Psyllid ID: psy8682
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1956 | 2.2.26 [Sep-21-2011] | |||||||
| Q5ZMQ9 | 645 | Peroxisomal targeting sig | yes | N/A | 0.163 | 0.496 | 0.459 | 2e-75 | |
| Q920N5 | 640 | Peroxisomal targeting sig | yes | N/A | 0.159 | 0.487 | 0.452 | 1e-71 | |
| Q2M2R8 | 640 | Peroxisomal targeting sig | yes | N/A | 0.159 | 0.487 | 0.449 | 7e-71 | |
| Q1RMV0 | 640 | Peroxisomal targeting sig | yes | N/A | 0.163 | 0.498 | 0.456 | 2e-70 | |
| O09012 | 639 | Peroxisomal targeting sig | yes | N/A | 0.158 | 0.485 | 0.444 | 2e-70 | |
| P50542 | 639 | Peroxisomal targeting sig | yes | N/A | 0.163 | 0.499 | 0.441 | 7e-70 | |
| O70525 | 640 | Peroxisomal targeting sig | yes | N/A | 0.162 | 0.496 | 0.451 | 1e-69 | |
| Q8IYB4 | 626 | PEX5-related protein OS=H | no | N/A | 0.159 | 0.498 | 0.430 | 2e-67 | |
| Q925N3 | 602 | PEX5-related protein OS=R | no | N/A | 0.157 | 0.513 | 0.432 | 6e-67 | |
| Q8C437 | 567 | PEX5-related protein OS=M | no | N/A | 0.157 | 0.544 | 0.429 | 2e-66 |
| >sp|Q5ZMQ9|PEX5_CHICK Peroxisomal targeting signal 1 receptor OS=Gallus gallus GN=PEX5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/342 (45%), Positives = 222/342 (64%), Gaps = 22/342 (6%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFAL 1611
W++L + W+EM + ++ H W +D+ SS Y F EDNPM++ +AF
Sbjct: 292 FWDKLQAEWEEMAKR----DAEAHPWLTDYDDLSSSSYDKG-YQFEEDNPMRDHPDAFEE 346
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G+++L +GDLP+A+L EAA +Q+PD+ E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 347 GRKRLEEGDLPNAVLLFEAAVQQKPDHMEAWQYLGTTQAENEQELLAISALRRCLELQPG 406
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS-AYKADALPSKLTRLANHTL 1730
NL ALMA+++ FTNE+ A +TL+D + + +P+ A+ + P + N
Sbjct: 407 NLTALMALAVSFTNESLQKQACETLRDWL------HHKPAYAHLLEKAPEENASETNLGT 460
Query: 1731 TFR--SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ R L S + +V L+L A R PS ++DPDVQ GLGVLFNLS EY+KAVDCF +
Sbjct: 461 SKRVLGSLLSDSLFVEVKELFLAAVRSNPS-TVDPDVQCGLGVLFNLSGEYEKAVDCFSA 519
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
AL VRP+D LWN+LGA+LANGNR EEAV AY AL+L PG++R+RYNLGI+C++LGA+
Sbjct: 520 ALSVRPNDHLLWNKLGATLANGNRSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 579
Query: 1849 QAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AVEHFL AL+ Q + P G + MSD+IW +LR
Sbjct: 580 EAVEHFLEALHMQQKSR---GPRGQQ----GAMSDNIWSTLR 614
|
Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Gallus gallus (taxid: 9031) |
| >sp|Q920N5|PEX5_CRIGR Peroxisomal targeting signal 1 receptor OS=Cricetulus griseus GN=PEX5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 215/349 (61%), Gaps = 37/349 (10%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD+ +S Y F E+NP+++ AF
Sbjct: 288 FWDKLQAELEEMAKR----DAEAHPWLSDYDDLTSASYDKG-YQFEEENPLRDHPQAFEE 342
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L +GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 343 GLRRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 402
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIR----------PGQESNPRPSAYKADALPSK 1721
N ALMA+++ FTNE+ A +TL+D +R PG+E A A PSK
Sbjct: 403 NRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVTPGEEG-----ASGAGLGPSK 457
Query: 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK 1781
R+ L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDK
Sbjct: 458 --RVLGSLL-------SDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDK 507
Query: 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841
AVDCF +AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C
Sbjct: 508 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 567
Query: 1842 VHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
++LGA+ +AVEHFL ALN Q + P G MS++IW +LR
Sbjct: 568 INLGAHREAVEHFLEALNMQRKSR---GPRG----EGGAMSENIWSTLR 609
|
Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Cricetulus griseus (taxid: 10029) |
| >sp|Q2M2R8|PEX5_RAT Peroxisomal targeting signal 1 receptor OS=Rattus norvegicus GN=Pex5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 157/349 (44%), Positives = 214/349 (61%), Gaps = 37/349 (10%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD+ +S Y F E+NP+++ F
Sbjct: 288 FWDKLQAELEEMAKR----DAEAHPWLSDYDDLTSASYDKG-YQFEEENPLRDHPQPFEE 342
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L +GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 343 GLRRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 402
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIR----------PGQESNPRPSAYKADALPSK 1721
N ALMA+++ FTNE+ A +TL+D +R PG+E A A PSK
Sbjct: 403 NRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVAPGEEG-----ASGAGLGPSK 457
Query: 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK 1781
R+ L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDK
Sbjct: 458 --RVLGSLL-------SDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDK 507
Query: 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841
AVDCF +AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C
Sbjct: 508 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 567
Query: 1842 VHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
++LGA+ +AVEHFL ALN Q + P G MS++IW +LR
Sbjct: 568 INLGAHREAVEHFLEALNMQRKSR---GPRG----EGGAMSENIWSTLR 609
|
Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Rattus norvegicus (taxid: 10116) |
| >sp|Q1RMV0|PEX5_BOVIN Peroxisomal targeting signal 1 receptor OS=Bos taurus GN=PEX5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/342 (45%), Positives = 213/342 (62%), Gaps = 23/342 (6%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHE-YTFAEDNPMQNETNAFA 1610
W++L + +EM + ++ H W SD + +S S + Y F E+NP+++ F
Sbjct: 288 FWDKLQAELEEMAKR----DAEAHPWLSD--HDDLTSASYDKGYHFEEENPLRDHPQPFE 341
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G +L++GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL KCL ++P
Sbjct: 342 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRKCLELKP 401
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADALPSKLTRLANH 1728
N ALMA+++ FTNE+ A +TL+D +R P P A + L +
Sbjct: 402 DNRTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVAPGEEGAGGVG-----LGSS 456
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
S LS + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +
Sbjct: 457 KRILGSLLSDS-LFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTA 514
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
AL VRPDD LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+
Sbjct: 515 ALSVRPDDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 574
Query: 1849 QAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AVEHFL ALN Q + P G MS++IW +LR
Sbjct: 575 EAVEHFLEALNMQRKSR---GPRG----EGGAMSENIWSTLR 609
|
Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Bos taurus (taxid: 9913) |
| >sp|O09012|PEX5_MOUSE Peroxisomal targeting signal 1 receptor OS=Mus musculus GN=Pex5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 213/349 (61%), Gaps = 39/349 (11%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD+ +S Y F E+NP+++ F
Sbjct: 289 FWDKLQAELEEMAKR----DAEAHPWLSDYDDLTSASYDKG-YQFEEENPLRDHPQPFEE 343
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L +GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 344 GLHRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 403
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIR----------PGQESNPRPSAYKADALPSK 1721
N ALMA+++ FTNE+ A +TL+D +R PG+E A PSK
Sbjct: 404 NRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVAPGEEG-------ATGAGPSK 456
Query: 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK 1781
R+ L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDK
Sbjct: 457 --RILGSLL-------SDSLFLEVKDLFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDK 506
Query: 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841
AVDCF +AL VRP+D +WN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C
Sbjct: 507 AVDCFTAALSVRPNDYLMWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 566
Query: 1842 VHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
++LGA+ +AVEHFL ALN Q + P G MS++IW +LR
Sbjct: 567 INLGAHREAVEHFLEALNMQRKSR---GPRG----EGGAMSENIWSTLR 608
|
Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Mus musculus (taxid: 10090) |
| >sp|P50542|PEX5_HUMAN Peroxisomal targeting signal 1 receptor OS=Homo sapiens GN=PEX5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 151/342 (44%), Positives = 211/342 (61%), Gaps = 23/342 (6%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD+ + S+ Y F E+NP+++ F
Sbjct: 287 FWDKLQAELEEMAKR----DAEAHPWLSDYD-DLTSATYDKGYQFEEENPLRDHPQPFEE 341
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L++GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 342 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 401
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLT 1731
N ALMA+++ FTNE+ A +TL+D +R AY P++
Sbjct: 402 NQTALMALAVSFTNESLQRQACETLRDWLR-------YTPAYAHLVTPAEEGAGGAGLGP 454
Query: 1732 FRSPLSS---REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +
Sbjct: 455 SKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTA 513
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+
Sbjct: 514 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 573
Query: 1849 QAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AVEHFL ALN Q + P G MS++IW +LR
Sbjct: 574 EAVEHFLEALNMQRKSR---GPRG----EGGAMSENIWSTLR 608
|
Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Homo sapiens (taxid: 9606) |
| >sp|O70525|PEX5_CAVPO Peroxisomal targeting signal 1 receptor OS=Cavia porcellus GN=PEX5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/343 (45%), Positives = 216/343 (62%), Gaps = 25/343 (7%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHE-YTFAEDNPMQNETNAFA 1610
W++L + +EM + ++ H W SD+ + +S S + Y F E+NP+++ F
Sbjct: 288 FWDKLQAELEEMAKR----DAEAHPWLSDY--DDLTSASYDKGYQFEEENPLRDHPQPFE 341
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G +L +GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 342 EGLLRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 401
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730
N ALMA+++ FTNE+ A +TL+D +R P AY P++
Sbjct: 402 DNRTALMALAVSFTNESLQRQACETLRDWLR----CTP---AYAHLVTPAEEGAGGAGLG 454
Query: 1731 TFRSPLSS---REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+ + L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF
Sbjct: 455 SSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFT 513
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
+AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+
Sbjct: 514 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 573
Query: 1848 TQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AVEHFL ALN Q + P G E A MS++IW +LR
Sbjct: 574 REAVEHFLEALNMQRKSR---GPRG-EGGA---MSENIWSTLR 609
|
Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Cavia porcellus (taxid: 10141) |
| >sp|Q8IYB4|PEX5R_HUMAN PEX5-related protein OS=Homo sapiens GN=PEX5L PE=1 SV=2 | Back alignment and function description |
|---|
Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/344 (43%), Positives = 210/344 (61%), Gaps = 32/344 (9%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRS---SVSMHEYTFAEDNPMQNETNA 1608
W+++ + W+EM W S+ Q S S Y F +NP ++ A
Sbjct: 279 FWDKMQAEWEEMAR---------RNWISENQEAQNQVTISASEKGYYFHTENPFKDWPGA 329
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
F G ++L++GDLP IL++EAA Q+P +AE W LGI+ AENE + AI AL +CL +
Sbjct: 330 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 389
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLAN 1727
+P NL+ALMA+++ +TN DA D LK+ I+ NP+ K+ LTR +
Sbjct: 390 QPNNLKALMALAVSYTNTGHQQDACDALKNWIK----QNPKYKYLVKSKKGSPGLTRRMS 445
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+SP+ S + + V LYL AA Q IDPD+Q GLGVLF+LS E+++A+D F
Sbjct: 446 -----KSPVDS-SVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 498
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
+AL VRP+D LWNRLGA+LANG+R EEAVEAY AL++ PGF+R+RYNLGI+C++LGA
Sbjct: 499 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 558
Query: 1848 TQAVEHFLTALN-QQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AV +FLTAL+ Q+ + + PH +S +IW +LR
Sbjct: 559 REAVSNFLTALSLQRKSRNQQQVPH-------PAISGNIWAALR 595
|
Homo sapiens (taxid: 9606) |
| >sp|Q925N3|PEX5R_RAT PEX5-related protein OS=Rattus norvegicus GN=Pex5l PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 150/347 (43%), Positives = 212/347 (61%), Gaps = 38/347 (10%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRS---SVSMHEYTFAEDNPMQNETNA 1608
W+++ + W+EM W S+ Q S S Y F +NP ++ A
Sbjct: 255 FWDKMQAEWEEMAR---------RNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGA 305
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
F G ++L++GDLP IL++EAA Q+P NAE W LGI+ AENE + AI AL +CL +
Sbjct: 306 FEEGLKRLKEGDLPVTILFMEAAILQDPGNAEAWQFLGITQAENENEQAAIVALQRCLEL 365
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK----LTR 1724
+P NL+ALMA+++ +TN + DA + LK+ I+ NP+ YK K LTR
Sbjct: 366 QPNNLKALMALAVSYTNTSHQQDACEALKNWIK----QNPK---YKYLVKNKKGSPGLTR 418
Query: 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVD 1784
+ +SP+ S + + V LYL AA Q IDPD+Q GLGVLF+LS E+++A+D
Sbjct: 419 RMS-----KSPVDS-SVLEGVKDLYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAID 471
Query: 1785 CFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844
F +AL VRP+D LWNRLGA+LANG+R EEAVEAY AL++ PGF+R+RYNLGI+C++L
Sbjct: 472 AFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 531
Query: 1845 GANTQAVEHFLTALN-QQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
GA +AV +FLTAL+ Q+ + + PH +S +IW +LR
Sbjct: 532 GAYREAVSNFLTALSLQRKSRNQQQVPH-------PAISGNIWAALR 571
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8C437|PEX5R_MOUSE PEX5-related protein OS=Mus musculus GN=Pex5l PE=1 SV=2 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 149/347 (42%), Positives = 212/347 (61%), Gaps = 38/347 (10%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRS---SVSMHEYTFAEDNPMQNETNA 1608
W+++ + W+EM W S+ Q S S Y F +NP ++ A
Sbjct: 220 FWDKMQAEWEEMAR---------RNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGA 270
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
F G ++L++GDLP IL++EAA Q+P +AE W LGI+ AENE + AI AL +CL +
Sbjct: 271 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 330
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK----LTR 1724
+P NL+ALMA+++ +TN + DA + LK+ I+ NP+ YK K LTR
Sbjct: 331 QPNNLKALMALAVSYTNTSHQQDACEALKNWIK----QNPK---YKYLVKNKKGSPGLTR 383
Query: 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVD 1784
+ +SP+ S + + V LYL AA Q IDPD+Q GLGVLF+LS E+++A+D
Sbjct: 384 RMS-----KSPVDS-SVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAID 436
Query: 1785 CFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844
F +AL VRP+D LWNRLGA+LANG+R EEAVEAY AL++ PGF+R+RYNLGI+C++L
Sbjct: 437 AFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 496
Query: 1845 GANTQAVEHFLTALN-QQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
GA +AV +FLTAL+ Q+ + + PH +S +IW +LR
Sbjct: 497 GAYREAVSNFLTALSLQRKSRNQQQVPH-------PAISGNIWAALR 536
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1956 | ||||||
| 260831930 | 635 | hypothetical protein BRAFLDRAFT_60314 [B | 0.160 | 0.492 | 0.485 | 6e-81 | |
| 260782341 | 564 | hypothetical protein BRAFLDRAFT_62718 [B | 0.160 | 0.554 | 0.485 | 7e-81 | |
| 242023516 | 527 | Peroxisomal targeting signal 1 receptor, | 0.157 | 0.586 | 0.479 | 7e-79 | |
| 307187596 | 621 | Peroxisomal targeting signal 1 receptor | 0.165 | 0.520 | 0.486 | 3e-78 | |
| 350426381 | 623 | PREDICTED: peroxisomal targeting signal | 0.162 | 0.510 | 0.495 | 1e-77 | |
| 383857697 | 622 | PREDICTED: peroxisomal targeting signal | 0.154 | 0.487 | 0.510 | 2e-77 | |
| 332024344 | 614 | Peroxisomal targeting signal 1 receptor | 0.169 | 0.539 | 0.482 | 2e-77 | |
| 340723680 | 623 | PREDICTED: peroxisomal targeting signal | 0.162 | 0.510 | 0.495 | 2e-77 | |
| 156402879 | 607 | predicted protein [Nematostella vectensi | 0.167 | 0.538 | 0.455 | 2e-77 | |
| 328777376 | 639 | PREDICTED: peroxisomal targeting signal | 0.159 | 0.488 | 0.489 | 3e-77 |
| >gi|260831930|ref|XP_002610911.1| hypothetical protein BRAFLDRAFT_60314 [Branchiostoma floridae] gi|229296280|gb|EEN66921.1| hypothetical protein BRAFLDRAFT_60314 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 310 bits (794), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 165/340 (48%), Positives = 221/340 (65%), Gaps = 27/340 (7%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFAL 1611
W++L W ++ + + H W SDF ++ EYTF EDNP+++ +AF
Sbjct: 288 FWDKLQEEWDQLAQ-----QDSAHPWLSDFDNVVDTN---REYTFEEDNPLKDHPDAFKE 339
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G E+L+QGDL +A+L EAA +++P++ E W LG S AENEQ+ AI+AL +CL ++P+
Sbjct: 340 GMERLKQGDLANAVLLFEAAVQKDPEHMEAWQYLGTSQAENEQEQHAISALKRCLELQPQ 399
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPG-QESNPRPSAYKADALPSKLTRLANHTL 1730
NL ALMA+++ +TNE+ A TLK + + SN P +A +K+
Sbjct: 400 NLTALMALAVSYTNESMQQQACQTLKSWLANSVKYSNLVPQGAEAAGATAKV-------- 451
Query: 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790
S + S E+H +V L++ AAR+ P +IDPDVQ GLGVLFNLS EYDKAVDCF +AL
Sbjct: 452 ---SSVMSSELHDEVRDLFIQAARRAPKDNIDPDVQCGLGVLFNLSGEYDKAVDCFNAAL 508
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
VRP+DS LWNRLGA+LANGNR EEA++AY ALQL PGFVR+RYNLGI+CV+LG +A
Sbjct: 509 AVRPEDSLLWNRLGATLANGNRSEEAIQAYRHALQLRPGFVRSRYNLGISCVNLGVYKEA 568
Query: 1851 VEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
VEHFLTALN Q A G P G MS++IW +LR
Sbjct: 569 VEHFLTALNMQRA---GKGPKG----EAALMSENIWSTLR 601
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|260782341|ref|XP_002586247.1| hypothetical protein BRAFLDRAFT_62718 [Branchiostoma floridae] gi|229271345|gb|EEN42258.1| hypothetical protein BRAFLDRAFT_62718 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 310 bits (793), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 165/340 (48%), Positives = 221/340 (65%), Gaps = 27/340 (7%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFAL 1611
W++L W ++ + + H W SDF ++ EYTF EDNP+++ +AF
Sbjct: 217 FWDKLQEEWDQLAQ-----QDSAHPWLSDFDNVVDTN---REYTFEEDNPLKDHPDAFKE 268
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G E+L+QGDL +A+L EAA +++P++ E W LG S AENEQ+ AI+AL +CL ++P+
Sbjct: 269 GMERLKQGDLANAVLLFEAAVQKDPEHMEAWQYLGTSQAENEQEQHAISALKRCLELQPQ 328
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPG-QESNPRPSAYKADALPSKLTRLANHTL 1730
NL ALMA+++ +TNE+ A TLK + + SN P +A +K+
Sbjct: 329 NLTALMALAVSYTNESMQQQACQTLKSWLANSVKYSNLVPQGAEAAGATAKV-------- 380
Query: 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790
S + S E+H +V L++ AAR+ P +IDPDVQ GLGVLFNLS EYDKAVDCF +AL
Sbjct: 381 ---SSVMSSELHDEVRDLFIQAARRAPKDNIDPDVQCGLGVLFNLSGEYDKAVDCFNAAL 437
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
VRP+DS LWNRLGA+LANGNR EEA++AY ALQL PGFVR+RYNLGI+CV+LG +A
Sbjct: 438 AVRPEDSLLWNRLGATLANGNRSEEAIQAYRHALQLRPGFVRSRYNLGISCVNLGVYKEA 497
Query: 1851 VEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
VEHFLTALN Q A G P G MS++IW +LR
Sbjct: 498 VEHFLTALNMQRA---GKGPKG----EAALMSENIWSTLR 530
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|242023516|ref|XP_002432178.1| Peroxisomal targeting signal 1 receptor, putative [Pediculus humanus corporis] gi|212517575|gb|EEB19440.1| Peroxisomal targeting signal 1 receptor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 303 bits (776), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 164/342 (47%), Positives = 218/342 (63%), Gaps = 33/342 (9%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQW---FSDFSRNQRSSVSMHEYTFAEDNPMQNETNA 1608
W +L W++M+E+ GS W ++DF EYTF +NPM+ N
Sbjct: 186 FWKKLQKEWEKMSEAEGS-----KSWEKEYADFID------PFKEYTFDAENPMKETENP 234
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
F G +KL + DLPSA+L EAAA+ +P+N VW LG + AENEQDP+AI+AL KC+S+
Sbjct: 235 FECGLKKLEENDLPSAVLCFEAAAQIDPENPLVWQYLGTTQAENEQDPRAISALKKCISL 294
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ NL ALM+++I +TNE + A LK + ++NP+ S D+ +
Sbjct: 295 QSDNLTALMSLAISYTNENYQNQACQMLKQWL----QNNPKYSDLVKDSSKGNYYNI--- 347
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
S L S IHQ+V +++ AA +CP+ ID DVQ GLGVLFNLS+E DKA DCF++
Sbjct: 348 -----SSLLSSNIHQEVKEMFIAAANKCPTGEIDVDVQCGLGVLFNLSNEIDKAADCFKA 402
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
ALQ RP D R+WNRLGA+LANG+R EEAV+AY+ AL LSPGF+RARYNLGITCV+LGAN
Sbjct: 403 ALQARPKDFRMWNRLGATLANGHRSEEAVDAYYNALHLSPGFIRARYNLGITCVNLGANR 462
Query: 1849 QAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+A EH LTALNQQA + G+ MS+SIW +L+
Sbjct: 463 EAAEHLLTALNQQAKGRNSQGDVGI-------MSESIWTTLK 497
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307187596|gb|EFN72600.1| Peroxisomal targeting signal 1 receptor [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 301 bits (770), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 166/341 (48%), Positives = 220/341 (64%), Gaps = 18/341 (5%)
Query: 1551 ALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFA 1610
+LW W +++ S H W S+F + EY F E NPM++ NA A
Sbjct: 268 SLWKRFQDEWDKVS---ADELSSTHPWVSEF--DTYYDPFNKEYEFCETNPMKDLPNALA 322
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G+++L GDLPSA+L EAA +Q+ +N E WL LG + AENEQDP AI+AL++CL +EP
Sbjct: 323 EGKKRLEAGDLPSAVLCFEAAVQQDENNVEAWLLLGKTQAENEQDPLAISALNRCLCLEP 382
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP-SKLTRLANHT 1729
N ALMA++ + NE+ A TLK+ + Q+ YK ++P S LT+
Sbjct: 383 SNSVALMALAASYANESYQKQACLTLKEWLLKNQK-------YKHLSIPESNLTKDKQQN 435
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
+ + L + ++ +V LY+ AAR P ID DVQ GLG+LFNLS +Y+KAVDCF++A
Sbjct: 436 FSVSTLLYDK-VYDEVKDLYIQAARMNPRDEIDADVQCGLGILFNLSSDYNKAVDCFQAA 494
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
LQVRPDDSRLWNRLGA+LANG R EAV AYH AL+LSPGF+RARYNLGI+CV+LG +
Sbjct: 495 LQVRPDDSRLWNRLGATLANGQRSAEAVNAYHRALELSPGFIRARYNLGISCVNLGVYKE 554
Query: 1850 AVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
A EH LTALNQQAA G + + P+A MS++IW +LR
Sbjct: 555 AGEHLLTALNQQAAGR-GPQANTVSPKA---MSNTIWSTLR 591
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350426381|ref|XP_003494421.1| PREDICTED: peroxisomal targeting signal 1 receptor-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 299 bits (765), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 167/337 (49%), Positives = 225/337 (66%), Gaps = 19/337 (5%)
Query: 1555 ELNSHWKEMTESLGSGE-SLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQ 1613
+L + W++++ SGE S H W S++ +Y F E+NPM+N NA G+
Sbjct: 275 KLQNEWEKIS---SSGELSSKHPWLSEYDTFYDP---FKDYEFHEENPMKNVPNALEEGK 328
Query: 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673
++L+ GDLPSAIL EAA +Q+ ++E WL LG + AENEQDP AI+AL CLS++P N
Sbjct: 329 KRLKDGDLPSAILCFEAAVQQDEKDSEAWLLLGKTQAENEQDPLAISALKHCLSLDPING 388
Query: 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFR 1733
ALMA+++ +TNE+ + A TLK+ + E S KA + P + ++ T+ F
Sbjct: 389 AALMALAVSYTNESYQNQACVTLKEWLLKN-EKYKHLSVRKASS-PEQQSKSNVSTILFD 446
Query: 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793
++H++V LY+ AAR P ID DVQ GLGVLFNLS+EYDKA DCF++ALQVR
Sbjct: 447 ------DVHEEVKDLYIQAARMNPWNEIDADVQCGLGVLFNLSNEYDKASDCFQAALQVR 500
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
PDDSRLWNRLGA+LANG + EEA+ AYH AL+LSPGF+RARYNLGI+C++L A +A EH
Sbjct: 501 PDDSRLWNRLGATLANGQKSEEAINAYHHALKLSPGFIRARYNLGISCINLAAYKEAGEH 560
Query: 1854 FLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+ ALNQQAA G HG E + K MS++IW +LR
Sbjct: 561 LVIALNQQAA---GRGVHG-ENSSPKAMSNTIWSTLR 593
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857697|ref|XP_003704340.1| PREDICTED: peroxisomal targeting signal 1 receptor-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 298 bits (764), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 163/319 (51%), Positives = 209/319 (65%), Gaps = 16/319 (5%)
Query: 1572 SLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAA 1631
S H W S++ +Y F E+NPM+N NA G+++L GDLPSAIL EAA
Sbjct: 290 SSKHPWLSEYDTFYDP---FKDYEFHEENPMKNLPNALEEGKKRLEAGDLPSAILCFEAA 346
Query: 1632 AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691
+Q+ N E WL LG + AENEQDP AI AL +CL I+P N ALMA+++ +TNE+ +
Sbjct: 347 VQQDEKNPEAWLLLGKTQAENEQDPLAIYALKRCLDIDPANGTALMALAVSYTNESYQNQ 406
Query: 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751
A LK+ + R YK L ++ T T S + ++H++V +LY+
Sbjct: 407 ACIILKEWLL-------RNEKYKH--LSTRKTNTEPQTKFNVSSILFDDVHEEVKNLYIQ 457
Query: 1752 AARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811
AAR P IDPDVQ GLGVLFNLS+EYDKA DCF++ALQVRPDDSRLWNRLGA+LANG
Sbjct: 458 AARINPLNEIDPDVQCGLGVLFNLSNEYDKACDCFQAALQVRPDDSRLWNRLGATLANGQ 517
Query: 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871
+ EEA+ AYH AL+LSPGF+RARYNLGI+C++LGA +A EH L ALNQQAA G+
Sbjct: 518 KSEEAINAYHHALRLSPGFIRARYNLGISCINLGAYKEAGEHLLIALNQQAAGR-GMQGE 576
Query: 1872 GLEPRAVKEMSDSIWYSLR 1890
P+A MS+ IW +LR
Sbjct: 577 NFSPKA---MSNIIWSTLR 592
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332024344|gb|EGI64543.1| Peroxisomal targeting signal 1 receptor [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 298 bits (764), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 168/348 (48%), Positives = 218/348 (62%), Gaps = 17/348 (4%)
Query: 1547 KPEPALWNELNSHWKEMTESL----GSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPM 1602
K P N + S WK E G S H W S+F + EY F+E NPM
Sbjct: 250 KENPVAGNNMESLWKRFQEEWDKISADGNSYTHPWVSEF--DTYYDPFNKEYDFSETNPM 307
Query: 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAAL 1662
++ NA A G+++L GDLPSA+L EAA +Q+ +N E WL LG + AENEQDP AI+AL
Sbjct: 308 KDLPNALAEGKKRLEAGDLPSAVLCFEAAVQQDENNIEAWLLLGKTQAENEQDPLAISAL 367
Query: 1663 SKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKL 1722
++CL ++P N ALM ++ + NE+ A TLK+ + ++ YK A
Sbjct: 368 NRCLCLDPSNSVALMTLAASYANESYQKQACLTLKEWLLKNEK-------YKHLASSESN 420
Query: 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782
+ H S L +I+ +V LY+ AAR P ID DVQ GLG+LFNLS++Y+KA
Sbjct: 421 IKKDEHPNFNVSTLLYDKIYDEVKDLYIQAARMNPRDEIDADVQCGLGILFNLSNDYNKA 480
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842
VDCF++AL VRPDDSRLWNRLGA+LANG R EEAV AYH AL+LSPGF+RARYNLGI+CV
Sbjct: 481 VDCFQTALHVRPDDSRLWNRLGATLANGQRSEEAVNAYHRALELSPGFIRARYNLGISCV 540
Query: 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+L A +A EH LTALNQQAA G + + P+A MS++IW +LR
Sbjct: 541 NLAAYQEAGEHLLTALNQQAAGR-GPQANSVPPKA---MSNTIWSTLR 584
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340723680|ref|XP_003400217.1| PREDICTED: peroxisomal targeting signal 1 receptor-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 298 bits (763), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 167/337 (49%), Positives = 224/337 (66%), Gaps = 19/337 (5%)
Query: 1555 ELNSHWKEMTESLGSGE-SLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQ 1613
+L + W++++ SGE S H W S++ +Y F E+NPM+N NA G+
Sbjct: 275 KLQNEWEKIS---SSGELSSKHPWLSEYDTFYDP---FKDYEFHEENPMKNVPNALEEGK 328
Query: 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673
++L GDLPSAIL EAA +Q ++E WL LG + AENEQDP AI+AL +CLS++P N
Sbjct: 329 KRLEAGDLPSAILCFEAAVQQNEKDSEAWLLLGKTQAENEQDPLAISALKRCLSLDPING 388
Query: 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFR 1733
ALMA+++ +TNE+ + A TLK+ + E S KA + P + ++ T+ F
Sbjct: 389 AALMALAVSYTNESYQNQACVTLKEWLLKN-EKYKHLSVRKASS-PEQQSKSNVSTILFD 446
Query: 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793
++H++V LY+ AAR P ID DVQ GLGVLFNLS+EYDKA DCF++ALQVR
Sbjct: 447 ------DVHEEVKDLYIQAARMNPWNEIDADVQCGLGVLFNLSNEYDKASDCFQAALQVR 500
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
PDDSRLWNRLGA+LANG + EEA+ AYH AL+LSPGF+RARYNLGI+C++L A +A EH
Sbjct: 501 PDDSRLWNRLGATLANGQKSEEAINAYHHALKLSPGFIRARYNLGISCINLAAYKEAGEH 560
Query: 1854 FLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+ ALNQQAA G HG E + K MS++IW +LR
Sbjct: 561 LVIALNQQAA---GRGVHG-EKFSPKAMSNTIWSTLR 593
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156402879|ref|XP_001639817.1| predicted protein [Nematostella vectensis] gi|156226948|gb|EDO47754.1| predicted protein [Nematostella vectensis] | Back alignment and taxonomy information |
|---|
Score = 298 bits (763), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 217/349 (62%), Gaps = 22/349 (6%)
Query: 1542 SGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNP 1601
+G + + W+ L W+ + G H WF+D+ + EY F EDNP
Sbjct: 243 AGASSREDVDFWDNLQGEWESLVRQDGDE---AHSWFTDYEEE-----TNKEYKFEEDNP 294
Query: 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAA 1661
+ + N F G +KL++GDL SAIL EA +Q P++AE W LG S AENEQD AI+A
Sbjct: 295 LLDHPNPFEEGLKKLKEGDLISAILLFEAEVRQNPEHAEAWQYLGTSQAENEQDIAAISA 354
Query: 1662 LSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK 1721
L++C+ ++P NLEALMA+++ TNE+ A TLKD +R NPR YK D +P
Sbjct: 355 LNRCVDLQPGNLEALMALAVSLTNESMQSQACKTLKDWLR----DNPR---YK-DIVPPS 406
Query: 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK 1781
+ S + + +++ ++ +Y+ AA++ P +D +VQ GLGVLFNLS EYDK
Sbjct: 407 DDQAGQRPRPITSSIMTSDMYNEIRDMYIAAAQRAPENDLDANVQVGLGVLFNLSGEYDK 466
Query: 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841
AVDCF++A+ RP+D+ LWNRLGA+LANG R EEAV+AY AL SPGF+R RYNLGI+C
Sbjct: 467 AVDCFQAAVIARPEDALLWNRLGATLANGGRSEEAVDAYRHALSYSPGFIRCRYNLGISC 526
Query: 1842 VHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
++L A+ QAVEHFLTALN Q G+ G V MSD+IW +LR
Sbjct: 527 INLSAHQQAVEHFLTALNMQ--RKGGVGSDG----TVTTMSDNIWSTLR 569
|
Source: Nematostella vectensis Species: Nematostella vectensis Genus: Nematostella Family: Edwardsiidae Order: Actiniaria Class: Anthozoa Phylum: Cnidaria Superkingdom: Eukaryota |
| >gi|328777376|ref|XP_397319.4| PREDICTED: peroxisomal targeting signal 1 receptor-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 298 bits (762), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 166/339 (48%), Positives = 224/339 (66%), Gaps = 27/339 (7%)
Query: 1555 ELNSHWKEMT-ESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQ 1613
+L + W +++ E L S H W S++ + EY F E+NPM+N NA G+
Sbjct: 295 KLQNEWDKISSEELSS----KHPWLSEYDK---FYDPFKEYEFHEENPMKNLPNALKEGK 347
Query: 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673
++L GDLPSAIL EAA +Q+ +N+E WL LG +LAENEQDP AI+AL +CL+++P N
Sbjct: 348 KRLEAGDLPSAILCFEAAVQQDENNSEAWLLLGKTLAENEQDPLAISALKRCLNLDPSNG 407
Query: 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLAN--HTLT 1731
ALMA+++ +TNE+ + A TLK+ + ++ YK L ++ N H +
Sbjct: 408 PALMALAVSYTNESYQNQACITLKEWLLKNEK-------YK------HLQKINNEQHIKS 454
Query: 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791
S + ++H++V +LY+ AAR P ID DVQ GLGVLFNLS+EYDKA DCF++ALQ
Sbjct: 455 NISSILFEDVHEEVKNLYIQAARMNPWNEIDADVQCGLGVLFNLSNEYDKASDCFQAALQ 514
Query: 1792 VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851
VRP DSRLWNRLGA+LANG + EEAV AYH AL+LSPGF+RARYNLGI+C++LGA +A
Sbjct: 515 VRPHDSRLWNRLGATLANGQKSEEAVTAYHHALKLSPGFIRARYNLGISCINLGAFKEAG 574
Query: 1852 EHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
EH + ALNQQAA G+ P K MS+ IW +LR
Sbjct: 575 EHLIIALNQQAAGR-GIQGENFPP---KTMSNIIWSTLR 609
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1956 | ||||||
| UNIPROTKB|Q1RMV0 | 640 | PEX5 "Peroxisomal targeting si | 0.162 | 0.496 | 0.463 | 5.9e-89 | |
| UNIPROTKB|I3LKI4 | 646 | PEX5 "Uncharacterized protein" | 0.163 | 0.495 | 0.467 | 1.2e-88 | |
| UNIPROTKB|Q920N5 | 640 | PEX5 "Peroxisomal targeting si | 0.161 | 0.492 | 0.462 | 2.6e-88 | |
| UNIPROTKB|B4E0T2 | 660 | PEX5 "Peroxisomal targeting si | 0.161 | 0.478 | 0.457 | 2.6e-88 | |
| UNIPROTKB|P50542 | 639 | PEX5 "Peroxisomal targeting si | 0.161 | 0.494 | 0.457 | 2.6e-88 | |
| UNIPROTKB|O70525 | 640 | PEX5 "Peroxisomal targeting si | 0.162 | 0.496 | 0.457 | 5.4e-88 | |
| MGI|MGI:1098808 | 639 | Pex5 "peroxisomal biogenesis f | 0.161 | 0.492 | 0.461 | 1.1e-87 | |
| UNIPROTKB|E2RND5 | 640 | PEX5 "Uncharacterized protein" | 0.161 | 0.492 | 0.459 | 1.4e-87 | |
| RGD|1307612 | 640 | Pex5 "peroxisomal biogenesis f | 0.161 | 0.492 | 0.459 | 1.8e-87 | |
| UNIPROTKB|Q5ZMQ9 | 645 | PEX5 "Peroxisomal targeting si | 0.163 | 0.494 | 0.463 | 5.4e-85 |
| UNIPROTKB|Q1RMV0 PEX5 "Peroxisomal targeting signal 1 receptor" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 5.9e-89, Sum P(2) = 5.9e-89
Identities = 158/341 (46%), Positives = 215/341 (63%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHE-YTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD + +S S + Y F E+NP+++ F
Sbjct: 289 WDKLQAELEEMAKR----DAEAHPWLSD--HDDLTSASYDKGYHFEEENPLRDHPQPFEE 342
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L++GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL KCL ++P
Sbjct: 343 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRKCLELKPD 402
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADALPSKLTRLANHT 1729
N ALMA+++ FTNE+ A +TL+D +R P P A + L +
Sbjct: 403 NRTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVAPGEEGAGGVG-----LGSSK 457
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
S LS + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +A
Sbjct: 458 RILGSLLSD-SLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 515
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
L VRPDD LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+ +
Sbjct: 516 LSVRPDDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE 575
Query: 1850 AVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
AVEHFL ALN Q + P G E A MS++IW +LR
Sbjct: 576 AVEHFLEALNMQRKSRG---PRG-EGGA---MSENIWSTLR 609
|
|
| UNIPROTKB|I3LKI4 PEX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 1.2e-88, Sum P(2) = 1.2e-88
Identities = 159/340 (46%), Positives = 215/340 (63%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHE-YTFAEDNPMQNETNAFAL 1611
W++L + +EM + E+ H W SD+ + SS S + Y F E+NP+++ AF
Sbjct: 294 WDKLQAELEEMAKR--DAEA--HPWLSDY--DDLSSASYDKGYHFEEENPLRDHPQAFEE 347
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSK-CLSIEP 1670
G +LR+GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL K CL ++P
Sbjct: 348 GLRRLREGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRKRCLELKP 407
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730
N ALMA+++ FTNE+ A +TL+D +R P + A H+
Sbjct: 408 DNRTALMALAVSFTNESLQRQACETLRDWLR----YTPAYAHLVVPAEEGAGGAGLGHSK 463
Query: 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +AL
Sbjct: 464 RILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 522
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+ +A
Sbjct: 523 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 582
Query: 1851 VEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
VEHFL ALN Q + P G E A MS++IW +LR
Sbjct: 583 VEHFLEALNMQRKSRG---PRG-EGGA---MSENIWSTLR 615
|
|
| UNIPROTKB|Q920N5 PEX5 "Peroxisomal targeting signal 1 receptor" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.6e-88, Sum P(2) = 2.6e-88
Identities = 159/344 (46%), Positives = 217/344 (63%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHE-YTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD+ + +S S + Y F E+NP+++ AF
Sbjct: 289 WDKLQAELEEMAKR----DAEAHPWLSDY--DDLTSASYDKGYQFEEENPLRDHPQAFEE 342
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L +GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 343 GLRRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 402
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADAL---PSKLTRLA 1726
N ALMA+++ FTNE+ A +TL+D +R P P A PSK R+
Sbjct: 403 NRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVTPGEEGASGAGLGPSK--RVL 460
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF
Sbjct: 461 GSLL-------SDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCF 512
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
+AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA
Sbjct: 513 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 572
Query: 1847 NTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+ +AVEHFL ALN Q + P G E A MS++IW +LR
Sbjct: 573 HREAVEHFLEALNMQRKSRG---PRG-EGGA---MSENIWSTLR 609
|
|
| UNIPROTKB|B4E0T2 PEX5 "Peroxisomal targeting signal 1 receptor" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 2.6e-88, Sum P(2) = 2.6e-88
Identities = 157/343 (45%), Positives = 216/343 (62%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALG 1612
W++L + +EM + ++ H W SD+ + S+ Y F E+NP+++ F G
Sbjct: 309 WDKLQAELEEMAKR----DAEAHPWLSDYD-DLTSATYDKGYQFEEENPLRDHPQPFEEG 363
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
+L++GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P N
Sbjct: 364 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 423
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADAL---PSKLTRLAN 1727
ALMA+++ FTNE+ A +TL+D +R P P+ A PSK R+
Sbjct: 424 QTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK--RILG 481
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF
Sbjct: 482 SLL-------SDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFT 533
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
+AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+
Sbjct: 534 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 593
Query: 1848 TQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AVEHFL ALN Q + P G E A MS++IW +LR
Sbjct: 594 REAVEHFLEALNMQRKSRG---PRG-EGGA---MSENIWSTLR 629
|
|
| UNIPROTKB|P50542 PEX5 "Peroxisomal targeting signal 1 receptor" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 2.6e-88, Sum P(2) = 2.6e-88
Identities = 157/343 (45%), Positives = 216/343 (62%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALG 1612
W++L + +EM + ++ H W SD+ + S+ Y F E+NP+++ F G
Sbjct: 288 WDKLQAELEEMAKR----DAEAHPWLSDYD-DLTSATYDKGYQFEEENPLRDHPQPFEEG 342
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
+L++GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P N
Sbjct: 343 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 402
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADAL---PSKLTRLAN 1727
ALMA+++ FTNE+ A +TL+D +R P P+ A PSK R+
Sbjct: 403 QTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK--RILG 460
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF
Sbjct: 461 SLL-------SDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFT 512
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
+AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+
Sbjct: 513 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 572
Query: 1848 TQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AVEHFL ALN Q + P G E A MS++IW +LR
Sbjct: 573 REAVEHFLEALNMQRKSRG---PRG-EGGA---MSENIWSTLR 608
|
|
| UNIPROTKB|O70525 PEX5 "Peroxisomal targeting signal 1 receptor" [Cavia porcellus (taxid:10141)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 5.4e-88, Sum P(2) = 5.4e-88
Identities = 156/341 (45%), Positives = 215/341 (63%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHE-YTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD+ + +S S + Y F E+NP+++ F
Sbjct: 289 WDKLQAELEEMAKR----DAEAHPWLSDY--DDLTSASYDKGYQFEEENPLRDHPQPFEE 342
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L +GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 343 GLLRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 402
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADALPSKLTRLANHT 1729
N ALMA+++ FTNE+ A +TL+D +R P P+ A L +
Sbjct: 403 NRTALMALAVSFTNESLQRQACETLRDWLRCTPAYAHLVTPAEEGAGG-----AGLGSSK 457
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
S LS + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +A
Sbjct: 458 RILGSLLSD-SLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 515
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
L VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+ +
Sbjct: 516 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE 575
Query: 1850 AVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
AVEHFL ALN Q + P G E A MS++IW +LR
Sbjct: 576 AVEHFLEALNMQRKSRG---PRG-EGGA---MSENIWSTLR 609
|
|
| MGI|MGI:1098808 Pex5 "peroxisomal biogenesis factor 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 1.1e-87, Sum P(2) = 1.1e-87
Identities = 158/342 (46%), Positives = 217/342 (63%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHE-YTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD+ + +S S + Y F E+NP+++ F
Sbjct: 290 WDKLQAELEEMAKR----DAEAHPWLSDY--DDLTSASYDKGYQFEEENPLRDHPQPFEE 343
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L +GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 344 GLHRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 403
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKAD-ALPSKLTRLANH 1728
N ALMA+++ FTNE+ A +TL+D +R P P A A PSK R+
Sbjct: 404 NRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVAPGEEGATGAGPSK--RILGS 461
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +
Sbjct: 462 LL-------SDSLFLEVKDLFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTA 513
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
AL VRP+D +WN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+
Sbjct: 514 ALSVRPNDYLMWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 573
Query: 1849 QAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AVEHFL ALN Q + P G E A MS++IW +LR
Sbjct: 574 EAVEHFLEALNMQRKSRG---PRG-EGGA---MSENIWSTLR 608
|
|
| UNIPROTKB|E2RND5 PEX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 1.4e-87, Sum P(2) = 1.4e-87
Identities = 158/344 (45%), Positives = 216/344 (62%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHE-YTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD+ + +S S + Y F E+NP+++ F
Sbjct: 289 WDKLQAELEEMAKR----DAEAHPWLSDY--DDLTSASYDKGYQFEEENPLRDHPQPFEE 342
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L++GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL KCL ++P
Sbjct: 343 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRKCLELKPD 402
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIR--PGQES---NPRPSAYKADALPSKLTRLA 1726
N ALMA+++ FTNE+ A +TL+D +R P A PSK R+
Sbjct: 403 NRTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVVRGEEGAGGPGQGPSK--RIL 460
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF
Sbjct: 461 GSLL-------SDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCF 512
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
+AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA
Sbjct: 513 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 572
Query: 1847 NTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+ +AVEHFL ALN Q + P G E A MS++IW +LR
Sbjct: 573 HREAVEHFLEALNMQRKSRG---PRG-EGGA---MSENIWSTLR 609
|
|
| RGD|1307612 Pex5 "peroxisomal biogenesis factor 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 1.8e-87, Sum P(2) = 1.8e-87
Identities = 158/344 (45%), Positives = 216/344 (62%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHE-YTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD+ + +S S + Y F E+NP+++ F
Sbjct: 289 WDKLQAELEEMAKR----DAEAHPWLSDY--DDLTSASYDKGYQFEEENPLRDHPQPFEE 342
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L +GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 343 GLRRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 402
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADAL---PSKLTRLA 1726
N ALMA+++ FTNE+ A +TL+D +R P P A PSK R+
Sbjct: 403 NRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVAPGEEGASGAGLGPSK--RVL 460
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF
Sbjct: 461 GSLL-------SDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCF 512
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
+AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA
Sbjct: 513 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 572
Query: 1847 NTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+ +AVEHFL ALN Q + P G E A MS++IW +LR
Sbjct: 573 HREAVEHFLEALNMQRKSRG---PRG-EGGA---MSENIWSTLR 609
|
|
| UNIPROTKB|Q5ZMQ9 PEX5 "Peroxisomal targeting signal 1 receptor" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 5.4e-85, Sum P(2) = 5.4e-85
Identities = 158/341 (46%), Positives = 222/341 (65%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALG 1612
W++L + W+EM + E+ H W +D+ SS Y F EDNPM++ +AF G
Sbjct: 293 WDKLQAEWEEMAKR--DAEA--HPWLTDYDDLSSSSYDKG-YQFEEDNPMRDHPDAFEEG 347
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
+++L +GDLP+A+L EAA +Q+PD+ E W LG + AENEQ+ AI+AL +CL ++P N
Sbjct: 348 RKRLEEGDLPNAVLLFEAAVQQKPDHMEAWQYLGTTQAENEQELLAISALRRCLELQPGN 407
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS-AYKADALPSKLTRLANHTLT 1731
L ALMA+++ FTNE+ A +TL+D + + +P+ A+ + P + N +
Sbjct: 408 LTALMALAVSFTNESLQKQACETLRDWL------HHKPAYAHLLEKAPEENASETNLGTS 461
Query: 1732 FR--SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
R L S + +V L+L A R PS ++DPDVQ GLGVLFNLS EY+KAVDCF +A
Sbjct: 462 KRVLGSLLSDSLFVEVKELFLAAVRSNPS-TVDPDVQCGLGVLFNLSGEYEKAVDCFSAA 520
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
L VRP+D LWN+LGA+LANGNR EEAV AY AL+L PG++R+RYNLGI+C++LGA+ +
Sbjct: 521 LSVRPNDHLLWNKLGATLANGNRSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE 580
Query: 1850 AVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
AVEHFL AL+ Q + P G + MSD+IW +LR
Sbjct: 581 AVEHFLEALHMQQKSRG---PRGQQGA----MSDNIWSTLR 614
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1956 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-19 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-12 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-12 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-12 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-10 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-09 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 4e-09 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-08 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-08 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 8e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-06 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-06 | |
| smart00386 | 33 | smart00386, HAT, HAT (Half-A-TPR) repeats | 2e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 2e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 4e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 5e-04 | |
| pfam02184 | 32 | pfam02184, HAT, HAT (Half-A-TPR) repeat | 5e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 9e-04 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 0.001 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 0.001 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.001 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.001 | |
| smart00386 | 33 | smart00386, HAT, HAT (Half-A-TPR) repeats | 0.002 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.002 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.004 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.004 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.004 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 8e-19
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826
LG L+ +YD+A++ + AL++ PD++ + L A+ + EEA+E Y AL+L
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63
Query: 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
P +A YNLG+ LG +A+E + AL
Sbjct: 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-13
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795
+ + L Y A P + D L + +Y++A++ + AL++ PD
Sbjct: 10 YYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66
Query: 1796 DSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
+++ + LG + + EEA+EAY AL+L P
Sbjct: 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-12
Identities = 21/89 (23%), Positives = 42/89 (47%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
LG + GD A+ Y E A + +PDNA+ + +L + + + +A+ K L +
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLK 1697
+P N +A + + + +AL+ +
Sbjct: 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYE 92
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-12
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN-GNRPEEAVEAY 1820
+ + LG +YD+A++ + AL++ PD++ + L + G EEA+E
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 1821 HTALQLSP 1828
AL+L P
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.3 bits (165), Expect = 7e-12
Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 21/254 (8%)
Query: 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE-- 1635
+ ++ + E L L+ G L A+ LE A + E
Sbjct: 32 LLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL 91
Query: 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI-CFTNEACLHDALD 1694
P+ AE L+LG+ L + +A+ L K L+++P A +++ +AL+
Sbjct: 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE 151
Query: 1695 TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754
+ KA L +L LA L + L + +++ L L A +
Sbjct: 152 LYE----------------KALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195
Query: 1755 QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPE 1814
P D + LG+L+ +Y++A++ + AL++ PD++ L L R E
Sbjct: 196 LNPD--DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253
Query: 1815 EAVEAYHTALQLSP 1828
EA+EA AL+L P
Sbjct: 254 EALEALEKALELDP 267
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-10
Identities = 69/299 (23%), Positives = 109/299 (36%), Gaps = 50/299 (16%)
Query: 1584 NQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWL 1643
N+ +V+ E + Q A AL Q L +G L A+ L AA PD+ E WL
Sbjct: 548 NEEEAVAWLEKAAELNP--QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605
Query: 1644 SLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPG 1703
LG + +A+++ K L+++P + AL L DA +K+
Sbjct: 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL----------LLLADAYAVMKN----- 650
Query: 1704 QESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL-SLYLNAARQCPSQSID 1762
A +L L ++T Q L L L A R ++ I
Sbjct: 651 -------YAKAITSLKRALELKPDNTEA-----------QIGLAQLLLAAKRTESAKKIA 692
Query: 1763 PDVQNG----------LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812
+Q G L+ +Y A+ +R AL+ P A LA+GN
Sbjct: 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752
Query: 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ---AATHDGL 1868
EAV+ L+ P R L + +A++H+ T + + A + L
Sbjct: 753 A-EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNL 810
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-09
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE-NEQDPQAIAA 1661
N LG + GD AI E A + +PDNAE + +L ++ + + +A+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 1662 LSKCLSIEP 1670
L K L ++P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-09
Identities = 59/273 (21%), Positives = 92/273 (33%), Gaps = 43/273 (15%)
Query: 1603 QNETNAFAL---GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGIS-LAENEQDPQA 1658
+ + AL G+ L GD A YL A + +P+NA LGIS L++ + +A
Sbjct: 358 LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS-EA 416
Query: 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718
IA L ++P+ A + + + + AL K K+ Q N
Sbjct: 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK-KLEKKQPDNASLHNLLGAIY 475
Query: 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-- 1776
L ++ + + A SI+PD NL+
Sbjct: 476 -----------------LGKGDLAKAREA--FEKAL-----SIEPD---FFPAAANLARI 508
Query: 1777 ----DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832
D A+ F L + P + R L EEAV A +L+P +
Sbjct: 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE 568
Query: 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865
L + G +A L LN+ A
Sbjct: 569 PALALAQYYLGKGQLKKA----LAILNEAADAA 597
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-09
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
AL + LR GD A+ LEAA + P AE L LG +L + +A A L L+
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 1669 EPKN 1672
+P +
Sbjct: 61 DPDD 64
|
Length = 65 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (135), Expect = 3e-08
Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 12/178 (6%)
Query: 718 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLD 777
L A + LG L+ L +Y++A++ + AL++ P+ EL L +
Sbjct: 117 LLEKALALDPDPDLAEALLALGALYEL-GDYEEALELYEKALELDPELNELAEALLALGA 175
Query: 778 FQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYE 837
+ + +E + KA + N + + + + A YE
Sbjct: 176 LL---EALGRYEEALEL---LEKALKLNPDDDAEA---LLNLGLLYLKLGKYEEALEYYE 226
Query: 838 RALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQF--WYKYTYMEEM 893
+AL++D N L + + A ++A+ + P E +
Sbjct: 227 KALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEAL 284
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 8e-08
Identities = 56/250 (22%), Positives = 91/250 (36%), Gaps = 28/250 (11%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
+ ++ + A L+ A K P+ L G S + QA L++ L
Sbjct: 264 HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILK 323
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAY-------------- 1713
P + +A ++ + +A+ TL + +P A
Sbjct: 324 YAPNSHQARRLLASIQLRLGRVDEAIATLSPAL----GLDPDDPAALSLLGEAYLALGDF 379
Query: 1714 -KADALPSKLTRL-----ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQN 1767
KA +K T L A T S LS + + + L A Q + D+
Sbjct: 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL--ETAAQLDPELGRADLLL 437
Query: 1768 GLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS 1827
L L S ++DKA+ + + +PD++ L N LGA +A EA+ AL +
Sbjct: 438 ILSYL--RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495
Query: 1828 PGFVRARYNL 1837
P F A NL
Sbjct: 496 PDFFPAAANL 505
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 1762 DPDVQNGLGV-LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY 1820
D ++ G + + +AV R A ++ P D WN LGA+L R +EA AY
Sbjct: 99 DRELLAAQGKNQIRNGN-FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAY 157
Query: 1821 HTALQLSPGFVRARYNLGI 1839
AL+L+P NLG+
Sbjct: 158 RQALELAPNEPSIANNLGM 176
|
Length = 257 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN-TQAVEH 1853
D++ LG +L +EA+EAY AL+L P A YNL + + LG + +A+E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 1854 FLTALN 1859
AL
Sbjct: 61 LEKALE 66
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-07
Identities = 53/259 (20%), Positives = 88/259 (33%), Gaps = 32/259 (12%)
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--E 1669
+ L++ +AI+ L+ A +++P++AE LG A L K LS+
Sbjct: 29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP 88
Query: 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT 1729
+ L+A + + LD L PG+ A + L
Sbjct: 89 KNQVLPLLARAYLLQGKF--QQVLDEL-----PGKTLLDDEGAAEL------LALRGLAY 135
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP---DVQNGLGVLFNLSDEYDKAVDCF 1786
L ++ Y A +IDP + GL L + +D+A
Sbjct: 136 LGLGQLELAQ-------KSYEQA------LAIDPRSLYAKLGLAQLALAENRFDEARALI 182
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
L P + G L + E A+ AY A+ L P + L + G
Sbjct: 183 DEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242
Query: 1847 NTQAVEHFLTALNQQAATH 1865
+A +H AL ++A
Sbjct: 243 FEEAEKH-ADALLKKAPNS 260
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 8e-07
Identities = 61/274 (22%), Positives = 101/274 (36%), Gaps = 36/274 (13%)
Query: 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669
LG+ +L GDL A+ + +PD+A L L + A + +AI +L + L ++
Sbjct: 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665
Query: 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRL---- 1725
P N EA + ++ A K Q+ +P KA L
Sbjct: 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSL----QKQHP-----KAALGFELEGDLYLRQ 716
Query: 1726 --------ANHTLTFRSPLSSREIHQQVLSLYLNAARQCP--------SQSIDPD---VQ 1766
A R+P S I L L A+ P+ ++
Sbjct: 717 KDYPAAIQAYRKALKRAPSSQNAIK---LHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826
L L+ +YDKA+ +++ ++ PD++ + N L P A+E AL+L
Sbjct: 774 TALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-RALEYAERALKL 832
Query: 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
+P LG V G +A+ A+N
Sbjct: 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
LG +EA+E Y AL+L P A YNL LG +A+E + AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 1859 NQ 1860
Sbjct: 62 EL 63
|
Length = 100 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
+YD+A+ +AL P + LG +L R EA AL P
Sbjct: 12 DYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPD 63
|
Length = 65 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-06
Identities = 65/277 (23%), Positives = 95/277 (34%), Gaps = 40/277 (14%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
L Q L + A ++ +P N + L G L A+AA K +++
Sbjct: 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222
Query: 1669 EPKN-----LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS--- 1720
P N A + I EA H D L K P P A+ AL
Sbjct: 223 RPNNIAVLLALATILIEAGEFEEAEKH--ADALL-KKAPNS-----PLAHYLKALVDFQK 274
Query: 1721 -----------KLTRLANHTLTFRSPLSSREIHQQVLSL---YLNAARQCPSQSIDPDVQ 1766
+ A L + E L YLN + P+
Sbjct: 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILK-----YAPNSH 329
Query: 1767 NGLGVLFNL---SDEYDKAVDCFRSALQVRPDDSRLWNRLG-ASLANGNRPEEAVEAYHT 1822
+L ++ D+A+ AL + PDD + LG A LA G+ E+A E
Sbjct: 330 QARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD-FEKAAEYLAK 388
Query: 1823 ALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
A +L P AR LGI+ + G ++A+ TA
Sbjct: 389 ATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ 425
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-06
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 827 KQVDRARSIYERALDVDHRNITLWLKYTELEMR 859
++RAR IYERAL+ +++ LWLKY E E R
Sbjct: 1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-05
Identities = 56/218 (25%), Positives = 86/218 (39%), Gaps = 32/218 (14%)
Query: 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLG-ISLAENEQDPQAIAALSKCLSIEPKNLE 1674
LR G A+ + K++PDNA + LG I L + + +A A K LSIEP
Sbjct: 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLA-KAREAFEKALSIEPDFFP 500
Query: 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH--TLTF 1732
A N A + QE NP + + + + LT + +
Sbjct: 501 AA-------ANLARIDI------------QEGNPDDAIQRFEKV---LTIDPKNLRAILA 538
Query: 1733 RSPLSSREIH-QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791
+ L R + ++ ++ AA P Q I+P + L + + KA+ A
Sbjct: 539 LAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALA--LAQYYLGKGQLKKALAILNEAAD 595
Query: 1792 VRPDDSRLWNRLG-ASLANGNRPEEAVEAYHTALQLSP 1828
PD W LG A LA G+ +AV ++ L L P
Sbjct: 596 AAPDSPEAWLMLGRAQLAAGDL-NKAVSSFKKLLALQP 632
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ L + G A+ E A + +PDNA+ + +LG++ + + +A+ A K L +
Sbjct: 38 YNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
Query: 1669 EPK 1671
+P
Sbjct: 98 DPN 100
|
Length = 100 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/57 (24%), Positives = 19/57 (33%)
