred             CCHHHHH
Confidence            9999998

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=87.12  E-value=1.5  Score=29.70  Aligned_cols=76  Identities=16%  Similarity=0.031  Sum_probs=44.9

Q ss_pred             ccccCHHHHHHHHHh----CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHH--HHHHHHHHHc
Q psy8677           3 LKNVGLNEAFQFVEA----HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDI--MKHAYIAQHQ   76 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~--~~~Aei~ay~   76 (99)
                      ...+.+++|+...+.    ..++..|..||..-...++++-|...|-+.-..          .-.+..  ...|.++.-.
T Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~P~~~~~~~~la~~~~~~  198 (217)
T 2pl2_A          129 ALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQ----------APKDLDLRVRYASALLLK  198 (217)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHTC-
T ss_pred             HHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHHc
Confidence            346777887766543    267899999999999999999999888765321          111222  4678899999


Q ss_pred             CCccchh--hHhHH
Q psy8677          77 GRFQTAV--YCDII   88 (99)
Q Consensus        77 gkf~EAe--Y~~i~   88 (99)
                      |++++|.  |.++.
T Consensus       199 g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          199 GKAEEAARAAALEH  212 (217)
T ss_dssp             --------------
T ss_pred             cCHHHHHHHHHHHh
Confidence            9999998  76654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=86.67  E-value=1.4  Score=29.57  Aligned_cols=47  Identities=17%  Similarity=0.207  Sum_probs=34.3

Q ss_pred             ccccCHHHHHHHHHh----CCC-hHHHHHHHHHHHhccCHHHHHHHHHHcCC
Q psy8677           3 LKNVGLNEAFQFVEA----HPH-PRLWKLLADKSLDLLSLNHAEQALVNCQD   49 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~d   49 (99)
                      +..+.+++|+.+...    .|. +..|..+|..-...++++-|...|-++-+
T Consensus        14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   65 (272)
T 3u4t_A           14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS   65 (272)
T ss_dssp             HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            456778888876653    443 55888888888888888888888776633

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=86.34  E-value=3.1  Score=28.52  Aligned_cols=73  Identities=12%  Similarity=0.125  Sum_probs=53.7

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ...+.+++|+.+...    .| ++..|..+|..-+..++++-|...|-++-....        +.+.--...|.++...|
T Consensus       131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~  202 (359)
T 3ieg_A          131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS--------DNTEAFYKISTLYYQLG  202 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS--------CCHHHHHHHHHHHHHHT
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcC
Confidence            356778888877654    34 578899999999999999999888876533210        01122357899999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|.
T Consensus       203 ~~~~A~  208 (359)
T 3ieg_A          203 DHELSL  208 (359)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            999998

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=86.29  E-value=3.7  Score=24.44  Aligned_cols=65  Identities=11%  Similarity=-0.012  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCC---CHHHHHHHHHHHcCCccchh--hHhHHHHH
Q psy8677          22 RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAV--YCDIIEYL   91 (99)
Q Consensus        22 ~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~---~~~~~~Aei~ay~gkf~EAe--Y~~i~~~~   91 (99)
                      ..|..+|......++++-|...|.+.-     ++.......+   .--...|.++...|++++|.  |.+.-...
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHL-----AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            457778888888889998888886642     2222221111   11246788999999999998  55544433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=86.07  E-value=1.8  Score=28.71  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhC---C---ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC-----HHHHHHHHHHHc
Q psy8677           8 LNEAFQFVEAH---P---HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD-----DIMKHAYIAQHQ   76 (99)
Q Consensus         8 ~~eA~~~~~~~---~---h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~-----~~~~~Aei~ay~   76 (99)
                      +++|++.+...   .   ....|..||..-...++++-|...|-++-     ++.+.+-.-++     --...|.++...
T Consensus        24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~   98 (283)
T 3edt_B           24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-----AIREKTLGKDHPAVAATLNNLAVLYGKR   98 (283)
T ss_dssp             HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-----HHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence            56677766532   1   25668899999999999999999987763     33333311111     224689999999