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L + +EA+ A AL P A LG + G +A AL
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAAL 58
|
Length = 65 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL-------SPGFVRARYNLGITCVHLG 1845
PD + N L L +EA+E AL+L P RA NL + LG
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 1846 ANTQAVEHFLTAL 1858
+A+E+ AL
Sbjct: 61 DYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-05
Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 34/225 (15%)
Query: 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
+LR G + AI L A +PD+ LG + +A L+K ++P+N
Sbjct: 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398
Query: 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734
A + I K+ G S A L +L R L S
Sbjct: 399 ARTQLGIS----------------KLSQGDPSEAIADLETAAQLDPELGRA--DLLLILS 440
Query: 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794
L S + + L+ A + Q + + N LG ++ + KA + F AL + P
Sbjct: 441 YLRSGQF-DKALAA---AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP 496
Query: 1795 DD--SRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRA 1833
D + A+LA P++A++ + L + P +RA
Sbjct: 497 DFFPAA------ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 736 NGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE-LRDY 794
LG L+ +YD+A++ + AL++ PD + L ++ K+ +E L DY
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAY------YKLGKYEEALEDY 57
Query: 795 QHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843
KA + + + + + A YE+AL++D
Sbjct: 58 ----EKA----LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (105), Expect = 2e-04
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 1598 EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657
+ NP + LG L+ G A+ Y E A + +PDNAE +L + L E + +
Sbjct: 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEE 254
Query: 1658 AIAALSKCLSIEPKNLEALMAISICF 1683
A+ AL K L ++P +A+ +
Sbjct: 255 ALEALEKALELDPDLYNLGLALLLLL 280
|
Length = 291 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISL---AENEQDPQAIAALSKCLS 1667
LG+ + G A+L A + DN E+ L L +L A + +A A L + L+
Sbjct: 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221
Query: 1668 IEPKNLEALM 1677
++P N+ AL
Sbjct: 222 LDPANIRALS 231
|
Length = 287 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
+ + L Y A P + D L + +Y++A++ + AL++ PD
Sbjct: 10 YYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66
Query: 765 FTELLVYLFSSL 776
+ L +
Sbjct: 67 NAKAYYNLGLAY 78
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 1637 DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683
DNAE +LG +L + +AI A K L ++P N EA +++ +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAY 47
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 20/87 (22%), Positives = 32/87 (36%)
Query: 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
+ A + AL+ PDD + L E+A +++ AL L+P N G
Sbjct: 47 LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106
Query: 1839 ITCVHLGANTQAVEHFLTALNQQAATH 1865
G QA++ F A+
Sbjct: 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQ 133
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|111114 pfam02184, HAT, HAT (Half-A-TPR) repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 5e-04
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 827 KQVDRARSIYERALDVDHRNITLWLKYTELEMR 859
K++DRAR IYER + V H + W+K+ E
Sbjct: 1 KEIDRARGIYERFVHV-HPEVQNWIKWARFEEE 32
|
The HAT (Half A TPR) repeat is found in several RNA processing proteins. Length = 32 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 9e-04
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 732 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDF 765
LG + +YD+A++ + AL++ P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652
A P E A G+ ++R G+ A+ L AA+ P + E W LG +L +
Sbjct: 89 LQKSAIAYPKDREL-LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147
Query: 1653 EQDPQAIAALSKCLSIEPKNLEAL--MAIS 1680
+ +A A + L + P + +S
Sbjct: 148 GRFDEARRAYRQALELAPNEPSIANNLGMS 177
|
Length = 257 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
D L + + E +KA D FR AL + P++ + N G L + E+A
Sbjct: 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQA-MQQF 122
Query: 1822 TALQLSPGFV---RARYNLGITCVHLGANTQAVEHFLTALNQQA 1862
P + R+ N G+ + G +A ++ AL
Sbjct: 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.001
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD 1796
LG + +YD+A++ + AL++ P++
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 1797 SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF 1830
++ LG + + +EA+E Y AL+L+P
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 794 YQHRKRKAFEDNIRKNRMVISNWIKYAQWEES 825
R RK +E + K + W+KYA++EE
Sbjct: 2 DIERARKIYERALEKFPKSVELWLKYAEFEER 33
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVR-------PDDSRLWNRLGASLANGNRPEEA 1816
N L ++ +YD+A++ AL++ P+ +R N L +EA
Sbjct: 6 AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65
Query: 1817 VEAYHTALQLSP 1828
+E AL L
Sbjct: 66 LEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.004
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGF 1830
LG + EEA+EAY AL+L P
Sbjct: 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.004
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD 1796
+ LG + +YD+A++ + AL++ P++
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.004
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 732 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDF 765
+ LG + +YD+A++ + AL++ P+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1956 | |||
| KOG1125|consensus | 579 | 100.0 | ||
| KOG1125|consensus | 579 | 100.0 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626|consensus | 966 | 99.97 | ||
| KOG4626|consensus | 966 | 99.97 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| KOG2047|consensus | 835 | 99.92 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| KOG1070|consensus | 1710 | 99.92 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| KOG1126|consensus | 638 | 99.86 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| KOG0495|consensus | 913 | 99.83 | ||
| KOG1915|consensus | 677 | 99.82 | ||
| KOG0495|consensus | 913 | 99.82 | ||
| KOG1126|consensus | 638 | 99.8 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| KOG1915|consensus | 677 | 99.8 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| KOG1155|consensus | 559 | 99.77 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| KOG0547|consensus | 606 | 99.76 | ||
| KOG0547|consensus | 606 | 99.76 | ||
| KOG1070|consensus | 1710 | 99.76 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.75 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.74 | |
| KOG1155|consensus | 559 | 99.73 | ||
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.72 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.72 | |
| KOG1173|consensus | 611 | 99.72 | ||
| KOG4162|consensus | 799 | 99.71 | ||
| KOG1173|consensus | 611 | 99.71 | ||
| KOG0624|consensus | 504 | 99.71 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.71 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.7 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.69 | |
| KOG2002|consensus | 1018 | 99.68 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| KOG2002|consensus | 1018 | 99.68 | ||
| KOG1129|consensus | 478 | 99.66 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| KOG0548|consensus | 539 | 99.65 | ||
| KOG1840|consensus | 508 | 99.64 | ||
| KOG2076|consensus | 895 | 99.64 | ||
| KOG0548|consensus | 539 | 99.64 | ||
| KOG0624|consensus | 504 | 99.63 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| KOG2003|consensus | 840 | 99.6 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.59 | |
| KOG2003|consensus | 840 | 99.57 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG1129|consensus | 478 | 99.56 | ||
| KOG0550|consensus | 486 | 99.55 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.55 | |
| KOG1840|consensus | 508 | 99.55 | ||
| KOG2076|consensus | 895 | 99.55 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.55 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.54 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.54 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.54 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| KOG2047|consensus | 835 | 99.51 | ||
| KOG0550|consensus | 486 | 99.51 | ||
| KOG1174|consensus | 564 | 99.51 | ||
| KOG1174|consensus | 564 | 99.5 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.48 | |
| KOG4162|consensus | 799 | 99.45 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.45 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.44 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.44 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.43 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.38 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.37 | |
| KOG1127|consensus | 1238 | 99.36 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.35 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.33 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.27 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.24 | |
| KOG1130|consensus | 639 | 99.24 | ||
| KOG1914|consensus | 656 | 99.23 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.21 | |
| KOG0128|consensus | 881 | 99.21 | ||
| KOG1130|consensus | 639 | 99.2 | ||
| KOG1156|consensus | 700 | 99.19 | ||
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.13 | |
| KOG1128|consensus | 777 | 99.13 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.12 | |
| KOG1127|consensus | 1238 | 99.12 | ||
| KOG1156|consensus | 700 | 99.11 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.11 | |
| KOG1914|consensus | 656 | 99.1 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.1 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.08 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.08 | |
| KOG1258|consensus | 577 | 99.08 | ||
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.06 | |
| KOG1128|consensus | 777 | 99.06 | ||
| KOG0553|consensus | 304 | 99.02 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.02 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.0 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.0 | |
| KOG3060|consensus | 289 | 98.97 | ||
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.96 | |
| KOG0553|consensus | 304 | 98.96 | ||
| KOG3060|consensus | 289 | 98.95 | ||
| KOG1258|consensus | 577 | 98.92 | ||
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.83 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.82 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.79 | |
| KOG2376|consensus | 652 | 98.79 | ||
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.79 | |
| KOG3785|consensus | 557 | 98.78 | ||
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.77 | |
| KOG2376|consensus | 652 | 98.76 | ||
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.75 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.74 | |
| KOG3785|consensus | 557 | 98.73 | ||
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.72 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.71 | |
| KOG2396|consensus | 568 | 98.71 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.7 | |
| KOG2396|consensus | 568 | 98.68 | ||
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.67 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.65 | |
| KOG4340|consensus | 459 | 98.64 | ||
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.63 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.62 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.62 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.61 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.59 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.57 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.56 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.53 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 98.51 | |
| KOG4340|consensus | 459 | 98.49 | ||
| KOG1941|consensus | 518 | 98.49 | ||
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.48 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.47 | |
| KOG4648|consensus | 536 | 98.47 | ||
| KOG1941|consensus | 518 | 98.45 | ||
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.44 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.44 | |
| KOG0543|consensus | 397 | 98.39 | ||
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.39 | |
| KOG0543|consensus | 397 | 98.37 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.35 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.34 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.34 | |
| KOG3081|consensus | 299 | 98.32 | ||
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.32 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.27 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.24 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.23 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.2 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.2 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.16 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 98.16 | |
| KOG3081|consensus | 299 | 98.16 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.15 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.12 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.08 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.07 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.03 | |
| KOG4648|consensus | 536 | 98.03 | ||
| KOG3617|consensus | 1416 | 98.01 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.99 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.97 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.97 | |
| KOG4234|consensus | 271 | 97.91 | ||
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.89 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.88 | |
| KOG4234|consensus | 271 | 97.88 | ||
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.86 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.85 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.82 | |
| KOG2053|consensus | 932 | 97.8 | ||
| KOG0128|consensus | 881 | 97.8 | ||
| KOG2796|consensus | 366 | 97.79 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.76 | |
| KOG2053|consensus | 932 | 97.74 | ||
| KOG3617|consensus | 1416 | 97.68 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.66 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.65 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.61 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.59 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 97.56 | |
| KOG1586|consensus | 288 | 97.54 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.54 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.49 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.48 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.45 | |
| KOG1586|consensus | 288 | 97.44 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.43 | |
| KOG4555|consensus | 175 | 97.42 | ||
| KOG1585|consensus | 308 | 97.4 | ||
| KOG2796|consensus | 366 | 97.38 | ||
| KOG4555|consensus | 175 | 97.38 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.37 | |
| KOG2471|consensus | 696 | 97.33 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.27 | |
| KOG3616|consensus | 1636 | 97.27 | ||
| KOG1585|consensus | 308 | 97.25 | ||
| KOG4642|consensus | 284 | 97.06 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.06 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.05 | |
| KOG4642|consensus | 284 | 96.92 | ||
| KOG2610|consensus | 491 | 96.87 | ||
| KOG1550|consensus | 552 | 96.81 | ||
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 96.75 | |
| KOG2471|consensus | 696 | 96.75 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.69 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 96.67 | |
| KOG0545|consensus | 329 | 96.66 | ||
| KOG2610|consensus | 491 | 96.66 | ||
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 96.64 | |
| KOG0985|consensus | 1666 | 96.57 | ||
| KOG3616|consensus | 1636 | 96.56 | ||
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 96.55 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.54 | |
| KOG0376|consensus | 476 | 96.52 | ||
| KOG0551|consensus | 390 | 96.5 | ||
| KOG0376|consensus | 476 | 96.49 | ||
| KOG0545|consensus | 329 | 96.47 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.47 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.46 | |
| KOG1550|consensus | 552 | 96.46 | ||
| KOG4507|consensus | 886 | 96.45 | ||
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.45 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 96.44 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.28 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.24 | |
| KOG0551|consensus | 390 | 96.2 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.17 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.1 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.06 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 96.05 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.04 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.93 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.85 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.84 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.8 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.77 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.7 | |
| KOG2300|consensus | 629 | 95.7 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.63 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.54 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.06 | |
| KOG1308|consensus | 377 | 95.02 | ||
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.02 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.02 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.94 | |
| KOG2300|consensus | 629 | 94.93 | ||
| KOG1308|consensus | 377 | 94.92 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.79 | |
| KOG0985|consensus | 1666 | 94.63 | ||
| KOG0890|consensus | 2382 | 94.07 | ||
| KOG2041|consensus | 1189 | 93.92 | ||
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.92 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.91 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 93.86 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.84 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 93.64 | |
| KOG0530|consensus | 318 | 93.33 | ||
| KOG4507|consensus | 886 | 92.9 | ||
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.74 | |
| KOG3824|consensus | 472 | 92.63 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.6 | |
| KOG1464|consensus | 440 | 92.51 | ||
| KOG3824|consensus | 472 | 91.76 | ||
| KOG0890|consensus | 2382 | 91.68 | ||
| KOG0530|consensus | 318 | 91.51 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 91.5 | |
| KOG2041|consensus | 1189 | 91.2 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.05 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.96 | |
| KOG1464|consensus | 440 | 90.66 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 90.5 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 90.48 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.23 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.07 | |
| KOG1463|consensus | 411 | 89.52 | ||
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 89.4 | |
| KOG3783|consensus | 546 | 89.29 | ||
| KOG1839|consensus | 1236 | 89.27 | ||
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.12 | |
| KOG1538|consensus | 1081 | 89.0 | ||
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 88.96 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.87 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 88.66 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 88.16 | |
| KOG1538|consensus | 1081 | 88.02 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 88.02 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 87.98 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.87 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 87.68 | |
| KOG1839|consensus | 1236 | 87.61 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.57 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.45 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 87.41 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 87.29 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.91 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 86.73 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 86.45 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.78 | |
| KOG3807|consensus | 556 | 85.68 | ||
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.33 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.88 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.77 | |
| KOG1310|consensus | 758 | 84.27 | ||
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 84.15 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.7 | |
| KOG1310|consensus | 758 | 83.29 | ||
| KOG4814|consensus | 872 | 82.9 | ||
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.36 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 82.29 | |
| KOG3364|consensus | 149 | 81.76 | ||
| KOG3783|consensus | 546 | 81.49 | ||
| KOG3807|consensus | 556 | 81.23 | ||
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.13 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 80.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 80.56 | |
| KOG4814|consensus | 872 | 80.33 |
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-58 Score=553.40 Aligned_cols=381 Identities=24% Similarity=0.345 Sum_probs=296.8
Q ss_pred CCcccccccCCCCCcchhhhhccccccccccccCCCcCCCCCccC----ccccCChhhHHHHHhhhhc----CCCCcccc
Q psy8682 1 MSLKDLVDGGECGGSNSLMQVTSHFVQDKGLRDEGFHRPYTHEEN----SFANAHPDQLLGEFWEHNL----GNMQQAFR 72 (1956)
Q Consensus 1 Ma~r~LVEg~eCGg~NpLm~L~~hf~qD~a~~~Eg~~~~~~~~~~----~~~~~~~~~lv~efl~~~~----~~~pqtF~ 72 (1956)
|+||+|||| .|||+||||||+++|+.|.+..+|+.+.+.++... |...+.+|+++++||.++. .++|++|+
T Consensus 1 M~~~~~v~g-~~tg~Npl~kL~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~~~~l~~~~lq~~~~p~~~r~P~s~~ 79 (579)
T KOG1125|consen 1 MAMRTLVEG-KCTGSNPLMKLNNTFGLDNNNLQEQLRAHLAKASVAFYIPLQLAEGDELINEFLQQNNQPNVSRGPPSFK 79 (579)
T ss_pred CCccccccc-cccCcCHHHHhhhhccccccccccccccccccchhhhhccccccccchhhHHHHhcccCCcccCCCCccc
Confidence 999999998 99999999999999999999999998754332222 4444577899999994433 35899999
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCCCchhhhhhhhhHHHHHHHHHhcCCC----------CCCC---------C--------
Q psy8682 73 MDNLLAEMRDIEAASQRPKPQQSAPISLLARQDDAREWANQFLEAGSH----------FEHT---------P-------- 125 (1956)
Q Consensus 73 Md~Ll~EM~~Ie~~~~~~~p~~~~~~a~~a~~~~~~~Wa~ef~~~~~~----------~~~~---------~-------- 125 (1956)
||.+|+||++|.+++++..++...+....+ .+++|++.|+.+... ..+. |
T Consensus 80 ~d~~l~~~~~~~~~~~~~~~~~~~~~~~s~---~s~efs~~~~na~~s~~~~t~~~~~~~~~~~~~~~~~~pl~~s~~~~ 156 (579)
T KOG1125|consen 80 MDNLLAETADISIKGVRNASKEFQGLQNSQ---WSEEFSQFFLNALKSDRDVTQPLSRNQHGSEFINESSDPLASSHNRW 156 (579)
T ss_pred hhhhhhccchhhhcccCCcchhcccchhhH---hhhHHHHHhhccccccccccchHhhhcchhhhhccccccccCccccc
Confidence 999999999999999998888887754432 445555555322111 0000 1
Q ss_pred --------------------------------------CccccccCCcCCCCc------------------cc-------
Q psy8682 126 --------------------------------------PETIWDNAPIMRGSE------------------IL------- 142 (1956)
Q Consensus 126 --------------------------------------~~~~~~~~~~~~~~~------------------~~------- 142 (1956)
+..+|+..|....++ +|
T Consensus 157 ~~~~~q~~~e~~~~~~G~~~~~~~~~s~~~~~~~~s~~~~l~~s~~pk~~ng~~~~~W~d~f~~~n~~~e~~f~~a~~~~ 236 (579)
T KOG1125|consen 157 SAEYLQTPEEKSQISNGLATEKDQPGSQRIEELRRSVSEQLIKSLEPKLLNGETEQNWEDQFKSNNYGLEDEFEEAKNSI 236 (579)
T ss_pred chhhhcChhhhcccccccchhccCcchhcchHHHHHHHHHHhhccCcccccCcccccHHHHHhhcCCcchhhHHHHHHHh
Confidence 001122111111121 00
Q ss_pred ----ccccccCCCcC--CCCCchhHHhhccccc--ccCchhhhhhhhhhhhhh---------------------------
Q psy8682 143 ----PQEDLGGLQLG--FGPQWCSEFLRTSEPL--LDNTQEELTNLRALSEDY--------------------------- 187 (1956)
Q Consensus 143 ----~q~~~~~~~~~--~~~~WasEy~~~~~~~--~~~~~~e~~~~~~~~~~~--------------------------- 187 (1956)
+|.+|..+... ..++|+.+|.+....+ +.|.|.|.|||.+++++|
T Consensus 237 e~d~~~~e~eev~~~~~~~~~~~~~~~~~l~~~~~~~Y~F~e~Np~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP 316 (579)
T KOG1125|consen 237 EKDDLQAEWEEVADEDVAAHDWLNDYDDSLSAVPVKGYQFSEENPYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDP 316 (579)
T ss_pred hhhhhhhhHHhcChhhhhcchHHHHHhhhhcccccccceecccCcccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhCh
Confidence 23455444432 5788999999999886 789999999996666666
Q ss_pred -----------hhhhhccChhhHHHHHHHHHHH-----------------------HHhhhhhccCCCcchhhccchhhh
Q psy8682 188 -----------SSDANKADSNQNNILLNALKTT-----------------------AEDSVKTLDQNPDMKQSKLLKFMS 233 (1956)
Q Consensus 188 -----------~q~~ne~d~~~~~~l~~~l~~~-----------------------~~~L~~~~~~~Pk~~~s~~l~~~~ 233 (1956)
+|+|||+|.++|.||.+.+++. +.+|..|+..+|||.++-+-....
T Consensus 317 ~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 317 QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE 396 (579)
T ss_pred HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence 9999999999999999999965 888999999999999843322221
Q ss_pred hhccCCccccCChhHHHHHHHHHHHhhcCCCchhhHHHHHHhhccccccCCCCchhhhh-----------------hhhh
Q psy8682 234 NVATDGTPVLSDPEAATVQQWGSEYQSTTSPEHQWESAFLGQNASVFDLPPRYGPILFC-----------------VSFQ 296 (1956)
Q Consensus 234 ~i~~~e~~v~s~~~~~ea~q~~~e~~~~~~~~~~wd~~~~~aL~~~~~l~~~~~~a~~~-----------------l~~s 296 (1956)
.- ..+-++.+...++.++..|.+++++.|+. .|++++++||++|+|+.+|++|++| ||||
T Consensus 397 ~~-~~~~s~~~~~~l~~i~~~fLeaa~~~~~~--~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 397 DF-ENTKSFLDSSHLAHIQELFLEAARQLPTK--IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGAT 473 (579)
T ss_pred cc-cCCcCCCCHHHHHHHHHHHHHHHHhCCCC--CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHH
Confidence 10 11124455667999999999999999986 8899999999999999999999999 9999
Q ss_pred hhh---hHHHHHHHHHHHhhhhcCCCceeeeeccccccccchhHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCC
Q psy8682 297 WIN---EVKFITLLTLCLIIEVNQHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPH 373 (1956)
Q Consensus 297 ~~n---~~~~~~~~~~~l~~~~~~pg~~r~~yn~~i~~~n~~~~~~a~~~~~~al~~q~~~~~~~~~~~~~~~~~~~~~~ 373 (1956)
+|| +.||+++|+|||.+ +||||||||||||||||||+|+|||+|||+||+||++ +++++...
T Consensus 474 LAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k--------s~~~~~~~---- 538 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK--------SRNHNKAP---- 538 (579)
T ss_pred hcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc--------ccccccCC----
Confidence 999 57999999999999 9999999999999999999999999999999999998 44444332
Q ss_pred CCCchhhhhhhHhHHHHHHHHHHhcCcch-hhhhhccCc
Q psy8682 374 GLEPRAVKEMSDSIWYSLRVVLSVLNRSD-LHHCVTNSP 411 (1956)
Q Consensus 374 ~~~~~~~~~~s~~iw~~lr~~~~~~~~~~-l~~~~~~~~ 411 (1956)
..|++||+|||+||++|+|+| |++++..+-
T Consensus 539 --------~~se~iw~tLR~als~~~~~D~l~~a~~~~n 569 (579)
T KOG1125|consen 539 --------MASENIWQTLRLALSAMNRSDLLQEAAPSRN 569 (579)
T ss_pred --------cchHHHHHHHHHHHHHcCCchHHHHhccccC
Confidence 339999999999999999999 888887653
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=380.02 Aligned_cols=505 Identities=36% Similarity=0.611 Sum_probs=413.1
Q ss_pred hhccccchhhHHHHHHh-hhcC---CCchhhchHHHHHHHHHhhHhcCCCCCCCCcchhhhhhcchHHHHHHHHHhcCCc
Q psy8682 1131 LGISLAENEQLLGEFWE-HNLG---NMQQAFRMDNLLAEMRDIEAASQRPKPQQSAPISLLARQDDAREWANQFLEAGSH 1206 (1956)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1206 (1956)
.|..++++++|+.+||+ .+.+ |+|++|+||++++||++|.+.++|++|+..+|+..++ .+++|++.|+.+...
T Consensus 48 ~p~~~~~~~~l~~~~lq~~~~p~~~r~P~s~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~s~---~s~efs~~~~na~~s 124 (579)
T KOG1125|consen 48 IPLQLAEGDELINEFLQQNNQPNVSRGPPSFKMDNLLAETADISIKGVRNASKEFQGLQNSQ---WSEEFSQFFLNALKS 124 (579)
T ss_pred ccccccccchhhHHHHhcccCCcccCCCCccchhhhhhccchhhhcccCCcchhcccchhhH---hhhHHHHHhhccccc
Confidence 44446999999999998 4444 8999999999999999999999999999999999998 999999999999887
Q ss_pred ---cCCCCCcCcccccccccCCCccccccccCCcCCCCccchhhhhhcccccchhhhHHHhhhhhccccccchhhhhcch
Q psy8682 1207 ---FEHTPPETIWDNAPIMRGSEILPQEDLGGLQLGFGPQWCSEFLRTSEPLLDNTQEELTNLRALSEDYSSDANKADSN 1283 (1956)
Q Consensus 1207 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1283 (1956)
+++......|.++|| .++.+|+.. +...|..+|+++.+++.| +. ++ +++.+|..
T Consensus 125 ~~~~t~~~~~~~~~~~~~--------~~~~~pl~~-s~~~~~~~~~q~~~e~~~--~~---------~G---~~~~~~~~ 181 (579)
T KOG1125|consen 125 DRDVTQPLSRNQHGSEFI--------NESSDPLAS-SHNRWSAEYLQTPEEKSQ--IS---------NG---LATEKDQP 181 (579)
T ss_pred cccccchHhhhcchhhhh--------ccccccccC-cccccchhhhcChhhhcc--cc---------cc---cchhccCc
Confidence 555556788899999 888888754 577899999999999999 32 23 46667776
Q ss_pred hhhhhHHHHHHHHHHhhhhcCCCCcchhhHHHHHHhhccCCCccccCChhhhhhhccccccccCCCCccchHHHHhhccC
Q psy8682 1284 QNNILLNALKTTAEDSVKTLDQNPDMKQSKLLKFMSNVATDGTPVLSDPEAATVQQWGSEFQSTTSPEHQWESAFLGQNA 1363 (1956)
Q Consensus 1284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1363 (1956)
.++..+++.+|+.+.+.+.. +||+.|++ -+++|+++|...+-
T Consensus 182 -~s~~~~~~~~s~~~~l~~s~-~pk~~ng~------------------------------------~~~~W~d~f~~~n~ 223 (579)
T KOG1125|consen 182 -GSQRIEELRRSVSEQLIKSL-EPKLLNGE------------------------------------TEQNWEDQFKSNNY 223 (579)
T ss_pred -chhcchHHHHHHHHHHhhcc-CcccccCc------------------------------------ccccHHHHHhhcCC
Confidence 77888999999999998886 99998776 12366666655110
Q ss_pred CCcccccccCCCCCCCCchhHHhhhhhhccccccCCCCCCCcchhHHHhhhhcccccccccceeeccCCCCCCcchhhhh
Q psy8682 1364 SGTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHVSLVFDLRPRYGPILFCVSF 1443 (1956)
Q Consensus 1364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1443 (1956)
+ .+ ++|
T Consensus 224 -~---------------------------------------~e---~~f------------------------------- 229 (579)
T KOG1125|consen 224 -G---------------------------------------LE---DEF------------------------------- 229 (579)
T ss_pred -c---------------------------------------ch---hhH-------------------------------
Confidence 0 00 222
Q ss_pred hcchhhhhhhHHHHHHhhcchhhhhhchhhhhhccccccCCCCCCCCcccccccccccCCCCcchhhccCChHHHHHHHH
Q psy8682 1444 QWINEVKFITLCLIIEVNQHGIHICGRQSYAERNQCFCFGPGKAQTGPLFSNGVASINQQPVPNTNGNLHSLDRTLAVSK 1523 (1956)
Q Consensus 1444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ae~~~c~~~~p~~a~~~~lf~~a~aslgq~~v~n~yg~l~~fDEAIevfk 1523 (1956)
+.++. .
T Consensus 230 --------------------------------------------------~~a~~----------------------~-- 235 (579)
T KOG1125|consen 230 --------------------------------------------------EEAKN----------------------S-- 235 (579)
T ss_pred --------------------------------------------------HHHHH----------------------H--
Confidence 21121 0
Q ss_pred HhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHhchhhHhHhhhhccCCCc
Q psy8682 1524 LFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQ 1603 (1956)
Q Consensus 1524 ~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~ 1603 (1956)
.++ +.++..|+.+..... ..+.|+.+|+..+.. .+.+.|.+...||..
T Consensus 236 -----------~e~----------------d~~~~e~eev~~~~~----~~~~~~~~~~~~l~~-~~~~~Y~F~e~Np~~ 283 (579)
T KOG1125|consen 236 -----------IEK----------------DDLQAEWEEVADEDV----AAHDWLNDYDDSLSA-VPVKGYQFSEENPYI 283 (579)
T ss_pred -----------hhh----------------hhhhhhHHhcChhhh----hcchHHHHHhhhhcc-cccccceecccCccc
Confidence 000 234556777776553 789999999999998 123889999999988
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
+...-|..|..+++.|+..+|+-+|+.+++.+|.++++|..||.+....++-..|+..+++|++++|++..++..||..|
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
...|.-.+|+.++.+.+.. .|. |..+...... .... ..........+..-.++|..+....|.. +++
T Consensus 364 tNeg~q~~Al~~L~~Wi~~----~p~---y~~l~~a~~~-~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~-~Dp 430 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRN----KPK---YVHLVSAGEN-EDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK-IDP 430 (579)
T ss_pred hhhhhHHHHHHHHHHHHHh----Ccc---chhccccCcc-cccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC-CCh
Confidence 9999999999999999999 777 5554422100 0000 0011112223344556777888888853 569
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
+++..||.+|...|+|++|+.||+.||...|++..+|+.||.++....+.++|+..|++|+++.|.+++++++||.++..
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN 510 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCCc
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKL 1900 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~~ 1900 (1956)
+|.|++|+++|-.||.+.+.+.. .... +.-++.||.+||.++.++++.+
T Consensus 511 lG~ykEA~~hlL~AL~mq~ks~~---~~~~-----~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 511 LGAYKEAVKHLLEALSMQRKSRN---HNKA-----PMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhHHHHHHHHHHHHHhhhcccc---cccC-----CcchHHHHHHHHHHHHHcCCch
Confidence 99999999999999999988332 2211 2226889999999999999853
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-29 Score=327.18 Aligned_cols=324 Identities=16% Similarity=0.182 Sum_probs=279.8
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
...+...+++++|++++..+.... + .+...| ..++ ..+...+++++|+
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~--~---------------~~~~~~-------~~l~--------~~~~~~~~~~~A~ 621 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA--P---------------DSPEAW-------LMLG--------RAQLAAGDLNKAV 621 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC--C---------------CCHHHH-------HHHH--------HHHHHcCCHHHHH
Confidence 456777888888888877553221 0 022223 3333 2344457788888
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKC 1665 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKA 1665 (1956)
.. |++++...|.++ ..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++.+
T Consensus 622 ~~--~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 622 SS--FKKLLALQPDSA----LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HH--HHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88 888887766554 488999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHH
Q psy8682 1666 LSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQV 1745 (1956)
Q Consensus 1666 LeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEA 1745 (1956)
.+..|.....+..+|.++...|++++|+..|++++.. .|+ . .....++.++...|++++|
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~---~-------------~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR----APS---S-------------QNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCC---c-------------hHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999988 666 1 3456788999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
...++++++..|++ ..+++.+|.+|...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+..+++++.
T Consensus 756 ~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 756 VKTLEAWLKTHPND---AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 99999999999998 89999999999999999999999999999999999999999999999999 889999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1826 L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
..|+++..+..+|.++...|++++|+.+|+++++++|.++.++..++.++...|+..+++ ..+.++
T Consensus 832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 897 (899)
T TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR-KELDKL 897 (899)
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887 444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=316.64 Aligned_cols=273 Identities=18% Similarity=0.233 Sum_probs=259.6
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
.++...||.. |++|++++|.-+. +++++|.+|...+.++.|+.+|.+|+.+.|+++.++-++|.+|+.+|..+-
T Consensus 231 ~Gei~~aiq~--y~eAvkldP~f~d----AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 231 QGEIWLAIQH--YEEAVKLDPNFLD----AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred cchHHHHHHH--HHHhhcCCCcchH----HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence 3455667777 8899988877655 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHH
Q psy8682 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS 1737 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~ 1737 (1956)
|+..|++++++.|+.++++.+||.++...|+..+|..+|++++.+ .|. .+++.++||.+|.
T Consensus 305 AI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l----~p~---------------hadam~NLgni~~ 365 (966)
T KOG4626|consen 305 AIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL----CPN---------------HADAMNNLGNIYR 365 (966)
T ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh----CCc---------------cHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 666 5677899999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
++|.+++|..+|.++++..|.. +.+..+||.+|..+|++++|+.+|++++++.|..++++.++|..|..+|+.+.|+
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~---aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEF---AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHhhChhh---hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 9999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhh
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAV 1878 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~l 1878 (1956)
++|.+|+.++|..++++.+||.+|...|+..+|+..|++||+++|+.++++-++..++.-.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998776543
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=304.35 Aligned_cols=295 Identities=19% Similarity=0.261 Sum_probs=277.1
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.-.++..+|..+ |.+|+...|. -+.+|-++|.++..+|+.-.|+..|++|++++|+..++|++||.+|...+.+
T Consensus 195 ka~Grl~ea~~c--YlkAi~~qp~----fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 195 KAEGRLEEAKAC--YLKAIETQPC----FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HhhcccchhHHH--HHHHHhhCCc----eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 334566677776 8999977664 4559999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
++|+.+|.+|+.+.|+++.++-++|.+|+.+|..+-|+..|++++++ +|. ...++.++|.+
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----~P~---------------F~~Ay~NlanA 329 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL----QPN---------------FPDAYNNLANA 329 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc----CCC---------------chHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999 666 56788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
+...|+..+|..+|.+++.+.|.. +++.++||.+|..+|.+++|...|.++++..|..+.+..+||.+|.++|++++
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHH
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhcccc
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l 1895 (1956)
|+.+|+.|+.+.|..++++.++|..|..+|+...|+.+|.+|+.++|..++++.+||.+|...|+..++| ..++.|+.+
T Consensus 407 Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI-~sY~~aLkl 485 (966)
T KOG4626|consen 407 AIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI-QSYRTALKL 485 (966)
T ss_pred HHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH-HHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 667888888
Q ss_pred CCCC
Q psy8682 1896 FGDK 1899 (1956)
Q Consensus 1896 ~gr~ 1899 (1956)
-++-
T Consensus 486 kPDf 489 (966)
T KOG4626|consen 486 KPDF 489 (966)
T ss_pred CCCC
Confidence 7764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-25 Score=290.42 Aligned_cols=304 Identities=20% Similarity=0.185 Sum_probs=194.6
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
+++++|+.. +.+++...|.+ ...++.++..+...|++++|+..+++++...|.+..++..+|.++...|++++|
T Consensus 547 ~~~~~A~~~--~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 547 GNEEEAVAW--LEKAAELNPQE----IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred CCHHHHHHH--HHHHHHhCccc----hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345555554 55555443332 235556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC-chhhhhhcCc------------------
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALP------------------ 1719 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd-~eay~~Ll~~------------------ 1719 (1956)
+..|+++++..|++..++..+|.++...|++++|+..++++++. +|+ ...+..+...
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 621 VSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL----KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666655 444 0000000000
Q ss_pred chhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy8682 1720 SKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799 (1956)
Q Consensus 1720 ~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA 1799 (1956)
...+.....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..++++++..|++..+
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 772 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 0011233445667777777777777777777777777664 455667777777777777777777777777777777
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhc
Q psy8682 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVK 1879 (1956)
Q Consensus 1800 ~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg 1879 (1956)
+..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.++++++.+.|+++..+..+|.++...|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 77777777777777777777777777777777777777777777777 66777777777777777777777777777777
Q ss_pred ccHHHHHHHHHhccccCCC
Q psy8682 1880 EMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1880 ~~seAIws~Lr~Al~l~gr 1898 (1956)
++.+++ ..+++++...+.
T Consensus 852 ~~~~A~-~~~~~a~~~~~~ 869 (899)
T TIGR02917 852 EADRAL-PLLRKAVNIAPE 869 (899)
T ss_pred CHHHHH-HHHHHHHhhCCC
Confidence 776666 566666665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-25 Score=266.64 Aligned_cols=259 Identities=12% Similarity=0.200 Sum_probs=223.1
Q ss_pred CchhHHHhhhcccccCCCCCCCCCCCCCcccccccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCCCC
Q psy8682 651 GIDPVITIFLSEFFSKPVDTPGQESNPRPSAHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSI 730 (1956)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~ 730 (1956)
.+.+++++++.-.. ....|.|++-|||.|+|||.|+||+|+||+| ++| +.++..++|.+.+.+..+
T Consensus 444 Al~lm~~A~~vP~~-~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE-------s~g---tfestk~vYdriidLria--- 509 (835)
T KOG2047|consen 444 ALKLMRRATHVPTN-PELEYYDNSEPVQARLHRSLKIWSMYADLEE-------SLG---TFESTKAVYDRIIDLRIA--- 509 (835)
T ss_pred HHHHHHhhhcCCCc-hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH-------Hhc---cHHHHHHHHHHHHHHhcC---
Confidence 45688888888552 1247778888999999999999999999999 456 999999999999999998
Q ss_pred ChHHHHHHHHHHhhcccHHHHHHHHHHHHhhC--CCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhh
Q psy8682 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR--PDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRK 808 (1956)
Q Consensus 731 d~dV~~~La~Ly~~sgeyEkArelFerALkkf--P~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~ 808 (1956)
+|.+-+++|.+++....++.|.++|++.++.| |.-++||+.|+..+..+. ... ..+|||.+||+||..
T Consensus 510 TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry---gg~-------klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 510 TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY---GGT-------KLERARDLFEQALDG 579 (835)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh---cCC-------CHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999988 677999999998766221 111 256899999999999
Q ss_pred cCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HH
Q psy8682 809 NRM--VISNWIKYAQWEESQKQVDRARSIYERALDVDH--RNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA--NQ 882 (1956)
Q Consensus 809 ~~~--s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~P--k~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks--~~ 882 (1956)
||. +..+++.||+||++.|-..+|.+||+||.+..+ ...++|+.|+.-....-.+-+.|.||++|+...|++ ..
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~ 659 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKARE 659 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHH
Confidence 964 368999999999999999999999999998544 457899999998888888899999999999998876 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhc-----cCchHHHHHHHHhhcccccchHHHHHH
Q psy8682 883 FWYKYTYMEEMLENVAGKLFVFHRDS-----ISQVTLWLGALTLSLEGLGSNLQSWVR 935 (1956)
Q Consensus 883 LW~kYidfE~k~Gd~e~aR~VfERAL-----~~~~~LWl~Yi~fEle~~~~~lk~~~r 935 (1956)
+.++|++||.+.|.+++||.||.-+- ..+.++|..|-+||+.|+. -+.++.
T Consensus 660 mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn--edT~ke 715 (835)
T KOG2047|consen 660 MCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN--EDTYKE 715 (835)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC--HHHHHH
Confidence 89999999999999999999999875 4667899999999999875 344433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-20 Score=251.44 Aligned_cols=294 Identities=13% Similarity=-0.000 Sum_probs=246.8
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCC-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPM-QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~-~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
.|++++.++... +.......+.+|. .++.+++.+|.++.. ++.++|+..|.+++...|++. ....+|.++...|+
T Consensus 449 ~~~~~~~~~~~~--~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr 524 (987)
T PRK09782 449 QWQSQLPGIADN--CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVED 524 (987)
T ss_pred HHHhhhhhhhhh--HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCC
Confidence 345555443333 3344444444443 266799999999987 899999999999999999754 46677888889999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ 1734 (1956)
+++|+..|++++...|.. ..+..+|.++...|++++|+.+|+++++. +|. + ...+..++.
T Consensus 525 ~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l----~P~---~------------~~l~~~La~ 584 (987)
T PRK09782 525 YATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQR----GLG---D------------NALYWWLHA 584 (987)
T ss_pred HHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCc---c------------HHHHHHHHH
Confidence 999999999988776654 46789999999999999999999999998 666 2 122334566
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPE 1814 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGrye 1814 (1956)
.....|++++|+..|+++++.+|+ ..++..+|.++.++|++++|+..|++++.++|+++.++.++|.++...|+++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 666779999999999999999994 7889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccc
Q psy8682 1815 EAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHP 1894 (1956)
Q Consensus 1815 EAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~ 1894 (1956)
+|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+....|.+.....++..+. ..++++..
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~-~~~~r~~~ 739 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH-EEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH-HHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999888777765555 55555544
Q ss_pred cCCC
Q psy8682 1895 PFGD 1898 (1956)
Q Consensus 1895 l~gr 1898 (1956)
....
T Consensus 740 ~~~~ 743 (987)
T PRK09782 740 FSFD 743 (987)
T ss_pred cCcc
Confidence 4333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-23 Score=264.05 Aligned_cols=256 Identities=14% Similarity=0.069 Sum_probs=203.6
Q ss_pred ChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1620 DLPSAILYLEAAAKQ---EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTL 1696 (1956)
Q Consensus 1620 dydEAIe~fekALel---dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~l 1696 (1956)
+|++|+..|++++.. .|....++..+|.++..+|++++|+..|+++++++|++..++..+|.++...|++++|+.+|
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344444444444443 25556677788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q psy8682 1697 KDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776 (1956)
Q Consensus 1697 eKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l 1776 (1956)
+++++. +|+ ...+++.+|.++...|++++|+.+|+++++++|++ ..++..+|.++..+
T Consensus 389 ~~al~~----~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~---~~~~~~la~~~~~~ 446 (615)
T TIGR00990 389 DKALKL----NSE---------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF---IFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHh----CCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC---HHHHHHHHHHHHHC
Confidence 888887 555 34567788888999999999999999999999888 88888899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH------HHHHHHHH-HHcCCHHH
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA------RYNLGITC-VHLGANTQ 1849 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA------~~~LA~ay-~klGdyEE 1849 (1956)
|++++|+..|++++...|+++.++..+|.++..+|++++|+..|++++++.|..... +.+.+.++ ...|++++
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999899999999999999999999999999999999888764322 22333333 44688999
Q ss_pred HHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1850 AVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1850 Aie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
|+.++++++.++|++..++..+|.++..+|++.+|+ .++..+..+...
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~~ 574 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELART 574 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhcc
Confidence 999999999999988888888999999999988888 777777766554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-20 Score=253.90 Aligned_cols=273 Identities=14% Similarity=0.091 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
...+..+|..+...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|+++++..|+++.+++.++..+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
..+++++|+..++++... ..++. ...+. ..........++..+...|++++|+.+++ ..|.+ +.
T Consensus 541 ~~~~~~~Al~~l~~l~~~--~~~~~---~~~l~----~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~---~~ 604 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRA--QWNSN---IQELA----QRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPS---TR 604 (1157)
T ss_pred hCCCHHHHHHHHHhCCch--hcChh---HHHHH----HHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCC---ch
Confidence 999999999999886543 00111 11111 01112335578899999999999999877 57877 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|++.|+++++..|++..++..+|.++..+
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCh------hchhccccchhhhcccHHHHHHHHHhccc
Q psy8682 1845 GANTQAVEHFLTALNQQAATH------DGLTPHGLEPRAVKEMSDSIWYSLRGFHP 1894 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~------dA~~~LG~l~~~lg~~seAIws~Lr~Al~ 1894 (1956)
|++++|+.+|++++...|+++ ..+..+|.++...|+..+|+ ..++.|+.
T Consensus 685 g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~y~~Al~ 739 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL-ETYKDAMV 739 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 999999999999999987654 35556788899999998888 77777764
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=276.59 Aligned_cols=191 Identities=17% Similarity=0.289 Sum_probs=173.4
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhcc
Q psy8682 698 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLD 777 (1956)
Q Consensus 698 ~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~ylsfL~ 777 (1956)
.||++|.|| +.++++++|+||||++++ +.||..|..||..+++++.|.++|+.|+|+|.+..++|+.|+.||.
T Consensus 1503 ~lNlEn~yG---~eesl~kVFeRAcqycd~----~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1503 YLNLENAYG---TEESLKKVFERACQYCDA----YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL 1575 (1710)
T ss_pred HHhHHHhhC---cHHHHHHHHHHHHHhcch----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 467888999 899999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHH
Q psy8682 778 FQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRM--VISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTE 855 (1956)
Q Consensus 778 ~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~--s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~Yad 855 (1956)
.+ ++.+ .||.+++||+...|. |+++..++|++|++.|+.||+|++||..|+.+|++.|||+.|++
T Consensus 1576 ~~------ne~~-------aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1576 RQ------NEAE-------AARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred cc------cHHH-------HHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 32 2223 456677777776655 89999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHh--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 856 LEMRNRQVNHARNLWDRAVTI--LPRA-NQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 856 fE~k~gnierARsLFERAL~~--~Pks-~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
+|+++|+++.+|.||||++.+ .|+. ..++++|++||+++||.++++.|..||+
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 999999999999999999984 4444 6778899999999999999999999986
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-22 Score=255.98 Aligned_cols=300 Identities=13% Similarity=0.072 Sum_probs=259.4
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
....-.++|++|+.. |++++.+.|+ +..++++|.+|...|++++|+..++++++++|++..+++.+|.+|..+
T Consensus 135 ~~~~~~~~~~~Ai~~--y~~al~~~p~-----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 135 NKAYRNKDFNKAIKL--YSKAIECKPD-----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHcCCHHHHHHH--HHHHHhcCCc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456667899999999 9999988763 347999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHH------------------------------HH--------------------------
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLE------------------------------AL-------------------------- 1676 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnae------------------------------Al-------------------------- 1676 (1956)
|++++|+..|..+...++.+.. .+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 9999999887666544332110 00
Q ss_pred -------HHHHHHH---HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1677 -------MAISICF---TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1677 -------~~LA~aY---~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
..++..+ ...+.|++|+.+|++++.. .+. .+..+.++..+|.++...|++++|+
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~----~~~------------~~~~a~a~~~lg~~~~~~g~~~eA~ 351 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDL----GKL------------GEKEAIALNLRGTFKCLKGKHLEAL 351 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc----CCC------------ChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 1111111 1125688888888888876 211 1345667889999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
..|+++++++|.. ..++..+|.++..+|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++
T Consensus 352 ~~~~kal~l~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 352 ADLSKSIELDPRV---TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+|++..++.++|.++..+|++++|+..|++++...|+++.++..+|.++..+|++.+++ ..+++++.+.+..
T Consensus 429 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~-~~~~~Al~l~p~~ 500 (615)
T TIGR00990 429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI-EKFDTAIELEKET 500 (615)
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999998888 8888888876653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=254.28 Aligned_cols=294 Identities=14% Similarity=0.085 Sum_probs=261.5
Q ss_pred hhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q psy8682 1577 WFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656 (1956)
Q Consensus 1577 WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdye 1656 (1956)
..+++++|+.. |++++...|.++. ++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 88 ~~g~~~~A~~~--l~~~l~~~P~~~~----a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 88 ASSQPDAVLQV--VNKLLAVNVCQPE----DVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred hcCCHHHHHHH--HHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChH
Confidence 36788999988 8999988877665 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH
Q psy8682 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL 1736 (1956)
Q Consensus 1657 EALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay 1736 (1956)
+|+..+++++...|++..++..++. +...|++++|+..+++++.. +|. ........++.++
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~----~~~--------------~~~~~~~~l~~~l 222 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPF----FAL--------------ERQESAGLAVDTL 222 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc----CCC--------------cchhHHHHHHHHH
Confidence 9999999999999999988877654 78899999999999999887 443 0111224467888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1737 SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK----AVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1737 ~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeE----Aie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
...|++++|+..|++++...|++ +.++..+|.++...|++++ |+..|+++++++|+++.++..+|.++..+|+
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 89999999999999999999998 9999999999999999986 8999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1813 yeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
+++|+..++++++++|++..++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++.+++ ..++.+
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~-~~l~~a 378 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE-SVFEHY 378 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887777888899999988877 777777
Q ss_pred cccCCCC
Q psy8682 1893 HPPFGDK 1899 (1956)
Q Consensus 1893 l~l~gr~ 1899 (1956)
+...+++
T Consensus 379 l~~~P~~ 385 (656)
T PRK15174 379 IQARASH 385 (656)
T ss_pred HHhChhh
Confidence 7765553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-21 Score=247.93 Aligned_cols=292 Identities=12% Similarity=0.013 Sum_probs=259.5
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
+++.+|+.. +...+...|.++. +++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|
T Consensus 56 g~~~~A~~l--~~~~l~~~p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 56 DETDVGLTL--LSDRVLTAKNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred CCcchhHHH--hHHHHHhCCCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 566677776 6667766666555 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~ 1738 (1956)
+..|+++++++|++..++..++.++...|++++|+..+++++.. .|+ ....+..+ ..+..
T Consensus 130 i~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----~P~---------------~~~a~~~~-~~l~~ 189 (656)
T PRK15174 130 ADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE----VPP---------------RGDMIATC-LSFLN 189 (656)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCC---------------CHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999888 666 11223333 34788
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH---
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE--- 1815 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE--- 1815 (1956)
.|++++|+..++++++..|.. .......++.++...|++++|+..|++++...|+++.++..+|.++...|++++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~--~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALE--RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHH
Confidence 999999999999999987643 134456678899999999999999999999999999999999999999999996
Q ss_pred -HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccc
Q psy8682 1816 -AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHP 1894 (1956)
Q Consensus 1816 -Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~ 1894 (1956)
|+..|+++++++|++..++..+|.++...|++++|+.++++++.++|+++.++..+|.++...|++.+++ ..+..+..
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~-~~l~~al~ 346 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS-DEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998888 55666666
Q ss_pred cCCCC
Q psy8682 1895 PFGDK 1899 (1956)
Q Consensus 1895 l~gr~ 1899 (1956)
..+..
T Consensus 347 ~~P~~ 351 (656)
T PRK15174 347 EKGVT 351 (656)
T ss_pred hCccc
Confidence 55543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=257.74 Aligned_cols=302 Identities=16% Similarity=0.154 Sum_probs=226.9
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCcc----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQN----------ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVW 1642 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~d----------aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl 1642 (1956)
..+...+++++|+.. |+++++..|+++... ......+|..+...|++++|+..|+++++.+|+++.++
T Consensus 311 ~~~~~~g~~~eA~~~--l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~ 388 (1157)
T PRK11447 311 QAYSQQGDRARAVAQ--FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAV 388 (1157)
T ss_pred HHHHHcCCHHHHHHH--HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 455667889999998 999998888765311 11234568889999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------------------
Q psy8682 1643 LSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT-------------------------------------- 1684 (1956)
Q Consensus 1643 ~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~-------------------------------------- 1684 (1956)
..+|.++...|++++|++.|+++++++|++..++..++.+|.
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999999999999999999999888777776653
Q ss_pred ----HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q psy8682 1685 ----NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS 1760 (1956)
Q Consensus 1685 ----~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~ 1760 (1956)
..|++++|+..|+++++. +|+ ...+++.+|.+|...|++++|+..++++++..|.+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~----~P~---------------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~- 528 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLAL----DPG---------------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND- 528 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Confidence 345555555555555555 443 23345556666666666666666666666666665
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HHhCCCCHHHH
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSA----------------------------------------LQVRPDDSRLW 1800 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekA----------------------------------------Lel~PdnaeA~ 1800 (1956)
+.+++.+|..+...+++++|+..++++ ++..|.++.++
T Consensus 529 --~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~ 606 (1157)
T PRK11447 529 --PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRID 606 (1157)
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHH
Confidence 555555554444455555444443321 12345566667
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcc
Q psy8682 1801 NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKE 1880 (1956)
Q Consensus 1801 ~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~ 1880 (1956)
..+|.++.+.|++++|+..|+++++.+|++..++..++.+|...|++++|+.+|+++++..|+++.++..+|.++...|+
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC
Confidence 77888888889999999999999999999999999999999999999999999999988888888888888888888888
Q ss_pred cHHHHHHHHHhccccCCCC
Q psy8682 1881 MSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1881 ~seAIws~Lr~Al~l~gr~ 1899 (1956)
+.+++ ..++.++...+..
T Consensus 687 ~~eA~-~~~~~al~~~~~~ 704 (1157)
T PRK11447 687 TAAAQ-RTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHH-HHHHHHhhhCccC
Confidence 87777 6777776665443
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=230.92 Aligned_cols=289 Identities=14% Similarity=0.137 Sum_probs=258.3
Q ss_pred HHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy8682 1581 FSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660 (1956)
Q Consensus 1581 YeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe 1660 (1956)
.++|+.. |.+.-....+ ..-.+..+|.+|+..++|++|..+|+.+-++.|...+..-.+..+++.+.+--+--.
T Consensus 335 ~~~A~~~--~~klp~h~~n----t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNL--FEKLPSHHYN----TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSY 408 (638)
T ss_pred HHHHHHH--HHhhHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHH
Confidence 3677776 6662222222 334888999999999999999999999999999888888888888888877666556
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC
Q psy8682 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE 1740 (1956)
Q Consensus 1661 ~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG 1740 (1956)
+.+..++.+|+.++.|..+|++|..+++++.|+++|++|+++ +|. .+.+|..+|.-+....
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~---------------faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPR---------------FAYAYTLLGHESIATE 469 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCc---------------cchhhhhcCChhhhhH
Confidence 667788999999999999999999999999999999999999 776 4456677888889999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY 1820 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~y 1820 (1956)
.++.|..+|+.|+..+|.+ ..+|+.+|.+|.++++++.|.-.|++|+.++|.+..+...+|.++.+.|+.++|+..|
T Consensus 470 e~d~a~~~fr~Al~~~~rh---YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRH---YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HHHhHHHHHHhhhcCCchh---hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1821 HTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1821 eKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
++|+.++|.++-..+..|.++..++++++|+..+++.-++-|+...+++.+|.+|.++|+...|+ ..+..|..+-++
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpk 623 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPK 623 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998887 455555555554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-19 Score=212.66 Aligned_cols=271 Identities=14% Similarity=0.047 Sum_probs=234.2
Q ss_pred hhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q psy8682 1577 WFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAEN 1652 (1956)
Q Consensus 1577 WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn----aeAl~~LA~ay~~l 1652 (1956)
..+++++|+.. |.+++...|.+ ..+++.+|..+...|++++|+..+++++...+.. ..++..+|.+|...
T Consensus 47 ~~~~~~~A~~~--~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 47 LNEQPDKAIDL--FIEMLKVDPET----VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred hcCChHHHHHH--HHHHHhcCccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34678888888 88888876554 5589999999999999999999999998754332 35788999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++. .|. ... ......+..+
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~-------~~~~~~~~~l 186 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL----GGD---SLR-------VEIAHFYCEL 186 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh----cCC---cch-------HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 554 100 1123346678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-SRLWNRLGASLANGN 1811 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn-aeA~~nLG~ay~qlG 1811 (1956)
|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+..+++++...|.+ ..++..++.+|...|
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999988 8899999999999999999999999999988876 467889999999999
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
++++|+..++++++..|+... +..++.++.+.|++++|+..++++++..|++......+
T Consensus 264 ~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 264 DEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred CHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 999999999999999998754 48899999999999999999999999999977654333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=210.06 Aligned_cols=274 Identities=15% Similarity=0.075 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN----LEALMAIS 1680 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn----aeAl~~LA 1680 (1956)
....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999998854332 25688999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS 1760 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~ 1760 (1956)
.+|...|++++|+.+|+++++. +|. ...++..++.++...|++++|++.++++++..|.+.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~----~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDE----GDF---------------AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcC----Ccc---------------hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999987 444 344677889999999999999999999999887651
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-HHHHHHH
Q psy8682 1761 I--DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-VRARYNL 1837 (1956)
Q Consensus 1761 ~--~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-aeA~~~L 1837 (1956)
. ....+..+|.++...|++++|+.+|+++++..|+...++..+|.++...|++++|+..|++++..+|.+ ..++..+
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 1 123567899999999999999999999999999999999999999999999999999999999998876 4678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+.+|...|++++|+..++++++..|+... +..+|.++...|++.+++ ..+..++...++.
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~-~~l~~~l~~~P~~ 315 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQ-ALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHH-HHHHHHHHhCcCH
Confidence 99999999999999999999999998754 488999999999998877 7777777765553
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=219.31 Aligned_cols=236 Identities=17% Similarity=0.224 Sum_probs=212.2
Q ss_pred ccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCC
Q psy8682 684 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 763 (1956)
Q Consensus 684 ~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP 763 (1956)
...||+.-.-+.+ .|| +.|++..+|.+||.+.|. ....|+-++..+...|+...|+.+...|+..+|
T Consensus 549 k~slWlra~~~ek-------~hg---t~Esl~Allqkav~~~pk---ae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 549 KKSLWLRAAMFEK-------SHG---TRESLEALLQKAVEQCPK---AEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred hhHHHHHHHHHHH-------hcC---cHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 4567877665544 788 899999999999999997 688899999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhccc
Q psy8682 764 DFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843 (1956)
Q Consensus 764 ~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~ 843 (1956)
++.+||+.-.+.+. .... .+|||.+|.++-.. ..+..+|++|+.||.-+++.++|+.++|++|..+
T Consensus 616 nseeiwlaavKle~------en~e-------~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEF------ENDE-------LERARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred CcHHHHHHHHHHhh------cccc-------HHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999998885544 1222 45777777777654 6778899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc---cCchHHHHHHHH
Q psy8682 844 HRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS---ISQVTLWLGALT 920 (1956)
Q Consensus 844 Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL---~~~~~LWl~Yi~ 920 (1956)
|...+||++..+++...++++.||.-|-.+++.||.+..||+...++|++.|.+.+||.|++|+. |++..+|+.-|+
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 888999999999
Q ss_pred hhcccccchHHHHHHHHHHHhcccc-Ccc
Q psy8682 921 LSLEGLGSNLQSWVRFLARDVGECC-CGQ 948 (1956)
Q Consensus 921 fEle~~~~~lk~~~r~l~ralkec~-~g~ 948 (1956)
+|+. .++.....-.|+++||||| .|-
T Consensus 762 ~ElR--~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 762 MELR--AGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred HHHH--cCCHHHHHHHHHHHHHhCCccch
Confidence 9999 4578888999999999999 443
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-20 Score=216.82 Aligned_cols=158 Identities=60% Similarity=1.025 Sum_probs=149.1
Q ss_pred CCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Q psy8682 780 PPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMR 859 (1956)
Q Consensus 780 ~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k 859 (1956)
+|++++.|+++..++..|.|+-||..|++.+.....|++||+||.+++++.+||+||||||......+.||+.|++||++
T Consensus 40 ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emk 119 (677)
T KOG1915|consen 40 PPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMK 119 (677)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc--cCchHHHHHHHHhhcccccchHHHHHHHH
Q psy8682 860 NRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS--ISQVTLWLGALTLSLEGLGSNLQSWVRFL 937 (1956)
Q Consensus 860 ~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL--~~~~~LWl~Yi~fEle~~~~~lk~~~r~l 937 (1956)
.+.+..||+||+||+...|+..+||.+|+-||+..||+..||.||+|-+ .+..+.|+.||+||+. .+..+.....+
T Consensus 120 nk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElR--ykeieraR~IY 197 (677)
T KOG1915|consen 120 NKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELR--YKEIERARSIY 197 (677)
T ss_pred hhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--hhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 8889999999999999 44666666666
Q ss_pred HH
Q psy8682 938 AR 939 (1956)
Q Consensus 938 ~r 939 (1956)
+|
T Consensus 198 er 199 (677)
T KOG1915|consen 198 ER 199 (677)
T ss_pred HH
Confidence 66
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-16 Score=191.31 Aligned_cols=282 Identities=18% Similarity=0.139 Sum_probs=217.8
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
++++...-|..+. .|+..+..+...|+...|...+.++++.+|++-+.|+..-.+.....+++.|..+|.++....
T Consensus 573 lqkav~~~pkae~----lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 573 LQKAVEQCPKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHHHhCCcchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 4456655554443 677777778888888888888888888888888888888888888888888888888887765
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
|. ..+|+.-+.+...+++.++|+++++++++. .|. | ...|..+|.++.+.++.+.|...|
T Consensus 649 gT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~----fp~---f------------~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 649 GT-ERVWMKSANLERYLDNVEEALRLLEEALKS----FPD---F------------HKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred Cc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHh----CCc---h------------HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 54 346777777778888888888888888887 555 3 334567788888888888888888
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
...++..|.. ...|..++.+-...|..-.|...++++.-.+|.+...|......-.+.|+.+.|.....+|++..|+
T Consensus 709 ~~G~k~cP~~---ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 709 LQGTKKCPNS---IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HhccccCCCC---chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 8888888887 7788888888888888888888888888888888888888888888888888888888888776654
Q ss_pred ------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhc
Q psy8682 1830 ------------------------------FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVK 1879 (1956)
Q Consensus 1830 ------------------------------naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg 1879 (1956)
++.++...|..+....+++.|.+.|.+|+.++|++.++|...=..+...|
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 34456778889999999999999999999999999999887766666677
Q ss_pred ccHHHHHHHHHhccccCCCC
Q psy8682 1880 EMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1880 ~~seAIws~Lr~Al~l~gr~ 1899 (1956)
.-.+.. +-+.++....+++
T Consensus 866 ~eed~k-ev~~~c~~~EP~h 884 (913)
T KOG0495|consen 866 TEEDQK-EVLKKCETAEPTH 884 (913)
T ss_pred CHHHHH-HHHHHHhccCCCC
Confidence 543333 4556655555554
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=213.34 Aligned_cols=265 Identities=15% Similarity=0.153 Sum_probs=236.9
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
.++.-+.+|+++... |+.+.+..|--- +..-.....++...+--+--.+.+..+..+|+.+++|..+|.+|..+
T Consensus 361 rayFEl~~Y~~a~~~--F~~~r~~~p~rv----~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 361 RAYFELIEYDQAERI--FSLVRRIEPYRV----KGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHH--HHHHHhhccccc----cchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 356667889999887 877776654322 22333344555555544444556677889999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
++++.|+++|++|++++|...-+|..+|.-+....++|.|..+|++|+.. +|+ .-.+|+.+
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~r---------------hYnAwYGl 495 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPR---------------HYNAWYGL 495 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----Cch---------------hhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999 665 55688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
|.+|.++++++.|.-.|++|++++|.+ ..+...+|.++.++|+.++|+..|++|+.++|.++...+..|.++..+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSN---SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccc---hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1813 yeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+++|+..+++..++.|+...+++.+|.+|.++|+.+.|+..|.-|+.++|.-.
T Consensus 573 ~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999843
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-17 Score=216.57 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=106.0
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
+....+++++|+.. |++++++.|.++. +++.+|.++...|++++|+..++++++.+|+++. +..+|.++...|
T Consensus 58 ~~~~~g~~~~A~~~--~~~al~~~P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 58 AYRNLKQWQNSLTL--WQKALSLEPQNDD----YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHcCCHHHHHHH--HHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 44456788899988 9999988777654 8899999999999999999999999999999999 999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leK 1698 (1956)
++++|+..+++++++.|++..++..++.++...+..++|+..+++
T Consensus 131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 999999999999999999999999999999888888877766664
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=206.25 Aligned_cols=215 Identities=20% Similarity=0.253 Sum_probs=189.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhH
Q psy8682 714 VLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRD 793 (1956)
Q Consensus 714 v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~ 793 (1956)
=.+-|+-.++.|.- +-.+|++||.--+..+++.+||.+|++|+.....+..+|++|+.+.+ ...
T Consensus 58 kRkefEd~irrnR~---~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-------------knk 121 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRL---NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-------------KNK 121 (677)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-------------hhh
Confidence 34568888888875 78899999999999999999999999999999999999999998876 223
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy8682 794 YQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRA 873 (1956)
Q Consensus 794 ~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k~gnierARsLFERA 873 (1956)
....||++++||+...|.-..+|.+|.-.|+..|++.-||+||||.+..-|.- .-|+.|++||.+++++++||+||+|.
T Consensus 122 ~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 122 QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45679999999999989999999999999999999999999999999987764 88999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc------cCchHHHHHHHHhhcccccchHHHHHHHHHHHhccccCc
Q psy8682 874 VTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS------ISQVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECCCG 947 (1956)
Q Consensus 874 L~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL------~~~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~~g 947 (1956)
+-.+|+. .-|++|+.||.++|++..+|.||+||+ .-...+.+.+.+||.. .+......-.+.++|-..|-|
T Consensus 201 V~~HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~--qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 201 VLVHPKV-SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER--QKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred heecccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCcc
Confidence 9999996 889999999999999999999999998 2334578899999877 556666777778887766655
Q ss_pred c
Q psy8682 948 Q 948 (1956)
Q Consensus 948 ~ 948 (1956)
.
T Consensus 278 r 278 (677)
T KOG1915|consen 278 R 278 (677)
T ss_pred c
Confidence 3
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-17 Score=218.60 Aligned_cols=271 Identities=11% Similarity=-0.039 Sum_probs=242.3
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
+++.+|+.. |.++....|++ ...+.+|..+...|++++|+..|++++...|.+ ..++.+|.++...|++++|
T Consensus 490 ~~~~eAi~a--~~~Al~~~Pd~-----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA 561 (987)
T PRK09782 490 TLPGVALYA--WLQAEQRQPDA-----WQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAAR 561 (987)
T ss_pred CCcHHHHHH--HHHHHHhCCch-----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHH
Confidence 355667776 67777666542 246677888889999999999999988775554 5678999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~ 1738 (1956)
+.+|+++++.+|+....+..++..+...|++++|+..|+++++. +|+ ..++.++|.++..
T Consensus 562 ~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l----~P~----------------~~a~~~LA~~l~~ 621 (987)
T PRK09782 562 DRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI----APS----------------ANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCC----------------HHHHHHHHHHHHH
Confidence 99999999999999888888877777889999999999999999 554 3457889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie 1818 (1956)
.|++++|+..|++++.++|++ +.++.++|.++...|++++|+..|+++++..|+++.++.++|.++..+|++++|+.
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNN---SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhccc
Q psy8682 1819 AYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881 (1956)
Q Consensus 1819 ~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~ 1881 (1956)
+|++++++.|++..+....|.+.....+++.|.+.|.++..++|+.. +....|.++...+++
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 99999999999999999999999999999999999999999999977 777777776655554
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-17 Score=194.09 Aligned_cols=266 Identities=18% Similarity=0.163 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
.-...|.+.+.+.++++|+..|+.+.+.+|...+-+..+..+++-..+-.+-.-+.+.+..++.-.++...-+|+.|...
T Consensus 264 i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr 343 (559)
T KOG1155|consen 264 IKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR 343 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHH
Confidence 66678899999999999999999999999988877777788777776655555555677788877788888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
++.++|+.+|++++++ +|+ ...+|..+|.-|..+.+...|+..|++|++++|.+ ..+|
T Consensus 344 ~eHEKAv~YFkRALkL----Np~---------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D---yRAW 401 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKL----NPK---------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD---YRAW 401 (559)
T ss_pred HhHHHHHHHHHHHHhc----Ccc---------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh---HHHH
Confidence 9999999999999999 888 34456788999999999999999999999999998 9999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGd 1846 (1956)
+.||++|..++...=|+-+|++|+.+.|+++..|..||.||.++++.++|+++|.+|+.....+..++..||.+|.++++
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHH-------hcCCChhchhccccchhhhcccHHHHHHHHHhcccc
Q psy8682 1847 NTQAVEHFLTALN-------QQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1847 yEEAie~yekALe-------LdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l 1895 (1956)
..+|..+|++.++ ..|.-..+..-|+......+++.+|- .|...++..
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~ 536 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcC
Confidence 9999999999998 34544556666777777778887765 444444333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=210.89 Aligned_cols=335 Identities=11% Similarity=0.003 Sum_probs=256.9
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
...+...+++++|++++....... |.+ ...+. .+. ......+++++|+
T Consensus 56 A~~~~~~g~~~~A~~~~~~al~~~--P~~---------------~~a~~-------~la--------~~l~~~g~~~eA~ 103 (765)
T PRK10049 56 AVAYRNLKQWQNSLTLWQKALSLE--PQN---------------DDYQR-------GLI--------LTLADAGQYDEAL 103 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCC---------------HHHHH-------HHH--------HHHHHCCCHHHHH
Confidence 356889999999999976543221 111 11221 222 2334467889999
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH--
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS-- 1663 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~ye-- 1663 (1956)
.. +++++...|. ++. ++.+|.++...|++++|+..|+++++.+|++..++..+|.++...+..++|+..++
T Consensus 104 ~~--l~~~l~~~P~----~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 104 VK--AKQLVSGAPD----KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HH--HHHHHHhCCC----CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 88 8888876544 455 88999999999999999999999999999999999999999887777766555444
Q ss_pred --------------------------------------------HHHHhCCCCHH-------HHHH-HHHHHHHcCCHHH
Q psy8682 1664 --------------------------------------------KCLSIEPKNLE-------ALMA-ISICFTNEACLHD 1691 (1956)
Q Consensus 1664 --------------------------------------------KALeLdPdnae-------Al~~-LA~aY~~lGdydE 1691 (1956)
++++..|.++. ++.. ++ ++...|++++
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~e 255 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKD 255 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHH
Confidence 33333222211 1111 23 3356677888
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLG 1770 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG 1770 (1956)
|+..|+++++. .|. .|.. +...+|.+|...|++++|+.+|+++++..|.+ .........++
T Consensus 256 A~~~~~~ll~~----~~~------------~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 256 VISEYQRLKAE----GQI------------IPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHhhcc----CCC------------CCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 88888887766 322 0111 22335889999999999999999999887764 11245677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1771 VLFNLSDEYDKAVDCFRSALQVRPD---------------DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1771 ~ly~~lGdyeEAie~fekALel~Pd---------------naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
.++...|++++|+..++++....|. ...++..+|.++...|++++|+..+++++...|++..++.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8889999999999999999988762 2357788999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1836 NLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1836 ~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
.+|.++...|++++|+..+++++.++|++...++.+|.++...+++.++. ..++.++...++.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd~ 460 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999987776 7777777777765
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-17 Score=194.21 Aligned_cols=237 Identities=16% Similarity=0.214 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
++++...|..++..|++-.|...|+++|.++|.+...|..+|.+|.+..+.++-...|.+|..++|+++++|+..|.+++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
-++++++|+..|++++.+ +|. .+.++..++.+.+++++++++...|+.+.+..|.. ++
T Consensus 406 lL~q~e~A~aDF~Kai~L----~pe---------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~---~E 463 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISL----DPE---------------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC---PE 463 (606)
T ss_pred HHHHHHHHHHHHHHHhhc----Chh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---ch
Confidence 999999999999999999 666 55677889999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhCCCcHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD------DSRLWNRLGASLA-NGNRPEEAVEAYHTALQLSPGFVRARYNL 1837 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~Pd------naeA~~nLG~ay~-qlGryeEAie~yeKALeL~PdnaeA~~~L 1837 (1956)
++...|.++..++++++|++.|++|+.+.|. ++..+...|.+.. -.+++..|+..+++|++++|..-.++..|
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl 543 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL 543 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH
Confidence 9999999999999999999999999999998 5555666665544 36899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
|.+..++|+.++|+++|++++.+...
T Consensus 544 aq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 544 AQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988655
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-17 Score=193.55 Aligned_cols=290 Identities=13% Similarity=0.099 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
+..+-.+|.-++..|+|++||.+|.+||.+.|+.+..|.+++.+|...|++++-++...++++++|+...+++..+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHH------------------HHHHhc-------------CCCCCCC---chhhhhhcCcc----------
Q psy8682 1685 NEACLHDALDTL------------------KDKIRP-------------GQESNPR---PSAYKADALPS---------- 1720 (1956)
Q Consensus 1685 ~lGdydEALe~l------------------eKALel-------------g~e~dPd---~eay~~Ll~~~---------- 1720 (1956)
.+|++++|+... ++.++. ....-|. ...|.......
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 999999887532 111111 0011111 00111000000
Q ss_pred ----------------------------------------------hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy8682 1721 ----------------------------------------------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754 (1956)
Q Consensus 1721 ----------------------------------------------Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALe 1754 (1956)
.+...+.++...|..++-.|++..|...++.++.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1122355566677778889999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1755 QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1755 l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
++|.. ...|..+|.+|....+.++-...|++|..++|.++.+|+..|.+++-++++++|+..|++++.++|+++.++
T Consensus 355 l~~~~---~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPAF---NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred cCccc---chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 99998 677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1835 YNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1835 ~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
..++.+.+++++++++...|+.+....|+.++++...|.++..++++..++ ..+..|+.+.++
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~-k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV-KQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH-HHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999998888 888999888877
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=212.65 Aligned_cols=226 Identities=17% Similarity=0.224 Sum_probs=187.9
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhC-C----CCHHHHHHHHhhccCCCCCCCCCChHH
Q psy8682 716 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-P----DFTELLVYLFSSLDFQPPKQKISDPDE 790 (1956)
Q Consensus 716 ~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkf-P----~d~~IWl~ylsfL~~~~~~~ki~d~Ee 790 (1956)
+=|.+.+..+|. ..=+|++|..++..-+++|+||+++++||+.- + ..-.+|+.|+..+. ..+..+.
T Consensus 1445 eDferlvrssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn------~yG~ees 1515 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN------AYGTEES 1515 (1710)
T ss_pred HHHHHHHhcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH------hhCcHHH
Confidence 448888899887 67889999999999999999999999999853 2 23679999997665 3344444
Q ss_pred hhHHHHH--------------------------HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccC
Q psy8682 791 LRDYQHR--------------------------KRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDH 844 (1956)
Q Consensus 791 a~~~~~R--------------------------AR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~P 844 (1956)
.....+| |.++|+++++++....++|++|+++.++++..+.||.++.|||...|
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 3333333 56677788888888899999999999999999999999999999999
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc------cCchHHHH
Q psy8682 845 R--NITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS------ISQVTLWL 916 (1956)
Q Consensus 845 k--~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL------~~~~~LWl 916 (1956)
+ ++++-.+++++|.++|+.+|+|++||..+..+|++.++|..||++|.++|+.+.+|.+|||++ .....++.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 8 899999999999999999999999999999999999999999999999999999999999998 34456888
Q ss_pred HHHHhhcccccchHHHHHHHHHHHhccccCccceeeeccccC
Q psy8682 917 GALTLSLEGLGSNLQSWVRFLARDVGECCCGQVVSTVDSEVG 958 (1956)
Q Consensus 917 ~Yi~fEle~~~~~lk~~~r~l~ralkec~~g~~~~~~~~~~~ 958 (1956)
.|+++|.++++..--.+++ +||.. ||+.+.+.+|
T Consensus 1676 kwLeyEk~~Gde~~vE~VK--arA~E------Yv~s~~s~~~ 1709 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVK--ARAKE------YVESIKSKSG 1709 (1710)
T ss_pred HHHHHHHhcCchhhHHHHH--HHHHH------HHHHhhhccC
Confidence 8888899976655444443 34433 6666666554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-18 Score=200.61 Aligned_cols=265 Identities=20% Similarity=0.163 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ--EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALel--dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
..+.+|..++..|++++|+..+.+.+.. .|++...|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3457799999999999999999766544 488999999999999999999999999999999999988888888888 7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCCCC
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC--PSQSID 1762 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~--P~n~~~ 1762 (1956)
..+++++|+.++.++.+. .++ ...+...+.++...++++++...+.++.... +.+
T Consensus 89 ~~~~~~~A~~~~~~~~~~----~~~----------------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 145 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER----DGD----------------PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS--- 145 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T----
T ss_pred cccccccccccccccccc----ccc----------------cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC---
Confidence 899999999999988776 322 1122345577889999999999999987654 344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..+..+|.++...|+.++|+.+|+++++.+|++..+...++.++...|+++++...++...+..|.++..+..+|.++.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 225 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL 225 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999999988888888889999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccC
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPF 1896 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~ 1896 (1956)
.+|++++|+.+|++++..+|+++..+..+|.++...|+..+|. ..+++++..+
T Consensus 226 ~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~l 278 (280)
T PF13429_consen 226 QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRLL 278 (280)
T ss_dssp HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 9999999999999999999999999999999999999997776 5555555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-16 Score=201.20 Aligned_cols=257 Identities=14% Similarity=0.009 Sum_probs=216.6
Q ss_pred cHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCC
Q psy8682 1604 NETNAFALGQEKLRQ---GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN---------EQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1604 daeall~LG~aylk~---GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l---------GdyeEALe~yeKALeLdPd 1671 (1956)
++-.++..|..++.. +++++|+.+|+++++++|+++.++..+|.++... +++++|+..++++++++|+
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 444566677655544 3578999999999999999999999999987644 3489999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
++.++..+|.++...|++++|+..|++++++ +|+ .+.+++.+|.++...|++++|+..+++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----~P~---------------~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLL----SPI---------------SADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999 777 455678899999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn 1830 (1956)
+++++|.+ +..+..++.+++..|++++|+..+++++... |+++.++..+|.++..+|++++|...++++....|..
T Consensus 398 Al~l~P~~---~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 398 CLKLDPTR---AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHhcCCCC---hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 99999998 6666667777888999999999999999875 7889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHH
Q psy8682 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDS 1884 (1956)
Q Consensus 1831 aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seA 1884 (1956)
..++..++.+|...|+ +|...+++.++..-..+.-......++.-.|+...+
T Consensus 475 ~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (553)
T PRK12370 475 LIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAE 526 (553)
T ss_pred HHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHH
Confidence 9999999999999884 777777776665443333333355555555655443
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=182.16 Aligned_cols=280 Identities=19% Similarity=0.210 Sum_probs=238.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------------------HHHHcCC
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGI-----------------------------SLAENEQ 1654 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~-----------------------------ay~~lGd 1654 (1956)
|.-.++..|.++.+.|....|+..|..++...|-+-.+|..|+. ++....+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 44588899999999999999999999999988887766655544 3444456
Q ss_pred hHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC----chhhhhhcCcc----hhhhh
Q psy8682 1655 DPQAIAALSKCLSI-EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR----PSAYKADALPS----KLTRL 1725 (1956)
Q Consensus 1655 yeEALe~yeKALeL-dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd----~eay~~Ll~~~----Kl~e~ 1725 (1956)
.++|+.-++..+.. .|.+.-.-...|.++....++++|+..|+...+. +|- .+.|..++-.. ++.-+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn----DPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN----DPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc----CCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 67777777777776 6888878888999999999999999999999998 775 23333332111 11111
Q ss_pred H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1726 A-----------NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1726 a-----------~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
+ ...--+|+.|...++.++|+.+|++|++++|.. ..+|..+|.-|..+++...|+..|++|++++|
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~---~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY---LSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch---hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1 112235788888999999999999999999998 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1795 dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
.+..+|+.||.+|.-++-..=|+-+|++|++..|++...|..||.||.++++.++|+++|.+|+.....+..++..+|.+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccHHHHHHHHH
Q psy8682 1875 PRAVKEMSDSIWYSLR 1890 (1956)
Q Consensus 1875 ~~~lg~~seAIws~Lr 1890 (1956)
+..+++..+|...+-+
T Consensus 476 ye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 9999999998844443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-15 Score=165.10 Aligned_cols=204 Identities=15% Similarity=0.105 Sum_probs=145.2
Q ss_pred CccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI 1681 (1956)
Q Consensus 1602 ~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~ 1681 (1956)
...+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 33567888899999999999999999999999999888899999999999999999999999999998888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q psy8682 1682 CFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSI 1761 (1956)
Q Consensus 1682 aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~ 1761 (1956)
++...|++++|+..+++++.. .+. +.....+..+|.++...|++++|...+.+++...|.+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~----~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 168 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIED----PLY-------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR-- 168 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhc----ccc-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--
Confidence 888888888888888888765 111 1122234455666666666666666666666666555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1762 ~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
..++..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus 169 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 169 -PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555555666666666666666666665555555555555555555555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=181.67 Aligned_cols=236 Identities=14% Similarity=0.020 Sum_probs=181.9
Q ss_pred HHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy8682 1581 FSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660 (1956)
Q Consensus 1581 YeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe 1660 (1956)
.+.++.. +.+++...+.+|...+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 42 ~e~~i~~--~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 42 QEVILAR--LNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHH--HHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445554 56666555556665688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC
Q psy8682 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE 1740 (1956)
Q Consensus 1661 ~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG 1740 (1956)
.|+++++++|++..++.++|.++...|++++|++.++++++. +|+ ... ...+ ..+....+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~----~P~---~~~----------~~~~---~~l~~~~~ 179 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD----DPN---DPY----------RALW---LYLAESKL 179 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC---CHH----------HHHH---HHHHHccC
Confidence 999999999999999999999999999999999999999999 887 110 0011 12344578
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA-------LQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekA-------Lel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
++++|+..+.+++...+.. .+. .+.++...|+..++ ..++.+ .++.|....+|+++|.++..+|++
T Consensus 180 ~~~~A~~~l~~~~~~~~~~-----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 180 DPKQAKENLKQRYEKLDKE-----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred CHHHHHHHHHHHHhhCCcc-----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 8999999998877554332 121 34555566665443 233333 355566778899999999999999
Q ss_pred HHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHcC
Q psy8682 1814 EEAVEAYHTALQLSP-GFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1814 eEAie~yeKALeL~P-dnaeA~~~LA~ay~klG 1845 (1956)
++|+.+|+++++.+| ++.+..+.+.......+
T Consensus 253 ~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 253 DEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 999999999999886 66666665555544433
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-16 Score=188.39 Aligned_cols=273 Identities=16% Similarity=0.155 Sum_probs=235.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
+.+.....+..++..++|.+..+.++..++.+|-+..++-..-.++...|+..+-...-.+.++..|+.+..|+..|..|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 45688889999999999999999999999999988877665555888888888877777888888999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
...|++.+|.++|.++..+ +|. .+.+|...|..+...|..++|+.+|..|.++.|.. .
T Consensus 323 l~i~k~seARry~SKat~l----D~~---------------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~---h 380 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTL----DPT---------------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC---H 380 (611)
T ss_pred HHhcCcHHHHHHHHHHhhc----Ccc---------------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC---c
Confidence 9999999999999999988 666 44567788899999999999999999999998887 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-------cHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG-------FVRARYN 1836 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd-------naeA~~~ 1836 (1956)
.....+|.-|..+++++-|.+.|.+|+.+.|.++.++..+|.+.+..+.|.+|..+|+.++..-+. ....+.+
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 667778888888999999999999999999999999999999999999999999999998853221 3346889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1837 LGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1837 LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
||.++.+++++++|+.+|+++|.+.|.++.++..+|.++..+|+...|| +++.+++.+-+..
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~p~n 522 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI-DHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999999998888 8888888887765
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-15 Score=187.38 Aligned_cols=367 Identities=20% Similarity=0.176 Sum_probs=274.0
Q ss_pred hhhhhhchhhhhh--ccccccC--CCCCCCCcccccccccccCCCCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCC
Q psy8682 1464 GIHICGRQSYAER--NQCFCFG--PGKAQTGPLFSNGVASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGV 1539 (1956)
Q Consensus 1464 ~~~~~~~~~~ae~--~~c~~~~--p~~a~~~~lf~~a~aslgq~~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~ 1539 (1956)
++..||..+.|+. ..|.... |.+ +...++..++| +++++.+.+++....+..+.......
T Consensus 366 s~saag~~s~Av~ll~~~~~~~~~ps~-~s~~Lmasklc----------~e~l~~~eegldYA~kai~~~~~~~~----- 429 (799)
T KOG4162|consen 366 SYSAAGSDSKAVNLLRESLKKSEQPSD-ISVLLMASKLC----------IERLKLVEEGLDYAQKAISLLGGQRS----- 429 (799)
T ss_pred HHHHhccchHHHHHHHhhcccccCCCc-chHHHHHHHHH----------HhchhhhhhHHHHHHHHHHHhhhhhh-----
Confidence 4556677777777 5576666 555 66667777778 78899999999986654332210000
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcC
Q psy8682 1540 STSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQG 1619 (1956)
Q Consensus 1540 s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~G 1619 (1956)
.+...-.-.+.-++..+..... .....-....+++.. ++++.++++.||. +.|.++..|..++
T Consensus 430 -------~l~~~~~l~lGi~y~~~A~~a~----~~seR~~~h~kslqa--le~av~~d~~dp~----~if~lalq~A~~R 492 (799)
T KOG4162|consen 430 -------HLKPRGYLFLGIAYGFQARQAN----LKSERDALHKKSLQA--LEEAVQFDPTDPL----VIFYLALQYAEQR 492 (799)
T ss_pred -------hhhhhHHHHHHHHHHhHhhcCC----ChHHHHHHHHHHHHH--HHHHHhcCCCCch----HHHHHHHHHHHHH
Confidence 0011111122222222222110 122222345677777 9999999999887 9999999999999
Q ss_pred ChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1620 DLPSAILYLEAAAKQ-EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1620 dydEAIe~fekALel-dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leK 1698 (1956)
+.+.|..+.++++++ ..+++.+|..++.++...+++.+|+...+.+++..|+|.........+-...++.++|+..+..
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 999999999999999 4567999999999999999999999999999999999888777777777788899999888877
Q ss_pred HHhcCC------------------------CCCCC--chhhhhhcC---c--------chh-------------hhhHHH
Q psy8682 1699 KIRPGQ------------------------ESNPR--PSAYKADAL---P--------SKL-------------TRLANH 1728 (1956)
Q Consensus 1699 ALelg~------------------------e~dPd--~eay~~Ll~---~--------~Kl-------------~e~a~a 1728 (1956)
.+..-. ..+|. ...+..+.. . .++ ......
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 665510 00111 001111000 0 000 112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
+...+..+...+..++|..++.++-+++|.. +.+|+..|.++...|+..+|.+.|..|+.++|++..+...+|.++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLS---ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhh---HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 5567888888899999999999999998887 8899999999999999999999999999999999999999999999
Q ss_pred HCCChHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1809 NGNRPEEAVE--AYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1809 qlGryeEAie--~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
+.|+..-|.. .+..+++++|.+.++|+++|.++.++|+.++|.++|+.|+++++.+|.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9998888887 999999999999999999999999999999999999999999888774
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.1e-16 Score=187.25 Aligned_cols=273 Identities=21% Similarity=0.194 Sum_probs=236.8
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
.....+|.+.... .+..+.++|-++. -..+.+| ++...|+..+-..+-.+.++.+|+.+..|+..|..|...|+
T Consensus 254 ~y~~c~f~~c~ki--t~~lle~dpfh~~---~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 254 LYYGCRFKECLKI--TEELLEKDPFHLP---CLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHcChHHHHHHH--hHHHHhhCCCCcc---hHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC
Confidence 3344566666665 5555655554443 2444566 88899999988888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ 1734 (1956)
+.+|..+|.++..++|....+|...|..|...|..++|+.+|..|-++ -|. .-...+.+|.
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl----~~G---------------~hlP~LYlgm 388 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL----MPG---------------CHLPSLYLGM 388 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh----ccC---------------CcchHHHHHH
Confidence 999999999999999999999999999999999999999999999998 443 2223567899
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHH
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP----D---DSRLWNRLGASL 1807 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P----d---naeA~~nLG~ay 1807 (1956)
-|...++++-|.+.|.+|+.+.|.+ +.++..+|.+.+..+.|.+|..+|+.++..-+ . -...+.+||.++
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~D---plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSD---PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCc---chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999994322 1 235689999999
Q ss_pred HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccch
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEP 1875 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~ 1875 (1956)
.+++++++|+.+|+++|.+.|.+..++..+|.+|..+|+++.|+++|.+||.++|++.-+--.|+...
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876655555433
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=175.39 Aligned_cols=286 Identities=15% Similarity=0.149 Sum_probs=222.5
Q ss_pred CCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1600 NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
+|. +++-.+.+|..++..|++.+|+..|..|++.+|++..+++..|.+|..+|+-..|+..+.+.|++.|+...+....
T Consensus 34 ~~a-dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 34 SPA-DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 444 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCC----chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1680 SICFTNEACLHDALDTLKDKIRPGQESNPR----PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1680 A~aY~~lGdydEALe~leKALelg~e~dPd----~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
|.++.++|++++|...|++.+.. +|+ .+.+..+. +......+......+...|++..|+++....+++
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~----~~s~~~~~eaqskl~----~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH----EPSNGLVLEAQSKLA----LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc----CCCcchhHHHHHHHH----hHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 99999999999999999999999 775 22333332 1112222333445556677777777777777777
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH--
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA-- 1833 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA-- 1833 (1956)
.|-+ +..+...+.+|...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+....
T Consensus 185 ~~Wd---a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 185 QPWD---ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred Ccch---hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 7766 77777777777777777777777777777777777777777777777777777777777777777663221
Q ss_pred ------------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1834 ------------------------------------------------RYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1834 ------------------------------------------------~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
...+..|+..-|++.+|+....++|.++|++.
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence 22344566666778888888888888888888
Q ss_pred hchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1866 DGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1866 dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
+++..++..|.....|.++| ..+..|...-..
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI-~dye~A~e~n~s 373 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAI-HDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHH-HHHHHHHhcCcc
Confidence 88888888887777777777 555666555544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=194.56 Aligned_cols=251 Identities=12% Similarity=0.010 Sum_probs=212.5
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQ---------GDLPSAILYLEAAAKQEPDNAEVWLSLGISL 1649 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~---------GdydEAIe~fekALeldPdnaeAl~~LA~ay 1649 (1956)
+.+++|+.. |+++++++|+++. ++..+|.++... +++++|+..++++++++|+++.++..+|.++
T Consensus 275 ~~~~~A~~~--~~~Al~ldP~~a~----a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~ 348 (553)
T PRK12370 275 YSLQQALKL--LTQCVNMSPNSIA----PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLIN 348 (553)
T ss_pred HHHHHHHHH--HHHHHhcCCccHH----HHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 467788888 9999988877654 888888876643 3489999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH
Q psy8682 1650 AENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT 1729 (1956)
Q Consensus 1650 ~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ 1729 (1956)
...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++++++ +|. . ...+
T Consensus 349 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l----~P~---~------------~~~~ 409 (553)
T PRK12370 349 TIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL----DPT---R------------AAAG 409 (553)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCC---C------------hhhH
Confidence 99999999999999999999999999999999999999999999999999999 777 1 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQC-PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~-P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
..++.++...|++++|+..++++++.. |++ +.++..+|.++..+|++++|+..+.++....|....++..++..|.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~---~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDN---PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccC---HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334556777899999999999999886 666 8889999999999999999999999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
..|+ +|...+++.++...........++.+|.-.|+.+.|... +++.+.
T Consensus 487 ~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 9884 788878777664433333333488888888998888777 666554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-15 Score=162.29 Aligned_cols=205 Identities=16% Similarity=0.121 Sum_probs=186.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
.+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++. .|.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~-------- 97 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----NPN-------- 97 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC--------
Confidence 36789999999999999999999999999999999999999999999999999999999999998 555
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
....+.++|.++...|++++|+..+.+++...+.. .....+..+|.++...|++++|...+++++...|++.
T Consensus 98 -------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 98 -------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred -------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence 23457788999999999999999999999864322 2367889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
.++..+|.++...|++++|+..+++++...|.+...+..++.++...|+.++|..+.+.+....|
T Consensus 170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 170 ESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999888899999999999999999999999888776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-15 Score=177.34 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=186.8
Q ss_pred cCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEP----DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldP----dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEAL 1693 (1956)
.+..+.++..+.+++...| ..+..++.+|.+|...|++++|+..|+++++++|+++.+++.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3567889999999996443 337789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF 1773 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly 1773 (1956)
..|++++++ +|+ ...++.++|.++...|++++|++.++++++.+|++ +... ....+.
T Consensus 119 ~~~~~Al~l----~P~---------------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~---~~~~-~~~~l~ 175 (296)
T PRK11189 119 EAFDSVLEL----DPT---------------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND---PYRA-LWLYLA 175 (296)
T ss_pred HHHHHHHHh----CCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHH-HHHHHH
Confidence 999999999 777 34567889999999999999999999999999998 4211 112234
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH-------HhhCCCcHHHHHHHHHHHHHcCC
Q psy8682 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA-------LQLSPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1774 ~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA-------LeL~PdnaeA~~~LA~ay~klGd 1846 (1956)
...+++++|+..|.+++...+.. .|. .+.++..+|+..++ ..+..+ +++.|...++|+++|.++.++|+
T Consensus 176 ~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~ 251 (296)
T PRK11189 176 ESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD 251 (296)
T ss_pred HccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 56789999999998877554322 222 46666777777554 233333 35667778899999999999999
Q ss_pred HHHHHHHHHHHHHhcC-CChhchhccccc
Q psy8682 1847 NTQAVEHFLTALNQQA-ATHDGLTPHGLE 1874 (1956)
Q Consensus 1847 yEEAie~yekALeLdP-dn~dA~~~LG~l 1874 (1956)
+++|+.+|++|++++| ++.+..+.+..+
T Consensus 252 ~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 252 LDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 9999999999999997 666666555443
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-15 Score=186.85 Aligned_cols=351 Identities=18% Similarity=0.170 Sum_probs=216.9
Q ss_pred chhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHH-----HHHHHHHHHHHhcCCCCCChhhhhh--
Q psy8682 1507 NTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWN-----ELNSHWKEMTESLGSGESLPHQWFS-- 1579 (1956)
Q Consensus 1507 n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWd-----kLq~~we~l~kr~~s~~~~a~~WL~-- 1579 (1956)
.+..+.++|-.|+..|+.+.... ++..+.+.+ +..-+||. .+...|.....-+. ..+.+..-|+
T Consensus 172 ~i~ynkkdY~~al~yyk~al~in---p~~~aD~rI-----gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~ 242 (1018)
T KOG2002|consen 172 RIAYNKKDYRGALKYYKKALRIN---PACKADVRI-----GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEV 242 (1018)
T ss_pred HHHhccccHHHHHHHHHHHHhcC---cccCCCccc-----hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHH
Confidence 56778889999999977644333 222221111 11345665 44445555544331 1112222233
Q ss_pred --------hHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q psy8682 1580 --------DFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD---NAEVWLSLGIS 1648 (1956)
Q Consensus 1580 --------dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPd---naeAl~~LA~a 1648 (1956)
.|..++.. +.+++...+.||. ++..++..++-.|+|..+..+...++..... -++.++.+|.+
T Consensus 243 ~l~~~d~~s~~~~~~l--l~~ay~~n~~nP~----~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 243 DLNFNDSDSYKKGVQL--LQRAYKENNENPV----ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHccchHHHHHHHHH--HHHHHhhcCCCcH----HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 33455555 7788888888887 8899999999999999999999999876533 35679999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCch--------hhhhhcCc
Q psy8682 1649 LAENEQDPQAIAALSKCLSIEPKN-LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS--------AYKADALP 1719 (1956)
Q Consensus 1649 y~~lGdyeEALe~yeKALeLdPdn-aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~e--------ay~~Ll~~ 1719 (1956)
|..+|+|++|..+|.++++.++++ .-.++.+|..|...|+++.|..+|++.+.. .|+.. .|......
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhh
Confidence 999999999999999999999888 667889999999999999999999999988 77610 01110000
Q ss_pred c---------------hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1720 S---------------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ--SIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1720 ~---------------Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n--~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
. ..+....++..+|.++....-+. ++.+|..|+..--.. .+.+.+++++|..++..|++.+|
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence 0 01334445555555554333332 355555555321110 13355566666666666666666
Q ss_pred HHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1783 VDCFRSALQV-----RPDD-----SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVE 1852 (1956)
Q Consensus 1783 ie~fekALel-----~Pdn-----aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie 1852 (1956)
...|..|+.. +++. ....+++|.++...++++.|.+.|...++..|.+..++..||......+...+|..
T Consensus 472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHH
Confidence 6666666554 1111 12355666666666666666666666666666666666666655555556666666
Q ss_pred HHHHHHHhcCCChhchhccccchhh
Q psy8682 1853 HFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1853 ~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
.+..++..+..+++++..+|.++..
T Consensus 552 ~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 552 LLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHh
Confidence 6666666666666666666655543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=186.42 Aligned_cols=261 Identities=19% Similarity=0.163 Sum_probs=122.9
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+.-.+++++|+.. +.+..... ..|. +...|..+|......++++.|+..|++++..++.++..+..++.+ ...+
T Consensus 17 ~~~~~~~~~~Al~~--L~~~~~~~-~~~~-~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 17 LLYQRGDYEKALEV--LKKAAQKI-APPD-DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc--cccccccc-cccc-ccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 34445678888877 54433221 0122 455888899999999999999999999999999988888888888 7999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHH
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFR 1733 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA 1733 (1956)
++++|+.++.++.+..+ ++..+..+..++...++++++...++++... .+ .+.....+..+|
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~----~~-------------~~~~~~~~~~~a 153 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEEL----PA-------------APDSARFWLALA 153 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-----T----------------T-HHHHHHHH
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc----cC-------------CCCCHHHHHHHH
Confidence 99999999999988664 4666777888899999999999999998765 11 123556678899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
.++...|+.++|+.+|+++++.+|++ ..+...++.++...|+++++...+....+..|.++..+..+|.++..+|++
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~---~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDD---PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999 999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
++|+.+|+++++.+|+++..+..+|.++...|+.++|..++++++..
T Consensus 231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 231 EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999998764
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=190.90 Aligned_cols=277 Identities=14% Similarity=0.183 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn-aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~ 1685 (1956)
.++..|.+.+..|+|..|+.+|++++.++|.. ++....+|.|+.++|+.+.|+..|.++++++|.++.++..||.+-..
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~ 245 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLN 245 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 45555555555555555555555555555432 33444455555555555555555555555555555555444444333
Q ss_pred cC---CHHHHHHHHHHHHhcCCCCCCCchhhhhhcC-------------------------cchhhhhHHHHHHHHHHHH
Q psy8682 1686 EA---CLHDALDTLKDKIRPGQESNPRPSAYKADAL-------------------------PSKLTRLANHTLTFRSPLS 1737 (1956)
Q Consensus 1686 lG---dydEALe~leKALelg~e~dPd~eay~~Ll~-------------------------~~Kl~e~a~a~lnLA~ay~ 1737 (1956)
.. .+..++..+.++... ++. ...+.. .......+..++.+|.+|.
T Consensus 246 ~~d~~s~~~~~~ll~~ay~~----n~~---nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 246 FNDSDSYKKGVQLLQRAYKE----NNE---NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred ccchHHHHHHHHHHHHHHhh----cCC---CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 22 233444444444444 222 000000 0001123444555555555
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----Ch
Q psy8682 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN----RP 1813 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG----ry 1813 (1956)
.+|++++|..+|.++++.++++ ....++.+|.+|+..|+++.|+.+|+++++..|++.++...||.+|...+ ..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 5555555555555555555443 12334455555555555555555555555555555555555555554443 34
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCChhchhccccchhhhcccHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ-----QAATHDGLTPHGLEPRAVKEMSDSIWYS 1888 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL-----dPdn~dA~~~LG~l~~~lg~~seAIws~ 1888 (1956)
+.|..+..++++..|.+.++|..+|.++....-+.. +.+|..|+.+ .+=-++.++++|.+++..|++..|. ..
T Consensus 397 d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~-~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL-EH 474 (1018)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH-HH
Confidence 445555555555555555555555555443332222 5555555422 1222344555555555555554444 44
Q ss_pred HHhccc
Q psy8682 1889 LRGFHP 1894 (1956)
Q Consensus 1889 Lr~Al~ 1894 (1956)
+..|+.
T Consensus 475 f~~A~~ 480 (1018)
T KOG2002|consen 475 FKSALG 480 (1018)
T ss_pred HHHHhh
Confidence 444433
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=173.23 Aligned_cols=244 Identities=17% Similarity=0.152 Sum_probs=226.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACL 1689 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdy 1689 (1956)
.+|.+|+..|-+.+|...++.++...| .++.+..|+.+|.+.++...|+..|...++..|.+...+..+|.++..++++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 589999999999999999999998876 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q psy8682 1690 HDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGL 1769 (1956)
Q Consensus 1690 dEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~L 1769 (1956)
++|+++|+.+++. +|. .. ++...+|..|+..++.+-|+.+|++.+.+.-.+ ++.++++
T Consensus 307 ~~a~~lYk~vlk~----~~~---nv------------EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s---peLf~Ni 364 (478)
T KOG1129|consen 307 EDALQLYKLVLKL----HPI---NV------------EAIACIAVGYFYDNNPEMALRYYRRILQMGAQS---PELFCNI 364 (478)
T ss_pred HHHHHHHHHHHhc----CCc---cc------------eeeeeeeeccccCCChHHHHHHHHHHHHhcCCC---hHHHhhH
Confidence 9999999999999 666 22 223446788899999999999999999999888 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q psy8682 1770 GVLFNLSDEYDKAVDCFRSALQVRP---DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1770 G~ly~~lGdyeEAie~fekALel~P---dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGd 1846 (1956)
|.+.+..++++-++..|++|+.... .-+++|+++|.+....|++..|.++|+-++..++++.+++.+||.+-.+.|+
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 9999999999999999999998754 2468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1847 NTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1847 yEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.++|..++..|-.+.|+-.+..++++.+-.