Q ss_pred             CCccchh--hHhHHHHH
Q psy8677          77 GRFQTAV--YCDIIEYL   91 (99)
Q Consensus        77 gkf~EAe--Y~~i~~~~   91 (99)
                      |++++|.  |.+.-...
T Consensus        99 g~~~~A~~~~~~al~~~  115 (283)
T 3edt_B           99 GKYKEAEPLCKRALEIR  115 (283)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence            9999999  66554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=85.12  E-value=4.1  Score=29.12  Aligned_cols=42  Identities=12%  Similarity=0.136  Sum_probs=25.0

Q ss_pred             cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHH
Q psy8677           4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALV   45 (99)
Q Consensus         4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFv   45 (99)
                      ..|.+++|.+.+..    .| ++..|..||...+..++++-|...|.
T Consensus        11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~   57 (388)
T 1w3b_A           11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST   57 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45667777665432    33 35566666666666666666665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=85.00  E-value=5.9  Score=25.60  Aligned_cols=81  Identities=7%  Similarity=-0.077  Sum_probs=53.9

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccc----hHHHHHhhCC-C---CHHHHH
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAG----LQLIKSLRAL-P---DDIMKH   69 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~----v~~I~~l~~l-~---~~~~~~   69 (99)
                      ...+.+++|+.+...    .| ++..|..+|..-...++++-|...|-++-+...    +.+-..-... +   .--...
T Consensus        48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (213)
T 1hh8_A           48 TILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI  127 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence            356788888876643    33 578899999999999999999998877533110    0000000000 0   123578


Q ss_pred             HHHHHHcCCccchh
Q psy8677          70 AYIAQHQGRFQTAV   83 (99)
Q Consensus        70 Aei~ay~gkf~EAe   83 (99)
                      |.++...|++++|.
T Consensus       128 ~~~~~~~g~~~~A~  141 (213)
T 1hh8_A          128 AFMYAKKEEWKKAE  141 (213)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHccCHHHHH
Confidence            99999999999998

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=84.97  E-value=3.7  Score=31.01  Aligned_cols=74  Identities=16%  Similarity=-0.062  Sum_probs=54.9

Q ss_pred             ccccCHHHHHHHHH----hCCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677           3 LKNVGLNEAFQFVE----AHPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk   78 (99)
                      +..+.+++|..+.+    ..|++..|..||......++++-|...|.+....+.         -+.--...|.++.-.|+
T Consensus        95 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~  165 (597)
T 2xpi_A           95 LMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR---------SSACRYLAAFCLVKLYD  165 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGT---------CHHHHHHHHHHHHHTTC
T ss_pred             HHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHhh
Confidence            45678888887654    467788899999999999999999999887643211         01122467888889999


Q ss_pred             ccchh--hH
Q psy8677          79 FQTAV--YC   85 (99)
Q Consensus        79 f~EAe--Y~   85 (99)
                      +++|.  |.
T Consensus       166 ~~~A~~~~~  174 (597)
T 2xpi_A          166 WQGALNLLG  174 (597)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            99998  54

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=84.88  E-value=6.8  Score=26.24  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=56.7

Q ss_pred             ccccCHHHHHHHHHh----CCCh-----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC---HHHHHH
Q psy8677           3 LKNVGLNEAFQFVEA----HPHP-----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD---DIMKHA   70 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~h~-----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~---~~~~~A   70 (99)
                      +..+.+++|..+.+.    .|.+     ..|..+|......++++-|...|-+.-+     +.....+-+.   --...|
T Consensus        16 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~l~   90 (338)
T 3ro2_A           16 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-----LARTIGDQLGEAKASGNLG   90 (338)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHTCHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HhhcccccHHHHHHHHHHH
Confidence            356778888877654    4543     6788999999999999999988876432     2222221111   124688


Q ss_pred             HHHHHcCCccchh--hHhHHHHH
Q psy8677          71 YIAQHQGRFQTAV--YCDIIEYL   91 (99)
Q Consensus        71 ei~ay~gkf~EAe--Y~~i~~~~   91 (99)
                      .++...|++++|.  |.+.-...
T Consensus        91 ~~~~~~g~~~~A~~~~~~al~~~  113 (338)
T 3ro2_A           91 NTLKVLGNFDEAIVCCQRHLDIS  113 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHH
Confidence            9999999999999  65544443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=84.29  E-value=7.4  Score=27.28  Aligned_cols=84  Identities=12%  Similarity=0.090  Sum_probs=56.7

Q ss_pred             ccccCHHHHHHHHH----hCCCh-----HHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC---HHHHHH
Q psy8677           3 LKNVGLNEAFQFVE----AHPHP-----RLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD---DIMKHA   70 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~h~-----~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~---~~~~~A   70 (99)
                      +..+.+++|+.+.+    ..|.+     ..|..||......++++-|...|-+.-     ++...+.+-+.   --...|
T Consensus        20 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~la   94 (406)
T 3sf4_A           20 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-----TLARTIGDQLGEAKASGNLG   94 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHhccccHHHHHHHHHHH
Confidence            35677888887764    34543     578899999999999999998887642     22222211111   124689


Q ss_pred             HHHHHcCCccchh--hHhHHHHH
Q psy8677          71 YIAQHQGRFQTAV--YCDIIEYL   91 (99)
Q Consensus        71 ei~ay~gkf~EAe--Y~~i~~~~   91 (99)
                      .++...|++++|.  |.+.-...
T Consensus        95 ~~~~~~g~~~~A~~~~~~al~~~  117 (406)
T 3sf4_A           95 NTLKVLGNFDEAIVCCQRHLDIS  117 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999999  55544433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=84.24  E-value=5.1  Score=29.62  Aligned_cols=44  Identities=16%  Similarity=0.263  Sum_probs=27.6

Q ss_pred             cccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677           4 KNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus         4 e~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      ..+.+++|..+...    .| ++..|..+|......++++-|...|-++
T Consensus       288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            45566666655432    33 4666777777777777777777766554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=83.69  E-value=3.6  Score=26.18  Aligned_cols=58  Identities=12%  Similarity=0.043  Sum_probs=40.2

Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677          18 HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        18 ~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe   83 (99)
                      |.++..|-.||..-...++++-|..+|-++-+.+-        +-+.--...|.++...|++++|.
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~a~   59 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--------NNVETLLKLGKTYMDIGLPNDAI   59 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHH
Confidence            56789999999999999999999999987622110        00011235677777777777776

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=83.68  E-value=9  Score=26.67  Aligned_cols=17  Identities=6%  Similarity=-0.138  Sum_probs=15.1

Q ss_pred             HHHHHHHHHcCCccchh
Q psy8677          67 MKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        67 ~~~Aei~ay~gkf~EAe   83 (99)
                      ...|.++...|++++|.
T Consensus       334 ~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          334 STLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHhCChHhHH
Confidence            36788999999999999

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=83.67  E-value=5  Score=23.75  Aligned_cols=65  Identities=14%  Similarity=-0.026  Sum_probs=46.8

Q ss_pred             HHhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh--hHhH
Q psy8677          15 VEAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV--YCDI   87 (99)
Q Consensus        15 ~~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe--Y~~i   87 (99)
                      +...| ++..|..||...+..++++-|...|-+.-....        +....-...|.++...|++++|.  |.+.
T Consensus        12 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           12 LAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--------TYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34455 588999999999999999999998876532211        11112246899999999999998  5443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=82.95  E-value=3.6  Score=26.18  Aligned_cols=45  Identities=18%  Similarity=0.218  Sum_probs=27.9

Q ss_pred             ccccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677           3 LKNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus         3 le~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      +..+.+++|+.+.    ...| ++..|..+|...+..++++-|..+|-+.
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   70 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA   70 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3455555555443    3344 5678888888888888888888777654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=82.91  E-value=2.7  Score=23.29  Aligned_cols=55  Identities=11%  Similarity=0.126  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677          21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe   83 (99)
                      +..|..+|.......+++-|...|-+.-+...        +-+.--...|.++...|++++|.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~   63 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------NNAEAWYNLGNAYYKQGDYDEAI   63 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHhhHHHHH
Confidence            56789999999999999999999876533210        01112247899999999999998

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=82.22  E-value=2.2  Score=32.13  Aligned_cols=55  Identities=9%  Similarity=0.013  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677          21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe   83 (99)
                      ...|..||...+...+++-|...|-++-+.+-        +-..--..+|.++...|++++|.
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~eA~  327 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--------SNTKALYRRAQGWQGLKEYDQAL  327 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHHccCHHHHH
Confidence            57788899999999999988888766544321        01112247899999999999998