T Consensus 445 i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~ 474 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVMPDMAEVTTNLQFMSV 474 (478)
T ss_pred hHHHHHHHHHhhhhCccccccccceeEEee
Confidence 999999999999999999999888887543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=176.96 Aligned_cols=294 Identities=14% Similarity=0.086 Sum_probs=221.7
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA-EVWLSLGISLAENEQDP 1656 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdna-eAl~~LA~ay~~lGdye 1656 (1956)
-++|+.|... ..++.+..+. ....++..|.++..+|+++.|..+|.++.+..|++. .+....+.++...|+++
T Consensus 97 ~g~~~~A~~~--l~~~~~~~~~----~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 97 EGDYAKAEKL--IAKNADHAAE----PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred CCCHHHHHHH--HHHHhhcCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 4567777776 5555544332 344777889999999999999999999999999875 46666799999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH
Q psy8682 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL 1736 (1956)
Q Consensus 1657 EALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay 1736 (1956)
+|+..++++++..|+++.++..++.+|...|++++|.+.+.+..+. .... ..............+
T Consensus 171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~----~~~~-----------~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA----GLFD-----------DEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc----CCCC-----------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877 2110 000111111222222
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHCCCh
Q psy8682 1737 SSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLW--NRLGASLANGNRP 1813 (1956)
Q Consensus 1737 ~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~--~nLG~ay~qlGry 1813 (1956)
...+..+++.+.+.++....|.. ...+.++..+|..+...|++++|...++++++..|++.... ..........++.
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh
Confidence 34444555566777777777731 11278888888888999999999999999999888876532 2233333445778
Q ss_pred HHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhcCCChhchhccccchhhhcccHHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFV--RARYNLGITCVHLGANTQAVEHFL--TALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSL 1889 (1956)
Q Consensus 1814 eEAie~yeKALeL~Pdna--eA~~~LA~ay~klGdyEEAie~ye--kALeLdPdn~dA~~~LG~l~~~lg~~seAIws~L 1889 (1956)
+.+++.++++++..|+++ ..+..+|.++.+.|++++|.++|+ .+++..|++.. +..+|.++...|+..++. .++
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~-~~~ 393 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAA-AMR 393 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHH-HHH
Confidence 888889999999899888 788888999999999999999998 57778887665 558888888888876665 666
Q ss_pred Hhccc
Q psy8682 1890 RGFHP 1894 (1956)
Q Consensus 1890 r~Al~ 1894 (1956)
++++.
T Consensus 394 ~~~l~ 398 (409)
T TIGR00540 394 QDSLG 398 (409)
T ss_pred HHHHH
Confidence 65543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=174.67 Aligned_cols=293 Identities=15% Similarity=0.193 Sum_probs=204.0
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
.++.-+++|++|+.. -.+..++.|.-|. .|..+|.++.-.|+|++|+..|.+.|+.+|++...+.+++.++...
T Consensus 44 aa~a~~~~~~~al~d--a~k~~~l~p~w~k----gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~ 117 (539)
T KOG0548|consen 44 AAYASLGSYEKALKD--ATKTRRLNPDWAK----GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED 117 (539)
T ss_pred HHHHHHhhHHHHHHH--HHHHHhcCCchhh----HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH
Confidence 456667778887776 5666777666655 8888888888888888888888888888888777666666655211
Q ss_pred CC---------------------hHHHHHHHHHHHHh---C---------------------------------------
Q psy8682 1653 EQ---------------------DPQAIAALSKCLSI---E--------------------------------------- 1669 (1956)
Q Consensus 1653 Gd---------------------yeEALe~yeKALeL---d--------------------------------------- 1669 (1956)
-. +-..-..|...++. +
T Consensus 118 ~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~ 197 (539)
T KOG0548|consen 118 YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASM 197 (539)
T ss_pred HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCC
Confidence 00 00000001100000 0
Q ss_pred --CC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc------
Q psy8682 1670 --PK---------------------NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS------ 1720 (1956)
Q Consensus 1670 --Pd---------------------naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~------ 1720 (1956)
|. .......+|+..+...++..|++.|..++.+ + ....|.......
T Consensus 198 ~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el----~-~~it~~~n~aA~~~e~~~ 272 (539)
T KOG0548|consen 198 AEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL----A-TDITYLNNIAAVYLERGK 272 (539)
T ss_pred CCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH----h-hhhHHHHHHHHHHHhccH
Confidence 00 0012345566666666666666666666665 3 111111000000
Q ss_pred --------------------hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C-------------------
Q psy8682 1721 --------------------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS--Q------------------- 1759 (1956)
Q Consensus 1721 --------------------Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~--n------------------- 1759 (1956)
.....+.+...+|..|...++++.|+.+|.+++..... .
T Consensus 273 ~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~ 352 (539)
T KOG0548|consen 273 YAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAY 352 (539)
T ss_pred HHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 00123334455788899999999999999999765432 1
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHH
Q psy8682 1760 --SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837 (1956)
Q Consensus 1760 --~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~L 1837 (1956)
+....--...|..++..|+|..|+..|.+|+..+|+++.+|.+.|.||.++|.+..|+...+++++++|++..+|...
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 001223344588899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
|.++..+.+|++|++.|+++++++|++.++.-.+..+..
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999998876655555444
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-14 Score=178.36 Aligned_cols=253 Identities=17% Similarity=0.155 Sum_probs=214.7
Q ss_pred ccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1598 EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ--------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1598 p~NP~~daeall~LG~aylk~GdydEAIe~fekALel--------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
...|. ...+...+|..|..+|+|+.|+..++.+++. .|.-......+|.+|..++++.+|+..|++|+.+.
T Consensus 193 ~~~P~-~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 193 DEDPE-RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred cCCch-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34454 5567777999999999999999999999988 45555566679999999999999999999999863
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCC
Q psy8682 1670 --------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREI 1741 (1956)
Q Consensus 1670 --------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGd 1741 (1956)
|..+.++.+||.+|...|++++|..++++++++ +....... .++.+..+.+++.++...++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------~~~~~~~~-~~~v~~~l~~~~~~~~~~~~ 340 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------YEKLLGAS-HPEVAAQLSELAAILQSMNE 340 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------HHHhhccC-hHHHHHHHHHHHHHHHHhcc
Confidence 445568999999999999999999999999999 66543222 57788888999999999999
Q ss_pred HHHHHHHHHHHHHhCC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Q psy8682 1742 HQQVLSLYLNAARQCP-----SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR--------PDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1742 yeEAle~LekALel~P-----~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~--------PdnaeA~~nLG~ay~ 1808 (1956)
+++|..++++++++.- .+...+..+.+||.+|..+|+|++|.+.|++|+.+. +.....+.++|..|.
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 9999999999988743 112346789999999999999999999999999875 223567889999999
Q ss_pred HCCChHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1809 NGNRPEEAVEAYHTALQL-------SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL-------~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
+.+++.+|...|.+++.+ .|+....+.+||.+|..+|++++|+++.++++....
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999999999999999875 345567899999999999999999999999986543
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.1e-14 Score=177.45 Aligned_cols=303 Identities=17% Similarity=0.172 Sum_probs=226.8
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
+++++|... +..++..+|.++. +|+.+|.+|..+|+..+|....-.|-.++|.+.+.|..++....++|++.+|
T Consensus 153 g~~eeA~~i--~~EvIkqdp~~~~----ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 153 GDLEEAEEI--LMEVIKQDPRNPI----AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred CCHHHHHHH--HHHHHHhCccchh----hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 678888887 7788877777666 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc--------h---------
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS--------K--------- 1721 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~--------K--------- 1721 (1956)
.-+|.+|++.+|.+.......+.+|.+.|+...|...|.+++.. .|. ..+....... .
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~----~p~-~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL----DPP-VDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh----CCc-hhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999 773 1111111000 0
Q ss_pred ----------hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------------C--CCC-CCCHHH-
Q psy8682 1722 ----------LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ----------------------C--PSQ-SIDPDV- 1765 (1956)
Q Consensus 1722 ----------l~e~a~a~lnLA~ay~~lGdyeEAle~LekALel----------------------~--P~n-~~~a~a- 1765 (1956)
.......+..++.+++....++.|.......... . |+. .....+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 0000111233445555555555555554444330 0 000 011112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHH
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRP-DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG-FVRARYNLGITCVH 1843 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~P-dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd-naeA~~~LA~ay~k 1843 (1956)
+..++.+..+.++..+++..+..--...+ +++..+..++.+|...|++.+|+.+|..+....+. +..+|+.+|.||..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 33333333333444444433322211112 35678999999999999999999999999886554 56799999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhcc
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFH 1893 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al 1893 (1956)
+|.+++|+++|++++.+.|++.++...|+.++.++|+.++++ .++....
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal-EtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKAL-ETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH-HHHhccc
Confidence 999999999999999999999999999999999999998776 6666544
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=176.16 Aligned_cols=316 Identities=15% Similarity=0.153 Sum_probs=240.4
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.--++|+.|+.. |..++.++|.|.. .+-++..+|...|+|++|+..-.+.++++|+-+..|..+|..+.-+|+|
T Consensus 13 ~s~~d~~~ai~~--~t~ai~l~p~nhv----lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 13 FSSGDFETAIRL--FTEAIMLSPTNHV----LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred cccccHHHHHHH--HHHHHccCCCccc----hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 335789999999 9999999988876 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHH---hc---------
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACL---------------------HDALDTLKDKI---RP--------- 1702 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdy---------------------dEALe~leKAL---el--------- 1702 (1956)
++|+..|.+.|+.+|++...+.+|+.++...... -..-..|...+ +.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999999999999999999988887322000 00001111111 10
Q ss_pred ----------------------------CCCCCCC---chhhhhhcCc---chhhhhHHHHHHHHHHHHhcCCHHHHHHH
Q psy8682 1703 ----------------------------GQESNPR---PSAYKADALP---SKLTRLANHTLTFRSPLSSREIHQQVLSL 1748 (1956)
Q Consensus 1703 ----------------------------g~e~dPd---~eay~~Ll~~---~Kl~e~a~a~lnLA~ay~~lGdyeEAle~ 1748 (1956)
.....|. ......+-.. .+....+.....+|.......++..|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0011121 1111111111 11233455566777777888888888888
Q ss_pred HHHHHHhCCCC-C-------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1749 YLNAARQCPSQ-S-------------------------------------IDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1749 LekALel~P~n-~-------------------------------------~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
|..++.++ .+ . ........+|..|..+++++.|+.+|++++
T Consensus 247 y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 247 YAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 87777766 32 0 012233345667777888899999998887
Q ss_pred HhC--------------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1791 QVR--------------------------PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1791 el~--------------------------PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.-. |.-...-..-|..++..|+|..|+..|.+||..+|+++..|.++|.||.++
T Consensus 326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 643 222233445689999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1845 GANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
|.+..|+...+++++++|++..+|...|.++..+.++..++ .++..++..-+..
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~~ 459 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPSN 459 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchh
Confidence 99999999999999999999999999999999999998887 7777777776554
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=164.47 Aligned_cols=266 Identities=14% Similarity=0.131 Sum_probs=205.6
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
-++|.+|+.. |.+|+..+|++-. ++|.+|.+|+..|+-..|+..+.+++++.|+...+....|.++.++|++++
T Consensus 51 ~~Q~sDALt~--yHaAve~dp~~Y~----aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 51 RGQLSDALTH--YHAAVEGDPNNYQ----AIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred hhhHHHHHHH--HHHHHcCCchhHH----HHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 4578888888 9999988777655 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCH---HHH------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchh
Q psy8682 1658 AIAALSKCLSIEPKNL---EAL------------MAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKL 1722 (1956)
Q Consensus 1658 ALe~yeKALeLdPdna---eAl------------~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl 1722 (1956)
|...|+..++.+|.+. +++ ......+...|++..|+++..+.+++ .|=
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi----~~W------------- 187 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI----QPW------------- 187 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----Ccc-------------
Confidence 9999999999998543 222 22334455678999999999999988 443
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----- 1797 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna----- 1797 (1956)
.+..+...+.+|...|+...|+.-++.+-++..++ ...++.++.+++..|+.+.++...+++|+++|++-
T Consensus 188 --da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn---Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 188 --DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN---TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred --hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 22333444555555555555555555555555555 55555555555555555555555555555555432
Q ss_pred -----------------------------------------H----HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH
Q psy8682 1798 -----------------------------------------R----LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832 (1956)
Q Consensus 1798 -----------------------------------------e----A~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae 1832 (1956)
. ....+..|+..-|++.+|++.+.+++.++|+++.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 1 1223566677788999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
++...|.+|.....|+.|+..|++|++.++++..+.-.+
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 999999999999999999999999999999988765443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-13 Score=166.97 Aligned_cols=269 Identities=15% Similarity=0.095 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVW-LSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl-~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~ 1685 (1956)
.+...+......|+++.|..+|.++.+.+|++..+. ...+.++...|++++|+..++++.+.+|+++.++..++.+|..
T Consensus 120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 120 NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344456666999999999999999999999885443 4559999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCC-chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd-~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
.|++++|++.+.+..+. .+. ......+. ..++..+........+-+...++++...+..|++ +.
T Consensus 200 ~gdw~~a~~~l~~l~k~----~~~~~~~~~~l~--------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~---~~ 264 (398)
T PRK10747 200 TGAWSSLLDILPSMAKA----HVGDEEHRAMLE--------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ---VA 264 (398)
T ss_pred HHhHHHHHHHHHHHHHc----CCCCHHHHHHHH--------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC---HH
Confidence 99999999999998877 222 00000000 0111221222222223333333333333334444 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
+...+|..+...|+.++|...++++++. +.++.+...++.+ ..++++++++..++.++..|+++..+..+|.++...
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 6777777777777777777777777763 3344433333332 336777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhcccc
Q psy8682 1845 GANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l 1895 (1956)
|++++|.++|+++++..|++.. +..++.++...|+..++. .+++.++.+
T Consensus 342 ~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~-~~~~~~l~~ 390 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAA-AMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence 7777777777777777776443 445666666667765554 555555443
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.3e-14 Score=164.62 Aligned_cols=283 Identities=16% Similarity=0.149 Sum_probs=237.2
Q ss_pred chhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHh
Q psy8682 1507 NTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQR 1586 (1956)
Q Consensus 1507 n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs 1586 (1956)
..+-..++++.|+++.+.|.+.+....+..+ ..|-.. .+.. + -.++.+|.+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa----------------~nl~~l--~flq-g----------gk~~~~aqq 477 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAA----------------NNLCAL--RFLQ-G----------GKDFADAQQ 477 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHh----------------hhhHHH--HHHh-c----------ccchhHHHH
Confidence 3456678999999999999887743322111 001000 0000 0 124445554
Q ss_pred chhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy8682 1587 SSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCL 1666 (1956)
Q Consensus 1587 ~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKAL 1666 (1956)
. -+.++.++.-|+ .++.+.|.+.+..|++++|...|++++..+....++++++|..+..+|+.++|+++|-+.-
T Consensus 478 y--ad~aln~dryn~----~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 478 Y--ADIALNIDRYNA----AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred H--HHHHhcccccCH----HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 4 445565554444 4899999999999999999999999999998899999999999999999999999999988
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1667 SIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1667 eLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
.+--++.++++.++.+|..+.+..+|++.+.++..+ -|+ .+..+..||.+|-+.|+-.+|.
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~sl----ip~---------------dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL----IPN---------------DPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc----CCC---------------CHHHHHHHHHHhhcccchhhhh
Confidence 888899999999999999999999999999999888 454 4556678999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+++-...+..|-+ ..+.-.||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|...|+..-..
T Consensus 613 q~~ydsyryfp~n---ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 613 QCHYDSYRYFPCN---IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhcccccCcc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999998 8888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCC
Q psy8682 1827 SPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGd 1846 (1956)
.|.+.+.+..|..+.-.+|-
T Consensus 690 fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccchHHHHHHHHHhccccc
Confidence 99999999999888887773
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=153.01 Aligned_cols=209 Identities=16% Similarity=0.072 Sum_probs=170.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+.+.+.+|..|+..|++..|...++++|+.+|++..+|..+|.+|...|+.+.|.+.|++|++++|++.+++++.|..+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
+.+|++++|...|++++.. |. | +..+.++.|+|.|..+.|+++.|..+|+++++++|+. +
T Consensus 114 C~qg~~~eA~q~F~~Al~~-----P~---Y---------~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~---~ 173 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-----PA---Y---------GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF---P 173 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-----CC---C---------CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC---C
Confidence 9999999999999999975 55 3 2344566777777777777777777777777777777 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae 1832 (1956)
.....++..++..|+|..|..++++.....+-.++.+.....+-...|+-+.|-++=.+.....|...+
T Consensus 174 ~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 174 PALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 677777777777777777777777766666666666655556666667766666666666566665443
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=162.34 Aligned_cols=275 Identities=17% Similarity=0.161 Sum_probs=234.1
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQG--DLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~G--dydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.++|+.|++. -+.+ ...+......+..++...++.+| ++.+|..+...++..+..++.++.+.|.+.+..|++
T Consensus 432 ~~d~~~aiei---lkv~--~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 432 NGDIEGAIEI---LKVF--EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred ccCHHHHHHH---HHHH--HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 4456666654 1222 22232223334445555555543 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
++|.+.|+.++.-+....++++++|..+..+|+.++|+++|-+.-.+ +...+..++.++.+
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-------------------l~nn~evl~qiani 567 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-------------------LLNNAEVLVQIANI 567 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHH
Confidence 99999999999999888999999999999999999999999887665 34567788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
|..+.+..+|++++.++..+-|++ +.++..||.+|-+.|+-.+|.+++-...+..|-+.+..-.||..|....-+++
T Consensus 568 ye~led~aqaie~~~q~~slip~d---p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPND---PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCC---HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhc
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVK 1879 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg 1879 (1956)
|+.+|++|--+.|+...-...++.|+.+.|+|..|.+.|+..-+..|.+.+.+..+-.+...+|
T Consensus 645 ai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 645 AINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 9999999999999988888889999999999999999999999999998887665544443333
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=162.78 Aligned_cols=261 Identities=13% Similarity=0.064 Sum_probs=208.2
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.-.++++.+... +.++.+..|++. .......+..+...|++++|...++++++..|+++.++..++.++...|++
T Consensus 129 ~~~g~~~~A~~~--l~~a~~~~p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 129 QQRGDEARANQH--LEEAAELAGNDN---ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHCCCHHHHHHH--HHHHHHhCCcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 344677888877 777765554432 234555699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALM----AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLT 1731 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~----~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ln 1731 (1956)
++|++.+.+.++....+...+. ....-+...+..+++.+.+.++... .|. +.+.....+..
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~----~p~-----------~~~~~~~l~~~ 268 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN----QPR-----------HRRHNIALKIA 268 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----CCH-----------HHhCCHHHHHH
Confidence 9999999999987554443322 2222223444555556677777766 443 12345677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV--QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS--RLWNRLGASL 1807 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~~~a~a--~~~LG~ly~~lGdyeEAie~fekALel~Pdna--eA~~nLG~ay 1807 (1956)
++..+...|++++|.+.++++++..|++ ... ...........++.+++++.++++++..|+++ .+...+|.++
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~---~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDD---RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL 345 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCc---ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 9999999999999999999999999998 321 13333444456889999999999999999999 8899999999
Q ss_pred HHCCChHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1808 ANGNRPEEAVEAYH--TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1808 ~qlGryeEAie~ye--KALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
.+.|++++|.++|+ .+++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus 346 ~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999 57778888765 559999999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.7e-14 Score=160.25 Aligned_cols=261 Identities=17% Similarity=0.182 Sum_probs=225.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1614 EKLRQGDLPSAILYLEAAAKQE---PD-------NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1614 aylk~GdydEAIe~fekALeld---Pd-------naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
+++...+...|-......++.+ |. +..--..+|.||+++|.+.+|.+.++.+++..| .++.+..|+.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 3445556666665555554432 11 122335799999999999999999999999765 567888999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
....+...|+..+.+.++. .|. .......+|.++..++++++|.++|+.+++.+|.+ .
T Consensus 267 ~ridQP~~AL~~~~~gld~----fP~---------------~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n---v 324 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDS----FPF---------------DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN---V 324 (478)
T ss_pred HHhccHHHHHHHHhhhhhc----CCc---------------hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc---c
Confidence 9999999999999999988 555 44455678999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--C-cHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP--G-FVRARYNLGIT 1840 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P--d-naeA~~~LA~a 1840 (1956)
++...+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.|.+..++++-++..|++|+.... + -.++|++||.+
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence 78888889999999999999999999999999999999999999999999999999999998643 3 46799999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1841 CVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1841 y~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
....|++.-|..+|+-+|.-+|++.++++++|.+..+.|+..++- +.|..|...++.
T Consensus 405 aV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar-sll~~A~s~~P~ 461 (478)
T KOG1129|consen 405 AVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR-SLLNAAKSVMPD 461 (478)
T ss_pred EEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH-HHHHHhhhhCcc
Confidence 999999999999999999999999999999999999999997765 888888777765
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=169.27 Aligned_cols=295 Identities=17% Similarity=0.145 Sum_probs=230.2
Q ss_pred hccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEAL 1676 (1956)
Q Consensus 1597 ~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl 1676 (1956)
.+.++...++....+|..+++..+|.+|+..|..|++..|+++..|...+.+++..+++++|.-..++.++++|.....+
T Consensus 41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~ 120 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ 120 (486)
T ss_pred ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc
Confidence 44555557788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCCCchhhhhhcCcc-hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy8682 1677 MAISICFTNEACLHDALDTLKDKIRP-GQESNPRPSAYKADALPS-KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754 (1956)
Q Consensus 1677 ~~LA~aY~~lGdydEALe~leKALel-g~e~dPd~eay~~Ll~~~-Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALe 1754 (1956)
...+.++..+++..+|.+.++..-.. ....-|. +..+.... ..|....+.+..+.++...|++++|...--..++
T Consensus 121 ~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~---~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 121 LREGQCHLALSDLIEAEEKLKSKQAYKAANALPT---LEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred cchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhh---hhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 99999999999888888776632100 0000011 11111110 0133344555667888888888888888888888
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHCCChHHHHHHHHH
Q psy8682 1755 QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS------------RLWNRLGASLANGNRPEEAVEAYHT 1822 (1956)
Q Consensus 1755 l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna------------eA~~nLG~ay~qlGryeEAie~yeK 1822 (1956)
+++.+ ..+++..|.+++..++.+.|+..|+++|.++|+.. ..+..-|.-.++.|+|.+|.++|..
T Consensus 198 ld~~n---~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 198 LDATN---AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred cccch---hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 88887 88888888888888888888888888888888754 3455667778888888888888888
Q ss_pred HHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1823 ALQLSPGF----VRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1823 ALeL~Pdn----aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
+|.++|++ +..|.++|.+..++|+.++|+...+.|+.++|....++..+|.++..++++.+++ .++..|......
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV-~d~~~a~q~~~s 353 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV-EDYEKAMQLEKD 353 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccc
Confidence 88888875 4467788888888888888888888888888888888888888888888887777 556666555444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=157.29 Aligned_cols=208 Identities=12% Similarity=0.035 Sum_probs=182.5
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACL--HD 1691 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdy--dE 1691 (1956)
+...+++++|+..+.++++++|++..+|..++.++..+| ++++|+..++++++.+|++..+|..++.++...|.. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 445678899999999999999999999999999999998 689999999999999999999999999999888874 78
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ 1771 (1956)
++.+++++++. +|+ ...++...+.++...|++++|++++.++++.+|.+ ..+|+.++.
T Consensus 127 el~~~~kal~~----dpk---------------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N---~sAW~~R~~ 184 (320)
T PLN02789 127 ELEFTRKILSL----DAK---------------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN---NSAWNQRYF 184 (320)
T ss_pred HHHHHHHHHHh----Ccc---------------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc---hhHHHHHHH
Confidence 89999999999 776 44567778888999999999999999999999998 889999998
Q ss_pred HHHHc---CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy8682 1772 LFNLS---DEY----DKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGIT 1840 (1956)
Q Consensus 1772 ly~~l---Gdy----eEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~a 1840 (1956)
++... |.+ ++++.+..+++.++|++..+|+.++.++.. +++..+|+..+.+++...|.+..++..|+.+
T Consensus 185 vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 264 (320)
T PLN02789 185 VITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDL 264 (320)
T ss_pred HHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHH
Confidence 88766 333 478888889999999999999999999988 4567789999999999899999999999999
Q ss_pred HHHc
Q psy8682 1841 CVHL 1844 (1956)
Q Consensus 1841 y~kl 1844 (1956)
|...
T Consensus 265 ~~~~ 268 (320)
T PLN02789 265 LCEG 268 (320)
T ss_pred HHhh
Confidence 9763
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-13 Score=170.03 Aligned_cols=246 Identities=13% Similarity=0.077 Sum_probs=206.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy8682 1635 EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--------EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQES 1706 (1956)
Q Consensus 1635 dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL--------dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~ 1706 (1956)
.|.-..+...+|..|...|+|++|+..++.|++. .|.-......+|.+|..++++++|+.+|++|+.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i---- 270 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI---- 270 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----
Confidence 4666677888999999999999999999999998 5666666777999999999999999999999998
Q ss_pred CCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1707 NPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS-----QSIDPDVQNGLGVLFNLSDEYDK 1781 (1956)
Q Consensus 1707 dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~-----n~~~a~a~~~LG~ly~~lGdyeE 1781 (1956)
........ .+..+.++.+||.+|...|++++|..++++|+++... .......+..++.++..++++++
T Consensus 271 ------~e~~~G~~-h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee 343 (508)
T KOG1840|consen 271 ------REEVFGED-HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE 343 (508)
T ss_pred ------HHHhcCCC-CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH
Confidence 55554333 6788899999999999999999999999999887432 11235578889999999999999
Q ss_pred HHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHcC
Q psy8682 1782 AVDCFRSALQVR-----P---DDSRLWNRLGASLANGNRPEEAVEAYHTALQLS--------PGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1782 Aie~fekALel~-----P---dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~--------PdnaeA~~~LA~ay~klG 1845 (1956)
|+.++++++++. + .-+..+.+||.+|..+|++++|.++|++|+++. +.....+.+||..|.+++
T Consensus 344 a~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k 423 (508)
T KOG1840|consen 344 AKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK 423 (508)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc
Confidence 999999999863 2 335789999999999999999999999999864 234567899999999999
Q ss_pred CHHHHHHHHHHHHHhc----CCC---hhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1846 ANTQAVEHFLTALNQQ----AAT---HDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1846 dyEEAie~yekALeLd----Pdn---~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
++.+|...|.++..+. |++ ...+.+|+.+|..+|++++++ .+...+
T Consensus 424 ~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~ 476 (508)
T KOG1840|consen 424 KYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKV 476 (508)
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHH
Confidence 9999999999998764 334 457889999999999998776 444443
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-13 Score=168.90 Aligned_cols=346 Identities=14% Similarity=0.089 Sum_probs=242.4
Q ss_pred ccccCCCCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhh
Q psy8682 1498 ASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQW 1577 (1956)
Q Consensus 1498 aslgq~~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~W 1577 (1956)
..+|++ |....-|++++|+++++..-+.+ +.+.. . |..++ ..+..
T Consensus 141 ~ll~eA---N~lfarg~~eeA~~i~~EvIkqd--p~~~~---------------a-------y~tL~--------~IyEq 185 (895)
T KOG2076|consen 141 QLLGEA---NNLFARGDLEEAEEILMEVIKQD--PRNPI---------------A-------YYTLG--------EIYEQ 185 (895)
T ss_pred HHHHHH---HHHHHhCCHHHHHHHHHHHHHhC--ccchh---------------h-------HHHHH--------HHHHH
Confidence 344444 66777799999999965432222 22222 2 33343 34444
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
.++.++++.. .-.|-.+.|+ +.+.|..++....++|++.+|+-+|.+|++.+|.+....+..+.+|.++|++..
T Consensus 186 rGd~eK~l~~--~llAAHL~p~----d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~ 259 (895)
T KOG2076|consen 186 RGDIEKALNF--WLLAAHLNPK----DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKR 259 (895)
T ss_pred cccHHHHHHH--HHHHHhcCCC----ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHH
Confidence 5566666665 2233334444 446999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCCCchhhhhhcCcc----------
Q psy8682 1658 AIAALSKCLSIEPKNL-----EALMAISICFTNEACLHDALDTLKDKIRPGQ--ESNPRPSAYKADALPS---------- 1720 (1956)
Q Consensus 1658 ALe~yeKALeLdPdna-----eAl~~LA~aY~~lGdydEALe~leKALelg~--e~dPd~eay~~Ll~~~---------- 1720 (1956)
|+..|.+++.+.|... +.-...+..+...++-+.|++.++.++.... ...|+...+..+....
T Consensus 260 Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i 339 (895)
T KOG2076|consen 260 AMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKI 339 (895)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHH
Confidence 9999999999998221 1223446667777777888888887777411 1112211222111100
Q ss_pred ---------------------------------hhhhhHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1721 ---------------------------------KLTRLANH-TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1721 ---------------------------------Kl~e~a~a-~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
+..-.... ...++.+..+.++..+++..+..--...|.+ ....+
T Consensus 340 ~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d--~~dL~ 417 (895)
T KOG2076|consen 340 VDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD--DVDLY 417 (895)
T ss_pred HHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh--hHHHH
Confidence 00111111 3444445555555556655544333322443 57899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPD-DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~Pd-naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
..++.+|...|+|.+|+.+|..+....+. +..+|..+|.||..+|.+++|+++|++++...|++.++...|+.++.++|
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence 99999999999999999999999887654 57899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCh---------hchhccccchhhhcccHHHHH
Q psy8682 1846 ANTQAVEHFLTALNQQAATH---------DGLTPHGLEPRAVKEMSDSIW 1886 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~---------dA~~~LG~l~~~lg~~seAIw 1886 (1956)
+.++|++.+.....-++.+. .....+..++...|+.++-+.
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999988763332222 234555666777777766443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=172.95 Aligned_cols=270 Identities=8% Similarity=-0.047 Sum_probs=222.1
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL 1668 (1956)
+++|.++....+..+...|..+...|.+.|++++|+.+|+++.+.. .-+..++..+..++.+.|++++|.+.+..+++.
T Consensus 275 ~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 3444444333344467789999999999999999999999987653 235668888999999999999999999999887
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHH
Q psy8682 1669 E-PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLS 1747 (1956)
Q Consensus 1669 d-PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle 1747 (1956)
. +.+..++..|...|.+.|++++|.+.|+++.+. + ...|..+...|...|+.++|++
T Consensus 355 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~------d----------------~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK------N----------------LISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC------C----------------eeeHHHHHHHHHHcCCHHHHHH
Confidence 6 556678889999999999999999999876533 2 1246677899999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1748 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP--DDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1748 ~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P--dnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
+|+++.+.... .+..++..+..++...|..++|.++|+...+..+ .+...|..+..+|.+.|++++|.+.++++-
T Consensus 413 lf~~M~~~g~~--Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~- 489 (697)
T PLN03081 413 MFERMIAEGVA--PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP- 489 (697)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-
Confidence 99999875422 1267788888999999999999999999986432 345678899999999999999999988752
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1826 L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
..| +...|..|..++...|+.+.|...+++.+.+.|++...|..+..+|...|+..++.
T Consensus 490 ~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 490 FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 334 46679999999999999999999999999999999999999999999999998776
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-12 Score=170.95 Aligned_cols=313 Identities=13% Similarity=0.019 Sum_probs=203.1
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
..|++++++|+.. +++++ .+.+. ....+..+|..+...|++++|++.|+++++.+|+++.++..++.++...++
T Consensus 78 ~~~~G~~~~A~~~--~eka~--~p~n~--~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 78 AGWAGRDQEVIDV--YERYQ--SSMNI--SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHcCCcHHHHHH--HHHhc--cCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 3456677777776 66666 33322 233444456677777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCch-hhhhhcCcc-------------
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS-AYKADALPS------------- 1720 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~e-ay~~Ll~~~------------- 1720 (1956)
.++|+..+++++..+|.+... ..++.++...++..+|++.++++++. +|+.. .+..+....
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRL----APTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 777777777777777775443 44555555566666677777777776 44411 000000000
Q ss_pred --------------------------------------------------------hhh---------------------
Q psy8682 1721 --------------------------------------------------------KLT--------------------- 1723 (1956)
Q Consensus 1721 --------------------------------------------------------Kl~--------------------- 1723 (1956)
+.|
T Consensus 227 ~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 227 KENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred HhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 000
Q ss_pred ------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1724 ------------------RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1724 ------------------e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
.-..+....|..|...+++++|+.+|++++.-.|.. .........|-.+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 011112334677777777777777777776654321 01233345666777777888888
Q ss_pred HHHHHHHHHhCC---------------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q psy8682 1783 VDCFRSALQVRP---------------DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847 (1956)
Q Consensus 1783 ie~fekALel~P---------------dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdy 1847 (1956)
..++++..+..| +...+...++.++...|++.+|++.+++.+...|.+...+..+|.++...|.+
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 888877776433 22356666777788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1848 TQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1848 EEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
.+|...++.++.++|++..+...+|.++..+++..++- .....+....+++
T Consensus 467 ~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe~ 517 (822)
T PRK14574 467 RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME-LLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCCc
Confidence 88888888888888888888888888777777776553 3344444455544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-12 Score=146.76 Aligned_cols=208 Identities=14% Similarity=0.095 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1639 AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1639 aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
..+...||.-|+..|++..|...+++||+.+|++..+|..+|.+|...|+.+.|.+.|++++.+ +|+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----~p~--------- 101 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----APN--------- 101 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCC---------
Confidence 4578899999999999999999999999999999999999999999999999999999999999 777
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
..+.++|.|..++.+|++++|...|++|+.. |.....+.++.++|.|..++|+.+.|..+|+++++.+|+.+.
T Consensus 102 ------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 102 ------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred ------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 4566788999999999999999999999874 443344789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
....++..++..|+|..|..++++.....+-..+.+.....+-..+|+-+.|.++=.+..+..|...+
T Consensus 175 ~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 175 ALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999999999988888888888889999999999999999998899998665
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-14 Score=166.81 Aligned_cols=129 Identities=24% Similarity=0.425 Sum_probs=111.0
Q ss_pred HHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcccCC
Q psy8682 767 ELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEES-QKQVDRARSIYERALDVDHR 845 (1956)
Q Consensus 767 ~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~-~Gd~ErARsIfERALs~~Pk 845 (1956)
-+|+.|+.|+. -.+-.+.||++|++|+...+.+..+|+.||.+|+. .++.+.|+.|||++++.+|.
T Consensus 2 ~v~i~~m~~~~-------------r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~ 68 (280)
T PF05843_consen 2 LVWIQYMRFMR-------------RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS 68 (280)
T ss_dssp HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-------------HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 37999998876 11226789999999997656778999999999999 57777799999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 846 NITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA---NQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 846 ~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks---~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
+.++|+.|++|+++.++++.||.||||++...|.. ..+|.+|++||.++||.+.+++|++|+.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999987764 5799999999999999999999999976
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-12 Score=169.09 Aligned_cols=311 Identities=13% Similarity=-0.008 Sum_probs=227.5
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
.++|..|+.. ++++++..|.++. ....++.++...|+.++|+.++++++...|.....+..+|.++...|++++
T Consensus 47 ~Gd~~~Al~~--L~qaL~~~P~~~~----av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 47 AGDTAPVLDY--LQEESKAGPLQSG----QVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred CCCHHHHHHH--HHHHHhhCccchh----hHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4678888888 8999988887753 333788888889999999999999994445556666666889999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc-----------------
Q psy8682 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS----------------- 1720 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~----------------- 1720 (1956)
|++.|+++++.+|+++.++..++.+|...++.++|++.+++++.. +|....+..+....
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER----DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc----CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 77722221110000
Q ss_pred -hhhhhHHHHHHHHHHHHhcCCHHH------------------------------------------------HHHHHHH
Q psy8682 1721 -KLTRLANHTLTFRSPLSSREIHQQ------------------------------------------------VLSLYLN 1751 (1956)
Q Consensus 1721 -Kl~e~a~a~lnLA~ay~~lGdyeE------------------------------------------------Ale~Lek 1751 (1956)
..|.....+..+..++...|-... |+..++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 012222222222222222222211 2222222
Q ss_pred HHHh---CCCC------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1752 AARQ---CPSQ------------------------------------SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1752 ALel---~P~n------------------------------------~~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
.+.. .|.. .+...+....|..|...++.++|+..|++++.-
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 2221 1110 011334445566777888888888888888775
Q ss_pred CC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC---------------CcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1793 RP------DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP---------------GFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1793 ~P------dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P---------------dnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
.+ ........|-.+|...+++++|..++++..+..| +...+...++.++...|++.+|.
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 42 2333356778888999999999999999887443 34567888999999999999999
Q ss_pred HHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1852 EHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1852 e~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+.+++.+...|.|+..+..+|.++...|...+|. ..++.+..+.++.
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~-~~~k~a~~l~P~~ 483 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAE-QELKAVESLAPRS 483 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhhCCcc
Confidence 9999999999999999999999999999998887 6668888887775
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.3e-12 Score=145.34 Aligned_cols=311 Identities=15% Similarity=0.105 Sum_probs=241.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHH
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL-----EALMAISIC 1682 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna-----eAl~~LA~a 1682 (1956)
-|..|.-++-..+.++|++.|-.+++.+|...++...||.+|...|..+.|+..-+..++ .|+.. -++..||.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 456777788889999999999999999999999999999999999999999999876665 45533 478899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--C
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ--S 1760 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n--~ 1760 (1956)
|...|-++.|...|...++. |. ....+...|..+|....++++|++..++..++.+.. .
T Consensus 117 ym~aGl~DRAE~~f~~L~de-----~e--------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDE-----GE--------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcc-----hh--------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 99999999999999998875 22 234566778899999999999999999999998876 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-HHHHHHHHH
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-VRARYNLGI 1839 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-aeA~~~LA~ 1839 (1956)
..+..+..+|..+....+.++|+..+.+|++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+. +.+...|..
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 2356788899999999999999999999999999999999999999999999999999999999999986 568889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCCcccccccCcchhHHHHHHhh
Q psy8682 1840 TCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEWDQEKSRAHD 1919 (1956)
Q Consensus 1840 ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~~~al~Laq~~~~~~~~Ra~~ 1919 (1956)
||.++|+.++.+..+.++.+..++..- -..+..+.....-. ++...++..-+..-+. .. ...|+-.
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~-~l~l~~lie~~~G~-~~Aq~~l~~Ql~r~Pt-----------~~-gf~rl~~ 323 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADA-ELMLADLIELQEGI-DAAQAYLTRQLRRKPT-----------MR-GFHRLMD 323 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccH-HHHHHHHHHHhhCh-HHHHHHHHHHHhhCCc-----------HH-HHHHHHH
Confidence 999999999999999999999887432 22222222222222 2222333332222221 11 1122221
Q ss_pred cC-CCCCCCCCcchhHHHHHHHhhhhcccccccc
Q psy8682 1920 CS-DDDDDPSGYQPCTKLHNLSGVLGTVHLTYQC 1952 (1956)
Q Consensus 1920 ~~-~dde~peg~q~~~kL~~lsG~lg~l~~~y~~ 1952 (1956)
.. .+.++..+-.-+..++...|-.-..+.-|+|
T Consensus 324 ~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred hhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 11 1122234556677778888877777888888
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-13 Score=162.66 Aligned_cols=186 Identities=17% Similarity=0.224 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHhCCC-C--CCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhC-CCC---HHHHHHHHhhccCCCCC
Q psy8682 710 IHQQVLSLYLNAARQCPS-Q--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDF---TELLVYLFSSLDFQPPK 782 (1956)
Q Consensus 710 ~~e~v~~vF~~A~q~n~~-~--~~d~dV~~~La~Ly~~sgeyEkArelFerALkkf-P~d---~~IWl~ylsfL~~~~~~ 782 (1956)
..++..++|.+||+.-++ . +.-.+.|+.+|.+|+.+|+++.||.+|++|++.. +.- ..+|..++...+
T Consensus 362 ~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl----- 436 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL----- 436 (835)
T ss_pred ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH-----
Confidence 467899999999998443 2 6678899999999999999999999999999975 333 788888774433
Q ss_pred CCCCChHHhhHHHHHHHHHHHHHHhh------------------cCCCHHHHHHHHHHHHHcCCHHH-------------
Q psy8682 783 QKISDPDELRDYQHRKRKAFEDNIRK------------------NRMVISNWIKYAQWEESQKQVDR------------- 831 (1956)
Q Consensus 783 ~ki~d~Eea~~~~~RAR~lyEraL~~------------------~~~s~~lWlkYAqfE~~~Gd~Er------------- 831 (1956)
......+|+++.++|+.. .+.+..+|..|+++|+..|.++.
T Consensus 437 --------rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 437 --------RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred --------hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 111222333344433311 02234455566655555555544
Q ss_pred ---------------------HHHHHHHhhc--ccCCCHHHHHHHHH-HHHHcCC--hHHHHHHHHHHHHhCCCC--HHH
Q psy8682 832 ---------------------ARSIYERALD--VDHRNITLWLKYTE-LEMRNRQ--VNHARNLWDRAVTILPRA--NQF 883 (1956)
Q Consensus 832 ---------------------ARsIfERALs--~~Pk~~dLWl~Yad-fE~k~gn--ierARsLFERAL~~~Pks--~~L 883 (1956)
+-.+|||+++ ..|.-.+||+.|+. |-.+.|. .++||.|||.||..||.. .-+
T Consensus 509 aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 509 ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5555666666 46777899999986 5556664 699999999999999854 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 884 WYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 884 W~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
++.|++||+++|-..++-.||+||-
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999988888888874
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=161.40 Aligned_cols=275 Identities=14% Similarity=0.134 Sum_probs=233.9
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
....-...|..|+.. |..|+.+.|++ +..|...+..++..|+|++|....++.+.++|.........+.++..+
T Consensus 57 n~~yk~k~Y~nal~~--yt~Ai~~~pd~----a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKN--YTFAIDMCPDN----ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred chHHHHhhHHHHHHH--HHHHHHhCccc----hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 677778999999999 99999988876 458999999999999999999999999999999999999999999888
Q ss_pred CChHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1653 EQDPQAIAALSKCL------------SIE------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1653 GdyeEALe~yeKAL------------eLd------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
++..+|...|+..- .+. |....+....+.++...|++++|...--..+++ ++.
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----d~~----- 201 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL----DAT----- 201 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc----ccc-----
Confidence 88887776665211 011 222345567789999999999999999999888 555
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS---------IDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~---------~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
...+.+..|.+++..++.+.|+..|++++.++|+.. .....+...|.-.++.|+|.+|.++
T Consensus 202 ----------n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 202 ----------NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred ----------hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 455667789999999999999999999999999861 1234566778888999999999999
Q ss_pred HHHHHHhCCCC----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1786 FRSALQVRPDD----SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1786 fekALel~Pdn----aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
|.++|.++|++ +..|.++|.+..++|+.++|+...+.|+.+++....++...|.|+..++++++|++.|++|+++.
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999985 56789999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCChhchhcccc
Q psy8682 1862 AATHDGLTPHGL 1873 (1956)
Q Consensus 1862 Pdn~dA~~~LG~ 1873 (1956)
.+ .+....++.
T Consensus 352 ~s-~e~r~~l~~ 362 (486)
T KOG0550|consen 352 KD-CEIRRTLRE 362 (486)
T ss_pred cc-cchHHHHHH
Confidence 77 444433333
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=153.61 Aligned_cols=242 Identities=18% Similarity=0.172 Sum_probs=152.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------------------
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLA--------------------------------- 1650 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~--------------------------------- 1650 (1956)
+...+..+|.+++..|++++|+..|+++.-++|.+..+.-.+|.++.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 34467777888888888888888888887777776555544444444
Q ss_pred -HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH
Q psy8682 1651 -ENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT 1729 (1956)
Q Consensus 1651 -~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ 1729 (1956)
..+++..|+.+-+++++.+|.+..++...|.++...++.++|+-.|+.+..+ .|. ..+.|
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L----ap~---------------rL~~Y 371 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML----APY---------------RLEIY 371 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc----chh---------------hHHHH
Confidence 4455556666666666666666666666666666666666666666666666 333 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG-VLF-NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG-~ly-~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay 1807 (1956)
..+..+|...|++.+|....+.+++..|.+ +.++..+| .++ ..-.--++|.+.+++++++.|....+...+|.++
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~~~~s---A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRLFQNS---ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhcc---hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence 445566666666666666666666666666 55555554 222 2223345666666666666666666666666666
Q ss_pred HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
...|+++.++..+++++...|+ ...+..||.++...+.+.+|.++|..||+++|++..+.
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 6666666666666666666554 33556666666666666666666666666666655443
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-12 Score=151.00 Aligned_cols=279 Identities=15% Similarity=0.057 Sum_probs=192.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1612 G~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
|.++-...-+.-+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++..++|....+.-..|.++...|+++.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 33333333455555666666778899999999999999999999999999999999999888776666666666666665
Q ss_pred HHHHHHHHHhcCCCCCCC--chhhhh---hcCcc--------------hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPR--PSAYKA---DALPS--------------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd--~eay~~---Ll~~~--------------Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
-.......+.. ... ...+.. ++... -.+....++...|.++...++.++|+-.|+.|
T Consensus 285 ~~~L~~~Lf~~----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 285 DSALMDYLFAK----VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred HHHHHHHHHhh----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 55444444443 100 000000 00000 00112334455566666666666666666666
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHH-CCChHHHHHHHHHHHhhCCCc
Q psy8682 1753 ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG-ASLAN-GNRPEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1753 Lel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG-~ay~q-lGryeEAie~yeKALeL~Pdn 1830 (1956)
..+.|.. .+.|..|-.+|...|++.+|....+.+++.-|.++.++..+| .+++. ----++|.+.+++++.+.|.+
T Consensus 361 q~Lap~r---L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 361 QMLAPYR---LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred Hhcchhh---HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 6666665 566666666666666666666666666666666666666665 33322 222467788888889999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1831 aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
..+-..+|.++...|++++++..++++|...|+.. .+..+|.+...+..++++. +++..|+.+-++.
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAM-EYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHH-HHHHHHHhcCccc
Confidence 99999999999999999999999999999888744 5778888888888888887 8888888887764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=157.63 Aligned_cols=220 Identities=12% Similarity=0.095 Sum_probs=192.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy8682 1619 GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA-CLHDALDTLK 1697 (1956)
Q Consensus 1619 GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lG-dydEALe~le 1697 (1956)
++|.+|..+|+.++. ..+++++|+..+.++++++|++..+|..++.++..+| .+++|+..++
T Consensus 34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 456667666666554 4578889999999999999999999999999999998 6899999999
Q ss_pred HHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy8682 1698 DKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIH--QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL 1775 (1956)
Q Consensus 1698 KALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdy--eEAle~LekALel~P~n~~~a~a~~~LG~ly~~ 1775 (1956)
++++. +|+ ...++...+.++...|+. ++++.++.++++.+|.+ ..+|..+|.++..
T Consensus 97 ~~i~~----npk---------------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN---y~AW~~R~w~l~~ 154 (320)
T PLN02789 97 DVAED----NPK---------------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN---YHAWSHRQWVLRT 154 (320)
T ss_pred HHHHH----CCc---------------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc---HHHHHHHHHHHHH
Confidence 99999 777 233456667777777764 78899999999999999 9999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CCh----HHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----c
Q psy8682 1776 SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG---NRP----EEAVEAYHTALQLSPGFVRARYNLGITCVH----L 1844 (1956)
Q Consensus 1776 lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql---Gry----eEAie~yeKALeL~PdnaeA~~~LA~ay~k----l 1844 (1956)
.|++++|+++++++++.+|.+..+|+.++.++... |.+ ++++.+..+++.++|++..+|..++.++.. +
T Consensus 155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999998876 333 478889999999999999999999999988 5
Q ss_pred CCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1845 GANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
++..+|+..+.+++..+|.++-++..++.++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 667889999999999999999888888888764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-11 Score=152.94 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=201.4
Q ss_pred hhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q psy8682 1577 WFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656 (1956)
Q Consensus 1577 WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdye 1656 (1956)
-.++++.+... +.++.+..|++. .......+..+...|++++|+..++++++.+|+++.++..++.+|...|+++
T Consensus 130 ~~g~~~~A~~~--l~~A~~~~~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 130 QRGDEARANQH--LERAAELADNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HCCCHHHHHHH--HHHHHhcCCcch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 35677888877 777776554442 2234456999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHH-HHHH---HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1657 QAIAALSKCLSIEPKNLEALMAI-SICF---TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1657 EALe~yeKALeLdPdnaeAl~~L-A~aY---~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
+|+..+.+..+..+.+......+ ..+| ..........+.+.+..+. .|. +.+..+.....+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~----lp~-----------~~~~~~~~~~~~ 269 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN----QSR-----------KTRHQVALQVAM 269 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh----CCH-----------HHhCCHHHHHHH
Confidence 99999999988776654432211 1111 1111111223334443333 222 134567788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
|..+...|+.++|...++++++..+ + .......+.+ ..++.+++++.+++.++..|+++..+..+|.++...|+
T Consensus 270 A~~l~~~g~~~~A~~~L~~~l~~~~-~---~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 270 AEHLIECDDHDTAQQIILDGLKRQY-D---ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-C---HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999544 4 4443334443 45999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1813 yeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
+++|.++|+++++..|++. .+..++.++.++|+.++|..+|++++.+.
T Consensus 344 ~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 344 WQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999864 46689999999999999999999998864
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=155.51 Aligned_cols=310 Identities=16% Similarity=0.122 Sum_probs=237.7
Q ss_pred hhHHHHHhchhhHhHhhhh-ccCCCccHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFA-EDNPMQNETNAFALGQEKLRQG-----------DLPSAILYLEAAAKQEPDNAEVWLSLG 1646 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~-p~NP~~daeall~LG~aylk~G-----------dydEAIe~fekALeldPdnaeAl~~LA 1646 (1956)
+.+++++.. ..+++... .......+..++.+|.+|-.+- ...+++..++++++.+|.|+.+.++++
T Consensus 408 ~~~eegldY--A~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~la 485 (799)
T KOG4162|consen 408 KLVEEGLDY--AQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLA 485 (799)
T ss_pred hhhhhHHHH--HHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 345555555 44555421 1122225667888888775432 457899999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc-----
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSI-EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS----- 1720 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeL-dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~----- 1720 (1956)
.-|..+++.+.|+++.++++++ ..+++.+|..+|.++...+++.+|+...+.++.. .|+ ...+....
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E----~~~---N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE----FGD---NHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----hhh---hhhhchhhhhhhh
Confidence 9999999999999999999999 5678889999999999999999999999999988 444 11111000
Q ss_pred hhhhh---HH-----------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------------CCC--
Q psy8682 1721 KLTRL---AN-----------------------HTLTFRSPLSSREIHQQVLSLYLNAARQC-------------PSQ-- 1759 (1956)
Q Consensus 1721 Kl~e~---a~-----------------------a~lnLA~ay~~lGdyeEAle~LekALel~-------------P~n-- 1759 (1956)
+..+. .+ .....+......++..+|...++++...- |..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 00000 00 00011122223345555555555553321 111
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH
Q psy8682 1760 --------SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1760 --------~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna 1831 (1956)
......|...|..+...+..++|..++.++-.++|..+..|+..|.++...|+..+|.+.|..|+.++|+++
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 011245677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1832 RARYNLGITCVHLGANTQAVE--HFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie--~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
.+...+|.++...|+..-|.. .+..+++++|.++++|+.+|.+....|+..+|. +++..|..+...
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S 786 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccC
Confidence 999999999999999888888 999999999999999999999999999998887 777777666554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-10 Score=158.44 Aligned_cols=235 Identities=13% Similarity=0.045 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQ----EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE-PKNLEALMAI 1679 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALel----dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd-PdnaeAl~~L 1679 (1956)
...|..+...+.+.|++++|..+|+++... .| +..+|..+..+|.+.|++++|.+.|+.+.+.+ +.+...|..+
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 444555555555555555555555555431 12 23444445555555555555555555555443 2334445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1680 SICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1680 A~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
...|.+.|++++|+.+|+++.+. ...|+ ...+..+...|...|++++|.+++.++.+....
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~--Gv~PD----------------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~- 681 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKK--GVKPD----------------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK- 681 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCCC----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-
Confidence 55555555555555555555443 01111 234555566666666666666666666554321
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcHHHHHHH
Q psy8682 1760 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS-PGFVRARYNL 1837 (1956)
Q Consensus 1760 ~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~-PdnaeA~~~L 1837 (1956)
....++..+...|.+.|++++|.+.|++..... ..+...|+.+...|.+.|++++|++.|+++.... .-+...|..+
T Consensus 682 -pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 682 -LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred -CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 124556666666666666666666666654432 2234556666666666666666666666655431 1134455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeL 1860 (1956)
..++.+.|++++|..++.++++.
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc
Confidence 56666666666666666666553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-10 Score=158.58 Aligned_cols=322 Identities=12% Similarity=0.036 Sum_probs=236.9
Q ss_pred CcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHH
Q psy8682 1505 VPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRN 1584 (1956)
Q Consensus 1505 v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeA 1584 (1956)
++..+...+++++|.+++..+....+.+.... |. .+. ..+...+++++|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~t----------------yn-------sLI--------~~y~k~G~vd~A 491 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKL----------------YT-------TLI--------STCAKSGKVDAM 491 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH----------------HH-------HHH--------HHHHhCcCHHHH
Confidence 46677888999999999888766554332221 12 222 122334456666
Q ss_pred HhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy8682 1585 QRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAENEQDPQAIAALS 1663 (1956)
Q Consensus 1585 Ls~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~lGdyeEALe~ye 1663 (1956)
... ++...... ...+...|..+...|.+.|++++|+.+|+++.... .-+..+|..+...|.+.|++++|.+.|.