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=81.94  E-value=2.6  Score=28.11  Aligned_cols=76  Identities=11%  Similarity=0.023  Sum_probs=53.4

Q ss_pred             cccCHHHHHHHHHhCC---------ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHH
Q psy8677           4 KNVGLNEAFQFVEAHP---------HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQ   74 (99)
Q Consensus         4 e~~~~~eA~~~~~~~~---------h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~a   74 (99)
                      ..+.+++|+.+.....         ++..|..+|......++++-|...|-+.-+...        +.+.--...|.++.
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~   88 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--------DMPEVFNYLGIYLT   88 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHH
Confidence            4567788877665322         367799999999999999999998876533210        11112246899999


Q ss_pred             HcCCccchh--hHhH
Q psy8677          75 HQGRFQTAV--YCDI   87 (99)
Q Consensus        75 y~gkf~EAe--Y~~i   87 (99)
                      ..|++++|.  |.+.
T Consensus        89 ~~~~~~~A~~~~~~a  103 (275)
T 1xnf_A           89 QAGNFDAAYEAFDSV  103 (275)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHH
Confidence            999999999  5443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=81.60  E-value=3.8  Score=22.65  Aligned_cols=46  Identities=15%  Similarity=0.249  Sum_probs=36.2

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ   48 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~   48 (99)
                      ...+.+++|..+.+.    .| ++..|..+|..-....+++-|...|-+.-
T Consensus        20 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~   70 (91)
T 1na3_A           20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL   70 (91)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            356788888876543    34 57889999999999999999998887653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=81.42  E-value=11  Score=26.05  Aligned_cols=64  Identities=19%  Similarity=0.216  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCC-CCH--H-----HHHHHHHHHcCCccchh--hHhHHHHH
Q psy8677          23 LWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRAL-PDD--I-----MKHAYIAQHQGRFQTAV--YCDIIEYL   91 (99)
Q Consensus        23 lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l-~~~--~-----~~~Aei~ay~gkf~EAe--Y~~i~~~~   91 (99)
                      .|..+|.....-++++-|..+|-+.=+     +.++--++ |+.  .     ..+|..+.-.|+++||.  |.+.-.+.
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~-----l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALH-----YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999987733     33333333 332  2     47899999999999999  77665544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=81.30  E-value=4  Score=27.52  Aligned_cols=82  Identities=13%  Similarity=0.126  Sum_probs=54.2

Q ss_pred             cccCHHHHHHHHHhC------------C-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCC-----H
Q psy8677           4 KNVGLNEAFQFVEAH------------P-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPD-----D   65 (99)
Q Consensus         4 e~~~~~eA~~~~~~~------------~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~-----~   65 (99)
                      ..+.+++|..+....            + ....|..||......++++-|...|-+.-     ++......-++     -
T Consensus        39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~  113 (311)
T 3nf1_A           39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL-----AIREKTLGKDHPAVAAT  113 (311)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHhCCCChHHHHH
Confidence            456677777665432            1 24568889999999999999999887652     23333211111     2


Q ss_pred             HHHHHHHHHHcCCccchh--hHhHHHH
Q psy8677          66 IMKHAYIAQHQGRFQTAV--YCDIIEY   90 (99)
Q Consensus        66 ~~~~Aei~ay~gkf~EAe--Y~~i~~~   90 (99)
                      -...|.++...|++++|.  |.+.-..
T Consensus       114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~  140 (311)
T 3nf1_A          114 LNNLAVLYGKRGKYKEAEPLCKRALEI  140 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            246899999999999999  5554433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=81.27  E-value=6.5  Score=23.45  Aligned_cols=57  Identities=9%  Similarity=-0.059  Sum_probs=43.7

Q ss_pred             CChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677          19 PHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        19 ~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe   83 (99)
                      .++..|..+|...+..++++-|...|-++-....        +.+.--...|.++...|++++|.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~~~~~~A~   63 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--------LVAVYYTNRALCYLKMQQPEQAL   63 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--------CcHHHHHHHHHHHHHhcCHHHHH
Confidence            4578999999999999999999999877533211        11112246899999999999998

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=81.26  E-value=12  Score=27.29  Aligned_cols=45  Identities=11%  Similarity=0.168  Sum_probs=34.6

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      ...+.+++|..+...    .| ++..|..+|......++++-|...|-++
T Consensus       349 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          349 YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             TTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            456778888776643    33 5788899999999999999888888665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=81.25  E-value=7.1  Score=25.73  Aligned_cols=80  Identities=13%  Similarity=0.037  Sum_probs=54.1

Q ss_pred             cccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCcc--chHHHHHhhCCCCHHHHHHHHHHHc
Q psy8677           4 KNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYA--GLQLIKSLRALPDDIMKHAYIAQHQ   76 (99)
Q Consensus         4 e~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~--~v~~I~~l~~l~~~~~~~Aei~ay~   76 (99)
                      ..+.+++|+.+..    ..| ++..|..+|..-...++++-|...|-++-...  ...+...+   ..--...|.++.-.
T Consensus        54 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~---~~~~~~~g~~~~~~  130 (228)
T 4i17_A           54 NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY---AIYYLKEGQKFQQA  130 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH---HHHHHHHHHHHHHT
T ss_pred             HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH---HHHHHHHhHHHHHh
Confidence            4677888887654    345 46789999999999999999998887653211  01110000   01134688889999


Q ss_pred             CCccchh--hHh
Q psy8677          77 GRFQTAV--YCD   86 (99)
Q Consensus        77 gkf~EAe--Y~~   86 (99)
                      |++++|.  |.+
T Consensus       131 ~~~~~A~~~~~~  142 (228)
T 4i17_A          131 GNIEKAEENYKH  142 (228)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHH
Confidence            9999998  544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=80.91  E-value=6.3  Score=22.96  Aligned_cols=46  Identities=13%  Similarity=0.051  Sum_probs=36.8

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQ   48 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~   48 (99)
                      ...+.+++|..+...    .| ++..|..+|.......+++-|...|.++-
T Consensus        61 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           61 TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            456788888876643    34 57899999999999999999999887653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=80.79  E-value=4.8  Score=23.02  Aligned_cols=27  Identities=7%  Similarity=-0.183  Sum_probs=15.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677          21 PRLWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus        21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      ...|..+|......++++-|...|-+.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~a   30 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQL   30 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555666666666666666555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=80.72  E-value=2.1  Score=31.45  Aligned_cols=53  Identities=11%  Similarity=0.046  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh
Q psy8677          23 LWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV   83 (99)
Q Consensus        23 lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe   83 (99)
                      .|..||..-+...+++-|...|-+.-..+-        +-..--..+|.++...|++++|.
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~a~~~~g~~~~A~  284 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE--------KNPKALFRRGKAKAELGQMDSAR  284 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHH
Confidence            788888888888888888877765422110        01112357899999999999998

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=80.58  E-value=8.6  Score=24.31  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=48.8

Q ss_pred             ccccCHHHHHHHHHh----CC-ChHHHHHHHHH-HHhccCH--HHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHH
Q psy8677           3 LKNVGLNEAFQFVEA----HP-HPRLWKLLADK-SLDLLSL--NHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQ   74 (99)
Q Consensus         3 le~~~~~eA~~~~~~----~~-h~~lW~~LA~~-AL~~~~l--~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~a   74 (99)
                      +..+.+++|..+...    .| ++..|..+|.. .....++  +-|...|-+.-...        .+-+.--...|.++.
T Consensus        55 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~  126 (177)
T 2e2e_A           55 LWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAF  126 (177)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH
Confidence            356778888776543    33 67888889988 6677777  88877765442211        000112246889999


Q ss_pred             HcCCccchh
Q psy8677          75 HQGRFQTAV   83 (99)
Q Consensus        75 y~gkf~EAe   83 (99)
                      ..|++++|.
T Consensus       127 ~~g~~~~A~  135 (177)
T 2e2e_A          127 MQANYAQAI  135 (177)
T ss_dssp             HTTCHHHHH
T ss_pred             HcccHHHHH
Confidence            999999998

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=80.23  E-value=3.9  Score=31.37  Aligned_cols=73  Identities=7%  Similarity=0.006  Sum_probs=45.7