T Consensus 492 ~~v--f~eM~~~G---v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 492 FEV--FHEMVNAG---VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred HHH--HHHHHHcC---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 665 55554321 22256788888999999999999999999887653 2246788889999999999999999999
Q ss_pred HHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc
Q psy8682 1664 KCLSI----EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR 1739 (1956)
Q Consensus 1664 KALeL----dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l 1739 (1956)
++... .|+ ...+..+...|.+.|++++|.+.|+++.+. +.. .....|..+...|.+.
T Consensus 567 eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~----gi~--------------p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 567 EMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY----NIK--------------GTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCC--------------CChHHHHHHHHHHHhc
Confidence 88763 343 567888888899999999999999999887 211 1233456677888999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDDSRLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-PdnaeA~~nLG~ay~qlGryeEAie 1818 (1956)
|++++|+.+|.++.+..-. .+..++..+...|.+.|++++|.+.++++.+.. +.+..+|..+..+|.+.|++++|+.
T Consensus 628 G~~deAl~lf~eM~~~Gv~--PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVK--PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999998876321 125678888889999999999999999988765 4467889999999999999999999
Q ss_pred HHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCChhchhccccchhhhcccHHHH
Q psy8682 1819 AYHTALQL--SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ--QAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1819 ~yeKALeL--~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL--dPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
.|+++.+. .| +...|..|...|.+.|++++|+++|++.... .|+ ...|..+-..+...|+..++.
T Consensus 706 lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 706 LYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGL 774 (1060)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 99988764 34 4677889999999999999999999987654 344 345555555566666665544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-11 Score=162.22 Aligned_cols=294 Identities=12% Similarity=0.004 Sum_probs=237.6
Q ss_pred CCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHH
Q psy8682 1504 PVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSR 1583 (1956)
Q Consensus 1504 ~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYee 1583 (1956)
.+++.|...+++++|.++|..+... +..- |..+. ..+...+++++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~--------------------~~vt-------~n~li--------~~y~~~g~~~e 308 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEK--------------------TTVA-------WNSML--------AGYALHGYSEE 308 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCC--------------------ChhH-------HHHHH--------HHHHhCCCHHH
Confidence 3578899999999999998765432 1122 33433 23444567788
Q ss_pred HHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy8682 1584 NQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAENEQDPQAIAAL 1662 (1956)
Q Consensus 1584 ALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~lGdyeEALe~y 1662 (1956)
|+.. |++.... .-..+...+..+...+.+.|++++|...+..+++.. +.+..++..+...|.+.|++++|...|
T Consensus 309 A~~l--f~~M~~~---g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 309 ALCL--YYEMRDS---GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred HHHH--HHHHHHc---CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence 8877 6665432 112256688899999999999999999999999876 567788999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCH
Q psy8682 1663 SKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIH 1742 (1956)
Q Consensus 1663 eKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdy 1742 (1956)
+++.+ .+...|+.+...|...|+.++|++.|+++.+. ...|+ ..++..+..++...|+.
T Consensus 384 ~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd----------------~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 384 DRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPN----------------HVTFLAVLSACRYSGLS 442 (697)
T ss_pred HhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCC----------------HHHHHHHHHHHhcCCcH
Confidence 98754 35568999999999999999999999999876 22454 23455667889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q psy8682 1743 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHT 1822 (1956)
Q Consensus 1743 eEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeK 1822 (1956)
++|.++|+.+.+..+-. .....|..+..+|.+.|++++|.+.+++.- .. .+..+|..+..++...|+++.|...+++
T Consensus 443 ~~a~~~f~~m~~~~g~~-p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 443 EQGWEIFQSMSENHRIK-PRAMHYACMIELLGREGLLDEAYAMIRRAP-FK-PTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHHHhcCCC-CCccchHhHHHHHHhcCCHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 99999999998653322 224678899999999999999999988642 22 3567899999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1823 ALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1823 ALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
++++.|++...|..|+.+|.+.|++++|.+.++...+..
T Consensus 520 l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999887653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-11 Score=163.50 Aligned_cols=314 Identities=10% Similarity=-0.004 Sum_probs=204.9
Q ss_pred CCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHH
Q psy8682 1504 PVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSR 1583 (1956)
Q Consensus 1504 ~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYee 1583 (1956)
.+++.|...+++++|+++|..+....+.+....- ..+- . +....++++.
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~----------------~~ll---~------------a~~~~g~~~~ 407 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITI----------------ASVL---S------------ACACLGDLDV 407 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH----------------HHHH---H------------HHhccchHHH
Confidence 3456788889999999999877554443332220 0000 0 1111223333
Q ss_pred HHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy8682 1584 NQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS 1663 (1956)
Q Consensus 1584 ALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~ye 1663 (1956)
+... +..+.+... ..+...+..+...|.+.|++++|...|++..+ .+..+|..+...|...|+.++|+..|+
T Consensus 408 a~~l--~~~~~~~g~---~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 408 GVKL--HELAERKGL---ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred HHHH--HHHHHHhCC---CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333 222222111 11233444455555555555555555554322 233445555555555555555555555
Q ss_pred HHHHhCCCCHHHH-----------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q psy8682 1664 KCLSIEPKNLEAL-----------------------------------MAISICFTNEACLHDALDTLKDKIRPGQESNP 1708 (1956)
Q Consensus 1664 KALeLdPdnaeAl-----------------------------------~~LA~aY~~lGdydEALe~leKALelg~e~dP 1708 (1956)
+++...+.+...+ ..|...|.+.|+.++|...|+.. .
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~------- 551 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E------- 551 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C-------
Confidence 5543322223333 34445555555555555555443 1
Q ss_pred CchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1709 RPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ--CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786 (1956)
Q Consensus 1709 d~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel--~P~n~~~a~a~~~LG~ly~~lGdyeEAie~f 1786 (1956)
....+|..+...|...|+.++|+++|+++.+. .|+ ..++..+-..+.+.|+.++|..+|
T Consensus 552 ---------------~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 552 ---------------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD----EVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred ---------------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----cccHHHHHHHHhhcChHHHHHHHH
Confidence 12345777889999999999999999998875 344 455667777889999999999999
Q ss_pred HHHHHhCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1787 RSALQVRP--DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1787 ekALel~P--dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
+...+..+ .+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..|-.++...|+.+.|....+++++++|++
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 99885432 34578999999999999999999999886 34554 6678888888889999999999999999999999
Q ss_pred hhchhccccchhhhcccHHHH
Q psy8682 1865 HDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1865 ~dA~~~LG~l~~~lg~~seAI 1885 (1956)
...|..++.+|...|+..++.
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred cchHHHHHHHHHHCCChHHHH
Confidence 999999999999999987765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=155.21 Aligned_cols=130 Identities=18% Similarity=0.372 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 815 NWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMR-NRQVNHARNLWDRAVTILPRANQFWYKYTYMEEM 893 (1956)
Q Consensus 815 lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k-~gnierARsLFERAL~~~Pks~~LW~kYidfE~k 893 (1956)
+|+.|++|..+.+.++.||.||++|+...+....+|..|+.+|.. .++.+.|+.|||++++..|...++|..|++|+.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 799999999999899999999999998777789999999999999 5777779999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhc-----cC-chHHHHHHHHhhcccccchHHHHHHHHHHHhccccC
Q psy8682 894 LENVAGKLFVFHRDS-----IS-QVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECCC 946 (1956)
Q Consensus 894 ~Gd~e~aR~VfERAL-----~~-~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~~ 946 (1956)
.||.+++|.||||++ .. ...||..|++||.+.+ .+....++.+|...-++-
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G--dl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG--DLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhh
Confidence 999999999999998 22 4579999999999965 677777777776655543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-11 Score=137.16 Aligned_cols=186 Identities=18% Similarity=0.226 Sum_probs=141.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA---EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE---ALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdna---eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnae---Al~ 1677 (1956)
.++.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++.. +++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 788999999999999999999999999999999875 58899999999999999999999999999998776 688
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1678 AISICFTNE--------ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1678 ~LA~aY~~l--------GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
.+|.++... |++++|+..+++++.. +|+.... ..+...++....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~------------~~a~~~~~~~~~------------ 163 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----YPNSEYA------------PDAKKRMDYLRN------------ 163 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----CCCChhH------------HHHHHHHHHHHH------------
Confidence 999999876 8899999999999999 7771101 011111111100
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
.. ......+|.+|...|++.+|+..|++++...|+. +.++..+|.++..+|++++|..+++.....
T Consensus 164 --------~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 164 --------RL---AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --------HH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00 1123456677777777777777777777776543 467777777777777777777777666554
Q ss_pred CC
Q psy8682 1827 SP 1828 (1956)
Q Consensus 1827 ~P 1828 (1956)
.|
T Consensus 233 ~~ 234 (235)
T TIGR03302 233 YP 234 (235)
T ss_pred CC
Confidence 44
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-11 Score=136.21 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=151.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCc
Q psy8682 1634 QEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRP 1710 (1956)
Q Consensus 1634 ldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~ 1710 (1956)
.++..+..++.+|..+...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..++++++. .|+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~- 102 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----HPN- 102 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcC-
Confidence 3455678899999999999999999999999999998875 57788999999999999999999999988 666
Q ss_pred hhhhhhcCcchhhhhHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1711 SAYKADALPSKLTRLANHTLTFRSPLSSR--------EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1711 eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l--------GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
.+....+++.+|.++... |++++|+..++++++.+|++ ..++..+..+.. ....
T Consensus 103 -----------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~~~~----~~~~ 164 (235)
T TIGR03302 103 -----------HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS---EYAPDAKKRMDY----LRNR 164 (235)
T ss_pred -----------CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC---hhHHHHHHHHHH----HHHH
Confidence 234556788888888876 78888999999999888887 333322211111 0000
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---FVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd---naeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
.......+|.++...|++.+|+..|++++...|+ ...+++.+|.++..+|++++|..+++....
T Consensus 165 -------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 -------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0122357889999999999999999999998765 468999999999999999999998888776
Q ss_pred hcCC
Q psy8682 1860 QQAA 1863 (1956)
Q Consensus 1860 LdPd 1863 (1956)
..|+
T Consensus 232 ~~~~ 235 (235)
T TIGR03302 232 NYPD 235 (235)
T ss_pred hCCC
Confidence 6553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.6e-12 Score=159.79 Aligned_cols=343 Identities=15% Similarity=0.157 Sum_probs=244.5
Q ss_pred CCCcccccccccccCCCCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhc
Q psy8682 1488 QTGPLFSNGVASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESL 1567 (1956)
Q Consensus 1488 ~~~~lf~~a~aslgq~~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~ 1567 (1956)
.+++.|+.+.+.+|+. |....+..+|..||...-..+- + +...|..+ -+.+.
T Consensus 486 rld~~~apaf~~LG~i-----Yrd~~Dm~RA~kCf~KAFeLDa----t-------------daeaaaa~---adtya--- 537 (1238)
T KOG1127|consen 486 RLDVSLAPAFAFLGQI-----YRDSDDMKRAKKCFDKAFELDA----T-------------DAEAAAAS---ADTYA--- 537 (1238)
T ss_pred hcccchhHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCc----h-------------hhhhHHHH---HHHhh---
Confidence 5788899999998876 8888888889888765443331 1 11111111 11111
Q ss_pred CCCCCChhhhhhhHHHHHhchhhHhHhhhhccCC-CccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1568 GSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNP-MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLG 1646 (1956)
Q Consensus 1568 ~s~~~~a~~WL~dYeeALs~s~ydKAlqL~p~NP-~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA 1646 (1956)
-..+.+.|... .+....+.| ......|..+|..|...++...|+..|+.++..+|.+..+|..+|
T Consensus 538 ---------e~~~we~a~~I-----~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLG 603 (1238)
T KOG1127|consen 538 ---------EESTWEEAFEI-----CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLG 603 (1238)
T ss_pred ---------ccccHHHHHHH-----HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHH
Confidence 11222333222 111111111 113347788999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhH
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLA 1726 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a 1726 (1956)
.+|...|+|..|++.|.+|..++|.+.-+.+..+.+....|+|.+|+..+...+.. ... +.... ...+
T Consensus 604 eAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~----~s~---e~~~q-----~gLa 671 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA----FSL---ERTGQ-----NGLA 671 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHH---HHHhh-----hhHH
Confidence 99999999999999999999999999999999999999999999999999888876 211 11111 1233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------------------------------------------------
Q psy8682 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQC-------------------------------------------------- 1756 (1956)
Q Consensus 1727 ~a~lnLA~ay~~lGdyeEAle~LekALel~-------------------------------------------------- 1756 (1956)
..+...+..+...|-+.+|...++++++..
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 344444444444444444444443332210
Q ss_pred -CCC----------------CCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1757 -PSQ----------------SIDPDVQNGLGVLFNL--------SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1757 -P~n----------------~~~a~a~~~LG~ly~~--------lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
|++ ...+..|+++|.-|++ +.+...|+.++.+++++..++...|+.||.+ ...|
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~g 830 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIG 830 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccc
Confidence 000 0114467778877665 1233478899999999999999999999988 5568
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
++.-|..+|-+++...|.....|.++|.++....+++-|...|.++..++|.+...|...+.+...+|..-+..
T Consensus 831 nva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 831 NVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999888888888887777654443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-12 Score=135.05 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=117.4
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
..+++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++
T Consensus 13 ~~~~~~al~~~p~~------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPET------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 46788999998875 667899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1826 L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
++|+++.+++++|.++..+|++++|+..|++++++.|+++..+.++|.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988876543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-10 Score=131.81 Aligned_cols=257 Identities=15% Similarity=0.128 Sum_probs=218.0
Q ss_pred HHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChH
Q psy8682 1582 SRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-----AEVWLSLGISLAENEQDP 1656 (1956)
Q Consensus 1582 eeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn-----aeAl~~LA~ay~~lGdye 1656 (1956)
++|+.. |-..++ .+|. ..++.+.+|..+...|..+.||.+-+..+.. |+. ..+++.||.-|+..|-++
T Consensus 52 dKAvdl--F~e~l~---~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 52 DKAVDL--FLEMLQ---EDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred chHHHH--HHHHHh---cCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 455555 434343 4555 6789999999999999999999998776654 543 458899999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH
Q psy8682 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL 1736 (1956)
Q Consensus 1657 EALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay 1736 (1956)
.|...|....+...--..++..|..+|....++++|++.-++..++ .+. .| ....+..+..+|..+
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q--~~--------~~eIAqfyCELAq~~ 190 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQ--TY--------RVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCc--cc--------hhHHHHHHHHHHHHH
Confidence 9999999988765555678999999999999999999999999998 444 01 124566677899999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHH
Q psy8682 1737 SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-SRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1737 ~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn-aeA~~nLG~ay~qlGryeE 1815 (1956)
....+.+.|...+.+|++.+|+. ..+-..+|.++...|+|++|++.++.+++.+|+. +.+...|..+|.++|+.++
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~c---vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKC---VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccc---eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999 8889999999999999999999999999999985 5788899999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.+..+.++.+..++ ..+-..++..-....-.++|..++.+-+...|+
T Consensus 268 ~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 268 GLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 99999999998776 345556677767777788999999999999998
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-10 Score=134.70 Aligned_cols=292 Identities=10% Similarity=0.020 Sum_probs=201.6
Q ss_pred hHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----
Q psy8682 1580 DFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD---- 1655 (1956)
Q Consensus 1580 dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy---- 1655 (1956)
+++.+... +.++.+..+.+.. ..+..+..|..+...|++++|+..++++++.+|++..++.. +..+...|++
T Consensus 21 ~~~~~~~~--~~~~~~~~~~~~~-~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~ 96 (355)
T cd05804 21 ERPAAAAK--AAAAAQALAARAT-ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMR 96 (355)
T ss_pred CcchHHHH--HHHHHHHhccCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCc
Confidence 34444444 5556665665554 66778889999999999999999999999999999887775 5555555544
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
..+...+......+|....++..+|.++...|++++|...+++++++ +|+ ....+..+|.+
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~p~---------------~~~~~~~la~i 157 (355)
T cd05804 97 DHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----NPD---------------DAWAVHAVAHV 157 (355)
T ss_pred hhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC---------------CcHHHHHHHHH
Confidence 44444444433456777778888999999999999999999999999 776 23456788999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH---HHHHHHHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD--DSRLWN---RLGASLAN 1809 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd--naeA~~---nLG~ay~q 1809 (1956)
+...|++++|+.++.+++...|.. ......+..+|.++..+|++++|+..|++++...|. ...... .+...+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 999999999999999999987743 112345678999999999999999999999876662 221111 22223334
Q ss_pred CCChHHHHHH--H-HHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------Chhchhccccch
Q psy8682 1810 GNRPEEAVEA--Y-HTALQLSPG--FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA---------THDGLTPHGLEP 1875 (1956)
Q Consensus 1810 lGryeEAie~--y-eKALeL~Pd--naeA~~~LA~ay~klGdyEEAie~yekALeLdPd---------n~dA~~~LG~l~ 1875 (1956)
.|....+... . .......+. ........+.++...|+.++|...++......-. .......++.++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 4443333332 1 111111122 2223346788889999999999999887664432 233455667777
Q ss_pred hhhcccHHHHHHHHHhcccc
Q psy8682 1876 RAVKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1876 ~~lg~~seAIws~Lr~Al~l 1895 (1956)
...|++.+++ ..|..++..
T Consensus 318 ~~~g~~~~A~-~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATAL-ELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHH-HHHHHHHHH
Confidence 7888887776 556655443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-10 Score=136.52 Aligned_cols=206 Identities=16% Similarity=0.069 Sum_probs=158.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAIS 1680 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA 1680 (1956)
.+.++..+|..+...|+.+.|...+.++.+..+.+ .+..+..+.++...|++++|...++++++.+|++..++.. +
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-H 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence 55688888988888898999888888888777644 4567778888889999999999999999999988877665 5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS 1760 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~ 1760 (1956)
..+...|.+..+.....+++... .|. .+........+|.++...|++++|+..+++++++.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~---~~~------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~- 147 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW---APE------------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD- 147 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc---CcC------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Confidence 56666665555555444444320 111 23345566678888888889999999999998888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----RLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna----eA~~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
..++..+|.++...|++++|+.++++++...|..+ ..+..+|.++..+|++++|+..|++++...|
T Consensus 148 --~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 148 --AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred --cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 77888888888888999999998888888776432 3456788888888999889888888877666
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=147.59 Aligned_cols=290 Identities=11% Similarity=0.032 Sum_probs=230.8
Q ss_pred CcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHH
Q psy8682 1505 VPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRN 1584 (1956)
Q Consensus 1505 v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeA 1584 (1956)
+++.|...+++++|+++|..+...+. . - |..+. ..+...+++++|
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~d~-----v---------------s-------~~~mi--------~~~~~~g~~~eA 474 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEKDV-----I---------------S-------WTSII--------AGLRLNNRCFEA 474 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCe-----e---------------e-------HHHHH--------HHHHHCCCHHHH
Confidence 56889999999999999886654321 1 1 33333 233344567778
Q ss_pred HhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy8682 1585 QRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEP-DNAEVWLSLGISLAENEQDPQAIAALS 1663 (1956)
Q Consensus 1585 Ls~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldP-dnaeAl~~LA~ay~~lGdyeEALe~ye 1663 (1956)
+.. |++...- ..| +...+..+-.++...|+.+.+...+..+++..- .+...+..+...|.+.|+.++|...|+
T Consensus 475 ~~l--f~~m~~~--~~p--d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 475 LIF--FRQMLLT--LKP--NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred HHH--HHHHHhC--CCC--CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 877 7776532 122 455777788888999999999999999987642 345567788899999999999999998
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHH
Q psy8682 1664 KCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQ 1743 (1956)
Q Consensus 1664 KALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdye 1743 (1956)
.. +.+..+|..+...|...|+.++|++.|+++.+. +..|+.. ++..+...+...|+.+
T Consensus 549 ~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~----------------T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 549 SH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEV----------------TFISLLCACSRSGMVT 606 (857)
T ss_pred hc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcc----------------cHHHHHHHHhhcChHH
Confidence 86 557779999999999999999999999999876 2355522 2344457888999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1744 EAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+|..+|+.+.+..+-. .....|..+..++.+.|++++|.+.+++. .+.|+ ..+|..|-.++...|+.+.|....+++
T Consensus 607 ea~~~f~~M~~~~gi~-P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 607 QGLEYFHSMEEKYSIT-PNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999998554332 22678999999999999999999999885 34454 677888888888999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1824 LQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1824 LeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
+++.|++...+..|+.+|...|++++|.+..+...+.
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999887654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-10 Score=128.10 Aligned_cols=125 Identities=22% Similarity=0.304 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCC--hHH
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL-ANGNR--PEE 1815 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay-~qlGr--yeE 1815 (1956)
.++.++++..++++++.+|++ ...|..+|.+|...|++++|+.+|++++++.|+++.++..+|.++ ...|+ +++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN---SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 677789999999999999999 999999999999999999999999999999999999999999975 67787 599
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
|...++++++.+|++..+++.+|.++...|++++|+.+|++++++.|.+.+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999999998554
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-11 Score=143.32 Aligned_cols=265 Identities=14% Similarity=0.156 Sum_probs=199.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHH
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNA----EVWLSLGISLAENEQDPQAIAALSKCLSIE------PKNLEALM 1677 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdna----eAl~~LA~ay~~lGdyeEALe~yeKALeLd------PdnaeAl~ 1677 (1956)
+-..|.-+++.|++...+.+|+.|++...++. .+|..||.+|..+++|++|+++-..-+.+. -..+.+--
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 34568889999999999999999999987764 467899999999999999998865433321 22334567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCH---------------
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIH--------------- 1742 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdy--------------- 1742 (1956)
+||+.+...|.|++|+.++.+-+.. -..+... .....+++++|.+|...|+.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~----------areLgDr---v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~e 166 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDF----------ARELGDR---VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAE 166 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHH----------HHHHhHH---HhhhHHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence 8999999999999999999998877 3333311 23567889999999866643
Q ss_pred -----HHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Q psy8682 1743 -----QQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD------DSRLWNRLGASLA 1808 (1956)
Q Consensus 1743 -----eEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd------naeA~~nLG~ay~ 1808 (1956)
+.|.++|..-+++.... .....++-+||..|+.+|+|++|+..-+.-+.+... .-.++.++|.++.
T Consensus 167 v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 167 VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 33444444444443221 112356778888999999999999998887776533 2368889999999
Q ss_pred HCCChHHHHHHHHHHHhhC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------Chhchhccccchh
Q psy8682 1809 NGNRPEEAVEAYHTALQLS----PG--FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA------THDGLTPHGLEPR 1876 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~----Pd--naeA~~~LA~ay~klGdyEEAie~yekALeLdPd------n~dA~~~LG~l~~ 1876 (1956)
-+|+++.|+++|++++.+. .. .+...|.||..|.-+.++++|+.|+.+-|.+... ...+++.+|..+.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999987642 22 3556789999999999999999999988876543 3347778888888
Q ss_pred hhcccHHHH
Q psy8682 1877 AVKEMSDSI 1885 (1956)
Q Consensus 1877 ~lg~~seAI 1885 (1956)
.+|+...++
T Consensus 327 alg~h~kAl 335 (639)
T KOG1130|consen 327 ALGEHRKAL 335 (639)
T ss_pred hhhhHHHHH
Confidence 888877765
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=139.28 Aligned_cols=236 Identities=17% Similarity=0.156 Sum_probs=163.5
Q ss_pred cccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCC----CCChHHHHHHHH-------HHhhcccHHHH
Q psy8682 683 KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ----SIDPDVQNGLGV-------LFNLSDEYDKA 751 (1956)
Q Consensus 683 k~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~----~~d~dV~~~La~-------Ly~~sgeyEkA 751 (1956)
+|-.+|+-|++-++.- .=.+.|--...+++|.++|.+|+..--.. =.|++.+..=++ +-+++.+|-+|
T Consensus 126 ~s~siW~eYi~FL~~v-ea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~A 204 (656)
T KOG1914|consen 126 KSYSIWDEYINFLEGV-EAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNA 204 (656)
T ss_pred ccchhHHHHHHHHHcc-cccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 5677899999988732 22223333447888999999999873321 013333333222 22567888899
Q ss_pred HHHHHHHHhh------C-CC-----------CHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCH
Q psy8682 752 VDCFRSALQV------R-PD-----------FTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVI 813 (1956)
Q Consensus 752 relFerALkk------f-P~-----------d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~ 813 (1956)
|.+++..... . |. ..++|.++++...+.+ .+.+.-.-+-.|..-+||+++...+.++
T Consensus 205 R~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp-----L~t~~~~~~~~Rv~yayeQ~ll~l~~~p 279 (656)
T KOG1914|consen 205 RRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP-----LRTLDGTMLTRRVMYAYEQCLLYLGYHP 279 (656)
T ss_pred HHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC-----cccccccHHHHHHHHHHHHHHHHHhcCH
Confidence 9999886542 1 11 1678988887766433 2222223345577788999999999999
Q ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHHHhhcccC-----------------------------------
Q psy8682 814 SNWIKYAQWEESQKQ--------------VDRARSIYERALDVDH----------------------------------- 844 (1956)
Q Consensus 814 ~lWlkYAqfE~~~Gd--------------~ErARsIfERALs~~P----------------------------------- 844 (1956)
++|..|+.|-...++ -++++++|||++...-
T Consensus 280 eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 280 EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLK 359 (656)
T ss_pred HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHh
Confidence 999999999877666 6889999998876110
Q ss_pred ---CC-HHHHHHHHHHHHHcCChHHHHHHHHHH-----------------------------------HHhCCCCHHHHH
Q psy8682 845 ---RN-ITLWLKYTELEMRNRQVNHARNLWDRA-----------------------------------VTILPRANQFWY 885 (1956)
Q Consensus 845 ---k~-~dLWl~YadfE~k~gnierARsLFERA-----------------------------------L~~~Pks~~LW~ 885 (1956)
.. .-+|.+|+.+-.+...++.||.||.+| ++..++.+.+-.
T Consensus 360 ~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~ 439 (656)
T KOG1914|consen 360 IEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVL 439 (656)
T ss_pred hhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHH
Confidence 11 124888888877777777778777775 455688888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhccC------chHHHHHHHHhhcc
Q psy8682 886 KYTYMEEMLENVAGKLFVFHRDSIS------QVTLWLGALTLSLE 924 (1956)
Q Consensus 886 kYidfE~k~Gd~e~aR~VfERAL~~------~~~LWl~Yi~fEle 924 (1956)
+|++|....|+.+++|.+|||++++ ...||..+++||-.
T Consensus 440 ~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 440 KYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 9999999999999999999998833 33566666666555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=123.10 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
+..+|.++...|++++|+.+|++++..+|.+ ..++..+|.++...|++++|+..|++++.++|+++.+++++|.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.+|++++|+..|++++++.|+++..+.++|.+...+
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999988877654
|
|
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.7e-11 Score=148.30 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=165.4
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHhhcccHHH---HHHHHHHHHhhCCCCHHH
Q psy8682 693 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS-QSIDPDVQNGLGVLFNLSDEYDK---AVDCFRSALQVRPDFTEL 768 (1956)
Q Consensus 693 ~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~-~~~d~dV~~~La~Ly~~sgeyEk---ArelFerALkkfP~d~~I 768 (1956)
..++|+....-+.++++..+.--+...+.++...+ .+.++..++.|+.|+...|++++ |+..|+.+++.+|..|..
T Consensus 73 ~s~~~sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~ 152 (881)
T KOG0128|consen 73 SSLESSSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLE 152 (881)
T ss_pred ccCCccCcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHH
Confidence 45566666555555555555333333333333111 13489999999999999999988 677777766555555555
Q ss_pred HHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHhhc
Q psy8682 769 LVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQ-------KQVDRARSIYERALD 841 (1956)
Q Consensus 769 Wl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~-------Gd~ErARsIfERALs 841 (1956)
|+.-...+. ...+ ...+-.+|++++.. +.++.+|..|+.|.... +++++.|.+|+|+|.
T Consensus 153 Wl~d~~~mt------~s~~-------~~~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 153 WLKDELSMT------QSEE-------RKEVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhhc------cCcc-------hhHHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 544443322 1122 23455689999988 88999999999997643 578999999999998
Q ss_pred ----ccCCCHHHHHHHHHHHHHc--------------------------------------------------CChHHHH
Q psy8682 842 ----VDHRNITLWLKYTELEMRN--------------------------------------------------RQVNHAR 867 (1956)
Q Consensus 842 ----~~Pk~~dLWl~YadfE~k~--------------------------------------------------gnierAR 867 (1956)
+..+...||..|.+||... .+....+
T Consensus 219 s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~ 298 (881)
T KOG0128|consen 219 SLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKIL 298 (881)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHH
Confidence 5668889999999985421 0112233
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc---cCchHHHHHHH---HhhcccccchHHHHHHHHHHHh
Q psy8682 868 NLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS---ISQVTLWLGAL---TLSLEGLGSNLQSWVRFLARDV 941 (1956)
Q Consensus 868 sLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL---~~~~~LWl~Yi---~fEle~~~~~lk~~~r~l~ral 941 (1956)
..|++.+...|-....|..|++||.+.|++.+...+++|++ .-..++|+.|- +.|++.. +.-++...+++
T Consensus 299 ~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~----~~~~~~~~ra~ 374 (881)
T KOG0128|consen 299 FKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVP----QRGVSVHPRAV 374 (881)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccc----cccccccchhh
Confidence 34555555555567889999999999999999999999998 56689999882 2244432 33466777888
Q ss_pred cccc-Ccccee
Q psy8682 942 GECC-CGQVVS 951 (1956)
Q Consensus 942 kec~-~g~~~~ 951 (1956)
|.|| .|++-+
T Consensus 375 R~cp~tgdL~~ 385 (881)
T KOG0128|consen 375 RSCPWTGDLWK 385 (881)
T ss_pred cCCchHHHHHH
Confidence 8888 777654
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-11 Score=140.01 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=207.9
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLGIS 1648 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel------dPdnaeAl~~LA~a 1648 (1956)
...++++..-+.. |++|++...++-..-..+|..+|.+|+..++|.+|+++-.--+.+ .-..+.+--+||.+
T Consensus 27 Lck~gdcraGv~f--f~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 27 LCKMGDCRAGVDF--FKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHhccchhhhHHH--HHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4456678888877 889998887776655667888999999999999999986544432 22345667789999
Q ss_pred HHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHhcCCCCCCC
Q psy8682 1649 LAENEQDPQAIAALSKCLSIEP------KNLEALMAISICFTNEACL-------------HDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1649 y~~lGdyeEALe~yeKALeLdP------dnaeAl~~LA~aY~~lGdy-------------dEALe~leKALelg~e~dPd 1709 (1956)
+..+|.|++|+-+..+-+.+.. ....+++++|.+|...|+. +++...++.+++.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f------- 177 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF------- 177 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH-------
Confidence 9999999999999988776542 2346899999999887651 2344444444433
Q ss_pred chhhhhhcC-cchh---hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1710 PSAYKADAL-PSKL---TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1710 ~eay~~Ll~-~~Kl---~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
|..-+. ..++ .....++-+||+.|+-+|+|+.|+..-+.-+.+.... .....++.++|.++.-+|+++.|
T Consensus 178 ---y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 178 ---YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred ---HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 221110 0001 2334567789999999999999999888877765432 12346889999999999999999
Q ss_pred HHHHHHHHHhC----CC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCCHHHH
Q psy8682 1783 VDCFRSALQVR----PD--DSRLWNRLGASLANGNRPEEAVEAYHTALQLSP------GFVRARYNLGITCVHLGANTQA 1850 (1956)
Q Consensus 1783 ie~fekALel~----Pd--naeA~~nLG~ay~qlGryeEAie~yeKALeL~P------dnaeA~~~LA~ay~klGdyEEA 1850 (1956)
+++|+.++.+. .. .+...+.||..|.-..++++|+.++.+-+.+.. ....+++.||.++..+|..++|
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 99999987653 22 356788999999999999999999999877642 3467899999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy8682 1851 VEHFLTALNQQA 1862 (1956)
Q Consensus 1851 ie~yekALeLdP 1862 (1956)
+.+.++.+++.-
T Consensus 335 l~fae~hl~~s~ 346 (639)
T KOG1130|consen 335 LYFAELHLRSSL 346 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999988887643
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-09 Score=134.46 Aligned_cols=242 Identities=13% Similarity=0.089 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
.+|..+.-.+..++|...+...+.+++..|.+++.+...|..+..+|+-++|..+...++..++.....|..+|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
.+|++|+++|+.|+.+ .|+ ....+..++.+..+.++++.....-.+.++..|.. ...|
T Consensus 89 K~Y~eaiKcy~nAl~~----~~d---------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~---ra~w 146 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI----EKD---------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ---RASW 146 (700)
T ss_pred hhHHHHHHHHHHHHhc----CCC---------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh---HHHH
Confidence 5555555555555555 444 22223444455555555555555555555555554 4555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVR---PDD-----SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~---Pdn-----aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
...+..+...|++..|....+...+.. |.. ..+......+....|.+++|++.+.+--..--+........|
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka 226 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKA 226 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHH
Confidence 555555555555555555554444332 111 122333334444455555544444332221112222333445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
.++.+++++++|...|...+..+|++.+-+..
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~ 258 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG 258 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH
Confidence 55555555555555555555555555544333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-08 Score=127.85 Aligned_cols=278 Identities=14% Similarity=0.051 Sum_probs=204.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
..+.++..+.++...|++++|+..++.....-.+....+-..|.++..+|++++|...|...|+.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 34678889999999999999999999988888888899999999999999999999999999999999999998888887
Q ss_pred HHcC-----CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc----hh-------------hhhHHHHHHHHHHHHhcCC
Q psy8682 1684 TNEA-----CLHDALDTLKDKIRPGQESNPRPSAYKADALPS----KL-------------TRLANHTLTFRSPLSSREI 1741 (1956)
Q Consensus 1684 ~~lG-----dydEALe~leKALelg~e~dPd~eay~~Ll~~~----Kl-------------~e~a~a~lnLA~ay~~lGd 1741 (1956)
.... ..+.-...|++.... .|.......+.... .. ...+....++-.+|....+
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK 158 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH
Confidence 3332 466677788877766 55522221111000 00 1122223334444443333
Q ss_pred HHHHHHHHHHHHHh---CC----------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1742 HQQVLSLYLNAARQ---CP----------SQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1742 yeEAle~LekALel---~P----------~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay 1807 (1956)
..-...++...... .. .. .....+++.+|..|...|++++|+.+.++|+...|..++.|...|.++
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil 238 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 33333333333221 10 00 011356788999999999999999999999999999999999999999
Q ss_pred HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh-------chh--ccccchhhh
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD-------GLT--PHGLEPRAV 1878 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d-------A~~--~LG~l~~~l 1878 (1956)
...|++.+|..+++.|-.+++.+-......+..+.+.|+.++|...+....+-+-+... .|+ .-|..+.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888999999999999999988877655431111 222 236666777
Q ss_pred cccHHHH
Q psy8682 1879 KEMSDSI 1885 (1956)
Q Consensus 1879 g~~seAI 1885 (1956)
|++..|+
T Consensus 319 ~~~~~AL 325 (517)
T PF12569_consen 319 GDYGLAL 325 (517)
T ss_pred hhHHHHH
Confidence 7776665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.9e-10 Score=138.52 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=196.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.......+|..+...|-...|+..|++. ..|-....+|...|+..+|.....+-++ .|.++..|..+|.+.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 3446678899999999999999999985 5677899999999999999999999998 677777888888887
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
.+..-|++|.++.+.... .+...+|......++|+++.++++.+++++|-. .
T Consensus 468 ~d~s~yEkawElsn~~sa-------------------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---~ 519 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISA-------------------------RAQRSLALLILSNKDFSEADKHLERSLEINPLQ---L 519 (777)
T ss_pred cChHHHHHHHHHhhhhhH-------------------------HHHHhhccccccchhHHHHHHHHHHHhhcCccc---h
Confidence 777666666666654322 244556667777899999999999999999988 9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
..|+.+|.+..+.++++.|.++|..++.++|++..+|++++.+|...|+-.+|...+.+|++-+-++...|.|.-.+..+
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCC
Q psy8682 1844 LGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPd 1863 (1956)
.|.+++|++.|.+.+.+..+
T Consensus 600 vge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred cccHHHHHHHHHHHHHhhhh
Confidence 99999999999999877544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=140.69 Aligned_cols=145 Identities=10% Similarity=0.034 Sum_probs=137.3
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+....++.+||.+....|++++|...++.++++.|++ ..+...++.++.+++++++|+..+++++..+|+++.+++.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3457889999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
+|.++.++|++++|+.+|++++..+|++..++..+|.++...|+.++|...|++|++...+-...+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998775555443
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-09 Score=137.55 Aligned_cols=222 Identities=15% Similarity=0.156 Sum_probs=193.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~le 1697 (1956)
+.+...|...|-+++++++..+.++..||.+|....+...|..+|++|.++++.+..+....+..|....+++.|...+-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC
Q psy8682 1698 DKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777 (1956)
Q Consensus 1698 KALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG 1777 (1956)
.+-+. .|. ......+..+|-.|.+.+++..|+..|+.+++.+|.+ ...|..+|.+|...|
T Consensus 551 ~~~qk----a~a-------------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD---~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 551 RAAQK----APA-------------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD---YNLWLGLGEAYPESG 610 (1238)
T ss_pred HHhhh----chH-------------HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh---HHHHHHHHHHHHhcC
Confidence 76666 444 1223345568899999999999999999999999999 999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHcCCHHHH
Q psy8682 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG-------FVRARYNLGITCVHLGANTQA 1850 (1956)
Q Consensus 1778 dyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd-------naeA~~~LA~ay~klGdyEEA 1850 (1956)
+|..|++.|.+|..++|.+....+..+......|+|.+|+..+...+..... .++.+..++..+...|=+..|
T Consensus 611 ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ka 690 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKA 690 (1238)
T ss_pred ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999998876544 345556666666666666667
Q ss_pred HHHHHHHHH
Q psy8682 1851 VEHFLTALN 1859 (1956)
Q Consensus 1851 ie~yekALe 1859 (1956)
..+++++++
T Consensus 691 vd~~eksie 699 (1238)
T KOG1127|consen 691 VDFFEKSIE 699 (1238)
T ss_pred hHHHHHHHH
Confidence 777666654
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-08 Score=127.64 Aligned_cols=288 Identities=14% Similarity=0.106 Sum_probs=217.2
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
++|...+.. .+..+.-.|.++ +.+-..|..+...|+-++|..+.+.++..++....+|+.+|.++...++|++|
T Consensus 21 kQYkkgLK~--~~~iL~k~~eHg----eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 21 KQYKKGLKL--IKQILKKFPEHG----ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHhHHHH--HHHHHHhCCccc----hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 456665655 455555445544 48889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~ 1738 (1956)
+++|+.|+.++|+|...+..++.+...+++++.....-.+.++. .|. .-..|...|.++..
T Consensus 95 iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----~~~---------------~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 95 IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----RPS---------------QRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhh---------------hHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 555 23346778899999
Q ss_pred cCCHHHHHHHHHHHHHhC---CCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1739 REIHQQVLSLYLNAARQC---PSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~---P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
.|++..|...++...+.. |.. ............++...|.+++|.+.+..--..--+........|.++.+++++
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 999999999888877665 322 011234455566777888888888877654333333444556678999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV-EHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi-e~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
++|+..|...+..+|++...+..+-.++.+-.+.-+++ ..|...-+..|. ...-..++.....-.+..+.+..+++.-
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHH
Confidence 99999999999999999999888888886333344444 555555444444 2333333333333344455555555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.2e-10 Score=114.81 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=112.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+.|++++..+|++ ..+...+|..+...|++++|+..+++++..+|.++.++..+|.++..+|++++|+.+|++++..
T Consensus 4 ~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 4 ATLKDLLGLDSEQ---LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hhHHHHHcCChhh---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
+|.+...++.+|.++...|++++|+..|+++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999998765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=131.89 Aligned_cols=190 Identities=16% Similarity=0.245 Sum_probs=148.4
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHH
Q psy8682 719 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRK 798 (1956)
Q Consensus 719 ~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RA 798 (1956)
.+-++.||. |-+.|..|+.-+... .++++|+.|++.+..||..+..|..|++.+. +....++.
T Consensus 10 ~~rie~nP~---di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El-------------~skdfe~V 72 (656)
T KOG1914|consen 10 RERIEENPY---DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIEREL-------------ASKDFESV 72 (656)
T ss_pred HHHHhcCCc---cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-------------HhhhHHHH
Confidence 566788997 999999998877766 9999999999999999999999999997665 33345567
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHH-cCCHHHHHHHH----HHhhc---ccCCCHHHHHHHHHHHH---------HcC
Q psy8682 799 RKAFEDNIRKNRMVISNWIKYAQWEES-QKQVDRARSIY----ERALD---VDHRNITLWLKYTELEM---------RNR 861 (1956)
Q Consensus 799 R~lyEraL~~~~~s~~lWlkYAqfE~~-~Gd~ErARsIf----ERALs---~~Pk~~dLWl~YadfE~---------k~g 861 (1956)
.++|.|||.+ ..+.++|.-|..+-.+ .|+....|... +=++. ..+++..||..|+.|-. .+.
T Consensus 73 EkLF~RCLvk-vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q 151 (656)
T KOG1914|consen 73 EKLFSRCLVK-VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ 151 (656)
T ss_pred HHHHHHHHHH-HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH
Confidence 7899999998 6779999999999664 55555555544 43443 57899999999999832 223
Q ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-------------CHHHHHHHHHhhc-------------c-----
Q psy8682 862 QVNHARNLWDRAVTILPR-ANQFWYKYTYMEEMLE-------------NVAGKLFVFHRDS-------------I----- 909 (1956)
Q Consensus 862 nierARsLFERAL~~~Pk-s~~LW~kYidfE~k~G-------------d~e~aR~VfERAL-------------~----- 909 (1956)
.++.+|.+|.||+...-. ..++|..|..||...+ +..+||+++.... |
T Consensus 152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 788999999999985333 3899999999998742 3467777776532 1
Q ss_pred ---CchHHHHHHHHhhcccc
Q psy8682 910 ---SQVTLWLGALTLSLEGL 926 (1956)
Q Consensus 910 ---~~~~LWl~Yi~fEle~~ 926 (1956)
...++|+.||+.|.+.+
T Consensus 232 ~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 12458999999998874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-08 Score=117.52 Aligned_cols=250 Identities=18% Similarity=0.155 Sum_probs=196.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD-NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPd-naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
..-++..-+.+.-.+|+++.|-.++.++-+..++ ...+...++.++...|+++.|.....++++..|.++.++.....+
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~ 196 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRA 196 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 4457777788889999999999999999988544 456788899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCC-----chhhhhhcCcc------------------hhhhhHHHHHHHHHHHHhc
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPR-----PSAYKADALPS------------------KLTRLANHTLTFRSPLSSR 1739 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd-----~eay~~Ll~~~------------------Kl~e~a~a~lnLA~ay~~l 1739 (1956)
|...|++.+...++.+.-+.+.-.++. ...|..++... +....+.....++.-+...
T Consensus 197 y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 197 YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 999999999999988877663222332 11121111110 1233344455667778889
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~ 1819 (1956)
|+.++|.+...++++..-+. .....++. ..-+++..=++..++.++..|+++.++..||..+.+.+.+.+|..+
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~----~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDP----RLCRLIPR--LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred CChHHHHHHHHHHHHhccCh----hHHHHHhh--cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998876654 32222222 3568888888888999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1820 YHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1820 yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
|+.|++..|+ ...+..+|.++.++|+..+|.+.+++++.+
T Consensus 351 leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 351 LEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9998888775 566788899999999999999999988854
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.2e-09 Score=138.17 Aligned_cols=226 Identities=10% Similarity=0.007 Sum_probs=169.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----------
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---------- 1673 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---------- 1673 (1956)
..+++..++..+...+++++|+..++.+++..|+...+++.+|.++.+.+++.+|.-. .++...+.+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 6679999999999999999999999999999999999999999999999988776655 5555544443
Q ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHH
Q psy8682 1674 ---------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQ 1744 (1956)
Q Consensus 1674 ---------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeE 1744 (1956)
.+++.||.||..+|+.++|...|+++++. +|+ .+.+..++|..|... ++++
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----D~~---------------n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA----DRD---------------NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----Ccc---------------cHHHHHHHHHHHHHh-hHHH
Confidence 77888888888888888888888888888 555 455667777777777 8888
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------------HHHHH
Q psy8682 1745 VLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL--------------------WNRLG 1804 (1956)
Q Consensus 1745 Ale~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA--------------------~~nLG 1804 (1956)
|+.++.+|+.. +...++|.++..++.+.+..+|.+... +.-+=
T Consensus 168 A~~m~~KAV~~-----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 168 AITYLKKAIYR-----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHH-----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 88888877654 334456666666666666666664432 22233
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhcCCC
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL--------------------GANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl--------------------GdyEEAie~yekALeLdPdn 1864 (1956)
..|...+++++++..++.+++.+|.+..+...++.+|... ..+..|+..|++.+..++++
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCC
Confidence 6677788888888888888888888888888888887632 12456667777777777765
Q ss_pred hhch
Q psy8682 1865 HDGL 1868 (1956)
Q Consensus 1865 ~dA~ 1868 (1956)
.-.+
T Consensus 311 yv~H 314 (906)
T PRK14720 311 FVYH 314 (906)
T ss_pred EEEE
Confidence 5433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-09 Score=139.01 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1744 EAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+++.-+.......|.+ +.++.+||.+....|.+++|...++.++++.|++..++.+++.++.+++++++|+..++++
T Consensus 70 ~~~~~~~~~~~~~~~~---~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 70 AALPELLDYVRRYPHT---ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred hhHHHHHHHHHhcccc---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333344444557777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1824 LQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1824 LeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+..+|++..+++.+|.++.++|++++|+.+|++++..+|+++.++..+|.++...|+..+|. ..++.|+...+..
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~~~~~~~ 221 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGLDAIGDG 221 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999998887 7788887777654
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=136.66 Aligned_cols=113 Identities=19% Similarity=0.379 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHH
Q psy8682 796 HRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEM-RNRQVNHARNLWDRAV 874 (1956)
Q Consensus 796 ~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~-k~gnierARsLFERAL 874 (1956)
..+|.+|..+|...|.+..+|.+||.+|.+.|..+.+..||||+|...|.+++||..|+.+.. ..|+.+..|.+||+|+
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999855 4688888999999999
Q ss_pred HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 875 TILPRA---NQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 875 ~~~Pks---~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
...... ..||.+||+||..+++..++-.||+|.|
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL 178 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 976653 8999999999999999999999999988
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-09 Score=138.33 Aligned_cols=232 Identities=9% Similarity=-0.009 Sum_probs=190.4
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCch-
Q psy8682 1633 KQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS- 1711 (1956)
Q Consensus 1633 eldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~e- 1711 (1956)
..+|.+..++..|+..|...+++++|+..++.+++..|+...+++.+|.++...+++.+|... .++.. .+...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----~~~~~~ 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----FSQNLK 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh----cccccc
Confidence 346889999999999999999999999999999999999999999999999999999998887 66666 33211
Q ss_pred ------hhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1712 ------AYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1712 ------ay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
.+..+. ..+..-.+++.+|.+|.++|+.++|...|+++++.+|++ +.+++++|..|... +.++|+.+
T Consensus 99 ~~~ve~~~~~i~---~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 99 WAIVEHICDKIL---LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN---PEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred hhHHHHHHHHHH---hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHh-hHHHHHHH
Confidence 111121 124555688999999999999999999999999999999 99999999999999 99999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH--------------------HHHHHHHHHHcC
Q psy8682 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA--------------------RYNLGITCVHLG 1845 (1956)
Q Consensus 1786 fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA--------------------~~~LA~ay~klG 1845 (1956)
+.+|+.. +...++|.++..++.+.+..+|++.+. +.-+-..|...+
T Consensus 172 ~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 172 LKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred HHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 9999876 666778999999999999888886543 222337788889
Q ss_pred CHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHh
Q psy8682 1846 ANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRG 1891 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~ 1891 (1956)
++++++..++.+|+.+|+|..+...++.+|...-.-...+..+++.
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~ 283 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKM 283 (906)
T ss_pred hhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHH
Confidence 9999999999999999999999998888876432222334444443
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-09 Score=132.88 Aligned_cols=218 Identities=18% Similarity=0.169 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
....-..+|.++...|-...|+..|++. ..|.....||...|+..+|.....+-++. +|+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d-------- 456 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK----DPD-------- 456 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCc--------
Confidence 3445678999999999999999999885 36778889999999999999999998886 555
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
+..|..+|+.-.=-.+|+++.++...- ...+...+|......++|.+|.++++..++++|-..
T Consensus 457 ---------------~~lyc~LGDv~~d~s~yEkawElsn~~--sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 457 ---------------PRLYCLLGDVLHDPSLYEKAWELSNYI--SARAQRSLALLILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred ---------------chhHHHhhhhccChHHHHHHHHHhhhh--hHHHHHhhccccccchhHHHHHHHHHHHhhcCccch
Confidence 233444444444445555665554331 255677778878889999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
..|+.+|.+..+.+++..|.++|.+++.+.|++..+|.+++.+|.++|+..+|...+++|++.+-++...|-|.-.+...
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHhc
Q psy8682 1878 VKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1878 lg~~seAIws~Lr~A 1892 (1956)
.|+.++++..+-+..
T Consensus 600 vge~eda~~A~~rll 614 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLL 614 (777)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999985555543
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=125.34 Aligned_cols=134 Identities=28% Similarity=0.277 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..+..-|.-+++.++|.+|+..|.+|++++|.+ +..|.++|.+|.++|+|+.|++.++.|+.++|....+|..|
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 345566778999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHh
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT---QAVEHFLTALNQ 1860 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyE---EAie~yekALeL 1860 (1956)
|.+|..+|++++|++.|+++|+++|++.....+|..+-.++++.. .+...++.+..+
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 999999999999999999999999999998889988888887766 444444444333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-08 Score=115.06 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=72.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHH
Q psy8682 1652 NEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLT 1731 (1956)
Q Consensus 1652 lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ln 1731 (1956)
.++.++++..++++++.+|++..+|..+|.+|...|++++|+..|++++++ +|+ ....+..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l----~P~---------------~~~~~~~ 112 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL----RGE---------------NAELYAA 112 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC---------------CHHHHHH
Confidence 455566666666666666666666666666666666666666666666666 444 2334445
Q ss_pred HHHHH-HhcCC--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1732 FRSPL-SSREI--HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1732 LA~ay-~~lGd--yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
+|.++ ...|+ +++|...++++++.+|++ ..++..+|.++...|++++|+.+++++++..|.
T Consensus 113 lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 113 LATVLYYQAGQHMTPQTREMIDKALALDANE---VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55543 34444 355666666666666655 555566666666666666666666666555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-08 Score=130.67 Aligned_cols=307 Identities=12% Similarity=-0.044 Sum_probs=209.3
Q ss_pred hhhHHHHHhchhhHhHhhhhcc-----CCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAED-----NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-----AEVWLSLGI 1647 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~-----NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn-----aeAl~~LA~ 1647 (1956)
.++++++... +..+...... .+.........+|..+...|++++|...+++++...+.. ..+...+|.
T Consensus 422 ~g~~~~a~~~--l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 422 QHRYSEVNTL--LARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred CCCHHHHHHH--HHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 3455665555 4444432221 122234556668889999999999999999999865442 235678899
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcch
Q psy8682 1648 SLAENEQDPQAIAALSKCLSIEPKN------LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK 1721 (1956)
Q Consensus 1648 ay~~lGdyeEALe~yeKALeLdPdn------aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~K 1721 (1956)
++...|++++|...+.+++...... ..++..+|.++...|++++|...+++++.. ........
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~----------~~~~~~~~- 568 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL----------IEEQHLEQ- 568 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HHHhcccc-
Confidence 9999999999999999998764321 235678899999999999999999999987 11111000
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy8682 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD--- 1796 (1956)
Q Consensus 1722 l~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn--- 1796 (1956)
.+.....+..+|.++...|++++|...+.+++...... ......+..+|.++...|++++|...+.++..+....
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 01122335568899999999999999999998764321 1124566778999999999999999999997753321
Q ss_pred HHHHH----HHHHHHHHCCChHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----
Q psy8682 1797 SRLWN----RLGASLANGNRPEEAVEAYHTALQLSPGFV----RARYNLGITCVHLGANTQAVEHFLTALNQQAA----- 1863 (1956)
Q Consensus 1797 aeA~~----nLG~ay~qlGryeEAie~yeKALeL~Pdna----eA~~~LA~ay~klGdyEEAie~yekALeLdPd----- 1863 (1956)
..... .....+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++.....
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 11111 122344557788888877766554322211 12456788888888888888888888776322
Q ss_pred -ChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1864 -THDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1864 -n~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
...++..+|.++...|+..++. ..+..|+.+...
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~la~~ 763 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCc
Confidence 2235667777778888876666 677777666544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=127.40 Aligned_cols=257 Identities=14% Similarity=0.055 Sum_probs=186.7
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
..|+|.|..++.. ++ ..+.++....+..+.+.+++..+|+++..+.-... ..+....+...++..+...++
T Consensus 11 ~fy~G~Y~~~i~e--~~----~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 11 QFYLGNYQQCINE--AS----LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHCTT-HHHHCHH--HH----CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTT
T ss_pred HHHhhhHHHHHHH--hh----ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccc
Confidence 4678899999865 22 33445554677888899999999998877655543 223344566677776665566
Q ss_pred hHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIEP--KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1655 yeEALe~yeKALeLdP--dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
.+.++..++..+.... .+.......|.++...|++++|++.+.+.- ..+.....