Q ss_pred             ccccCHHHHHHHHHh-----CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVEA-----HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~~-----~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      +..+.+++|+..+..     ..++..|-.+|..-+...+++-|...|-+.-...-        +-..--...+.+....|
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--------~~~~a~~~l~~~~~~~~  399 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--------QNKAARLQISMCQKKAK  399 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHH
Confidence            456778888877654     33577788888888888888888888877644321        00112234555555556


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|+
T Consensus       400 ~~~~a~  405 (457)
T 1kt0_A          400 EHNERD  405 (457)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666555

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=80.19  E-value=3.7  Score=23.49  Aligned_cols=45  Identities=16%  Similarity=0.217  Sum_probs=36.4

Q ss_pred             ccccCHHHHHHHHH----hCC-ChH-HHHHHHHHHHhccCHHHHHHHHHHc
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPR-LWKLLADKSLDLLSLNHAEQALVNC   47 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~-lW~~LA~~AL~~~~l~iAe~AFvr~   47 (99)
                      +..+.+++|+....    ..| ++. .|..+|..-...++++-|..+|-++
T Consensus        11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A           11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45678888887664    455 456 8999999999999999999998775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.33
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	93.84
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	93.5
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	92.84
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	91.93
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	91.03
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	88.02
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	87.58
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	86.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	83.64
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	82.16

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.33  E-value=0.035  Score=35.07  Aligned_cols=76  Identities=11%  Similarity=-0.008  Sum_probs=58.5

Q ss_pred             ccccCHHHHHHHHH----hCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFVE----AHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~~----~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ..+|.|++|+.+..    ..| ++..|..+|..-+..++++-|..+|-++-+++.        +....-...|.++.-.|
T Consensus        15 ~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p--------~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1          15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--------QSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------TCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC--------CcHHHHHHHHHHHHHCC
Confidence            46788999987654    355 689999999999999999999999987754421        00112357999999999


Q ss_pred             Cccchh--hHh
Q psy8677          78 RFQTAV--YCD   86 (99)
Q Consensus        78 kf~EAe--Y~~   86 (99)
                      +|++|.  |.+
T Consensus        87 ~~~~A~~~~~~   97 (201)
T d2c2la1          87 SYDEAIANLQR   97 (201)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            999998  554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.19  Score=30.25  Aligned_cols=78  Identities=17%  Similarity=0.128  Sum_probs=57.5

Q ss_pred             cccccCHHHHHHHHH----hCCC-hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHc
Q psy8677           2 YLKNVGLNEAFQFVE----AHPH-PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ   76 (99)
Q Consensus         2 ~le~~~~~eA~~~~~----~~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~   76 (99)
                      .+..+.+++|+.+..    ..|+ +..|..+|..-+..++++-|...|.+.-..+        -+-+..-...|.++...
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--------PDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc--------cchhhHHHHHHHHHHHc
Confidence            356788999987654    4564 7789999999999999999888876642221        11112335899999999


Q ss_pred             CCccchh--hHhH
Q psy8677          77 GRFQTAV--YCDI   87 (99)
Q Consensus        77 gkf~EAe--Y~~i   87 (99)
                      |++++|.  |.+.
T Consensus        85 ~~~~~A~~~~~~a   97 (117)
T d1elwa_          85 NRFEEAKRTYEEG   97 (117)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            9999998  5543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.19  Score=32.86  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=58.7

Q ss_pred             ccccCHHHHHHHHHh--CCChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCcc
Q psy8677           3 LKNVGLNEAFQFVEA--HPHPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQ   80 (99)
Q Consensus         3 le~~~~~eA~~~~~~--~~h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~   80 (99)
                      .+++.|++|++....  .+++..|-.||..=+..++++-|..+|-+.=+.+        .+.+.--..+|.++.-+|+|+
T Consensus        16 ~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--------p~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          16 ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--------hhhhhhHHHHHHHHHhhccHH
Confidence            467889999987765  3467899999999999999999999998873211        112223357999999999999


Q ss_pred             chh--hHhH
Q psy8677          81 TAV--YCDI   87 (99)
Q Consensus        81 EAe--Y~~i   87 (99)
                      +|.  |.+.
T Consensus        88 ~A~~~~~kA   96 (192)
T d1hh8a_          88 LAIKDLKEA   96 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998  6554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.26  Score=32.93  Aligned_cols=78  Identities=21%  Similarity=0.215  Sum_probs=56.9

Q ss_pred             cccccCHHHHHHH----HHhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHc
Q psy8677           2 YLKNVGLNEAFQF----VEAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ   76 (99)
Q Consensus         2 ~le~~~~~eA~~~----~~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~   76 (99)
                      .++.|.+++|+..    ++.+| ++.-|..||......++++-|..+|.++-+..        .+-+..-...|.++...
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--------ccccccccccccccccc
Confidence            3567889998865    45566 47889999999999999999999998763221        01112335678899999


Q ss_pred             CCccchh--hHhH
Q psy8677          77 GRFQTAV--YCDI   87 (99)
Q Consensus        77 gkf~EAe--Y~~i   87 (99)
                      |++++|.  |.+.
T Consensus       101 ~~~~~A~~~~~~~  113 (323)
T d1fcha_         101 SLQRQACEILRDW  113 (323)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             ccccccccchhhH
Confidence            9999998  5443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.37  Score=31.71  Aligned_cols=73  Identities=12%  Similarity=0.168  Sum_probs=54.0

Q ss_pred             ccccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ...|.+++|.+.+    +..| ++..|..||......++++-|...|-++-...        -+.+.--...|.++.-.|
T Consensus        10 ~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_          10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--------PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHhhhhc
Confidence            3578899999765    4566 57889999999999999999999887652110        011112246899999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|.
T Consensus        82 ~~~~A~   87 (388)
T d1w3ba_          82 QLQEAI   87 (388)
T ss_dssp             CHHHHH
T ss_pred             cccccc
Confidence            999997

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.03  E-value=0.38  Score=28.60  Aligned_cols=73  Identities=18%  Similarity=0.058  Sum_probs=54.6

Q ss_pred             ccccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ..+|.+++|++..    ..+| ++..|..||..-....+++-|..+|.++-..+        -+-+.--...|.++.-+|
T Consensus        27 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          27 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc--------cccccchHHHHHHHHHCC
Confidence            4567888888654    4466 69999999999999999999999998752211        011112257899999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      ++++|.
T Consensus        99 ~~~~A~  104 (112)
T d1hxia_          99 NANAAL  104 (112)
T ss_dssp             HHHHHH
T ss_pred             CHHHHH
Confidence            999997

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.02  E-value=1.8  Score=26.46  Aligned_cols=73  Identities=15%  Similarity=0.181  Sum_probs=52.5

Q ss_pred             ccccCHHHHHHH----HHhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcC
Q psy8677           3 LKNVGLNEAFQF----VEAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQG   77 (99)
Q Consensus         3 le~~~~~eA~~~----~~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~g   77 (99)
                      ...+.|++|+..    +..+| ++..|..||..-+..++++-|...|-++-++.        .+-..--...|.++-..|
T Consensus        21 ~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--------p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          21 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------KKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--------ccchHHHHHHHHHHHHcC
Confidence            346677777654    34455 58889999999999999999998887762221        011112246899999999


Q ss_pred             Cccchh
Q psy8677          78 RFQTAV   83 (99)
Q Consensus        78 kf~EAe   83 (99)
                      +++||.
T Consensus        93 ~~~eA~   98 (159)
T d1a17a_          93 KFRAAL   98 (159)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            999998

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=1.1  Score=29.25  Aligned_cols=82  Identities=22%  Similarity=0.302  Sum_probs=43.9

Q ss_pred             ccCHHHHHHHHH----hCCC-hHHHHHHHHHHHhccCHHHHHHHHHHc---------------------CCcc-chHHHH
Q psy8677           5 NVGLNEAFQFVE----AHPH-PRLWKLLADKSLDLLSLNHAEQALVNC---------------------QDYA-GLQLIK   57 (99)
Q Consensus         5 ~~~~~eA~~~~~----~~~h-~~lW~~LA~~AL~~~~l~iAe~AFvr~---------------------~d~~-~v~~I~   57 (99)
                      .+.+++|..+.+    ..|+ +..|..||..-....+++-|...|-..                     ++++ -+.+.+
T Consensus       250 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  329 (388)
T d1w3ba_         250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR  329 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHH
Confidence            455666655432    3342 555666666666666666655544322                     2222 122222