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~------------------------~lE~~al~ 137 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG------------------------SLELLALA 137 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT------------------------CHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC------------------------cccHHHHH
Confidence 6777776665543332 344556667788888999999987765431 12233445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD--EYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG--dyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
..++...++++.|.+.++.+.+.+.+. ..+....|.+....| ++.+|...|++.....+..+.+++.++.+++.+
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~---~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDEDS---ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCCH---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 688999999999999999998887765 434444444544555 699999999998888888999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCCChhc
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN-TQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdy-EEAie~yekALeLdPdn~dA 1867 (1956)
|++++|...+.+++..+|+++.++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999999999999999999998 66778888888899997753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-07 Score=120.09 Aligned_cols=277 Identities=11% Similarity=0.045 Sum_probs=194.0
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-- 1653 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-- 1653 (1956)
.-.++|++|+.. +.+.... -......+-.+|.++.+.|++++|...|+..++.+|++...+..+..+.....
T Consensus 15 ~e~g~~~~AL~~--L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 15 EEAGDYEEALEH--LEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHCCCHHHHHHH--HHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 334677888876 4332222 22144577789999999999999999999999999999999999988884333
Q ss_pred ---ChHHHHHHHHHHHHhCCCCHH--------------------------------HHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1654 ---QDPQAIAALSKCLSIEPKNLE--------------------------------ALMAISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1654 ---dyeEALe~yeKALeLdPdnae--------------------------------Al~~LA~aY~~lGdydEALe~leK 1698 (1956)
..+.-...|+......|.... ...++-.+|....+..-....+..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 456667888877666664321 111222222211111111112222
Q ss_pred HHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC
Q psy8682 1699 KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDE 1778 (1956)
Q Consensus 1699 ALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGd 1778 (1956)
.+... ............. ........++++.+|..|...|++++|+++++++++..|.. ++.+...|.++...|+
T Consensus 169 ~~~~l-~~~~~~~~~~~~~-~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 169 YVNSL-ESNGSFSNGDDEE-KEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGD 243 (517)
T ss_pred HHHhh-cccCCCCCccccc-cCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCC
Confidence 11110 0000000000000 00011245678899999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--c-------HHHHHHHHHHHHHcCCHHH
Q psy8682 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG--F-------VRARYNLGITCVHLGANTQ 1849 (1956)
Q Consensus 1779 yeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd--n-------aeA~~~LA~ay~klGdyEE 1849 (1956)
+.+|...++.|-.+++.+-.+....+..+.+.|+.++|...+..-...+.+ . .......|.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999988876554421 1 1223456999999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy8682 1850 AVEHFLTALNQQAA 1863 (1956)
Q Consensus 1850 Aie~yekALeLdPd 1863 (1956)
|++.|..+.+..-+
T Consensus 324 ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 324 ALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-08 Score=114.94 Aligned_cols=176 Identities=21% Similarity=0.226 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHH
Q psy8682 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS 1737 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~ 1737 (1956)
+...+-+....+|++..+ .+++..+...|+-+.+..+..++... .|+ .......+|....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~----~~~---------------d~~ll~~~gk~~~ 111 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA----YPK---------------DRELLAAQGKNQI 111 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc----Ccc---------------cHHHHHHHHHHHH
Confidence 445555555666777766 77777777777777777766665554 333 1222233667777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
..|++.+|+..++++..+.|++ ..+|..+|.+|.+.|++++|...|.+++++.|+++.+..|+|..|.-.|+++.|.
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTD---WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 7777777777777777777777 7777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLT 1856 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yek 1856 (1956)
.++..+....+.+..+..+|+.+....|++++|.....+
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888777777777777777888888888887777655443
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.4e-08 Score=110.05 Aligned_cols=186 Identities=13% Similarity=0.166 Sum_probs=140.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
++.-..+-....+....|+.+-|..++++.....|.+..+....|..+...|.+++|+++|+..++. +|. .
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d----dpt---~-- 119 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED----DPT---D-- 119 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc----Ccc---h--
Confidence 3334455566666777788888888888877777888777777788888888888888888888877 666 1
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
...+...-.+...+|+..+|++.+...++.++.+ .++|..++.+|...|+|++|.-||++.+-+.|.
T Consensus 120 ----------~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D---~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~ 186 (289)
T KOG3060|consen 120 ----------TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND---QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF 186 (289)
T ss_pred ----------hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC
Confidence 1112233345556777778888888888888888 888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1796 DSRLWNRLGASLANGN---RPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1796 naeA~~nLG~ay~qlG---ryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
++..+..+|.+++-+| ++.-|.++|.++++++|.+..+++.+-.+...
T Consensus 187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 187 NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 8888888888887665 46678888888888888777777766555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-08 Score=112.85 Aligned_cols=177 Identities=20% Similarity=0.212 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1623 SAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1623 EAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
.+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|+|.+|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3555666666778888888 888888888888888888888888888888888878888888888888888888888888
Q ss_pred CCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1703 GQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1703 g~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
.|+ ...++..+|.+|.+.|++++|...|.+++++.|.+ +.+..++|..|...|+++.|
T Consensus 130 ----~p~---------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 130 ----APT---------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE---PSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred ----CCC---------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC---chhhhhHHHHHHHcCCHHHH
Confidence 555 45566778888888888888888888888888888 88889999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHT 1822 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeK 1822 (1956)
..++..+....+.+..+..+|+.+...+|++++|...-.+
T Consensus 188 ~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 188 ETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999998888888888999999999999999888776554
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-09 Score=124.70 Aligned_cols=119 Identities=20% Similarity=0.336 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
.-+-.-|.-+++.++|.+|+..|.+||+++|.++..|.+.|.+|.++|.++.|++.++.|+.++|.+..+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34555677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccH
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMS 1882 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~s 1882 (1956)
+|++++|++.|++||.++|++...+.+|..+...+++..
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988888877665555443
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-07 Score=108.09 Aligned_cols=183 Identities=11% Similarity=0.017 Sum_probs=159.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHH
Q psy8682 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLS 1747 (1956)
Q Consensus 1668 LdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle 1747 (1956)
+.++.-..+-....+....|+.+-|..++++.-.. .|. - .......|..+...|++++|++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----fp~---S------------~RV~~lkam~lEa~~~~~~A~e 107 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----FPG---S------------KRVGKLKAMLLEATGNYKEAIE 107 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----CCC---C------------hhHHHHHHHHHHHhhchhhHHH
Confidence 44555666777788888999999999999998877 555 1 1223345788889999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1748 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1748 ~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
+|+..+.-+|.+ ..++-..-.+...+|+.-+|++.+.+.++..+.+.++|..++.+|...|+|++|.-+|++.+-+.
T Consensus 108 ~y~~lL~ddpt~---~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 108 YYESLLEDDPTD---TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHhccCcch---hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 999999999998 77777777788889999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1828 PGFVRARYNLGITCVHLG---ANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1828 PdnaeA~~~LA~ay~klG---dyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
|.++..+..+|.+++-+| +++-|.++|.++++++|.+..+++.+-
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 999999999999998877 577899999999999997777766553
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.2e-08 Score=120.65 Aligned_cols=200 Identities=18% Similarity=0.232 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHH
Q psy8682 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790 (1956)
Q Consensus 711 ~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Ee 790 (1956)
.+.+..+|...+...|- -+--|-++|.+-..-|..+++.++|++++..+|-+..+|+.|..|+.. ..++++.
T Consensus 61 ~~~~r~~y~~fL~kyPl---~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n-----~~~d~~~ 132 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPL---CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKN-----NNGDPET 132 (577)
T ss_pred HHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-----cCCCHHH
Confidence 35566666666655553 677789999999999999999999999999999999999999999872 3456553
Q ss_pred hhHHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcc----cCCCHHHHHHHHHH-------
Q psy8682 791 LRDYQHRKRKAFEDNIRKN---RMVISNWIKYAQWEESQKQVDRARSIYERALDV----DHRNITLWLKYTEL------- 856 (1956)
Q Consensus 791 a~~~~~RAR~lyEraL~~~---~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~----~Pk~~dLWl~Yadf------- 856 (1956)
.|.+||+|+..+ ..+..+|-+|+.||..+++..+.-.||+|.|.. ++...+-|.++++-
T Consensus 133 -------lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~ 205 (577)
T KOG1258|consen 133 -------LRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILL 205 (577)
T ss_pred -------HHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhc
Confidence 567888888766 456799999999999999999999999998872 33344445555332
Q ss_pred ------------HHH-----------------------cCChHHH------------------------HHHHHHHHHh-
Q psy8682 857 ------------EMR-----------------------NRQVNHA------------------------RNLWDRAVTI- 876 (1956)
Q Consensus 857 ------------E~k-----------------------~gnierA------------------------RsLFERAL~~- 876 (1956)
..+ .+..+.+ |..||-.++.
T Consensus 206 ~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikrp 285 (577)
T KOG1258|consen 206 SIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRP 285 (577)
T ss_pred CHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccc
Confidence 000 0001111 1112222221
Q ss_pred ----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhc---cCchHHHHHHHHhhccc
Q psy8682 877 ----LPRA---NQFWYKYTYMEEMLENVAGKLFVFHRDS---ISQVTLWLGALTLSLEG 925 (1956)
Q Consensus 877 ----~Pks---~~LW~kYidfE~k~Gd~e~aR~VfERAL---~~~~~LWl~Yi~fEle~ 925 (1956)
.|-. .+.|..|++|+++.||.+++-.+|+|++ ....++|+.|+++-...
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~ 344 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS 344 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc
Confidence 1211 5568888888888888888888888887 56677888888875553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-07 Score=125.97 Aligned_cols=276 Identities=11% Similarity=0.006 Sum_probs=202.7
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccC-CCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHH
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDN-PMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLG 1646 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~N-P~~daeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA 1646 (1956)
.....++++++... ++.++...+.. ......+...+|..+...|++++|...+++++...... ..++..+|
T Consensus 461 ~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 461 VAINDGDPEEAERL--AELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHhCCCHHHHHHH--HHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34456788888887 77777643322 21123466778999999999999999999998764321 34667889
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSIEPK--------NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeLdPd--------naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++.. ... ..
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~----~~~------~~- 607 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV----LSN------YQ- 607 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----hhc------cC-
Confidence 9999999999999999999886321 1234567889999999999999999999887 111 11
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ----NGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~----~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
.......+..+|.++...|++++|...+.++..+........... ......+...|+.+.|...+.......+
T Consensus 608 ---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 684 (903)
T PRK04841 608 ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF 684 (903)
T ss_pred ---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC
Confidence 012334566789999999999999999999987644320001111 1122445568999999999877665332
Q ss_pred CCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1795 DDS----RLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1795 dna----eA~~nLG~ay~qlGryeEAie~yeKALeL~------PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
... ..+..+|.++...|++++|...+++++... .....++..+|.++...|+.++|..++.+|+++....
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 222 225678999999999999999999998852 1234678899999999999999999999999988654
Q ss_pred h
Q psy8682 1865 H 1865 (1956)
Q Consensus 1865 ~ 1865 (1956)
.
T Consensus 765 g 765 (903)
T PRK04841 765 G 765 (903)
T ss_pred c
Confidence 3
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-08 Score=102.56 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
.....+.+|..+...|++++|+..+++++..+|.+ +.++..+|.++..+|++++|+.++++++..+|.++..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 44567889999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
.++...|++++|+..|+++++++|++....
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999876533
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=122.22 Aligned_cols=258 Identities=12% Similarity=0.042 Sum_probs=187.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1613 QEKLRQGDLPSAILYLEAAAKQEP-DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1613 ~aylk~GdydEAIe~fekALeldP-dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
+.++-.|+|..++.-++ ....++ ........+.+++..+|+++..+.-... ..+....+...++..+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence 45567899999998777 333333 2355778899999999998877655433 223334456667766655456666
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ 1771 (1956)
++..++..+.. ... ..........|.++...|++++|++.+.+. .+ .+.......
T Consensus 85 ~l~~l~~~~~~----~~~-------------~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~---lE~~al~Vq 139 (290)
T PF04733_consen 85 ALEELKELLAD----QAG-------------ESNEIVQLLAATILFHEGDYEEALKLLHKG-----GS---LELLALAVQ 139 (290)
T ss_dssp HHHHHHHCCCT----S----------------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TC---HHHHHHHHH
T ss_pred HHHHHHHHHHh----ccc-------------cccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Cc---ccHHHHHHH
Confidence 66666555433 100 012223455678888999999999988764 34 677778889
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q psy8682 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN--RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849 (1956)
Q Consensus 1772 ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG--ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEE 1849 (1956)
+|..+++++.|.+.++.+-+.+.+...+....+.+....| ++.+|...|++..+..+..+..+..++.++..+|++++
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999998888776666666666666655 69999999999888888889999999999999999999
Q ss_pred HHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1850 AVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1850 Aie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
|...+++++..+|++++++.++..+...+|+..+.+..++.......+.+
T Consensus 220 Ae~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 220 AEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999998999998777767777665555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-08 Score=107.96 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
.+..+.+|..+...|++++|+..|+-+..++|.+...|++||.++..+|++.+|+.+|.+|+.++|+++.+++++|.|+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCC
Q psy8682 1843 HLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPd 1863 (1956)
..|+.+.|.+.|+.|+...-+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999988744
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-08 Score=122.42 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
+...|..++..|++++|+.+|.++++++|.+ +.+++.+|.+|..+|++++|+..+++++.++|+++.+++.+|.+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 4556777777777777777777777777777 7777777777777777777777777777777777777777777777
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.+|++++|+..|+++++++|++..+...++.+..++
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777777777777777777777777777766665544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-06 Score=103.17 Aligned_cols=265 Identities=15% Similarity=0.105 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK-NLEALMAISICF 1683 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd-naeAl~~LA~aY 1683 (1956)
+......|..-+..|+|.+|.....++-+..+...-++..-+.+.-+.|+++.|-.++.++-+..++ ...+...++.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4456677888888999999999999988877777778888889999999999999999999998544 445678899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC------- 1756 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~------- 1756 (1956)
...|++..|.....++++. .|. .. ........+|...|++.+...++.+.-+..
T Consensus 164 l~~~d~~aA~~~v~~ll~~----~pr---~~------------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 164 LNRRDYPAARENVDQLLEM----TPR---HP------------EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred HhCCCchhHHHHHHHHHHh----CcC---Ch------------HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 9999999999999999999 676 22 222334566677777766666655442211
Q ss_pred -------------------------------CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1757 -------------------------------PSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1757 -------------------------------P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
|.. ...+.+...++.-+..+|++++|.+....+++..-+.. ....++
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~ 303 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh
Confidence 110 12255666677778899999999999999998765433 222222
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHH
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDS 1884 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seA 1884 (1956)
...-+++..=++..++.++..|+++..+..||..+.+.+.+.+|..+|+.|++..|+ ...+..+|.++.++|+..++
T Consensus 304 --~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 304 --RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA 380 (400)
T ss_pred --hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence 245688888899999999999999999999999999999999999999999999987 44678888888888888665
Q ss_pred HHHHHHhcc
Q psy8682 1885 IWYSLRGFH 1893 (1956)
Q Consensus 1885 Iws~Lr~Al 1893 (1956)
- ...+.++
T Consensus 381 ~-~~r~e~L 388 (400)
T COG3071 381 E-QVRREAL 388 (400)
T ss_pred H-HHHHHHH
Confidence 4 4444444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8e-08 Score=117.88 Aligned_cols=114 Identities=16% Similarity=0.198 Sum_probs=108.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
+...|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++.++|++..+++.+|.+|..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCChhchhccccchhhhc
Q psy8682 1846 ANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVK 1879 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg 1879 (1956)
++++|+.+|++++.++|+++.+...++.+...+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888766553
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.8e-07 Score=110.21 Aligned_cols=309 Identities=10% Similarity=0.041 Sum_probs=197.8
Q ss_pred HHHHHHHHHhcCCCCCChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy8682 1557 NSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEP 1636 (1956)
Q Consensus 1557 q~~we~l~kr~~s~~~~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldP 1636 (1956)
...|..+.+.+ --++|++|+.. ..+.+...|+ +..+....-.++.+.++|++|+...+.-....-
T Consensus 13 ~~l~t~ln~~~---------~~~e~e~a~k~--~~Kil~~~pd----d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~ 77 (652)
T KOG2376|consen 13 EALLTDLNRHG---------KNGEYEEAVKT--ANKILSIVPD----DEDAIRCKVVALIQLDKYEDALKLIKKNGALLV 77 (652)
T ss_pred HHHHHHHHHhc---------cchHHHHHHHH--HHHHHhcCCC----cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh
Confidence 45666666544 35789999987 6677766554 444888999999999999999955443322111
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC---chhh
Q psy8682 1637 DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR---PSAY 1713 (1956)
Q Consensus 1637 dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd---~eay 1713 (1956)
. ....+..|.|.+++++.++|+..++ -+++.+..++...|.+++++|+|++|+..|+..++. +.+ .+.-
T Consensus 78 ~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn----~~dd~d~~~r 149 (652)
T KOG2376|consen 78 I-NSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN----NSDDQDEERR 149 (652)
T ss_pred c-chhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCchHHHHHH
Confidence 1 1223789999999999999999998 456666678888999999999999999999999876 222 0000
Q ss_pred --------------hhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CC-------CCCHHHHH
Q psy8682 1714 --------------KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP-----SQ-------SIDPDVQN 1767 (1956)
Q Consensus 1714 --------------~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P-----~n-------~~~a~a~~ 1767 (1956)
...... ......+.+++.|.++...|+|.+|++.+++++++.. ++ .....+..
T Consensus 150 ~nl~a~~a~l~~~~~q~v~~-v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 150 ANLLAVAAALQVQLLQSVPE-VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHHHHHhhhHHHHHhccC-CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 000000 0123556788999999999999999999999955421 11 01234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------------------------------------------
Q psy8682 1768 GLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL------------------------------------------------ 1799 (1956)
Q Consensus 1768 ~LG~ly~~lGdyeEAie~fekALel~PdnaeA------------------------------------------------ 1799 (1956)
.++.++..+|+.++|...|...++.+|.+...
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88999999999999999999999877654311
Q ss_pred -HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-hhchhccccchhh
Q psy8682 1800 -WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT-HDGLTPHGLEPRA 1877 (1956)
Q Consensus 1800 -~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn-~dA~~~LG~l~~~ 1877 (1956)
+.+.+.+.+..+..+.+.+.....-...|....--........+...+..|.+++...-+-+|.+ ..+...++.+...
T Consensus 309 i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 309 IYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 11222222222222222221111111122221111222222233336777888888887777776 4556666666667
Q ss_pred hcccHHHHHHHHH
Q psy8682 1878 VKEMSDSIWYSLR 1890 (1956)
Q Consensus 1878 lg~~seAIws~Lr 1890 (1956)
+|+...|+ ..+.
T Consensus 389 ~gn~~~A~-~il~ 400 (652)
T KOG2376|consen 389 QGNPEVAL-EILS 400 (652)
T ss_pred cCCHHHHH-HHHH
Confidence 77776666 3343
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.9e-06 Score=85.18 Aligned_cols=226 Identities=27% Similarity=0.352 Sum_probs=194.4
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPD--NAEVWLSLGISLAENEQDPQAIAALSKCLS--IEPKNLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPd--naeAl~~LA~ay~~lGdyeEALe~yeKALe--LdPdnaeAl~~LA~aY~~lGdydEAL 1693 (1956)
.+.+..+...+..++...+. ........+..+...+.+..+...+...+. ..+.....+..++..+...+.+..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57788888889888888776 478889999999999999999999999997 67888889999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHH
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS-PLSSREIHQQVLSLYLNAARQCPS-QSIDPDVQNGLGV 1771 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~-ay~~lGdyeEAle~LekALel~P~-n~~~a~a~~~LG~ 1771 (1956)
..+.+++.. .+. . .......+. ++...|+++.|...+.+++...|. . ........++.
T Consensus 116 ~~~~~~~~~----~~~---~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~ 175 (291)
T COG0457 116 ELLEKALAL----DPD---P------------DLAEALLALGALYELGDYEEALELYEKALELDPELN-ELAEALLALGA 175 (291)
T ss_pred HHHHHHHcC----CCC---c------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc-chHHHHHHhhh
Confidence 999999987 444 1 111222333 899999999999999999887762 1 12566677777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q psy8682 1772 LFNLSDEYDKAVDCFRSALQVRPD-DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850 (1956)
Q Consensus 1772 ly~~lGdyeEAie~fekALel~Pd-naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA 1850 (1956)
.+...+++++|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...+.+++|
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 788899999999999999999999 7999999999999999999999999999999998777888888888888889999
Q ss_pred HHHHHHHHHhcCC
Q psy8682 1851 VEHFLTALNQQAA 1863 (1956)
Q Consensus 1851 ie~yekALeLdPd 1863 (1956)
...+.+++...|.
T Consensus 256 ~~~~~~~~~~~~~ 268 (291)
T COG0457 256 LEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999999998
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-07 Score=109.83 Aligned_cols=242 Identities=17% Similarity=0.114 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
.-.-+|.+++..|+|++|+..|.-+.+.+.-+.+.+.+||-+++-+|.|.+|.....++ |+.+-....+-.+-.+.
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHh
Confidence 44556777777777777777777777766666777777777777777777776655443 44443333333333344
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
++-++-... ...+ .+.......+|.+.+....|++|++.|.+.+.-+|+. ...-
T Consensus 135 ndEk~~~~f-h~~L----------------------qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey---~alN 188 (557)
T KOG3785|consen 135 NDEKRILTF-HSSL----------------------QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY---IALN 188 (557)
T ss_pred CcHHHHHHH-HHHH----------------------hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh---hhhH
Confidence 443332222 2211 2233445678888889999999999999999999987 6667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CChHHH----------------HHHHHH------
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG--NRPEEA----------------VEAYHT------ 1822 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql--GryeEA----------------ie~yeK------ 1822 (1956)
..+|.+|+++.-|+-+.+.+.--++..|+.+.+.+.++..++++ |+..++ ...++.
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFr 268 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFR 268 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEe
Confidence 78899999999999999999999999999998888877766654 333222 111111
Q ss_pred ----HHhhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhccc
Q psy8682 1823 ----ALQLSPG----FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881 (1956)
Q Consensus 1823 ----ALeL~Pd----naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~ 1881 (1956)
|++.-|. -+++..+|+..|.++++.++|+...+ +++|..|.-+...|.+...+|+-
T Consensus 269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhh
Confidence 2222232 36789999999999999999987765 68898888888888888777764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-07 Score=104.84 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=130.8
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHH
Q psy8682 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEV---WLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EAL 1676 (1956)
Q Consensus 1603 ~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeA---l~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl 1676 (1956)
.++..++..|..++..|+|++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 367789999999999999999999999999999988654 58999999999999999999999999998765 578
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc---hhhhhHHHHHHHHHH
Q psy8682 1677 MAISICFTNEA---------------C---LHDALDTLKDKIRPGQESNPRPSAYKADALPS---KLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1677 ~~LA~aY~~lG---------------d---ydEALe~leKALelg~e~dPd~eay~~Ll~~~---Kl~e~a~a~lnLA~a 1735 (1956)
+.+|.++...+ + ..+|+..+++.++. .|+........ .. -....+.-.+.+|..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----yP~S~ya~~A~-~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----YPNSQYTTDAT-KRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----CcCChhHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88888764443 1 34788999999999 78721111110 00 002233334456666
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fe 1787 (1956)
|.+.|.+..|+.-++.+++..|+.....+++..++.+|..+|..++|.....
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 7777777777777777777766664455666666666666666666665543
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.9e-07 Score=111.66 Aligned_cols=230 Identities=15% Similarity=0.155 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~ 1685 (1956)
..++.--..+...|+|++|+....+++...|++..+....-.++.+.++|++|+...+.-....-.+. ..+..|.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence 46666677778899999999999999999999999999999999999999999955544332221111 22789999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV 1765 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a 1765 (1956)
+++.++|+..++-+-.. + .......|.+++++|+|++|++.|+..++.+.++ .+...
T Consensus 92 lnk~Dealk~~~~~~~~----~------------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd-~d~~~ 148 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRL----D------------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD-QDEER 148 (652)
T ss_pred cccHHHHHHHHhccccc----c------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch-HHHHH
Confidence 99999999999832222 1 1234456899999999999999999998877665 22222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--------CC-------
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPD-DSRLWNRLGASLANGNRPEEAVEAYHTALQLS--------PG------- 1829 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~Pd-naeA~~nLG~ay~qlGryeEAie~yeKALeL~--------Pd------- 1829 (1956)
..++-.+-.. -.+ . ..+.+...|. ..+.+++.|.++...|+|.+|++.+++|+.+. .+
T Consensus 149 r~nl~a~~a~----l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~e 222 (652)
T KOG2376|consen 149 RANLLAVAAA----LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEE 222 (652)
T ss_pred HHHHHHHHHh----hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHH
Confidence 2222111100 011 1 3344444454 67889999999999999999999999995431 11
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
-..+...|+.++..+|+.++|...|...++.+|-+.
T Consensus 223 l~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 223 LNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 123678899999999999999999999999988755
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.1e-06 Score=85.11 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAK--QEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI- 1681 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALe--ldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~- 1681 (1956)
.......+..+...+++..+...+...+. ..+.....+...+..+...+++..|+..+.+++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45788899999999999999999999997 688888999999999999999999999999999988877555666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CC
Q psy8682 1682 CFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS-QS 1760 (1956)
Q Consensus 1682 aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~-n~ 1760 (1956)
++...|+++.|...+.+++.. .|. ...........+..+...+++++|+..+.+++...+. .
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 201 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL----DPE------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD- 201 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc----CCC------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc-
Confidence 899999999999999999776 441 0012333445556688899999999999999999988 6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
...+..++..+...+++++|+..+..++...|.....+..++..+...+.+++|...+.+++...|.
T Consensus 202 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 202 --AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7889999999999999999999999999999998888888888888888899999999999999887
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-07 Score=103.70 Aligned_cols=176 Identities=17% Similarity=0.228 Sum_probs=121.3
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHH
Q psy8682 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EAL 1676 (1956)
Q Consensus 1603 ~daeall~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl 1676 (1956)
.+++.++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++.+|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999998875 67899999999999999999999999999998765 578
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCc--chhhhhHHHHHHHHHHHHhcCCHH
Q psy8682 1677 MAISICFTNEA-----------CLHDALDTLKDKIRPGQESNPRPSAYKADALP--SKLTRLANHTLTFRSPLSSREIHQ 1743 (1956)
Q Consensus 1677 ~~LA~aY~~lG-----------dydEALe~leKALelg~e~dPd~eay~~Ll~~--~Kl~e~a~a~lnLA~ay~~lGdye 1743 (1956)
+.+|.++.... ...+|+..|+..+.. .|+..-....... .-....+.--+.+|..|.+.|.+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 88888876543 345899999999998 7771111110000 001223344455677777777777
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1744 EAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
.|+..++.+++..|+......++..++.+|..+|..+.|
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777777777776633344566666666666666633
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.4e-07 Score=104.84 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=97.3
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------CC-------
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ--------------EP------- 1636 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel--------------dP------- 1636 (1956)
+++|++|+.. |..+.. .+++ +++.+.++|.+++-.|.|.+|...-.++-+. +.
T Consensus 70 LgdY~~Al~~--Y~~~~~--~~~~--~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 70 LGDYEEALNV--YTFLMN--KDDA--PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred hccHHHHHHH--HHHHhc--cCCC--CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 6699999988 655553 3333 5779999999999999999999998876321 00
Q ss_pred -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1637 -----DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1637 -----dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
+..+-...||.+.+..-+|++|++.|.+.+.-+|+....-..+|.||+++.-|+-+.+.+.-.++. .|+
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q----~pd 217 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ----FPD 217 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh----CCC
Confidence 111223456777777888999999999999999998888889999999999999999999998888 777
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-07 Score=101.13 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
++..+..+.+|..+...|++++|...|+-+..++|.+ ...|++||.++..+|+|.+|+.+|.+++.++|+++..+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4566778889999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
+|.|++..|+.+.|.+.|+.++...
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=87.87 Aligned_cols=99 Identities=32% Similarity=0.539 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46677888888888888888888888888888788888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhcCC
Q psy8682 1845 GANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPd 1863 (1956)
|++++|..++.+++...|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888877763
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=94.07 Aligned_cols=105 Identities=16% Similarity=0.274 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---HHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF---VRARYN 1836 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn---aeA~~~ 1836 (1956)
+.+++.+|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|+.+|++++...|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3467778888888888888888888888777765 4677778888888888888888888888877764 567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1837 LGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1837 LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
+|.++..+|++++|+.++++++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 8888888888888888888888888876654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=115.39 Aligned_cols=145 Identities=20% Similarity=0.400 Sum_probs=121.3
Q ss_pred CCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHhhcc
Q psy8682 783 QKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQ--------------------VDRARSIYERALDV 842 (1956)
Q Consensus 783 ~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd--------------------~ErARsIfERALs~ 842 (1956)
+.+-..++.+....+.|+ ||--|++...+..-+++|+++|..... ..+...+|.+|+..
T Consensus 22 ~giFt~dEi~~Ivk~Rr~-fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~r 100 (568)
T KOG2396|consen 22 KGIFTRDEIREIVKKRRD-FELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNR 100 (568)
T ss_pred cCCCCHHHHHHHHHHHHH-HHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHh
Confidence 345667777777755444 666677766778889999999964311 24456789999999
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhhc---cCchHHHHHH
Q psy8682 843 DHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLE-NVAGKLFVFHRDS---ISQVTLWLGA 918 (1956)
Q Consensus 843 ~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~G-d~e~aR~VfERAL---~~~~~LWl~Y 918 (1956)
++..+.||..|+.|..+.+.+.++..||..++..+|+.+++|+.-+.+|-..+ +++.||.+|-|+| +.++.||..|
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999898886655 5999999999999 8899999999
Q ss_pred HHhhcccccc
Q psy8682 919 LTLSLEGLGS 928 (1956)
Q Consensus 919 i~fEle~~~~ 928 (1956)
.++|+.+.++
T Consensus 181 frmEL~~~~K 190 (568)
T KOG2396|consen 181 FRMELMYAEK 190 (568)
T ss_pred HHHHHHHHHH
Confidence 9999886543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-06 Score=105.29 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
|....++|..+..++..|++++|+..++..++..|+|+..+...+.++...|+..+|.+.+++++.+ +|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~------ 372 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPN------ 372 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCC------
Confidence 6667777777777777788888887777777777777777777777777777777777777777777 665
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
.....+++|.+|.+.|++++|+..+++.+..+|++ +..|..||..|..+|+..+|...
T Consensus 373 ---------~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d---p~~w~~LAqay~~~g~~~~a~~A---------- 430 (484)
T COG4783 373 ---------SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED---PNGWDLLAQAYAELGNRAEALLA---------- 430 (484)
T ss_pred ---------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHhCchHHHHHH----------
Confidence 12335667777777777777777777777777777 77777777777777776666544
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1796 DSRLWNRLGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1796 naeA~~nLG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
.+..|...|++++|+..+.++.+..
T Consensus 431 -------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 -------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 3445556677777777777776654
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-07 Score=112.76 Aligned_cols=144 Identities=20% Similarity=0.275 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHhhccCCCC----CC-----CCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy8682 750 KAVDCFRSALQVRPDFTELLVYLFSSLDFQPP----KQ-----KISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYA 820 (1956)
Q Consensus 750 kArelFerALkkfP~d~~IWl~ylsfL~~~~~----~~-----ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYA 820 (1956)
+.|..|+--+++......-.+.|+.+...... +. +..-.+ -..-.|+..+|.+++.+++..+.+|..|+
T Consensus 35 k~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd--~si~~rIv~lyr~at~rf~~D~~lW~~yi 112 (568)
T KOG2396|consen 35 KKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSD--DSIPNRIVFLYRRATNRFNGDVKLWLSYI 112 (568)
T ss_pred HHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch--hHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 44555665566555555566666655431000 00 000000 11344678899999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 821 QWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQ-VNHARNLWDRAVTILPRANQFWYKYTYMEEMLE 895 (1956)
Q Consensus 821 qfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k~gn-ierARsLFERAL~~~Pks~~LW~kYidfE~k~G 895 (1956)
.|..+.+.+-+...||..+|..+|..++||+.-+..|...+. ++.||+||-|+|+.+|+++.+|..|.+||..+-
T Consensus 113 ~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 113 AFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876554 999999999999999999999999999998763
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-07 Score=108.54 Aligned_cols=204 Identities=12% Similarity=0.105 Sum_probs=141.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1645 LGISLAENEQDPQAIAALSKCLSIEP--K----NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1645 LA~ay~~lGdyeEALe~yeKALeLdP--d----naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
.|.+|...|++++|.++|.++....- + -...+...+.+|... ++++|+.+|++++.+ |.....
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~----------y~~~G~ 109 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEI----------YREAGR 109 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH----------HHHCT-
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHH----------HHhcCc
Confidence 45666666777777777777655431 1 123455566666555 899999999999988 766552
Q ss_pred cchhhhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSR-EIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~l-GdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
....+..+..+|.+|... |++++|+++|++|++..... ......+..+|.++..+|+|++|+..|+++....-
T Consensus 110 ---~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 110 ---FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp ---HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 345677888999999998 99999999999999875433 12245678899999999999999999999987542
Q ss_pred CC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHH--cCCHHHHHHHHHHHHHh
Q psy8682 1795 DD-------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV-----RARYNLGITCVH--LGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1795 dn-------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna-----eA~~~LA~ay~k--lGdyEEAie~yekALeL 1860 (1956)
++ ...+...+.+++..|++..|...+++....+|... .....|-.++.. ...+.+|+..|+....+
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 21 13456778899999999999999999999888642 344445555443 34577777777766665
Q ss_pred cC
Q psy8682 1861 QA 1862 (1956)
Q Consensus 1861 dP 1862 (1956)
++
T Consensus 267 d~ 268 (282)
T PF14938_consen 267 DN 268 (282)
T ss_dssp -H
T ss_pred HH
Confidence 54
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-06 Score=105.60 Aligned_cols=153 Identities=18% Similarity=0.128 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
|....+++..+..++..|++++|+..++..+.. .|+ ........+.++...++.++|.+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~----~P~---------------N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA----QPD---------------NPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHcCChHHHHHHH
Confidence 677778888898899999999999999888888 666 2233344678888999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
++++.++|.. .....++|.+|.+.|++.+|+..++..+..+|+++..|..||.+|..+|+..+|...+
T Consensus 364 ~kal~l~P~~---~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~--------- 431 (484)
T COG4783 364 KKALALDPNS---PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR--------- 431 (484)
T ss_pred HHHHhcCCCc---cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH---------
Confidence 9999999887 8888888999999999999999999999889999999999999998888877665544
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
+..|...|++++|+..+..+.+..
T Consensus 432 --------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 432 --------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 455666788888888888888765
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=101.45 Aligned_cols=217 Identities=18% Similarity=0.106 Sum_probs=166.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALD 1694 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe 1694 (1956)
+.+..+|.+||+++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+..|..+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 35677899999999999999998888999999999999999999999999999999888888888888999999999998
Q ss_pred HHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy8682 1695 TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFN 1774 (1956)
Q Consensus 1695 ~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~ 1774 (1956)
....+... |. + .......-+.+.+..+++..+..+.++ -|.. ..+....+.|.+.+
T Consensus 100 V~~~~~D~-----~~------L--------~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~e-n~Ad~~in~gClly 155 (459)
T KOG4340|consen 100 VAFLLLDN-----PA------L--------HSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSE-NEADGQINLGCLLY 155 (459)
T ss_pred HHHHhcCC-----HH------H--------HHHHHHHHHHHhcccccCcchHHHHHh----ccCC-Cccchhccchheee
Confidence 87766542 11 0 111122234556667777766665544 3421 23667888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCC----------------c----
Q psy8682 1775 LSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL----SPG----------------F---- 1830 (1956)
Q Consensus 1775 ~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL----~Pd----------------n---- 1830 (1956)
+.|+|++|++-|+.|++...-.+.+-++++.++++.|+++.|+++..+.++. .|. +
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 9999999999999999988888888889999999999999999888777653 232 1
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1831 -----VRARYNLGITCVHLGANTQAVEHFL 1855 (1956)
Q Consensus 1831 -----aeA~~~LA~ay~klGdyEEAie~ye 1855 (1956)
.++.+..+.++++.|+++.|.+.+.
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 2356667788889999988876543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-06 Score=98.08 Aligned_cols=183 Identities=14% Similarity=0.015 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA---LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeA---l~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.+..++..|..+...|++++|+..|++++...|....+ .+.+|.+|...+++++|+..+++.++. .|+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~----~P~----- 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----NPT----- 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CcC-----
Confidence 45566667777777777777777777777777766543 366677777777777777777777776 666
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREI------------------HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGd------------------yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l 1776 (1956)
.+....+++.+|.++...++ ..+|+..|++.++..|++.....+...+..+...
T Consensus 102 -------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 102 -------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred -------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence 44566666666666555541 1345566666666666651112222211111111
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF---VRARYNLGITCVHLGANTQAVEH 1853 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn---aeA~~~LA~ay~klGdyEEAie~ 1853 (1956)
-+.--..+|..|.+.|+|..|+.-++.+++..|+. .++++.++.+|..+|..++|...
T Consensus 174 -------------------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 174 -------------------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred -------------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 01122356788888999999999999999887764 56888899999999999988776
Q ss_pred HHH
Q psy8682 1854 FLT 1856 (1956)
Q Consensus 1854 yek 1856 (1956)
...
T Consensus 235 ~~~ 237 (243)
T PRK10866 235 AKI 237 (243)
T ss_pred HHH
Confidence 543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.5e-07 Score=90.35 Aligned_cols=109 Identities=16% Similarity=0.225 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q psy8682 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRL 1803 (1956)
Q Consensus 1727 ~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nL 1803 (1956)
..++.+|..+...|++++|+..|.+++...|++.....+++.+|.++...|++++|+.+|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4678899999999999999999999999998763446789999999999999999999999999998875 6789999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
|.++..+|++++|+..++++++..|++..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999999999999999999876443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-06 Score=103.85 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=31.1
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHh
Q psy8682 720 NAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFS 774 (1956)
Q Consensus 720 ~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~yls 774 (1956)
+-++-||. |--.|.+|+.-|...+.+++-|+.|+.+..-||--+..|..|++
T Consensus 33 erIkdNPt---nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s 84 (660)
T COG5107 33 ERIKDNPT---NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMS 84 (660)
T ss_pred HHhhcCch---hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhc
Confidence 34555554 55556666666666666666666666666666655666666653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=98.21 Aligned_cols=171 Identities=12% Similarity=0.103 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1639 AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1639 aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
+..++..|..++..|++.+|+..|++++...|... .+.+.+|.+++..|++++|+..+++.++. .|+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~----yP~------ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL----YPN------ 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TT------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCC------
Confidence 34455555555555555555555555555555532 34455555555555555555555555555 444
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
.+....+++.+|.++.....-. + ......+...+|+..|+..+...|+
T Consensus 75 ------~~~~~~A~Y~~g~~~~~~~~~~---------~-----------------~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 75 ------SPKADYALYMLGLSYYKQIPGI---------L-----------------RSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp -------TTHHHHHHHHHHHHHHHHHHH---------H------------------TT---HHHHHHHHHHHHHHHH-TT
T ss_pred ------CcchhhHHHHHHHHHHHhCccc---------h-----------------hcccChHHHHHHHHHHHHHHHHCcC
Confidence 2334444555555444432211 0 0000011123444555555555444
Q ss_pred CH-----------------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHHH
Q psy8682 1796 DS-----------------RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV---RARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1796 na-----------------eA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna---eA~~~LA~ay~klGdyEEAi 1851 (1956)
+. .--..+|..|.+.|.+..|+..++.+++..|+.. .++..++.+|.++|..+.|.
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 32 1123467788888888888888888888888753 56778888888888877543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-07 Score=83.38 Aligned_cols=96 Identities=22% Similarity=0.398 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
+++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|+..|++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q psy8682 1687 ACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1687 GdydEALe~leKALel 1702 (1956)
|++++|...+.+++..
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999999999887
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-07 Score=99.21 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHH
Q psy8682 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1742 yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie 1818 (1956)
+..+...+...++..+.. .....++.+|.++..+|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRILPTTSGE-KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhccCCchh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444433333 235667788888888888888888888888776552 3578888888888888888888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhcCCC
Q psy8682 1819 AYHTALQLSPGFVRARYNLGITCV-------HLGANT-------QAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1819 ~yeKALeL~PdnaeA~~~LA~ay~-------klGdyE-------EAie~yekALeLdPdn 1864 (1956)
+|++++.+.|.....+.++|.++. .+|+++ +|+.+|++++..+|.+
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 888888888888777777777777 666766 5566666777777763
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.7e-07 Score=98.53 Aligned_cols=102 Identities=25% Similarity=0.330 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ 1839 (1956)
..+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.+|++++...|.+..++..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3344444444444555555555555554443331 2344445555555555555555555555555544444444454
Q ss_pred HHHHcCC--------------HHHHHHHHHHHHHhcCCC
Q psy8682 1840 TCVHLGA--------------NTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1840 ay~klGd--------------yEEAie~yekALeLdPdn 1864 (1956)
++...|+ +++|++++++++.++|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 4444444 678888899999989885
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-06 Score=93.26 Aligned_cols=197 Identities=17% Similarity=0.075 Sum_probs=147.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+..++.+|..|-..|-..-|...|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHhCCCCCCC
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY-LNAARQCPSQSID 1762 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L-ekALel~P~n~~~ 1762 (1956)
+.-|++.-|.+.+.+..+. +|+ +.|+.++ . .+-...-++.+|...+ +++.+.+.+.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~----D~~-DPfR~LW------------L---Yl~E~k~dP~~A~tnL~qR~~~~d~e~--- 200 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQD----DPN-DPFRSLW------------L---YLNEQKLDPKQAKTNLKQRAEKSDKEQ--- 200 (297)
T ss_pred eecCchHhhHHHHHHHHhc----CCC-ChHHHHH------------H---HHHHhhCCHHHHHHHHHHHHHhccHhh---
Confidence 9999999999999999888 776 2344433 1 1112344666676544 4444433332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-------SRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn-------aeA~~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
..|+..+ +.+|+.. -...++++.....++ .++++.||..+...|+.++|...|+-++..+-
T Consensus 201 -WG~~iV~---~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 201 -WGWNIVE---FYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred -hhHHHHH---HHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2222211 1223321 122333333333332 46788899999999999999999998887543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=94.96 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=99.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAIS 1680 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA 1680 (1956)
.+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|++++...|++..++..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 67789999999999999999999999999887653 568999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
.++...|+...|...+.+++.. +++|++++++++..+|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~---------------------------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEAL---------------------------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHH---------------------------------------HHHHHHHHHHHHhhCchh
Confidence 9999998877766555544332 466777788888877775
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=85.46 Aligned_cols=67 Identities=33% Similarity=0.568 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC
Q psy8682 1796 DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG-ANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1796 naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG-dyEEAie~yekALeLdP 1862 (1956)
++.+|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777766
|
... |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-07 Score=105.84 Aligned_cols=144 Identities=16% Similarity=0.361 Sum_probs=118.8
Q ss_pred CCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH----------------------HHHHHHHHhhc
Q psy8682 784 KISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVD----------------------RARSIYERALD 841 (1956)
Q Consensus 784 ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~E----------------------rARsIfERALs 841 (1956)
.+-.++|.+.. -+.|..||.-|.+...+..-+++|+++|.....+. +.-.+|.|+..
T Consensus 23 giFs~dE~~~I-vktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tn 101 (435)
T COG5191 23 GIFSPDELRRI-VKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTN 101 (435)
T ss_pred CCCCHHHHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhh
Confidence 45556666544 46788899988885566777999999996432221 22235567878
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhhc---cCchHHHHH
Q psy8682 842 VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEE-MLENVAGKLFVFHRDS---ISQVTLWLG 917 (1956)
Q Consensus 842 ~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~kYidfE~-k~Gd~e~aR~VfERAL---~~~~~LWl~ 917 (1956)
.+|..+++|.+|+.+..+.|.+.....||-.+++.+|..+++|+.-.+||- .++|++.+|.+|.++| +.++.||..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 899999999999999999999999999999999999999999998888884 6899999999999999 888999999
Q ss_pred HHHhhcccccc
Q psy8682 918 ALTLSLEGLGS 928 (1956)
Q Consensus 918 Yi~fEle~~~~ 928 (1956)
|.+||+..+++
T Consensus 182 yfr~El~yiTK 192 (435)
T COG5191 182 YFRMELMYITK 192 (435)
T ss_pred HHHHHHHHHHH
Confidence 99999998744
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-06 Score=99.61 Aligned_cols=267 Identities=15% Similarity=0.045 Sum_probs=167.1
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
.+|+++|.. +..- ...+|. +...+..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|
T Consensus 24 ~ry~DaI~~--l~s~---~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 24 ARYADAIQL--LGSE---LERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred hhHHHHHHH--HHHH---HhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 467888876 2222 334454 5558889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~ 1738 (1956)
+.........+.-....+..-+.+.+..+++..+....++.-. ...+....+.|.+.++
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---------------------en~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---------------------ENEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC---------------------CCccchhccchheeec
Confidence 9887665432100111222223333334444444333332211 1234455667777778
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC----------------C--
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR----PD----------------D-- 1796 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~----Pd----------------n-- 1796 (1956)
.|++++|.+-|+.+++...-+ +.+-++++.+++..|+|+.|+++..+.++.. |. +
T Consensus 157 egqyEaAvqkFqaAlqvsGyq---pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 888888888888887776655 6667777778888888888877776666532 21 1
Q ss_pred -------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1797 -------SRLWNRLGASLANGNRPEEAVEAYHTALQLSP--GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1797 -------aeA~~nLG~ay~qlGryeEAie~yeKALeL~P--dnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
.++.+..+.++++.|+++.|.+.+...--... -++..+.+++..- ..+++.+..+-+.-.+.++|--++.
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHH
Confidence 13455566677777777777665543221111 1344455554432 2344555555566666666654455
Q ss_pred hhccccchh
Q psy8682 1868 LTPHGLEPR 1876 (1956)
Q Consensus 1868 ~~~LG~l~~ 1876 (1956)
..++-.++.
T Consensus 313 FANlLllyC 321 (459)
T KOG4340|consen 313 FANLLLLYC 321 (459)
T ss_pred HHHHHHHHh
Confidence 555544443
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=100.20 Aligned_cols=243 Identities=15% Similarity=0.126 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CC--CHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIE----PK--NLEALM 1677 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLd----Pd--naeAl~ 1677 (1956)
.....|..++...++.+|+....+.+..-.+. ...+-.+..+..++|.|++++..--..+... .. ..+++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999988764433 2345556678888999988876654443332 11 235788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
+++..+...-++.+++.+.+..+.+ ++..|. ..-......++.++..++.++++++.|+.|++...
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~-------------~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~ 153 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGL-PGTRAG-------------QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH 153 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcc-------------cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988887 222221 01123445689999999999999999999998865
Q ss_pred CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1758 SQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD----D------SRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1758 ~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd----n------aeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
++ .....++..||.+|....++++|.-+..+|.++-.. + ..+++.++.++..+|+...|.++.+++.
T Consensus 154 ~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 154 NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 43 244578899999999999999999999999886432 1 2467889999999999999999999998
Q ss_pred hhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1825 QLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1825 eL~------PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
++. +-.+....-+|.+|...|+.+.|..-|++|......
T Consensus 234 klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 234 KLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 763 234567788999999999999999999999987665
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-06 Score=93.63 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..++.+|.++...|++++|+..|++++.+.|+....+.++.++|.++...|++++|+.+|++++.+.|.....+.++
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 45677889999999999999999999999998776412356899999999999999999999999999999999999999
Q ss_pred HHHHH-------HCCChH-------HHHHHHHHHHhhCCCcH
Q psy8682 1804 GASLA-------NGNRPE-------EAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1804 G~ay~-------qlGrye-------EAie~yeKALeL~Pdna 1831 (1956)
|.++. .+|+++ +|+..|++++..+|.+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 98888 777877 55555556666777543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-06 Score=90.38 Aligned_cols=124 Identities=19% Similarity=0.102 Sum_probs=106.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHC
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANG 1810 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~ql 1810 (1956)
......++...+...++..++.+|+......+...+|.++...|++++|+..|++++...|+. ..+...||.++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 333468999999999999999999874456778889999999999999999999999987664 45788999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekAL 1858 (1956)
|++++|+..++. +...+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 99 ~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 GQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999966 33344456788899999999999999999999885
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-06 Score=108.96 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=112.2
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCC
Q psy8682 1730 LTFRSPLSSRE---IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD--------EYDKAVDCFRSALQV--RPDD 1796 (1956)
Q Consensus 1730 lnLA~ay~~lG---dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG--------dyeEAie~fekALel--~Pdn 1796 (1956)
+..|..+...+ ....|+.+|+++++++|++ +.++..++.+|.... +...|.....+++.+ ++.+
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF---TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 33455554443 4789999999999999999 888888888775542 345666667776664 6778
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1797 SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1797 aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
+.++..+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 89999999999999999999999999999999 4789999999999999999999999999999999885
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.3e-08 Score=112.20 Aligned_cols=234 Identities=11% Similarity=-0.001 Sum_probs=179.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA 1687 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lG 1687 (1956)
+-..|..|+++|.|++||.||.+++..+|.++..+.+.|.+|++.+++..|...+..|+.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----CCCH
Q psy8682 1688 CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ----SIDP 1763 (1956)
Q Consensus 1688 dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n----~~~a 1763 (1956)
...+|.+.++.++++ .|+ ...+- ..+.......++.- +.+..|.. ....
T Consensus 180 ~~~EAKkD~E~vL~L----EP~---~~ELk----------------K~~a~i~Sl~E~~I----~~KsT~G~~~A~Q~~~ 232 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL----EPK---NIELK----------------KSLARINSLRERKI----ATKSTPGFTPARQGMI 232 (536)
T ss_pred hHHHHHHhHHHHHhh----Ccc---cHHHH----------------HHHHHhcchHhhhH----HhhcCCCCCccccchh
Confidence 999999999999999 887 11111 11111111111110 11111111 0000
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1764 D--VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1764 ~--a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
. ..-..|..+...|.++.++.++..-+.....+..+-.+ +..|.+..++++|+...-+++..+|....+....+.+-
T Consensus 233 Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~ 311 (536)
T KOG4648|consen 233 QILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAE 311 (536)
T ss_pred hhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhH
Confidence 0 11223666778889999999988877666555555445 77888889999999999999988888777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1842 VHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1842 ~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
.-+|...+|...++.++.+.|.+..+-.
T Consensus 312 T~~~~~~E~K~~~~T~~~~~P~~~~~~~ 339 (536)
T KOG4648|consen 312 TIAKTSKEVKPTKQTAVKVAPAVETPKE 339 (536)
T ss_pred HHHhhhhhcCcchhheeeeccccccchh
Confidence 7788899999999999999998665433
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.3e-06 Score=96.73 Aligned_cols=280 Identities=11% Similarity=0.053 Sum_probs=203.6
Q ss_pred ChhhhhhhHHHHHhch--hhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSS--VSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-----AEVWLSL 1645 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s--~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn-----aeAl~~L 1645 (1956)
.++.-.+.|++++... ..+-+. +-.+....-+++.++++.+.+.-++.+++.+-+-.+.+-... ..+...+
T Consensus 51 ~a~s~~g~y~~mL~~a~sqi~~a~--~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 51 TAHSEMGRYKEMLKFAVSQIDTAR--ELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 5677788888888762 122222 223333456889999999999999999999888877653222 3567779
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCc
Q psy8682 1646 GISLAENEQDPQAIAALSKCLSIEPKNL------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP 1719 (1956)
Q Consensus 1646 A~ay~~lGdyeEALe~yeKALeLdPdna------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~ 1719 (1956)
|.++..++.++++++.|++|++...++. .++..||.+|..+.++++|+-+..++.++ -.. |. + ..
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l----v~s---~~-l-~d 199 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL----VNS---YG-L-KD 199 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH----HHh---cC-c-Cc
Confidence 9999999999999999999999864433 46788999999999999999999999988 111 11 0 00
Q ss_pred chhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q psy8682 1720 SKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD- 1795 (1956)
Q Consensus 1720 ~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd- 1795 (1956)
.......-+.+.++..+..+|+...|.++.+++.++.-.. ...+.....+|.+|...|+.+.|..-|+.|......
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 0123345567889999999999999999999998764222 223556778899999999999999999999865322
Q ss_pred -----CHHHHHHHHHHHHHCCCh-----HHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1796 -----DSRLWNRLGASLANGNRP-----EEAVEAYHTALQLSPG------FVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1796 -----naeA~~nLG~ay~qlGry-----eEAie~yeKALeL~Pd------naeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
...++...|.++....-. -.|++.-.+++++... .-..+..++.+|..+|.-++-..++.+|-+
T Consensus 280 gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 280 GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 234555555555443333 3488888888776433 234678899999999988888888877766
Q ss_pred hcCC
Q psy8682 1860 QQAA 1863 (1956)
Q Consensus 1860 LdPd 1863 (1956)
....
T Consensus 360 ~~~e 363 (518)
T KOG1941|consen 360 CVEE 363 (518)
T ss_pred HHHH
Confidence 6544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.4e-06 Score=99.49 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHH
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN---RPEEAV 1817 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG---ryeEAi 1817 (1956)
..+..+.-++.-+..+|++ ..-|..||.+|..+|++..|...|.+|+++.|++++.+..+|.++..+. ...+|.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d---~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQNPGD---AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 3566677788889999999 9999999999999999999999999999999999999999999887654 357899
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
..+++++.++|.+..+.+.||..++..|+|.+|+..++..++..|.+..
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999999987554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-06 Score=100.95 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=139.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHH
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFR 1733 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA 1733 (1956)
++++|...|.+| |.+|...|++++|.++|.++... +..... ....+..+...+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~----------~~~~~~---~~~Aa~~~~~Aa 82 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADC----------YEKLGD---KFEAAKAYEEAA 82 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHH----------HHHTT----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHH----------HHHcCC---HHHHHHHHHHHH
Confidence 566666666554 67788999999999999999888 544331 134556667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHH
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLS-DEYDKAVDCFRSALQVRPD--D----SRLWNRL 1803 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~l-GdyeEAie~fekALel~Pd--n----aeA~~nL 1803 (1956)
.++... ++++|+.+|++++.+.-.. ...+.++..+|.+|... |++++|+++|++|+.+... . ...+..+
T Consensus 83 ~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 83 NCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 777666 9999999999999874332 12356788999999998 9999999999999987422 2 3567889
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCC------c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPG------F-VRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~Pd------n-aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
|.++..+|+|++|+..|+++....-+ . ...++..+.|++..|++..|...+++....+|....
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999875322 1 234567888999999999999999999999998554
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-06 Score=102.45 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQ------------SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD 1796 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n------------~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn 1796 (1956)
....|+.|++.|+|..|...|++++..-... .....++.+++.++.++++|.+|+..++++|.++|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3456889999999999999999988764422 1123456777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhcCC
Q psy8682 1797 SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA-VEHFLTALNQQAA 1863 (1956)
Q Consensus 1797 aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA-ie~yekALeLdPd 1863 (1956)
..+++..|.++..+|+|+.|+..|++++++.|+|..+...|..+-.+..++.+. .+.|..++..-+.
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 777777777777777777777777777777777777777777776666555443 5666666655443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.3e-07 Score=82.40 Aligned_cols=67 Identities=34% Similarity=0.574 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-QDPQAIAALSKCLSIEP 1670 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-dyeEALe~yeKALeLdP 1670 (1956)
++..|+.+|..++..|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677788888888888888888888888888888888888888888887 68888888888887776
|
... |
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-06 Score=103.97 Aligned_cols=134 Identities=17% Similarity=0.192 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD----D-----------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~Pd----n-----------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
..-..|..|++.|+|..|...|++|+..-.. + ..++.+++.|+.++++|.+|+....++|.++|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 3455688999999999999999999875331 1 246899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
|..++|..|.++..+|+|+.|+..|++|++++|+|..+...+..+..+...+.+.-...++..+.....
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999888887776666655544555655555543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-05 Score=96.86 Aligned_cols=186 Identities=13% Similarity=0.131 Sum_probs=141.6
Q ss_pred HHHHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 754 CFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRAR 833 (1956)
Q Consensus 754 lFerALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErAR 833 (1956)
-|++.++.+|.|.+.|+.|+.+-.......... ..+.....++...+|++||..++.+..+|+.|.+.-.+..+.++..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~-~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSS-KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccc-hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 478889999999999999998866322111111 3455667788999999999999999999999999988888999999
Q ss_pred HHHHHhhcccCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHH
Q psy8682 834 SIYERALDVDHRNITLWLKYTELEMR---NRQVNHARNLWDRAVTILPR------------------ANQFWYKYTYMEE 892 (1956)
Q Consensus 834 sIfERALs~~Pk~~dLWl~YadfE~k---~gnierARsLFERAL~~~Pk------------------s~~LW~kYidfE~ 892 (1956)
..+++++..+|.+..||..|+++... .-++..+|.+|.++++.... ...++..+..|+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876 34688999999999873210 1667778889999
Q ss_pred HcCCHHHHHHHHHhhc------c----Cc--hHHHHHHHHhh-c---ccccchHHHHHHHHHHH
Q psy8682 893 MLENVAGKLFVFHRDS------I----SQ--VTLWLGALTLS-L---EGLGSNLQSWVRFLARD 940 (1956)
Q Consensus 893 k~Gd~e~aR~VfERAL------~----~~--~~LWl~Yi~fE-l---e~~~~~lk~~~r~l~ra 940 (1956)
+.|-.++|-.++.-.+ | .. .+....+-+|- . +.+....+.|..+++..
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~FWeS~vpRiGE~gA~GW~~~~~~~ 229 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEFWESEVPRIGEPGAKGWRKWMEQG 229 (321)
T ss_pred HCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHhCcCCCCCCCCCcchhhhhhccc
Confidence 9999999988887765 1 11 13344444441 1 12555566777666663
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-05 Score=86.85 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=101.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
..++...+...+++.+.. .|+ .+-...+.+.+|.++...|++++|...|+.++...|+......
T Consensus 23 ~~~~~~~~~~~~~~l~~~----~~~------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD----YPS------------SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HCCCHHHHHHHHHHHHHH----CCC------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 578888888888888887 666 2233456788999999999999999999999998766534456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
+...+|.++...|++++|+..++. +.-.+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788899999999999999999976 33344456788899999999999999999999875
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-06 Score=85.35 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1776 SDEYDKAVDCFRSALQVRPD--DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853 (1956)
Q Consensus 1776 lGdyeEAie~fekALel~Pd--naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~ 1853 (1956)
+|+|+.|+..++++++..|. +...++.+|.+|++.|++++|+..+++ ++.++.+....+.+|.++.++|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888888887774 455666778888888888888888887 777777777777778888888888888888
Q ss_pred HHHH
Q psy8682 1854 FLTA 1857 (1956)
Q Consensus 1854 yekA 1857 (1956)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.8e-05 Score=86.99 Aligned_cols=253 Identities=13% Similarity=0.073 Sum_probs=169.6
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
+.+++.|..+|.. +..+...+ .+.+..+.+.+.|...|++...+.-....- .....+...++.....-++
T Consensus 18 ~fY~Gnyq~~ine-----~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 18 YFYLGNYQQCINE-----AEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHhhHHHHHHHH-----HHhhcccc--chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcch
Confidence 4567777777765 23222221 356677788888888888766555443322 1223345555555555555
Q ss_pred hHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIE--PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1655 yeEALe~yeKALeLd--PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
.+.-+.-+.+.+... ..+...+..-|.+|...|++++|++.......+ ++...-
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------------------------E~~Al~ 143 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------------------------EAAALN 143 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------------------------HHHHHH
Confidence 554444444433332 223334555567788888899988887763333 112222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS----DEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l----GdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
-.++.+..+.+-|...++++.+++.+. ++..||..+... +++.+|.-+|++.-...|..+.+.+.++.+.+
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~-----tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDA-----TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHH-----HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence 467778888888888888888876654 556666665433 56888888888888877888888888889999
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCCChh
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV-EHFLTALNQQAATHD 1866 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi-e~yekALeLdPdn~d 1866 (1956)
.+|+|++|...++.++..++++++++.++..+-...|...++. +++.+....+|.++-
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999999999888888999988888888888876665 445556666777654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-06 Score=79.76 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=44.8
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1802 nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
.+|..+...|++++|+..|+++++..|++..+++.+|.++..+|++++|+.+|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566777777777777777777777777777777777777777777777777777777777654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-06 Score=78.80 Aligned_cols=65 Identities=37% Similarity=0.587 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q psy8682 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673 (1956)
Q Consensus 1609 l~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna 1673 (1956)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999874
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-06 Score=83.46 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=68.5
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPD--NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDT 1695 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPd--naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~ 1695 (1956)
+|+++.|+.+|+++++..|. +...++.+|.+|+..|++++|+..+++ ++.++.+....+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68899999999999999885 456777789999999999999999988 778888888888889999999999999999
Q ss_pred HHHH
Q psy8682 1696 LKDK 1699 (1956)
Q Consensus 1696 leKA 1699 (1956)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-05 Score=100.39 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAIS 1680 (1956)
Q Consensus 1604 daeall~LG~aylk~Gd---ydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA 1680 (1956)
++-.++..|..++..++ ...|+.+|+++++++|+++.++..++.++.....+. |..
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-------------~~~-------- 396 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-------------PLD-------- 396 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-------------Ccc--------
Confidence 44556667777766554 667777888888888887777777766664331111 000
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS 1760 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~ 1760 (1956)
..+...+.....+++.+ ... +..+.++..+|..+...|++++|...+++|+.++| +
T Consensus 397 -----~~~l~~a~~~~~~a~al----~~~-------------~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s- 452 (517)
T PRK10153 397 -----EKQLAALSTELDNIVAL----PEL-------------NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-S- 452 (517)
T ss_pred -----HHHHHHHHHHHHHhhhc----ccC-------------cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-
Confidence 01112233333333332 001 01122333344444455555555555555555555 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
..+|..+|.++...|++++|++.|++|+.++|.++
T Consensus 453 --~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 453 --WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 44555556555556666666666666665555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.8e-06 Score=96.53 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=117.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHH
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG---ANTQAVEH 1853 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG---dyEEAie~ 1853 (1956)
.+.++.+.-++..+..+|++.+-|..||.+|+.+|+++.|...|.+|+++.|++++.+..+|.++.... ...+|...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 345667777888899999999999999999999999999999999999999999999999999987664 35789999
Q ss_pred HHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCCcccccccCcch
Q psy8682 1854 FLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEW 1910 (1956)
Q Consensus 1854 yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~~~al~Laq~~~ 1910 (1956)
+++++.++|++..+.+.+|..+.+.|++.+++ .++++.+...+-..++..+.+...
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~~~~rr~~ie~~i 271 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPADDPRRSLIERSI 271 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCCCCchHHHHHHHH
Confidence 99999999999999999999999999999988 778888888887767666655433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=97.96 Aligned_cols=121 Identities=24% Similarity=0.256 Sum_probs=110.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
+...+...++++.|+..+++..+.+|+ +...++.++...++-.+|++.+.+++...|.+..++...+..+...+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 345556678999999999999988876 36678999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekAL 1858 (1956)
+++.|+...++++...|++...|+.|+.+|..+|+++.|+..++.+-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999997776443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-05 Score=93.65 Aligned_cols=102 Identities=15% Similarity=0.242 Sum_probs=58.5
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---cHHHHHH
Q psy8682 1764 DVQNGLGVLF-NLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---FVRARYN 1836 (1956)
Q Consensus 1764 ~a~~~LG~ly-~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd---naeA~~~ 1836 (1956)
...+..|..+ ...|+|++|+..|++.++..|++ +.+++.+|.+|...|++++|+..|++++...|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444433 34455666666666666655554 345566666666666666666666666655544 3455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1837 LGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1837 LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+|.++..+|++++|+..|+++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66666666666666666666666666544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-05 Score=92.02 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=96.4
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH
Q psy8682 1726 ANHTLTFRSPL-SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD---DSRLWN 1801 (1956)
Q Consensus 1726 a~a~lnLA~ay-~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd---naeA~~ 1801 (1956)
....+..|..+ ...|++++|+..|+..++.+|++...+.+++.+|.+|+..|++++|+..|+++++..|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34556666665 66799999999999999999998556789999999999999999999999999998887 468999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH
Q psy8682 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833 (1956)
Q Consensus 1802 nLG~ay~qlGryeEAie~yeKALeL~PdnaeA 1833 (1956)
.+|.++..+|++++|+..|+++++..|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999997654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-05 Score=97.74 Aligned_cols=124 Identities=9% Similarity=0.019 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHH---HhCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1741 IHQQVLSLYLNAA---RQCPSQSIDPDVQNGLGVLFNLS---------DEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1741 dyeEAle~LekAL---el~P~n~~~a~a~~~LG~ly~~l---------GdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
..+.|+.+|.+++ .++|.. +.++..++.++... ....+|.+..++|++++|.++.++..+|.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~---a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLK---TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCccc---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567889999999 889988 89999999887654 23568889999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
..++++.|...|++|+.++|+.+.+++..|.++...|+.++|.+.++++++++|.-..+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999985543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.5e-05 Score=93.41 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCC
Q psy8682 1607 NAFALGQEKLRQG---DLPSAILYLEAAA---KQEPDNAEVWLSLGISLAEN---------EQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1607 all~LG~aylk~G---dydEAIe~fekAL---eldPdnaeAl~~LA~ay~~l---------GdyeEALe~yeKALeLdPd 1671 (1956)
.++.+|...+..+ ..+.|+.+|.+++ .++|+.+.++..++.++... ....+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 5577888877766 5678999999999 99999999999999988754 2345788888889999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
++.++..+|.++...++++.|...|++++.+ +|+ .+.+++..|.+....|+.++|.+.+++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L----~Pn---------------~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIH----STD---------------IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc----CCc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999888888888888888888888 666 455667777888888888888888888
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fek 1788 (1956)
+++++|.. ..+ ....+-.-.+-....+.|+..|-+
T Consensus 398 alrLsP~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQLEPRR-RKA-VVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HhccCchh-hHH-HHHHHHHHHHcCCchhhhHHHHhh
Confidence 88888865 111 112222212234455666666544
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.9e-06 Score=95.86 Aligned_cols=101 Identities=19% Similarity=0.351 Sum_probs=89.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCC
Q psy8682 801 AFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMR-NRQVNHARNLWDRAVTILPR 879 (1956)
Q Consensus 801 lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k-~gnierARsLFERAL~~~Pk 879 (1956)
+|-|+...++..+++|..|+.+..+.|.+.+...||-.+|+.+|..++||+.-+++|.. .+|++.+|++|.++++.+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 35566677788899999999999999999999999999999999999999998999864 79999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy8682 880 ANQFWYKYTYMEEMLENVAGKLFVFHR 906 (1956)
Q Consensus 880 s~~LW~kYidfE~k~Gd~e~aR~VfER 906 (1956)
++.+|..|..||..+ .-+++.|
T Consensus 175 ~p~iw~eyfr~El~y-----iTKL~~R 196 (435)
T COG5191 175 SPRIWIEYFRMELMY-----ITKLINR 196 (435)
T ss_pred CchHHHHHHHHHHHH-----HHHHHhh
Confidence 999999999999765 3345555
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00018 Score=83.69 Aligned_cols=257 Identities=11% Similarity=0.049 Sum_probs=183.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1612 G~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
.+-++-.|+|..++..-++.-... .......++.+.|..+|++..-+.-....- .....+...++.....-++.+.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 345556788888888777765443 677788889999999998866554433221 1222344455554444455444
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ 1771 (1956)
-+.-+.+.+.. . . ..........-|.+|...|++++|++...... + .++...-..
T Consensus 91 ~~~~l~E~~a~----~-~------------~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~---lE~~Al~Vq 145 (299)
T KOG3081|consen 91 ILASLYELVAD----S-T------------DGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-----N---LEAAALNVQ 145 (299)
T ss_pred HHHHHHHHHHh----h-c------------cchhHHHHHHhhHHhhcCCChHHHHHHHhccc-----h---HHHHHHHHH
Confidence 44444443332 0 0 01122334455789999999999999887732 2 445555567
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q psy8682 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847 (1956)
Q Consensus 1772 ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdy 1847 (1956)
++.++.+.+-|.+.++++..++.+ .++..||.++.+ .+++.+|.-+|+..-+..|..+.....++.|+..+|++
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH
Confidence 888999999999999999887655 344445555443 35689999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1848 TQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1848 EEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
++|...++.||..++++++++.++-.+...+|...+..-+++.......+.+
T Consensus 224 eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999988999999777766666655555544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.5e-05 Score=95.02 Aligned_cols=151 Identities=17% Similarity=0.268 Sum_probs=117.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHhhcccCCCHHHHHHHHHHHHHcCChHHHH
Q psy8682 800 KAFEDNIRKNRMVISNWIKYAQWEESQKQ------------VDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHAR 867 (1956)
Q Consensus 800 ~lyEraL~~~~~s~~lWlkYAqfE~~~Gd------------~ErARsIfERALs~~Pk~~dLWl~YadfE~k~gnierAR 867 (1956)
.-|++.++..|..++.|+.|+++....-. .|+...||||||+.+|.+..||..|++.-.+..+.+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35888898889999999999999765422 467778999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHhhc-------cCc--------------hHHHHHHHHhhc
Q psy8682 868 NLWDRAVTILPRANQFWYKYTYMEEML---ENVAGKLFVFHRDS-------ISQ--------------VTLWLGALTLSL 923 (1956)
Q Consensus 868 sLFERAL~~~Pks~~LW~kYidfE~k~---Gd~e~aR~VfERAL-------~~~--------------~~LWl~Yi~fEl 923 (1956)
..|++++..+|....+|.+|++|.... -.+..++.+|.++| ... ..+.+.+..|..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999873 36899999999998 111 124666666655
Q ss_pred ccc--cchHHHHHHHHHHHhccccCccceeee
Q psy8682 924 EGL--GSNLQSWVRFLARDVGECCCGQVVSTV 953 (1956)
Q Consensus 924 e~~--~~~lk~~~r~l~ralkec~~g~~~~~~ 953 (1956)
.-+ ...+-.|.-.|+. +|++...+...
T Consensus 166 ~aG~~E~Ava~~Qa~lE~---n~~~P~~~~~~ 194 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEF---NFFRPESLSSS 194 (321)
T ss_pred HCCchHHHHHHHHHHHHH---HcCCccccccc
Confidence 532 2333455666666 45444444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.9e-06 Score=89.20 Aligned_cols=97 Identities=16% Similarity=0.055 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
.+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..++++++...+..|.|+.
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 45566667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q psy8682 1843 HLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1843 klGdyEEAie~yekALe 1859 (1956)
.+|+.+.|+.+|+.++.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 77777777777777777
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3e-05 Score=94.10 Aligned_cols=155 Identities=19% Similarity=0.313 Sum_probs=123.6
Q ss_pred HHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 756 RSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSI 835 (1956)
Q Consensus 756 erALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsI 835 (1956)
..-++-+|++...|-.+++++.++ +-.+..|..||++..-+|.....|..|+.-|...++++.+..+
T Consensus 32 RerIkdNPtnI~S~fqLiq~~~tq-------------~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~l 98 (660)
T COG5107 32 RERIKDNPTNILSYFQLIQYLETQ-------------ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESL 98 (660)
T ss_pred HHHhhcCchhHHHHHHHHHHHhhh-------------hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHH
Confidence 344678999999999999888732 2244667899999988888889999999999999999999999
Q ss_pred HHHhhcccCCCHHHHHHHHHHHHHcCChH--HHHH----HHHHHHH---hCCCCHHHHHHHHHHHHH---------cCCH
Q psy8682 836 YERALDVDHRNITLWLKYTELEMRNRQVN--HARN----LWDRAVT---ILPRANQFWYKYTYMEEM---------LENV 897 (1956)
Q Consensus 836 fERALs~~Pk~~dLWl~YadfE~k~gnie--rARs----LFERAL~---~~Pks~~LW~kYidfE~k---------~Gd~ 897 (1956)
|-|+|... ...+||+.|+++-.+.++.- .+|. .||-.+. ..|.+..+|..|.+|.+. +..+
T Consensus 99 f~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqri 177 (660)
T COG5107 99 FGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRI 177 (660)
T ss_pred HHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHH
Confidence 99999743 34899999999988765321 2333 4666555 468889999999997543 3357
Q ss_pred HHHHHHHHhhc----cCchHHHHHHHHhhcc
Q psy8682 898 AGKLFVFHRDS----ISQVTLWLGALTLSLE 924 (1956)
Q Consensus 898 e~aR~VfERAL----~~~~~LWl~Yi~fEle 924 (1956)
+.+|..|.||| .+-..+|.+|-.||.+
T Consensus 178 d~iR~~Y~ral~tP~~nleklW~dy~~fE~e 208 (660)
T COG5107 178 DKIRNGYMRALQTPMGNLEKLWKDYENFELE 208 (660)
T ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHHH
Confidence 89999999999 4556899999888887
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.8e-05 Score=80.85 Aligned_cols=98 Identities=24% Similarity=0.211 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD---DSRLWNRLG 1804 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd---naeA~~nLG 1804 (1956)
+.+.+|.++...|+.++|+.+|++++...........++..+|..+..+|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45677788888888888888888887765443223557777888888888888888888888877777 666777777
Q ss_pred HHHHHCCChHHHHHHHHHHHh
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALe 1825 (1956)
.++...|++++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888877766664
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.8e-05 Score=85.35 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
..+..+..|..++..|++++|..+|+-+...+|.+.+.+..||.++..+++|++|+..|..+..++++++...+..|.||
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q psy8682 1684 TNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALel 1702 (1956)
..+|+.+.|..+|..++..
T Consensus 116 l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 116 LLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHhCCHHHHHHHHHHHHhC
Confidence 9999999999999999886
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0004 Score=81.00 Aligned_cols=179 Identities=18% Similarity=0.257 Sum_probs=128.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE---ALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnae---Al~ 1677 (1956)
.+..++..|...++.|++++|+..|+.+...+|.. ..+...++.++++.+++++|+...++-+.+.|.+++ +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 56799999999999999999999999999998865 568999999999999999999999999999987664 566
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc--h-hhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1678 AISICFTNE--------ACLHDALDTLKDKIRPGQESNPRPSAYKADALPS--K-LTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1678 ~LA~aY~~l--------GdydEALe~leKALelg~e~dPd~eay~~Ll~~~--K-l~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
..|.++... .-..+|...++..+.. -|+.. |..-.... . ...++.--..+|..|.+.|.+-.|+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r----yPnS~-Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR----YPNSR-YAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH----CCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 777776543 2244778888888888 77711 11111000 0 0123333445677777777777777
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fe 1787 (1956)
..++.+++..|+......++..+..+|..+|-.++|...-.
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 77777777766654445566666677777777776665543
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=94.75 Aligned_cols=208 Identities=9% Similarity=0.015 Sum_probs=154.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcch
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK 1721 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~K 1721 (1956)
+-..|.-|+.+|+|++|+++|.+++..+|.++..+.+.|.+|+++..|..|...+..++.+ +.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d~------------- 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----DK------------- 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----hH-------------
Confidence 4567899999999999999999999999999999999999999999999999999999998 32
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-
Q psy8682 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLW- 1800 (1956)
Q Consensus 1722 l~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~- 1800 (1956)
....+|...+.+-..+|...+|.+-++.++++.|++ ....-.++.+ ....++. -+.+..|....+.
T Consensus 163 --~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~---~ELkK~~a~i----~Sl~E~~----I~~KsT~G~~~A~Q 229 (536)
T KOG4648|consen 163 --LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN---IELKKSLARI----NSLRERK----IATKSTPGFTPARQ 229 (536)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc---HHHHHHHHHh----cchHhhh----HHhhcCCCCCcccc
Confidence 234566778888899999999999999999999998 4433333322 2222221 1122222221111
Q ss_pred --------HHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1801 --------NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1801 --------~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
-.-|..+...|.++.|+.+|-+-+.....+.....+ +..|.+.-+++.|+...-+++.++|....+....|
T Consensus 230 ~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~ 308 (536)
T KOG4648|consen 230 GMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPP 308 (536)
T ss_pred chhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCc
Confidence 224666778888999999888877665555544444 77788888999999999999988888666666665
Q ss_pred cchhhhcc
Q psy8682 1873 LEPRAVKE 1880 (1956)
Q Consensus 1873 ~l~~~lg~ 1880 (1956)
....-.|.
T Consensus 309 ~A~T~~~~ 316 (536)
T KOG4648|consen 309 KAETIAKT 316 (536)
T ss_pred hhHHHHhh
Confidence 54333333
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00032 Score=89.65 Aligned_cols=212 Identities=13% Similarity=0.084 Sum_probs=136.4
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
.+.-.++....|-.. +|++....|+. +.-...|......|..++|..+|++.-. +-.+-..|...
T Consensus 775 VAkVClGhm~~aRga----RAlR~a~q~~~---e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~ 839 (1416)
T KOG3617|consen 775 VAKVCLGHMKNARGA----RALRRAQQNGE---EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQ 839 (1416)
T ss_pred HHHHhhhhhhhhhhH----HHHHHHHhCCc---chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhc
Confidence 455667777777666 45554555553 2334456677788999999999998743 44567788899
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCCCC-chhhhhhcCcchhhhh
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQ------ESNPR-PSAYKADALPSKLTRL 1725 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~------e~dPd-~eay~~Ll~~~Kl~e~ 1725 (1956)
|.+++|.+..+.--.+. -...|++.|.-+...++.+.|+++|+++-.... ..+|. .+.|..- ...
T Consensus 840 g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~------~~d 911 (1416)
T KOG3617|consen 840 GMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR------KRD 911 (1416)
T ss_pred ccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh------ccc
Confidence 99999988765432222 234788999999999999999999998632200 00222 1111111 123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
...|.-.|..+...|+.+.|+.+|..|-. |+.+.++.+-+|+.++|....++ ..+-.+.+.||.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR 975 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLAR 975 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHH
Confidence 34455678888899999999999988743 34444555556666666554443 444555666666
Q ss_pred HHHHCCChHHHHHHHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKA 1823 (1956)
.|...|++.+|+..|.+|
T Consensus 976 ~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 666666666666666554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=91.30 Aligned_cols=122 Identities=13% Similarity=0.208 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
.|...+...++++.|+..+++..+. +|. ....++.++...++..+|++.+.++++..|
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~----~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p 231 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER----DPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENP 231 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc----CCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 3455566678999999999999888 666 234578889899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
.+ ...+...+..+...++++.|+.+.++++.+.|.+...|..|+.+|..+|++++|+..++.+-
T Consensus 232 ~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 232 QD---SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 98 99999999999999999999999999999999999999999999999999999998777543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0044 Score=75.13 Aligned_cols=271 Identities=12% Similarity=0.020 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdn-aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
+-+.+..+....-.|+++.|..-|+.++. +|.. .-.+..|-.-....|..+.|..+-+++....|.-..++...-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 44777788888999999999999998874 2321 112333333445789999999999999999999998888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCCCC
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL-SSREIHQQVLSLYLNAARQCPSQSID 1762 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay-~~lGdyeEAle~LekALel~P~n~~~ 1762 (1956)
+..|+++.|+++.+..... ....++ ..+...+-+.-+... .-..+...|...-.+++++.|+.
T Consensus 199 ~~~gdWd~AlkLvd~~~~~-~vie~~------------~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdl--- 262 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAA-KVIEKD------------VAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDL--- 262 (531)
T ss_pred HhcCChHHHHHHHHHHHHH-Hhhchh------------hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc---
Confidence 9999999999999877654 001111 011111112122222 23456888999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH---hhCCCcHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL---QLSPGFVRARYNLGI 1839 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL---eL~PdnaeA~~~LA~ 1839 (1956)
..+-..-+..++..|+..++-..++.+.+..|.- .++.+|....--+.++.-++++- .+.|++.+.....+.
T Consensus 263 vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-----~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~ 337 (531)
T COG3898 263 VPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-----DIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAE 337 (531)
T ss_pred chHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-----HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 6677778899999999999999999999998863 23444554444445555555554 468999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1840 TCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1840 ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
.-+..|++..|..--+.+....|. ..++..++.+....--.+.-+...+.++...-.+
T Consensus 338 aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 999999999999999999999997 4467777777665523345566778887766554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00094 Score=78.00 Aligned_cols=189 Identities=13% Similarity=0.095 Sum_probs=139.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.+..++.-|...++.|++++|+..|+++...+|..+ .+...++.++++.+++++|+...++.+.+ .|.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l----yP~----- 103 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL----YPT----- 103 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CCC-----
Confidence 467899999999999999999999999999987654 67889999999999999999999999999 777
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSS--------REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~--------lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~f 1786 (1956)
.++...+++..|.++.. ..-..+|+..++..+...|++...+++...+..+--.+
T Consensus 104 -------~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L---------- 166 (254)
T COG4105 104 -------HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL---------- 166 (254)
T ss_pred -------CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH----------
Confidence 34455566666666552 23345677788888888888744444433332221111
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-C
Q psy8682 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF---VRARYNLGITCVHLGANTQAVEHFLTALNQQ-A 1862 (1956)
Q Consensus 1787 ekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn---aeA~~~LA~ay~klGdyEEAie~yekALeLd-P 1862 (1956)
+.--..+|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...- +.|..+ |
T Consensus 167 ----------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p 235 (254)
T COG4105 167 ----------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYP 235 (254)
T ss_pred ----------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCC
Confidence 1112346788888889999999998888876653 457888888899999888886554 445444 4
Q ss_pred C
Q psy8682 1863 A 1863 (1956)
Q Consensus 1863 d 1863 (1956)
+
T Consensus 236 ~ 236 (254)
T COG4105 236 D 236 (254)
T ss_pred C
Confidence 4
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.4e-05 Score=82.61 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=55.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
|+-++..|+|++|..-|..|+.+.|.. ......|.+.|.++++++.++.|+..+.++++++|.+..++...|.+|.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 455556666666666666666665544 112234455555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHhhCCCcHHH
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRA 1833 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA 1833 (1956)
.+|++|+..|++.++.+|....+
T Consensus 182 ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHH
Confidence 55555555555555555554433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=76.23 Aligned_cols=96 Identities=25% Similarity=0.272 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---cHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---FVRARYNL 1837 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd---naeA~~~L 1837 (1956)
.+.+.+|.++-..|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999976544 578999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1838 GITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALe 1859 (1956)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00032 Score=79.34 Aligned_cols=197 Identities=15% Similarity=0.123 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1639 AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1639 aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
+..++..|..|-..|-..-|.-.|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|+..+++ +|. |.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----Dp~---y~---- 133 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPT---YN---- 133 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----CCc---ch----
Confidence 4567778889999999999999999999999999999999999999999999999999999999 887 32
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
.+..+.|..++.-|++.-|.+-+.+-.+.+|++ .-...|..+- ...-+..+|...+.+-.+...+...
T Consensus 134 --------Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D-PfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~W 201 (297)
T COG4785 134 --------YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND-PFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQW 201 (297)
T ss_pred --------HHHhccceeeeecCchHhhHHHHHHHHhcCCCC-hHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhh
Confidence 345677888889999999999999999999988 1112232222 2334667777655443332222222
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGF-------VRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-------aeA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
.|+..+ ..+|+..+ ...++++.+...++ .++++.||+.+...|+.++|...|+-|+.-+-
T Consensus 202 G~~iV~---~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 202 GWNIVE---FYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hHHHHH---HHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 232222 22333321 22344444433332 46899999999999999999999999887643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=3e-05 Score=71.98 Aligned_cols=67 Identities=33% Similarity=0.379 Sum_probs=60.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI 1681 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~ 1681 (1956)
++..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999998877776665
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00019 Score=84.24 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGA 1805 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ 1805 (1956)
.++.|.-++..|+|..|...|..-++..|++...+.+++.||.+++.+|+|++|...|..+.+-.|++ +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 77888889999999999999999999999887788899999999999999999999999999887664 688999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
+...+|+.++|...|+++++..|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999888765543
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=6e-05 Score=84.13 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS-----RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGIT 1840 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~Pdna-----eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~a 1840 (1956)
+-.-|.-++..|+|++|..-|..||.+.|..+ ..|.+.|.+++++++++.|+..+.+||+++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44457778899999999999999999998753 5788999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1841 CVHLGANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1841 y~klGdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
|.++.+|++|++.|++.+.++|....+.-...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999999999999766554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.2e-05 Score=71.02 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=34.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1775 LSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1775 ~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
..|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4455555555555555555555555555555555555555555555555555555544444333
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.6e-05 Score=72.49 Aligned_cols=63 Identities=24% Similarity=0.236 Sum_probs=34.3
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
.+|...+++++|+.++++++.++|+++..+..+|.++..+|++.+|+..|+++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 345555555555555555555555555555555555555555555555555555555554443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.6e-05 Score=70.66 Aligned_cols=69 Identities=32% Similarity=0.482 Sum_probs=52.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1770 GVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1770 G~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
..+|...+++++|++++++++.++|+++.++..+|.++..+|++.+|+..|+++++..|++..+...++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456777788888888888888888888888888888888888888888888888887777766554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.5e-05 Score=92.76 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL---WNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA---~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+.+++++|.+|..+|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.+|++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555532 555555555555555555555555554
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0075 Score=79.30 Aligned_cols=117 Identities=12% Similarity=0.039 Sum_probs=96.5
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
++|.+|++. ..+.++..|+.+. +....|..+.+.|++++|..+++..-...+++-..+..+-.+|..+|++++|
T Consensus 23 ~qfkkal~~--~~kllkk~Pn~~~----a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 23 SQFKKALAK--LGKLLKKHPNALY----AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHHHHHHH--HHHHHHHCCCcHH----HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 457777776 5666665555554 8888999999999999999988887777788888999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
..+|++++..+|. ...++.+-.+|.+.+.|.+-.+.--+..+.
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 788888888898888887655555444444
|
|
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00026 Score=91.60 Aligned_cols=233 Identities=16% Similarity=0.128 Sum_probs=163.4
Q ss_pred ccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCC----CCCChHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy8682 684 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS----QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 759 (1956)
Q Consensus 684 ~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~----~~~d~dV~~~La~Ly~~sgeyEkArelFerAL 759 (1956)
|.-||-.|++-.-.+++..++.. ..+....+|.+|+..-.. +.-.-+++.-+-+.|-.+-..++-...|.+.+
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~---d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el 258 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSE---DYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVREL 258 (881)
T ss_pred cchHHHHHHHHHHhccccccccc---cchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34589999997777777644433 566888899999886553 12233445555555656666677888888887
Q ss_pred hhCCCC--HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 760 QVRPDF--TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYE 837 (1956)
Q Consensus 760 kkfP~d--~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfE 837 (1956)
+. |-| ..-|-.+..+-.+. +.....+.+.+...+...+..|++.+...+.....|+.|++||+..|+.-+...++|
T Consensus 259 ~~-~~D~~~~~~~~~~~sk~h~-~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~e 336 (881)
T KOG0128|consen 259 KQ-PLDEDTRGWDLSEQSKAHV-YDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEE 336 (881)
T ss_pred hc-cchhhhhHHHHHHHHhcch-HHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 65 333 23332222220000 001233444555555566777888888777777889999999999999999999999
Q ss_pred HhhcccCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHhhccCchHHH
Q psy8682 838 RALDVDHRNITLWLKYTEL-EMRNRQVNHARNLWDRAVTILPRANQFWYKYT-YMEEMLENVAGKLFVFHRDSISQVTLW 915 (1956)
Q Consensus 838 RALs~~Pk~~dLWl~Yadf-E~k~gnierARsLFERAL~~~Pks~~LW~kYi-dfE~k~Gd~e~aR~VfERAL~~~~~LW 915 (1956)
|++...+...++|+.|.-+ -+.++-.+++-.++-|+++.||...+||.+|+ .||+...+.+-+-..+++++.....+.
T Consensus 337 R~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~ 416 (881)
T KOG0128|consen 337 RAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELH 416 (881)
T ss_pred HHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999988665 23455567788889999999999999999887 455555567777788888886666666
Q ss_pred HHHHHh
Q psy8682 916 LGALTL 921 (1956)
Q Consensus 916 l~Yi~f 921 (1956)
..|+.+
T Consensus 417 ~~~~~~ 422 (881)
T KOG0128|consen 417 NDYLAY 422 (881)
T ss_pred HHHHHH
Confidence 666554
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.011 Score=68.94 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR------PDDSR 1798 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~------Pdnae 1798 (1956)
.....+.++.++...|.|.-....+.+.++.+|.. ++.....+|.+.++.|+.+.|..+|+.+-+.. .....
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~--~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ--EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc--cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 34456778899999999999999999999988543 48889999999999999999999999655432 23445
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+..+.+.++.-.+++.+|...|.+.+..+|.++.+.++.|.|+..+|+..+|++.++.++...|...
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 6777888899999999999999999999999999999999999999999999999999999999843
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0016 Score=72.46 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=100.9
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS-IEPKNLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALe-LdPdnaeAl~~LA~aY~~lGdydEAL 1693 (1956)
..+.=+.+.+..-..+.+...|.. .-.+.||..+...|++.+|...|++++. +..+++..+..++++.+..+++..|.
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 333334455555555555555543 3466778888888888888888887775 34566777777888888888888888
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF 1773 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly 1773 (1956)
..+++..+. +|. . ..++..+.+|..+..+|++.+|...|+.++...|+ +.+....+..+
T Consensus 145 ~tLe~l~e~----~pa---~----------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----~~ar~~Y~e~L 203 (251)
T COG4700 145 QTLEDLMEY----NPA---F----------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----PQARIYYAEML 203 (251)
T ss_pred HHHHHHhhc----CCc---c----------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----HHHHHHHHHHH
Confidence 888887777 555 1 12234455677777777777777777777777766 45555666677
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy8682 1774 NLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1774 ~~lGdyeEAie~fekAL 1790 (1956)
..+|+.++|...+....
T Consensus 204 a~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 204 AKQGRLREANAQYVAVV 220 (251)
T ss_pred HHhcchhHHHHHHHHHH
Confidence 77776666665554443
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0045 Score=81.31 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=165.7
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALD 1694 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe 1694 (1956)
....+++.+|+....+.++.+|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678999999999999999999999999999999999999999988888777788888899999999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy8682 1695 TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFN 1774 (1956)
Q Consensus 1695 ~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~ 1774 (1956)
+|++++.. +|+ +.. .+.+-.+|.+.+.|.+-.+.--+..+..|++ ....|..+..++.
T Consensus 99 ~Ye~~~~~----~P~---eel-------------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~--~yyfWsV~Slilq 156 (932)
T KOG2053|consen 99 LYERANQK----YPS---EEL-------------LYHLFMAYVREKSYKKQQKAALQLYKNFPKR--AYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHhh----CCc---HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--cchHHHHHHHHHH
Confidence 99999999 777 222 2334467777777777666666666677876 2223444444443
Q ss_pred HcCCH---------HHHHHHHHHHHHhC-CCCHHH-HHHHHHHHHHCCChHHHHHHHHHHH-hh-CCCcHHHHHHHHHHH
Q psy8682 1775 LSDEY---------DKAVDCFRSALQVR-PDDSRL-WNRLGASLANGNRPEEAVEAYHTAL-QL-SPGFVRARYNLGITC 1841 (1956)
Q Consensus 1775 ~lGdy---------eEAie~fekALel~-PdnaeA-~~nLG~ay~qlGryeEAie~yeKAL-eL-~PdnaeA~~~LA~ay 1841 (1956)
..... .-|...+++.++.. +-...+ ....-.++..+|++++|...+..-+ +. .+.+...-......+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 33222 23555666666665 222221 1223356678899999999994433 33 333444444556677
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1842 VHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1842 ~klGdyEEAie~yekALeLdPdn 1864 (1956)
..++++.+-.+...+++...+++
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHhcChHHHHHHHHHHHHhCCcc
Confidence 77888888888888888888886
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0013 Score=84.30 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH--------HHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEA--------AAKQEPDNA-EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fek--------ALeldPdna-eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~ 1677 (1956)
.|-++|....+..+.+-|.-++-. |+.....+. +.-...|.+...+|..++|+.+|+++-..+
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D-------- 830 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD-------- 830 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------
Confidence 788888888888777777666532 222211111 333456677788999999999999986543
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA----- 1752 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA----- 1752 (1956)
.|-.+|...|.+++|.+..+.--++ .+-..|++.|.-+...++.+.|+++|+++
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRi---------------------HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~haf 889 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRI---------------------HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAF 889 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccce---------------------ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHH
Confidence 4556788899999998876543222 23456888899999999999999999886
Q ss_pred -----HHhCCCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q psy8682 1753 -----ARQCPSQ-------SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY 1820 (1956)
Q Consensus 1753 -----Lel~P~n-------~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~y 1820 (1956)
+.-+|.. ..+...|..-|..+...|+.+.|+.+|..|- -|+.+-.+..-+|+.++|...-
T Consensus 890 ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 890 EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHH
Confidence 2333332 1224556666777788888888888887753 3667777788888888887655
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1821 HTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1821 eKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
++ ..+..+-|.||..|...|+..+|+..|.+|..
T Consensus 962 ~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 962 EE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred Hh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 54 46677899999999999999999999887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00083 Score=74.70 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--cHHHHHHHHHHHH
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQ-VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG--FVRARYNLGITCV 1842 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALe-l~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd--naeA~~~LA~ay~ 1842 (1956)
.+.||..+...|++.+|...|++++. +..+++..+..++.+.+..+++.+|...+++..+.+|. .+.....+|.+|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 44455555555555555555555543 33444455555555555555555555555555554443 2334444555555
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcc
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKE 1880 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~ 1880 (1956)
..|++.+|...|+.++...|+ +.+....+..+..+|.
T Consensus 172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 555555555555555555544 2233333444444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00072 Score=73.07 Aligned_cols=87 Identities=9% Similarity=0.150 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS---RLWNR 1802 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna---eA~~n 1802 (1956)
+..++.-|...+..|+|++|++.|+......|.......+...+|.+|+..+++++|+..+++-++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 345666777777777788887777777777776655667777777777777777777777777777777654 45666
Q ss_pred HHHHHHHCCC
Q psy8682 1803 LGASLANGNR 1812 (1956)
Q Consensus 1803 LG~ay~qlGr 1812 (1956)
.|.+++.+..
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 6766666544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00089 Score=78.75 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=101.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1676 LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1676 l~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
.++.|.-++..|+|..|...|...++. .|+ ....+.+++.||.+++.+|++++|...|..+.+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~----YP~------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK----YPN------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 678888899999999999999999999 776 3456788999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
.|++...+++++.+|.+...+|+.++|...|+++++..|+...+....
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 998877789999999999999999999999999999999987765443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00036 Score=86.88 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=58.3
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP---DVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1722 l~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a---~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
.|..+.+++++|.+|...|+|++|+..|+++++++|++ . .+|+++|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~---aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP---DEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788888888998888999999999999999888887 5 35888899998889999999999888887
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00034 Score=74.36 Aligned_cols=107 Identities=20% Similarity=0.439 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHhhcc---------cCCCHHHHHHHHHHHHH
Q psy8682 796 HRKRKAFEDNIRKNR---MVISNWIKYAQWEESQ----KQVDRARSIYERALDV---------DHRNITLWLKYTELEMR 859 (1956)
Q Consensus 796 ~RAR~lyEraL~~~~---~s~~lWlkYAqfE~~~----Gd~ErARsIfERALs~---------~Pk~~dLWl~YadfE~k 859 (1956)
++.|+.||..|.... .-..+|.+|++|..+. +....-+.++||+++. +++...||+.|+++..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 356788999988764 3468999999997653 5667788999999983 3344789999999743
Q ss_pred cCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 860 NRQVNHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 860 ~gnierARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
.++.+|+..... .-+.+.+|..|+.+.+..|+.++|..||.++|
T Consensus 81 -----~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 889999998773 34559999999999999999999999999875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0031 Score=72.44 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=65.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCc
Q psy8682 1646 GISLAENEQDPQAIAALSKCLSIE------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP 1719 (1956)
Q Consensus 1646 A~ay~~lGdyeEALe~yeKALeLd------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~ 1719 (1956)
|..|...+++..|=..|.++-+.. .+-...|...+.+|.. .+..+|..++++++++ |.....
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieI----------yt~~Gr- 108 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEI----------YTDMGR- 108 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHH----------HHhhhH-
Confidence 555555556666666665554432 1122344444554433 3666666666666666 555551
Q ss_pred chhhhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1720 SKLTRLANHTLTFRSPLSSR-EIHQQVLSLYLNAARQCPSQS---IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1720 ~Kl~e~a~a~lnLA~ay~~l-GdyeEAle~LekALel~P~n~---~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
....+.-+..+|.+|... .++++|+.+|+++-+...... .....+...+.....+++|.+|+..|++....
T Consensus 109 --f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 109 --FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred --HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444445555555543 556666666666555544330 01112223333334445555555555554443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0001 Score=70.55 Aligned_cols=63 Identities=27% Similarity=0.349 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhh---CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQL---SP----GFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL---~P----dnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
.++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555666666666666666666666543 11 12345666777777777777777777776665
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0019 Score=69.98 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
.+..++.-|......|+|++|++.|+.+... .|- .+-...+.+.++.+|+..+++++|+..+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r----yP~------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR----YPF------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCC------------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3456888899999999999999999999888 565 233456778899999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCC
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNLSDE---------------YDKAVDCFRSALQVRPDD 1796 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~lGd---------------yeEAie~fekALel~Pdn 1796 (1956)
-++++|.++....+++..|.+++.+.. ..+|...|++.+...|++
T Consensus 73 FirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 73 FIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 999999997777899999999887765 445555555555555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.005 Score=77.12 Aligned_cols=227 Identities=13% Similarity=0.125 Sum_probs=139.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcC
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF--TNEA 1687 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY--~~lG 1687 (1956)
.+-....+..+...-++.-++|++++|+.+.+|..||.-. ..-..+|.++|+++++.... .++... ...|
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~------~lg~s~~~~~~g 244 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEA------SLGKSQFLQHHG 244 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHH------hhchhhhhhccc
Confidence 3444455677888888888999999988888888776532 23457788888887775421 111111 1111
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHH
Q psy8682 1688 CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQN 1767 (1956)
Q Consensus 1688 dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~ 1767 (1956)
..-++ .... + ..-...+...+|.+..++|+.++|++.++..++..|.. ....++.
T Consensus 245 ~~~e~------~~~R----d--------------t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-~~l~Ire 299 (539)
T PF04184_consen 245 HFWEA------WHRR----D--------------TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-DNLNIRE 299 (539)
T ss_pred chhhh------hhcc----c--------------cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-chhhHHH
Confidence 11010 0000 0 01123344668999999999999999999999888763 3466889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-CCC---------------hHHHHHHHHHHHhhCCCc
Q psy8682 1768 GLGVLFNLSDEYDKAVDCFRSALQV-RPDDSRLWNRLGASLAN-GNR---------------PEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1768 ~LG~ly~~lGdyeEAie~fekALel-~PdnaeA~~nLG~ay~q-lGr---------------yeEAie~yeKALeL~Pdn 1830 (1956)
+|..++..++.|.++...+.+--++ -|+.+...+.-|.+..+ .++ -..|++.+.+|++.+|..
T Consensus 300 nLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 300 NLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999888885433 24555555544443322 111 124667888888888876
Q ss_pred HHHHHHHH------HHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1831 VRARYNLG------ITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1831 aeA~~~LA------~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
+..+..+- .-+.+.|+ .||+.|---.++.-.+.+.++..
T Consensus 380 p~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~l 424 (539)
T PF04184_consen 380 PKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNL 424 (539)
T ss_pred chhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHH
Confidence 65544321 12344554 66776666666555544444433
|
The molecular function of this protein is uncertain. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.037 Score=67.56 Aligned_cols=217 Identities=16% Similarity=0.093 Sum_probs=167.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHH-----HHHHHHHHHHHc
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI---EPKNLE-----ALMAISICFTNE 1686 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL---dPdnae-----Al~~LA~aY~~l 1686 (1956)
....|.++.|+.+-+++-...|.-+.++...-...+..|+++.|+++.+..... .++..+ .+...+.... .
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-d 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-D 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-c
Confidence 346799999999999999999999999998888999999999999999876553 233221 1222233222 3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
.+...|...-.+++++ .|+ ...+-..-+..++..|+..++-.+++.+.+..|.- .
T Consensus 243 adp~~Ar~~A~~a~KL----~pd---------------lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP----~-- 297 (531)
T COG3898 243 ADPASARDDALEANKL----APD---------------LVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP----D-- 297 (531)
T ss_pred CChHHHHHHHHHHhhc----CCc---------------cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh----H--
Confidence 4578888899999998 666 33344566889999999999999999999999874 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRS---ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fek---ALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
++.+|....--+.++.-+++ ...+.|++.+....++......|++..|...-+.+....|.. .++..|+.+-..
T Consensus 298 --ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeA 374 (531)
T COG3898 298 --IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEA 374 (531)
T ss_pred --HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhh
Confidence 23344433333334444444 445689999999999999999999999999999999988874 466777887766
Q ss_pred c-CCHHHHHHHHHHHHHh
Q psy8682 1844 L-GANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1844 l-GdyEEAie~yekALeL 1860 (1956)
. |+-.++...+-++++-
T Consensus 375 etGDqg~vR~wlAqav~A 392 (531)
T COG3898 375 ETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccCchHHHHHHHHHHhcC
Confidence 5 9999999999999874
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0046 Score=71.13 Aligned_cols=190 Identities=11% Similarity=0.079 Sum_probs=132.7
Q ss_pred HHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchh
Q psy8682 1649 LAENEQDPQAIAALSKCLSIE------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKL 1722 (1956)
Q Consensus 1649 y~~lGdyeEALe~yeKALeLd------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl 1722 (1956)
+.-.+++++|.++|.++-... ..-..++...|.++.+.|.-.+|-..|-.+-.. |...- .
T Consensus 24 fgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c----------ykk~~----~ 89 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC----------YKKVD----P 89 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH----------hhccC----h
Confidence 334458899999998876543 122356777888888888877777777766655 33332 1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-----
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL-SDEYDKAVDCFRSALQVRPDD----- 1796 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~-lGdyeEAie~fekALel~Pdn----- 1796 (1956)
.+.+..+..-..+|...|++..|..+ +..+|.+|.. +.++++|+.+|+++-+.....
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~-----------------~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKH-----------------HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhh-----------------hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 23444455566778888888776544 3445555543 378888999999887765332
Q ss_pred -HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1797 -SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV-------RARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1797 -aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna-------eA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
...+...+..-..+++|.+|+..|++.....-++. ..++.-|.|++...+.-.+...+++..+++|...+.+
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 24566677777889999999999999887544432 2355668888888899899999999999999987754
Q ss_pred h
Q psy8682 1869 T 1869 (1956)
Q Consensus 1869 ~ 1869 (1956)
-
T Consensus 233 E 233 (288)
T KOG1586|consen 233 E 233 (288)
T ss_pred H
Confidence 3
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0057 Score=76.66 Aligned_cols=192 Identities=14% Similarity=0.124 Sum_probs=130.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhh
Q psy8682 1645 LGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724 (1956)
Q Consensus 1645 LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e 1724 (1956)
+..-..+..+.++-++.-++|++++|+.+++|..||.- ...-..+|.++|+++++. ... ..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkA----gE~------~l------- 234 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKA----GEA------SL------- 234 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHH----HHH------hh-------
Confidence 33444566777888899999999999999999888752 234578999999999887 111 11
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD--DSRLWNR 1802 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd--naeA~~n 1802 (1956)
.........|..-+ .......+ .-..+...+|.+..++|+.++|++.++..++..|. +..+..+
T Consensus 235 ------g~s~~~~~~g~~~e-------~~~~Rdt~-~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Iren 300 (539)
T PF04184_consen 235 ------GKSQFLQHHGHFWE-------AWHRRDTN-VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIREN 300 (539)
T ss_pred ------chhhhhhcccchhh-------hhhccccc-hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHH
Confidence 00011111111111 11111111 22456778999999999999999999999998775 4568999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhcCCCh
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQL-SPGFVRARYNLGITCVH-LGA---------------NTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL-~PdnaeA~~~LA~ay~k-lGd---------------yEEAie~yekALeLdPdn~ 1865 (1956)
|..++..+++|.++...+.+.-.+ -|+.+...+..|.+..+ .++ -..|++.+.+|++.+|..+
T Consensus 301 Lie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 301 LIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999886443 35555555555444322 111 2357789999999999977
Q ss_pred hchh
Q psy8682 1866 DGLT 1869 (1956)
Q Consensus 1866 dA~~ 1869 (1956)
.-+.
T Consensus 381 ~YLL 384 (539)
T PF04184_consen 381 KYLL 384 (539)
T ss_pred hhhh
Confidence 6433
|
The molecular function of this protein is uncertain. |
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0032 Score=66.73 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----RLWNRLG 1804 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna----eA~~nLG 1804 (1956)
+-..|..+...|+.+.|++.|.+++.+.|.. +.+|++.+..+..+|+.++|+..+++++++..... .++...|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~r---aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPER---ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccc---hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 4445778888999999999999999999998 99999999999999999999999999999875533 5678889
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCc
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~Pdn 1830 (1956)
.+|..+|+-+.|...|+.|-++....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999999988776543
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0057 Score=70.70 Aligned_cols=204 Identities=11% Similarity=0.033 Sum_probs=124.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~ 1677 (1956)
.+..+...+..+...++|++|..++.++.+-..++ +.++-..|.+......+.++..+|++|..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~---------- 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE---------- 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------
Confidence 44555666666666677777777777766543332 12233333333333444444444444322
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
.|...|..+.|...++++- -..+.-++++|+.+|++++.+..
T Consensus 100 ----lY~E~GspdtAAmaleKAa----------------------------------k~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 100 ----LYVECGSPDTAAMALEKAA----------------------------------KALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred ----HHHHhCCcchHHHHHHHHH----------------------------------HHhhcCCHHHHHHHHHHHHHHHh
Confidence 2444444444444444443 34456678889999999887654
Q ss_pred CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--
Q psy8682 1758 SQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL-- 1826 (1956)
Q Consensus 1758 ~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel------~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL-- 1826 (1956)
.. ......+...++++.+..++.+|...+.+-... .+....++.....+|....+|..|..+|+...++
T Consensus 142 ~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 142 EDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred ccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 33 223456667788899999999988877764322 2444456666667777788999999999998775
Q ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1827 --SPGFVRARYNLGITCVHLGANTQAVEHFLT 1856 (1956)
Q Consensus 1827 --~PdnaeA~~~LA~ay~klGdyEEAie~yek 1856 (1956)
.+++..+..+|-..| ..|+.++....+..