Q ss_pred             HhhCC-CC-H--HHHHHHHHHHcCCccchh--hHh
Q psy8677          58 SLRAL-PD-D--IMKHAYIAQHQGRFQTAV--YCD   86 (99)
Q Consensus        58 ~l~~l-~~-~--~~~~Aei~ay~gkf~EAe--Y~~   86 (99)
                      +.-++ |+ .  -...|.++.-.|++++|.  |.+
T Consensus       330 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             HHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            22222 22 2  235799999999999998  544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=86.00  E-value=1.5  Score=27.95  Aligned_cols=72  Identities=13%  Similarity=-0.011  Sum_probs=53.9

Q ss_pred             cccCHHHHHHHH----HhCC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCC
Q psy8677           4 KNVGLNEAFQFV----EAHP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         4 e~~~~~eA~~~~----~~~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gk   78 (99)
                      ..|.+++|+...    ...| ++.-|..||..-+..++++-|..+|-++-..+.        +.+..-...|.++...|+
T Consensus        49 ~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~  120 (259)
T d1xnfa_          49 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--------TYNYAHLNRGIALYYGGR  120 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCTHHHHHHHHHHHHTTC
T ss_pred             HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh--------hhhhhHHHHHHHHHHHhh
Confidence            457777777643    3455 588899999999999999999999977643221        122234578999999999


Q ss_pred             ccchh
Q psy8677          79 FQTAV   83 (99)
Q Consensus        79 f~EAe   83 (99)
                      +++|.
T Consensus       121 ~~~A~  125 (259)
T d1xnfa_         121 DKLAQ  125 (259)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99998

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=2.1  Score=28.13  Aligned_cols=74  Identities=16%  Similarity=0.173  Sum_probs=41.1

Q ss_pred             ccCHHHHHHHHHh----CC-ChHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhh-CCCCHHHHHHHHHHHcCC
Q psy8677           5 NVGLNEAFQFVEA----HP-HPRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLR-ALPDDIMKHAYIAQHQGR   78 (99)
Q Consensus         5 ~~~~~eA~~~~~~----~~-h~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~-~l~~~~~~~Aei~ay~gk   78 (99)
                      .+.+++|+.+.+.    .| ++..|..||..-...++++-|..+|-++-.         +. +-+.--...|.++.-.|+
T Consensus       185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------~~p~~~~a~~~lg~~~~~~g~  255 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE---------LQPGYIRSRYNLGISCINLGA  255 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH---------HhhccHHHHHHHHHHHHHCCC
Confidence            4556666544332    33 355666666666666666666666654311         11 111122357778888888


Q ss_pred             ccchh--hHhH
Q psy8677          79 FQTAV--YCDI   87 (99)
Q Consensus        79 f~EAe--Y~~i   87 (99)
                      +++|-  |.+.
T Consensus       256 ~~~A~~~~~~a  266 (323)
T d1fcha_         256 HREAVEHFLEA  266 (323)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887  5543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.16  E-value=1.8  Score=27.81  Aligned_cols=55  Identities=15%  Similarity=0.081  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHcCCccchHHHHHhhCCCCHHHHHHHHHHHcCCccchh--hHhH
Q psy8677          21 PRLWKLLADKSLDLLSLNHAEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAV--YCDI   87 (99)
Q Consensus        21 ~~lW~~LA~~AL~~~~l~iAe~AFvr~~d~~~v~~I~~l~~l~~~~~~~Aei~ay~gkf~EAe--Y~~i   87 (99)
                      -++|.- |..+....+++.|-.+|.++.+..- .          --...|.++.-.|+|++|.  |.+.
T Consensus         6 ~~l~~~-g~~~~~~~d~~~Al~~~~~i~~~~~-~----------~~~nlG~~~~~~g~~~~A~~~~~kA   62 (192)
T d1hh8a_           6 ISLWNE-GVLAADKKDWKGALDAFSAVQDPHS-R----------ICFNIGCMYTILKNMTEAEKAFTRS   62 (192)
T ss_dssp             HHHHHH-HHHHHHTTCHHHHHHHHHTSSSCCH-H----------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHCCCHHHHHHHHHhcCCCCH-H----------HHHHHHHHHHHcCCchhHHHHHHHH
Confidence            368864 9999999999999999987755321 1          1136899999999999999  6553