T Consensus 222 f~~sed~r~lenLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 222 FLKSEDSRSLENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred ccChHHHHHHHHHHHHh-ccCCHHHHHHHHcC
Confidence 355666777776665 45777777665543
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.017 Score=67.41 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
+..++..++-+. .+.+.++.++...|.|.-++..+++.++. +|. ........+|.+
T Consensus 166 ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~----~~e--------------~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 166 ESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKY----YPE--------------QEPQLLSGLGRI 221 (366)
T ss_pred hhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHh----CCc--------------ccHHHHHHHHHH
Confidence 444555555443 25667777777788888888888888877 544 122234457778
Q ss_pred HHhcCCHHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1736 LSSREIHQQVLSLYLNAARQC----PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~----P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
.++.|+.+.|..++++.-+.. ... ....+..+.+.+|.-.+++..|...|.+++..+|.++.+.++.|.|+...|
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~kL~~~q-~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQKLDGLQ-GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhccc-hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 888888888888887554322 211 234566777888888889999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCc
Q psy8682 1812 RPEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~Pdn 1830 (1956)
+..+|++..+.+++..|..
T Consensus 301 ~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 9999999999999988873
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0021 Score=68.12 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH----HHHHHHHHHH
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV----RARYNLGITC 1841 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna----eA~~~LA~ay 1841 (1956)
+-..|.++...|+.+.|++.|.+++.+.|..+.+|++.+.++.-+|+.++|+..+++|+++.-... .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 445578888999999999999999999999999999999999999999999999999999865433 4788999999
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1842 VHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1842 ~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
..+|+.+.|...|+.|-++-...+
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999988865543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0004 Score=66.40 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy8682 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1671 dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Le 1750 (1956)
+-..++.++|.+|..+|++++|+.+|++++++ ...... ..+..+.++.++|.++...|++++|+++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI----------EEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----------HHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34568899999999999999999999999987 333321 134567888899999999999999999999
Q ss_pred HHHHh
Q psy8682 1751 NAARQ 1755 (1956)
Q Consensus 1751 kALel 1755 (1956)
+++++
T Consensus 71 ~al~i 75 (78)
T PF13424_consen 71 KALDI 75 (78)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98875
|
... |
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0062 Score=75.40 Aligned_cols=159 Identities=9% Similarity=-0.007 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HHhCCC--------CHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKC-LSIEPK--------NLEALM 1677 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKA-LeLdPd--------naeAl~ 1677 (1956)
+....-..|....+...+..-.+-+.....+.+.++...+..++..|++.+|.+.+... +...|. ....++
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence 44455556677777778887778887777888999999999999999999999988653 222232 123468
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-C----CCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRP-G----QESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALel-g----~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
++|-+++..|.|..+..+|.++++. + ....|. ..+. +. ........++.|..|...|++-.|.++|.++
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~-~~~t-ls----~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPA-KTFT-LS----QNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCC-ccee-hh----cccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 9999999999999999999999962 0 000111 0000 00 1234567899999999999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHH
Q psy8682 1753 ARQCPSQSIDPDVQNGLGVLFN 1774 (1956)
Q Consensus 1753 Lel~P~n~~~a~a~~~LG~ly~ 1774 (1956)
......+ +..|..+|.+.+
T Consensus 362 v~vfh~n---PrlWLRlAEcCi 380 (696)
T KOG2471|consen 362 VHVFHRN---PRLWLRLAECCI 380 (696)
T ss_pred HHHHhcC---cHHHHHHHHHHH
Confidence 9988887 888998888754
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00085 Score=74.74 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDE----------YDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1742 yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGd----------yeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
++.|.+.++.....+|.+ ++.+++-|.++..+.+ +++|+.-|++||.++|+...+++++|.+|..++
T Consensus 7 FE~ark~aea~y~~nP~D---adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD---ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh---HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 455666666666666665 6666666655544422 234444444455555555555555555544333
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
.+ .|+... ...-+++|..+|++|...+|++...+..|
T Consensus 84 ~l-------------~~d~~~----------A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 84 FL-------------TPDTAE----------AEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HH----------------HHH----------HHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred hh-------------cCChHH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 20 000000 00115667777777777777766544444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.022 Score=72.57 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1829 dnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
..+.++..++..+...|++++|-++|-+|++++.-
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 34567888888888899999999999999888754
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.022 Score=66.12 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=110.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALel------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.....|-.+..+=.|...|+++.-+ -+.-...+..-...|...|..+.|-..+++|-+.
T Consensus 56 kA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~--------------- 120 (308)
T KOG1585|consen 56 KASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA--------------- 120 (308)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH---------------
Confidence 3333555555555555555554322 2333444444556677888888888877776553
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ----CPSQ 1759 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel----~P~n 1759 (1956)
....++++|+++|++++.+ -.. -- +.......+-..+.++....++.+|...+.+-... ....
T Consensus 121 lenv~Pd~AlqlYqralav----ve~------~d---r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~ 187 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAV----VEE------DD---RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN 187 (308)
T ss_pred hhcCCHHHHHHHHHHHHHH----Hhc------cc---hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence 3445688888888888876 111 00 01223344556778889999999988777665332 1111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCChHHHHHHHH
Q psy8682 1760 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR----PDDSRLWNRLGASLANGNRPEEAVEAYH 1821 (1956)
Q Consensus 1760 ~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~----PdnaeA~~nLG~ay~qlGryeEAie~ye 1821 (1956)
.....+.....+|....+|..|..+++...++. +++..+..+|-..| ..|+.+++...+.
T Consensus 188 -~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 188 -SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred -cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 113445555566777789999999999987753 45566666665544 5677777665554
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0011 Score=76.23 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1731 nLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
.-|..|....+|..|+.+|.+++.++|.. +..+.+.+.+|+++++++.+.....+++++.|+...+++.+|..+...
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~---~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV---ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc---chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 34555555666666666666666666665 555666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHh
Q psy8682 1811 NRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1811 GryeEAie~yeKALe 1825 (1956)
..|++|+..+.+|..
T Consensus 92 ~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYS 106 (284)
T ss_pred ccccHHHHHHHHHHH
Confidence 666666666666644
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0031 Score=70.42 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=56.4
Q ss_pred hhhhHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHH
Q psy8682 1722 LTRLANHTLTFRSPLSSREI----------HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY----DKAVDCFR 1787 (1956)
Q Consensus 1722 l~e~a~a~lnLA~ay~~lGd----------yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdy----eEAie~fe 1787 (1956)
.|..++.+++-|.++..+.+ +++|+.-|++|+.++|+. ..+++.+|.+|..++.+ .+|..+
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~---hdAlw~lGnA~ts~A~l~~d~~~A~~~-- 95 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK---HDALWCLGNAYTSLAFLTPDTAEAEEY-- 95 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH---HHHHHHH--
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHhhcCChHHHHHH--
Confidence 47788899999999986644 456778888889999999 99999999999765532 222222
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH
Q psy8682 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832 (1956)
Q Consensus 1788 kALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae 1832 (1956)
|++|..+|++|...+|++..
T Consensus 96 -------------------------F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 96 -------------------------FEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp -------------------------HHHHHHHHHHHHHH-TT-HH
T ss_pred -------------------------HHHHHHHHHHHHhcCCCcHH
Confidence 45677788888888887654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.19 Score=61.02 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-----
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PD----- 1795 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-Pd----- 1795 (1956)
......+..++.+..+.|.++.|...+.++....+.. ...+.+....+.++...|+..+|+..++..+... ..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 3566778899999999999999999999998876433 1246788888999999999999999998888721 10
Q ss_pred ----------------------------CHHHHHHHHHHHHHC------CChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1796 ----------------------------DSRLWNRLGASLANG------NRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1796 ----------------------------naeA~~nLG~ay~ql------GryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
.+.++..+|...... +..++++..|.++++++|....+|+.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 013344455555555 6666667777777777776666666666655
Q ss_pred HH
Q psy8682 1842 VH 1843 (1956)
Q Consensus 1842 ~k 1843 (1956)
..
T Consensus 303 ~~ 304 (352)
T PF02259_consen 303 DK 304 (352)
T ss_pred HH
Confidence 43
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0021 Score=74.01 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
++-+-..|..++...+|+.|+.+|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+...+++.+|..+.
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 44556678888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcC
Q psy8682 1685 NEACLHDALDTLKDKIRPG 1703 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg 1703 (1956)
....|++|+..+.++..+.
T Consensus 90 ~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hhccccHHHHHHHHHHHHH
Confidence 9999999999999997773
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.043 Score=65.82 Aligned_cols=166 Identities=11% Similarity=-0.002 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc
Q psy8682 1641 VWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS 1720 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~ 1720 (1956)
-....+.++...|++.+|-...++.++-.|.+.-++..--.++...|+.......+++.+.. -+++
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~d----------- 170 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNAD----------- 170 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCC-----------
Confidence 34455667778899999999999999999999988888888899999999999999988765 1233
Q ss_pred hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q psy8682 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---- 1796 (1956)
Q Consensus 1721 Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---- 1796 (1956)
+|-.....-.++-.+...|-|++|.+..++++++++.+ ..+...++.++...|+++++.+.+.+.-..-...
T Consensus 171 -lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D---~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mla 246 (491)
T KOG2610|consen 171 -LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD---CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLA 246 (491)
T ss_pred -CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc---hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHH
Confidence 12223334456788889999999999999999999998 8888889999999999999999988754322111
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1797 SRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1797 aeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
..-|...|.++...+.|+.|++.|.+-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 1235567888889999999999998865
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.11 Score=68.21 Aligned_cols=240 Identities=18% Similarity=0.148 Sum_probs=160.1
Q ss_pred cHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHh
Q psy8682 1604 NETNAFALGQEKLRQ-----GDLPSAILYLEAAAKQ-----EPDNAEVWLSLGISLAENE-----QDPQAIAALSKCLSI 1668 (1956)
Q Consensus 1604 daeall~LG~aylk~-----GdydEAIe~fekALel-----dPdnaeAl~~LA~ay~~lG-----dyeEALe~yeKALeL 1668 (1956)
+..+.+.+|.++..- .|.+.|+.+|+.+... .-.++.+.+.+|.+|.+.. ++..|+.+|.++.+.
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 445777778777654 5899999999999761 1125568889999999853 678899999999876
Q ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh----cCC
Q psy8682 1669 EPKNLEALMAISICFTNEA---CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS----REI 1741 (1956)
Q Consensus 1669 dPdnaeAl~~LA~aY~~lG---dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~----lGd 1741 (1956)
. ++++.+.+|.++..-. ++..|.++|..|... ....+.+.++.+|.. ..+
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~---------------------G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA---------------------GHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------------------CChHHHHHHHHHHHhCCCcCCC
Confidence 5 4567888999887665 567999999998877 234566777777763 468
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH----CCC
Q psy8682 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-DEYDKAVDCFRSALQVRPDDS----RLWNRLGASLAN----GNR 1812 (1956)
Q Consensus 1742 yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-GdyeEAie~fekALel~Pdna----eA~~nLG~ay~q----lGr 1812 (1956)
...|..+++++.+..+ +.+...++..+..- +.++.+...+.......-..+ ............ ..+
T Consensus 380 ~~~A~~~~k~aA~~g~-----~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-----PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred HHHHHHHHHHHHHccC-----hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccc
Confidence 8999999999999873 34555555555432 677666665555444322211 111111111111 123
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHL----GANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1813 yeEAie~yeKALeL~PdnaeA~~~LA~ay~kl----GdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
...+...+.++.. ..+..+...||.+|..- .+++.|...|.+|.... +.+.+++|.++.
T Consensus 455 ~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e 517 (552)
T KOG1550|consen 455 LERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHE 517 (552)
T ss_pred hhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHh
Confidence 4555555555543 45667777777777654 34778888888877766 667777777664
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0015 Score=51.62 Aligned_cols=30 Identities=53% Similarity=1.000 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Q psy8682 828 QVDRARSIYERALDVDHRNITLWLKYTELE 857 (1956)
Q Consensus 828 d~ErARsIfERALs~~Pk~~dLWl~YadfE 857 (1956)
+.+++|.+|++++...|.+.++|+.|++||
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 445555555555555555555555555554
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0076 Score=74.63 Aligned_cols=220 Identities=15% Similarity=0.119 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----C-HHHHHHHHHHHHHcCChHHHHHHHHHHHH---hC---C--CC
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPD----N-AEVWLSLGISLAENEQDPQAIAALSKCLS---IE---P--KN 1672 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPd----n-aeAl~~LA~ay~~lGdyeEALe~yeKALe---Ld---P--dn 1672 (1956)
-..++.|.+++....+..|+.........-.. . +..-...-..+....+-++|+.++.-.-+ .. + ++
T Consensus 101 ~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~ 180 (696)
T KOG2471|consen 101 VMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNH 180 (696)
T ss_pred HHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 36778888888888888888877666543211 1 11223334445555666666665543221 10 0 00
Q ss_pred H-------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHH
Q psy8682 1673 L-------------------------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLAN 1727 (1956)
Q Consensus 1673 a-------------------------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~ 1727 (1956)
. .+.......|....+...+..-.+.++.+ . .+.+.
T Consensus 181 ~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~----a---------------~~s~~ 241 (696)
T KOG2471|consen 181 IPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI----A---------------QDSSM 241 (696)
T ss_pred cchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh----c---------------CCCcH
Confidence 0 11222233344444444444444444443 1 12344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNA-ARQCPSQS-----IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ-V-------- 1792 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekA-Lel~P~n~-----~~a~a~~~LG~ly~~lGdyeEAie~fekALe-l-------- 1792 (1956)
+....+..++..|++.+|.+.+... +...|... .....++++|.+++.+|.|.-+..+|.+|++ .
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 5566788899999999999987665 22223210 1234578999999999999999999999996 1
Q ss_pred CC---------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1793 RP---------DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1793 ~P---------dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.| ...++.++.|..|...|++-.|.++|.++......++..|..||.|+...
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11 24578999999999999999999999999999999999999999998753
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.1 Score=64.86 Aligned_cols=174 Identities=14% Similarity=0.107 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHH-HHhCCCCHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQ----EPDNAEVWLSLGISLAE---NEQDPQAIAALSKC-LSIEPKNLEA 1675 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALel----dPdnaeAl~~LA~ay~~---lGdyeEALe~yeKA-LeLdPdnaeA 1675 (1956)
+++...++-..|....+|+.-+.+.+.+-.+ -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 5668888888999999999999999988766 45567788899999999 99999999999994 4556788899
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1676 LMAISICFTNE---------ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1676 l~~LA~aY~~l---------GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
+..+|.+|... ...++|+..|.++.+. +|+ +.. -.|++.++...|...+..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~----~~~---~Y~-------------GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI----EPD---YYS-------------GINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC----Ccc---ccc-------------hHHHHHHHHHcCCcccch
Confidence 99999988653 3478999999999998 665 222 234455555555433222
Q ss_pred HHHHHHH--------HhC-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1747 SLYLNAA--------RQC-PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1747 e~LekAL--------el~-P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
.-+++.. +.. -+.......+..++.+....|++++|++++++++++.|...
T Consensus 280 ~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 280 EELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2111111 110 00011234445556666667777777777777777665543
|
|
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.013 Score=62.58 Aligned_cols=105 Identities=21% Similarity=0.421 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhc---CCCHHHHHHHHHHHHH---cC-CHHHHHHHHHHhhc---------ccCCCHHHHHHHHHHHHHc
Q psy8682 797 RKRKAFEDNIRKN---RMVISNWIKYAQWEES---QK-QVDRARSIYERALD---------VDHRNITLWLKYTELEMRN 860 (1956)
Q Consensus 797 RAR~lyEraL~~~---~~s~~lWlkYAqfE~~---~G-d~ErARsIfERALs---------~~Pk~~dLWl~YadfE~k~ 860 (1956)
..|+.||..|... ..-..+|.+|++|-.. .| .-..-..++||+++ .+|+..+||+.|+++-
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~--- 79 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC--- 79 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---
Confidence 3467788887432 2336899999999653 23 44556789999998 3566689999999983
Q ss_pred CChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q psy8682 861 RQVNHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRD 907 (1956)
Q Consensus 861 gnierARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERA 907 (1956)
++ .+.+|....+. --+.+.+|..|+.+.+..|+...|..||+++
T Consensus 80 ~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 80 DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 33 58888887763 2334889999999999999999999999863
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0086 Score=69.22 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.++.+++.|+...|+|-++++.....+...|.+..+++..|.+....=+..+|...|.++|+++|.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 455666667777777777777777777777777777777777776666777777777777777766
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.06 Score=64.71 Aligned_cols=169 Identities=11% Similarity=-0.044 Sum_probs=128.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-C 1756 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel-~ 1756 (1956)
.-+.+....|++.+|....++.++. .|. ..-+...--.++..+|+...-...+++.+.. +
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d----~Pt---------------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn 168 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDD----YPT---------------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN 168 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHh----Cch---------------hhhhhhhhhhHHHhccchhhhhhHHHHhccccC
Confidence 4455677889999999999999988 666 1122333346778888888888889888876 5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC----cHH
Q psy8682 1757 PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG----FVR 1832 (1956)
Q Consensus 1757 P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd----nae 1832 (1956)
++-+....+.-.++..+...|-|++|.+..++++++++.+..+...++.++...|++.++.+...+.-..-.. ...
T Consensus 169 ~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH 248 (491)
T KOG2610|consen 169 ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH 248 (491)
T ss_pred CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence 5542234455567777889999999999999999999999999999999999999999999988775332111 112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HhcCCCh
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTAL--NQQAATH 1865 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekAL--eLdPdn~ 1865 (1956)
-|..-|.++..-+.|+.|++.|++-+ ++..+++
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 35667888889999999999998765 3444444
|
|
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.002 Score=52.60 Aligned_cols=30 Identities=33% Similarity=0.736 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 862 QVNHARNLWDRAVTILPRANQFWYKYTYMEE 892 (1956)
Q Consensus 862 nierARsLFERAL~~~Pks~~LW~kYidfE~ 892 (1956)
++++||.||||.+...|.. +.|++|++||+
T Consensus 2 E~dRAR~IyeR~v~~hp~~-k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEV-KNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCCc-hHHHHHHHhhc
Confidence 4677777777777777664 77777777775
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.18 Score=67.21 Aligned_cols=234 Identities=14% Similarity=0.080 Sum_probs=140.7
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
+++|+++...-. .+..|-.+|.+.++.|...+|++.|-+| +++..|.....+..+.|+|++-+.++..|-+..
T Consensus 1091 ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1091 LDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 455555543221 3447777777777777777777777553 556667777777777777777777776665543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
.+ +.+-..|..+|.+.++..+-.+.+ . .|+ .. -....|+-++..+.|+.|.-+|
T Consensus 1164 ~E-~~id~eLi~AyAkt~rl~elE~fi----~-----gpN---~A-------------~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1164 RE-PYIDSELIFAYAKTNRLTELEEFI----A-----GPN---VA-------------NIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred cC-ccchHHHHHHHHHhchHHHHHHHh----c-----CCC---ch-------------hHHHHhHHHhhhhhhHHHHHHH
Confidence 21 112233444455555555443332 1 232 11 1234567777888888887776
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
... .-+..|+..+..+|+|..|....++| ++...|-..+.+....+.+.-|.-+=-..+ -
T Consensus 1218 ~~v-----------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii----v 1277 (1666)
T KOG0985|consen 1218 SNV-----------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNII----V 1277 (1666)
T ss_pred HHh-----------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEE----E
Confidence 543 23677888888888888888887775 445566666666666555554432211100 1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.++-+-.|...|...|-+++-+..++.++.+...+-..+..+|.+|.
T Consensus 1278 hadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1278 HADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred ehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 23345556666777777777777777777777666666666666663
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.12 Score=66.22 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH------HHHhC----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSK------CLSIE----PKNLE-ALMAISICFTNEACLHDALDTLKDK 1699 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeK------ALeLd----Pdnae-Al~~LA~aY~~lGdydEALe~leKA 1699 (1956)
|-.-|.+|.+..++++|+++|++ ++++. |.... .-..-|.-+...|+++.|+..|-++
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 34445555566666677666653 33332 32221 1223466667778888887766554
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0034 Score=49.64 Aligned_cols=32 Identities=31% Similarity=0.786 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 861 RQVNHARNLWDRAVTILPRANQFWYKYTYMEE 892 (1956)
Q Consensus 861 gnierARsLFERAL~~~Pks~~LW~kYidfE~ 892 (1956)
|++++||.+|++++..+|....+|..|++||+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 56889999999999999999999999999986
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0047 Score=53.55 Aligned_cols=42 Identities=26% Similarity=0.233 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy8682 732 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLF 773 (1956)
Q Consensus 732 ~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~yl 773 (1956)
|+++..|+..|...|++++|+++|+++++.+|++...|..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 578999999999999999999999999999999999998876
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0035 Score=78.23 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=100.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN 1809 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q 1809 (1956)
-+-+......+.++.|+..|.+|++++|+. +..+.+.+.++.+.+++..|+..+.+|++.+|....+|+..|.+...
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnc---a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNC---AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcc---eeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 345677888999999999999999999998 88888899999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1810 lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
++++.+|+..|++...+.|+.+.+...+..|-.
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999999988877766643
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.018 Score=69.09 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+.+..+..-|+-|++..+|..|...|.++++..-.+ .+.+..|.++|.+....|+|..|+..+.+++.++|.+..+++.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 345556677899999999999999999999876544 3567789999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
-|.|+..+.++++|..+++..++++.+
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999988776544
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0024 Score=79.59 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
.-.-+.-++.-+.|+.|+..|.+|++++|+.+..+.+.+.++.+.+++..|+..+.+|++++|....+|+..|.+...++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 33446667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1846 ANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
++.+|+..|++...+.|+.+.+...+-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 9999999999999999999987655543
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.032 Score=64.74 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQ--------EPDN----------AEVWLSLGISLAENEQDPQAIAALSKC 1665 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALel--------dPdn----------aeAl~~LA~ay~~lGdyeEALe~yeKA 1665 (1956)
...++...|+-+++.|+|.+|...|+.|+.. .|.. ...+.+++.|+...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999742 3443 346788999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1666 LSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1666 LeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
+..+|.+..+|+..|.+....=+.++|...+.+++++ +|.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l----dps 296 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL----DPS 296 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc----Chh
Confidence 9999999999999999999999999999999999999 887
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0047 Score=53.56 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=9.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
.+|..+|++++|++.|+++++.+|+++
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 333333333333333333333333333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.31 Score=59.22 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-C--C-------
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP----DDSRLWNRLGASLANGNRPEEAVEAYHTALQL-S--P------- 1828 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~P----dnaeA~~nLG~ay~qlGryeEAie~yeKALeL-~--P------- 1828 (1956)
...+..++.+..+.|.++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+.. . +
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 67899999999999999999999999988652 25678888899999999999999999888871 1 0
Q ss_pred ------------------C------cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1829 ------------------G------FVRARYNLGITCVHL------GANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1829 ------------------d------naeA~~~LA~ay~kl------GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
. ...++..+|...... +..++++..|.++++++|+...+|+..|..+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 0 124566777777777 889999999999999999999999988876643
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.2 Score=65.79 Aligned_cols=227 Identities=15% Similarity=0.100 Sum_probs=157.7
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC--
Q psy8682 1620 DLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN-----EQDPQAIAALSKCLSI-----EPKNLEALMAISICFTNEA-- 1687 (1956)
Q Consensus 1620 dydEAIe~fekALeldPdnaeAl~~LA~ay~~l-----GdyeEALe~yeKALeL-----dPdnaeAl~~LA~aY~~lG-- 1687 (1956)
+...|..+++.+-+. .+..+.+.+|.+|..- .+.+.|+.+|+.+.+. ....+.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887654 5678888888888754 6899999999999771 1124557889999998843
Q ss_pred ---CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCC
Q psy8682 1688 ---CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE---IHQQVLSLYLNAARQCPSQSI 1761 (1956)
Q Consensus 1688 ---dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG---dyeEAle~LekALel~P~n~~ 1761 (1956)
++..|+.+|.++.+. ....+.+.+|.++.... ++..|.++|..|.+..-
T Consensus 305 ~~~d~~~A~~~~~~aA~~---------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---- 359 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL---------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---- 359 (552)
T ss_pred ccccHHHHHHHHHHHHhc---------------------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC----
Confidence 678899999999888 12335677888887655 67899999999987643
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCCcHH----
Q psy8682 1762 DPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG-NRPEEAVEAYHTALQLSPGFVR---- 1832 (1956)
Q Consensus 1762 ~a~a~~~LG~ly~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql-GryeEAie~yeKALeL~Pdnae---- 1832 (1956)
..+.+.+|.+|.. ..+...|..+|.++.+.. .+.+...++..+... ++++.+.-.+....+..-....
T Consensus 360 -~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~ 436 (552)
T KOG1550|consen 360 -ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAA 436 (552)
T ss_pred -hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHH
Confidence 5688999998853 247899999999999987 566666666665543 8888887777666654332221
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCChhchhccccchhhh
Q psy8682 1833 ARYNLGITCVHL----GANTQAVEHFLTALNQQAATHDGLTPHGLEPRAV 1878 (1956)
Q Consensus 1833 A~~~LA~ay~kl----GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~l 1878 (1956)
............ .+...+...+.++.. ..++.+...+|.+|..-
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g 484 (552)
T KOG1550|consen 437 YLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYG 484 (552)
T ss_pred HHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeec
Confidence 111111111111 245566666666544 35667888888888643
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.076 Score=67.31 Aligned_cols=92 Identities=11% Similarity=0.008 Sum_probs=73.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAE--VWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEAC 1688 (1956)
Q Consensus 1611 LG~aylk~GdydEAIe~fekALeldPdnae--Al~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGd 1688 (1956)
.+.....+|+..+|..++..++-..|.... ++..+|.++.+.|...+|--.+..|+.-.|....-++.++.++..++.
T Consensus 219 as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~ 298 (886)
T KOG4507|consen 219 ASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGE 298 (886)
T ss_pred HHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhh
Confidence 334445578888999999888887766543 677888888889988888888888887777666668888888888888
Q ss_pred HHHHHHHHHHHHhc
Q psy8682 1689 LHDALDTLKDKIRP 1702 (1956)
Q Consensus 1689 ydEALe~leKALel 1702 (1956)
+......|..+.+.
T Consensus 299 ~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 299 YNHSVLCYDHALQA 312 (886)
T ss_pred hhhhhhhhhhhhcc
Confidence 88888888888887
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.41 Score=61.82 Aligned_cols=165 Identities=15% Similarity=0.047 Sum_probs=121.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCC
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS----SREIHQQVLSLYLNAARQCPS 1758 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~----~lGdyeEAle~LekALel~P~ 1758 (1956)
.--.|+-+.+++.+.++.+. ..-......+. .-.|+.....+. .....+.|.+++....+..|+
T Consensus 198 vGF~gdR~~GL~~L~~~~~~----~~i~~~la~L~--------LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~ 265 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASKS----ENIRSPLAALV--------LLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN 265 (468)
T ss_pred cCcCCcHHHHHHHHHHHhcc----CCcchHHHHHH--------HHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC
Confidence 33458899999999988765 11100011110 111222221121 356788999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH-HH
Q psy8682 1759 QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD----DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV-RA 1833 (1956)
Q Consensus 1759 n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd----naeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna-eA 1833 (1956)
. ...+...|+++...|+.++|++.|++++..... ....++.+|.++..+++|++|..+|.+..+.+.-.. -.
T Consensus 266 s---~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 266 S---ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred c---HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 8 888999999999999999999999998854332 335688999999999999999999999999766543 34
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHHhcC
Q psy8682 1834 RYNLGITCVHLGAN-------TQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1834 ~~~LA~ay~klGdy-------EEAie~yekALeLdP 1862 (1956)
.|..|.++..+|+. ++|.++|.++-.+..
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 56778899999999 778788877766544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=63.16 Aligned_cols=111 Identities=14% Similarity=0.255 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhCC---CCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCC---------CHHHH
Q psy8682 749 DKAVDCFRSALQVRP---DFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRM---------VISNW 816 (1956)
Q Consensus 749 EkArelFerALkkfP---~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~---------s~~lW 816 (1956)
++.+..|+..+.... +--.+|.+|++.+....|. .+.. .....++|+|++.+.. ...+|
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~--~~~~-------~~L~~lLer~~~~f~~~~~Y~nD~RylkiW 72 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPS--GGKQ-------SGLLELLERCIRKFKDDERYKNDERYLKIW 72 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTT--CCCC-------HHHHHHHHHHHHHHTTSGGGTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCC--CCch-------hHHHHHHHHHHHHHhhhHhhcCCHHHHHHH
Confidence 456777888877654 3368999999888744433 1111 1234577777765522 25799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy8682 817 IKYAQWEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAV 874 (1956)
Q Consensus 817 lkYAqfE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL 874 (1956)
++||++.. .++.||..+.+ ...+...+|..|+.+....|++++|..||++++
T Consensus 73 i~ya~~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 73 IKYADLSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTTBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 99999743 88899998887 677889999999999999999999999999875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.099 Score=67.28 Aligned_cols=167 Identities=13% Similarity=0.031 Sum_probs=120.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCChHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDN-AEV------WLSLGISLA----ENEQDPQAIAALSKCLSIEPKNLEALM 1677 (1956)
Q Consensus 1609 l~LG~aylk~GdydEAIe~fekALeldPdn-aeA------l~~LA~ay~----~lGdyeEALe~yeKALeLdPdnaeAl~ 1677 (1956)
..+-...--.||-+.++..+.++.+...-. +-+ |+.....+. .....+.|.+.+....+..|+..-.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 333333334689999999999987732111 111 111111111 234678899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
..|+++...|+.++|++.+++++.. ... +.++. .-.++.+|.++..+.+|++|..++.+..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~----q~~---~~Ql~--------~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIES----QSE---WKQLH--------HLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccc----hhh---HHhHH--------HHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 9999999999999999999999865 333 44332 23477899999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEY-------DKAVDCFRSALQV 1792 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdy-------eEAie~fekALel 1792 (1956)
-+ .+...+..|.++...|+. ++|.++|.++-..
T Consensus 337 WS--ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 337 WS--KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cH--HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 43 244566778888888888 7777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.6 Score=58.22 Aligned_cols=298 Identities=13% Similarity=0.021 Sum_probs=190.4
Q ss_pred hhhhHHHHHhc--hhhHhHhhhhccCCCccHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCC--C----HHHHHHHHH
Q psy8682 1577 WFSDFSRNQRS--SVSMHEYTFAEDNPMQNETNAFALGQEKL-RQGDLPSAILYLEAAAKQEPD--N----AEVWLSLGI 1647 (1956)
Q Consensus 1577 WL~dYeeALs~--s~ydKAlqL~p~NP~~daeall~LG~ayl-k~GdydEAIe~fekALeldPd--n----aeAl~~LA~ 1647 (1956)
-+.+|.+.|.. .+++.+.+-.+-.|..++.+.+.+|.+++ ...+++.|..++++++.+... . ..+.+.++.
T Consensus 29 ~l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~ 108 (608)
T PF10345_consen 29 QLKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLAR 108 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 34555554443 23666664333455668889999999998 678999999999999887643 2 234567788
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC---CH-HHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCC-CCCCchhhhhhcCcc
Q psy8682 1648 SLAENEQDPQAIAALSKCLSIEPK---NL-EALMAI--SICFTNEACLHDALDTLKDKIRPGQE-SNPRPSAYKADALPS 1720 (1956)
Q Consensus 1648 ay~~lGdyeEALe~yeKALeLdPd---na-eAl~~L--A~aY~~lGdydEALe~leKALelg~e-~dPd~eay~~Ll~~~ 1720 (1956)
++.+.+... |+..++++++.... .. ...+.+ ...+...+++..|++.++........ .+|.
T Consensus 109 i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~----------- 176 (608)
T PF10345_consen 109 IYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA----------- 176 (608)
T ss_pred HHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH-----------
Confidence 888888887 99999999987544 11 122222 22233337999999999999887110 1111
Q ss_pred hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCC-CCCHHHHHHHHH--HHHHcCCHHHHHHHHHHH--
Q psy8682 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC------PSQ-SIDPDVQNGLGV--LFNLSDEYDKAVDCFRSA-- 1789 (1956)
Q Consensus 1721 Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~------P~n-~~~a~a~~~LG~--ly~~lGdyeEAie~fekA-- 1789 (1956)
...-+....+.+....+..+++++.++++.... +.. .....++..+-. ++...|+++.+...+++.
T Consensus 177 ---~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 177 ---VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred ---HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122233445667777888888888888774321 211 011233433333 445778877776665543
Q ss_pred -HHh---CC-------C---------------C--------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1790 -LQV---RP-------D---------------D--------------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1790 -Lel---~P-------d---------------n--------------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
+.. .+ + . .-+|..-|......+..+.|.+++.++++.-.+
T Consensus 254 ~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~ 333 (608)
T PF10345_consen 254 FLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEK 333 (608)
T ss_pred HHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHH
Confidence 211 11 0 0 123444466777888888999999998863111
Q ss_pred c--------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------Chhchhccccc
Q psy8682 1830 F--------------------------VRARYNLGITCVHLGANTQAVEHFLTALNQQAA---------THDGLTPHGLE 1874 (1956)
Q Consensus 1830 n--------------------------aeA~~~LA~ay~klGdyEEAie~yekALeLdPd---------n~dA~~~LG~l 1874 (1956)
. ....+.++.+..-++++..|......+...... .+..++..|..
T Consensus 334 ~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~ 413 (608)
T PF10345_consen 334 LKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY 413 (608)
T ss_pred hhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Confidence 0 113456777788899999999999888766432 35578888999
Q ss_pred hhhhcccHHHHHHHH
Q psy8682 1875 PRAVKEMSDSIWYSL 1889 (1956)
Q Consensus 1875 ~~~lg~~seAIws~L 1889 (1956)
+...|+.+.|...+.
T Consensus 414 ~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 414 YQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHcCCHHHHHHHHh
Confidence 999999988875544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.097 Score=63.23 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=95.2
Q ss_pred ccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q psy8682 1598 EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673 (1956)
Q Consensus 1598 p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn----aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna 1673 (1956)
.+.|...++.+-..|.-|++..+|..|+.+|.+.|+..-.+ +..|.+.|.+....|+|..|+.-..+++.++|.+.
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 34555578888899999999999999999999999875443 55788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
.+++.-|.+++.+.++++|...++..+.+
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999998877
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.69 Score=57.84 Aligned_cols=177 Identities=14% Similarity=0.160 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh---cCCHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS---REIHQQVLSL 1748 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~---lGdyeEAle~ 1748 (1956)
.++...++-..|....+|+.-+...+..-.+ |. .. ...........|.++.+ .|+.++|+..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-----p~---~~-------~~~~~~i~~~yafALnRrn~~gdre~Al~i 204 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-----PT---CD-------VANQHNIKFQYAFALNRRNKPGDREKALQI 204 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-----Cc---cc-------hhcchHHHHHHHHHHhhcccCCCHHHHHHH
Confidence 3456678888899999999999888876655 33 11 12334445667888887 9999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q psy8682 1749 YLNAARQCPSQSIDPDVQNGLGVLFNLS---------DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819 (1956)
Q Consensus 1749 LekALel~P~n~~~a~a~~~LG~ly~~l---------GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~ 1819 (1956)
+..++..... ..++++..+|.+|..+ ...++|+..|.++.+++|+ ...-.|++.++...|.-.+...-
T Consensus 205 l~~~l~~~~~--~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 205 LLPVLESDEN--PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred HHHHHhccCC--CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHH
Confidence 9996554432 2489999999998532 3478999999999999964 44455677777777764443332
Q ss_pred HHHHH-hh-----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1820 YHTAL-QL-----------SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1820 yeKAL-eL-----------~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
.++.. .+ .-.+...+-.++.+..-.|++++|+.++++++++.|. +|+
T Consensus 282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~---~W~ 340 (374)
T PF13281_consen 282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP---AWE 340 (374)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc---chh
Confidence 22222 11 1223445667788888999999999999999999877 775
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.67 Score=62.15 Aligned_cols=249 Identities=13% Similarity=0.020 Sum_probs=159.1
Q ss_pred hccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy8682 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEP-----DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1597 ~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldP-----dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd 1671 (1956)
..++|..-+...-..|..+...++..--... ++.-| .++......+.......++.+|..+..++...-+.
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~----~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~ 447 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAW----LKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKA 447 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHH----HHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCc
Confidence 3455654555555666667766665443333 33333 34566677788888899999999888887665433
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCH
Q psy8682 1672 ---------NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIH 1742 (1956)
Q Consensus 1672 ---------naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdy 1742 (1956)
........|.+....|++++|.+..+.++.. -|....+.. ..+...+|.+..-.|++
T Consensus 448 ~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~----L~~~~~~~r----------~~~~sv~~~a~~~~G~~ 513 (894)
T COG2909 448 PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ----LPEAAYRSR----------IVALSVLGEAAHIRGEL 513 (894)
T ss_pred CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----cccccchhh----------hhhhhhhhHHHHHhchH
Confidence 1123344577778889999999999999988 555222222 23566788999999999
Q ss_pred HHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1743 QQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEY--DKAVDCFRSAL----QVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1743 eEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdy--eEAie~fekAL----el~PdnaeA~~nLG~ay~qlGry 1813 (1956)
++|..+...+.+..... .....+.+..+.++..+|+. .+....|...- ...|.+.......+.++...-++
T Consensus 514 ~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~ 593 (894)
T COG2909 514 TQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRL 593 (894)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 99999999888774332 12344556667888888843 33333333322 22344444444444444433347
Q ss_pred HHHHHHHHHHHhhC----CCc--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1814 EEAVEAYHTALQLS----PGF--VR-ARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1814 eEAie~yeKALeL~----Pdn--ae-A~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+.+.....+.+++. |.. .. +++.|+.++...|++++|...+.+...+--+
T Consensus 594 ~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 594 DLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred hhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 77777766666542 222 22 3358899999999999999998888776544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.6 Score=52.16 Aligned_cols=168 Identities=21% Similarity=0.191 Sum_probs=115.5
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q psy8682 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN----EQDPQAIAALSKCLSIEPKNLEALMAISICFTN---- 1685 (1956)
Q Consensus 1614 aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l----GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~---- 1685 (1956)
.....+++..|...+..+-.. .++.+...++.+|... .+..+|...|+.+. ....+.+.+.||.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence 334566788888888877652 3346777788777754 46788999888544 45667788889998877
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhCCC
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE-------IHQQVLSLYLNAARQCPS 1758 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG-------dyeEAle~LekALel~P~ 1758 (1956)
..++.+|..+|.++.+.+ ++. ...+.+.++..|..-. +...|...|.++....
T Consensus 126 ~~d~~~A~~~~~~Aa~~g---~~~---------------a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 126 PLDLVKALKYYEKAAKLG---NVE---------------AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred ccCHHHHHHHHHHHHHcC---Chh---------------HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 458899999999998871 111 0122445555555431 2346888888887765
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1759 QSIDPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1759 n~~~a~a~~~LG~ly~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
+ +.+...+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...|
T Consensus 186 ~---~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 N---PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred C---HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 3 5678888877754 3478889999998888766 77788888 666555
|
|
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0049 Score=50.48 Aligned_cols=28 Identities=39% Similarity=0.719 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy8682 796 HRKRKAFEDNIRKNRMVISNWIKYAQWEE 824 (1956)
Q Consensus 796 ~RAR~lyEraL~~~~~s~~lWlkYAqfE~ 824 (1956)
+|||.+|||.|.. ..+++.|++||+||+
T Consensus 4 dRAR~IyeR~v~~-hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 4 DRARSIYERFVLV-HPEVKNWIKYAKFEE 31 (32)
T ss_pred HHHHHHHHHHHHh-CCCchHHHHHHHhhc
Confidence 4666666666654 345566666666653
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.11 Score=55.79 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----------------------AEVWLSLGISLAENEQDPQAIAALSK 1664 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn----------------------aeAl~~LA~ay~~lGdyeEALe~yeK 1664 (1956)
.+...|......|+...++..+++++.+.... ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34445666677788888888888888764321 23566778888899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1665 CLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1665 ALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
++..+|.+..++..+..+|...|+..+|+..|+++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998766
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.1 Score=55.95 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY-DKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdy-eEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
...|......++...++..+.+++.+.... .-+.... ..+ ......++.. ...+...++..+.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~-~l~~~~~---------~~W~~~~r~~l~~~------~~~~~~~l~~~~~ 73 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGD-FLPDLDD---------EEWVEPERERLREL------YLDALERLAEALL 73 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SS-TTGGGTT---------STTHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCC-CCCCCCc---------cHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 334555666778888888888888776654 1110000 111 1111122221 1245667788888
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
..|++++|+..+++++..+|.+-.++..+..+|...|+..+|+..|++..+.
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999988887554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.11 Score=62.16 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-SRLWNRLGASLA 1808 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn-aeA~~nLG~ay~ 1808 (1956)
+.-+.-....|++.+|...|..++...|++ ..+...++.+|...|+.+.|...+...=...... .......-..+.
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 344566778999999999999999999998 8999999999999999999988876632221111 111111112333
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+.....+. ..+++.+..+|++..+.+.+|..+...|++++|.+++-..++.+....
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 33333322 345566778999999999999999999999999999999998876633
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.25 Score=59.41 Aligned_cols=157 Identities=23% Similarity=0.247 Sum_probs=102.7
Q ss_pred eeccCCCCCCcchhhhhhcchhhhhhhHHH-HHHhhcchh-hhhhchhhhhhccccccCCCCCCCCcccccccccccCCC
Q psy8682 1427 VFDLRPRYGPILFCVSFQWINEVKFITLCL-IIEVNQHGI-HICGRQSYAERNQCFCFGPGKAQTGPLFSNGVASINQQP 1504 (1956)
Q Consensus 1427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ae~~~c~~~~p~~a~~~~lf~~a~aslgq~~ 1504 (1956)
.+-.+++-+||++=|---|-..-+-+||-| .+.--.+|- .++..++..+....-.+|..--|+.-.|..|...
T Consensus 36 ~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpV----- 110 (304)
T COG3118 36 EVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPV----- 110 (304)
T ss_pred HHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCc-----
Confidence 344567778999888888888888888877 444444443 4666677777766666665443555555444431
Q ss_pred CcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHH
Q psy8682 1505 VPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRN 1584 (1956)
Q Consensus 1505 v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeA 1584 (1956)
.. |.|.. +. +.+.+ | +
T Consensus 111 -dg-----------------F~G~q-------------------Pe---sqlr~-~-----------------l------ 126 (304)
T COG3118 111 -DG-----------------FQGAQ-------------------PE---SQLRQ-F-----------------L------ 126 (304)
T ss_pred -cc-----------------cCCCC-------------------cH---HHHHH-H-----------------H------
Confidence 00 00000 00 01110 1 0
Q ss_pred HhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 1585 QRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664 (1956)
Q Consensus 1585 Ls~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeK 1664 (1956)
++.+ +. ..+..+..+......|++.+|...|..+++..|++..+...++.+|...|+.+.|...+..
T Consensus 127 ------d~~~------~~-~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 127 ------DKVL------PA-EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred ------HHhc------Ch-HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 1111 11 2345667788888999999999999999999999999999999999999999999887765
Q ss_pred H
Q psy8682 1665 C 1665 (1956)
Q Consensus 1665 A 1665 (1956)
.
T Consensus 194 l 194 (304)
T COG3118 194 L 194 (304)
T ss_pred C
Confidence 3
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.2 Score=53.17 Aligned_cols=185 Identities=18% Similarity=0.129 Sum_probs=132.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhh
Q psy8682 1649 LAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE----ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724 (1956)
Q Consensus 1649 y~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l----GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e 1724 (1956)
....+.+..|...+.++-.. ....+...++.+|..- .+..+|..+|..+... .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------------------g 107 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------------------G 107 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc---------------------c
Confidence 34567788888888887662 2336777888877653 4578899988866655 2
Q ss_pred hHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhC
Q psy8682 1725 LANHTLTFRSPLSS----REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD-------EYDKAVDCFRSALQVR 1793 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~----lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG-------dyeEAie~fekALel~ 1793 (1956)
...+.+.+|.+|.. ..++.+|..+|.++.+..-.. ...+.+.+|.+|..-. +...|...|.++-...
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~--a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~ 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE--AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc
Confidence 34456778888876 459999999999999875433 0233778888876531 2337888888887765
Q ss_pred CCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---------------CHHHHHHHH
Q psy8682 1794 PDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG---------------ANTQAVEHF 1854 (1956)
Q Consensus 1794 PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG---------------dyEEAie~y 1854 (1956)
++.+...+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...| +...|...+
T Consensus 186 --~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~ 260 (292)
T COG0790 186 --NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWL 260 (292)
T ss_pred --CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHH
Confidence 78889999988865 3478999999999998766 78888888 776666 555566666
Q ss_pred HHHHHhcCC
Q psy8682 1855 LTALNQQAA 1863 (1956)
Q Consensus 1855 ekALeLdPd 1863 (1956)
..+....+.
T Consensus 261 ~~~~~~~~~ 269 (292)
T COG0790 261 QKACELGFD 269 (292)
T ss_pred HHHHHcCCh
Confidence 655554443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.1 Score=60.19 Aligned_cols=235 Identities=14% Similarity=-0.045 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPD---------NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL--- 1673 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPd---------naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna--- 1673 (1956)
...+..|..+....++++|..++.++...-+. .+...-..|.+....|+.++|+++.+.++..-|.+.
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 37778899999999999999999988765433 134556678888899999999999999999876543
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHH--HHHHHH
Q psy8682 1674 --EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQ--QVLSLY 1749 (1956)
Q Consensus 1674 --eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdye--EAle~L 1749 (1956)
.++..+|.+..-.|++++|..+..++.+. ... |.... -...+....+.++..+|+.. +....+
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~----a~~---~~~~~------l~~~~~~~~s~il~~qGq~~~a~~~~~~ 562 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQM----ARQ---HDVYH------LALWSLLQQSEILEAQGQVARAEQEKAF 562 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHH----HHH---cccHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46778899999999999999999998877 222 11111 23345566788888888333 333333
Q ss_pred HHH----HHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CH-HHHHHHHHHHHHCCChHHHHH
Q psy8682 1750 LNA----ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR----PD--DS-RLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1750 ekA----Lel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~----Pd--na-eA~~nLG~ay~qlGryeEAie 1818 (1956)
... +...|.+ .......+.++...-+++.+.......++.. |. .. .++..|+.++...|++++|..
T Consensus 563 ~~~~~q~l~q~~~~---~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~ 639 (894)
T COG2909 563 NLIREQHLEQKPRH---EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALA 639 (894)
T ss_pred HHHHHHHhhhcccc---hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 322 2223333 2222233333333333666666666666543 22 22 233588999999999999999
Q ss_pred HHHHHHhhCCCc-----HHH--HHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1819 AYHTALQLSPGF-----VRA--RYNLGITCVHLGANTQAVEHFLT 1856 (1956)
Q Consensus 1819 ~yeKALeL~Pdn-----aeA--~~~LA~ay~klGdyEEAie~yek 1856 (1956)
.+.+...+..+. ..+ +.-........|++++|.....+
T Consensus 640 ~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 640 QLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 998887653222 112 22223334567888888777666
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.0089 Score=49.51 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=17.2
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1820 YHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1820 yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
|++||+++|+++.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.016 Score=47.01 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555556666666666666555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.82 Score=57.73 Aligned_cols=196 Identities=12% Similarity=0.087 Sum_probs=132.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCch
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSKCLSIE---PK-------NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS 1711 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeKALeLd---Pd-------naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~e 1711 (1956)
+-.+..+-.-.|++.+|++....+.+.. |. .+...+.+|.....-+.++.|...|..+++. ...
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~----t~~-- 399 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL----TES-- 399 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh----hhH--
Confidence 4455666677899999998888777653 43 2334566777667778899999999999887 211
Q ss_pred hhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------CCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1712 AYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-------SIDPDVQNGLGVLFNLSDEYDKAVD 1784 (1956)
Q Consensus 1712 ay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n-------~~~a~a~~~LG~ly~~lGdyeEAie 1784 (1956)
..-.+....++|..|...++-+.-.+.++ .+.|.+ .....+++..|...+.++++.+|..
T Consensus 400 ----------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~ 466 (629)
T KOG2300|consen 400 ----------IDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKR 466 (629)
T ss_pred ----------HHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 11234456778999998777554444333 344543 1234567777888889999999999
Q ss_pred HHHHHHHhCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcHHH---HHHHHHHHHHcCC--HHHH
Q psy8682 1785 CFRSALQVRPD------DSRLWNRLGASLANGNRPEEAVEAYHTALQLS---PGFVRA---RYNLGITCVHLGA--NTQA 1850 (1956)
Q Consensus 1785 ~fekALel~Pd------naeA~~nLG~ay~qlGryeEAie~yeKALeL~---PdnaeA---~~~LA~ay~klGd--yEEA 1850 (1956)
.+.+.+++... .+-.+..||.+....|+..++....+-++++. |+.+.. ...+-.+|...|+ .+.+
T Consensus 467 ~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e 546 (629)
T KOG2300|consen 467 FLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEME 546 (629)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHH
Confidence 99999987621 12345667888889999999999888888764 443332 2344566777777 4555
Q ss_pred HHHHHH
Q psy8682 1851 VEHFLT 1856 (1956)
Q Consensus 1851 ie~yek 1856 (1956)
.+.|.+
T Consensus 547 ~e~~~~ 552 (629)
T KOG2300|consen 547 NEAFRK 552 (629)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.021 Score=45.90 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.011 Score=49.03 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1786 fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777777777777777777777777777775
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.022 Score=46.22 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.045 Score=44.00 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPD 1637 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPd 1637 (1956)
.++.+|.+++..|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.027 Score=68.06 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
+.-.+..|.+++|++.|..+++++|.. +..+...+.++.++++...|+..|..++.++|+...-|-..|.+...+|+
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~---a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPL---AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCch---hhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 444556777888888888888888877 77777888888888888888888888888888887777778888888888
Q ss_pred hHHHHHHHHHHHhhCCC
Q psy8682 1813 PEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1813 yeEAie~yeKALeL~Pd 1829 (1956)
+++|...+..+.+++-+
T Consensus 198 ~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHHHHHHHhcccc
Confidence 88888888888776543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.02 E-value=5.8 Score=47.87 Aligned_cols=222 Identities=17% Similarity=0.120 Sum_probs=129.4
Q ss_pred HHHcCChHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh----CC------CC---
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQE----PDN----AEVWLSLGISLAENE-QDPQAIAALSKCLSI----EP------KN--- 1672 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeld----Pdn----aeAl~~LA~ay~~lG-dyeEALe~yeKALeL----dP------dn--- 1672 (1956)
..+.|+++.|..++.++-... |+. +..+++.|......+ +++.|...+++++++ .+ +.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356889999999999986654 322 346788888888889 999999999999887 21 11
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHH---HHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHH
Q psy8682 1673 -LEALMAISICFTNEACLHDALD---TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL 1748 (1956)
Q Consensus 1673 -aeAl~~LA~aY~~lGdydEALe---~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~ 1748 (1956)
..++..++.+|...+.++...+ +++.+-.. .|+ .+..+...-.++...++.+++.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e----~~~---------------~~~~~~L~l~il~~~~~~~~~~~~ 143 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE----YGN---------------KPEVFLLKLEILLKSFDEEEYEEI 143 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh----CCC---------------CcHHHHHHHHHHhccCChhHHHHH
Confidence 2356788999988887654333 33333222 222 222332233444448899999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH---HHHHCC--C------hH
Q psy8682 1749 YLNAARQCPSQSIDPDVQNGLGVL-FNLSDEYDKAVDCFRSALQVR--PDDSRLWNRLGA---SLANGN--R------PE 1814 (1956)
Q Consensus 1749 LekALel~P~n~~~a~a~~~LG~l-y~~lGdyeEAie~fekALel~--PdnaeA~~nLG~---ay~qlG--r------ye 1814 (1956)
+.+++...+-. ....-..+..+ .........|..++...+... |.... +..... ++...+ + .+
T Consensus 144 L~~mi~~~~~~--e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~ 220 (278)
T PF08631_consen 144 LMRMIRSVDHS--ESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIE 220 (278)
T ss_pred HHHHHHhcccc--cchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHH
Confidence 99998865422 01111112222 112244567777777776543 33221 332222 222222 1 22
Q ss_pred HHHHHHHHHHhh--CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1815 EAVEAYHTALQL--SPGFV-------RARYNLGITCVHLGANTQAVEHFLTAL 1858 (1956)
Q Consensus 1815 EAie~yeKALeL--~Pdna-------eA~~~LA~ay~klGdyEEAie~yekAL 1858 (1956)
.....+....+. .|-.. ..+.+.|...++.++|++|...|+-++
T Consensus 221 ~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 221 SLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222333322211 22222 245677889999999999999999876
|
It is also involved in sporulation []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.56 Score=53.59 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
.+.+|..+...+++++|+..++.++....+......+-.+||++...+|++++|+..++..-.-. =.+......|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence 34556666666677777766666665433332334455566666666666666666655422100 01122334566666
Q ss_pred HCCChHHHHHHHHHHHhhCC
Q psy8682 1809 NGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~P 1828 (1956)
..|+-++|...|+++++..+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 171 AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HcCchHHHHHHHHHHHHccC
Confidence 66666666666666666543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.6 Score=54.67 Aligned_cols=174 Identities=14% Similarity=0.052 Sum_probs=108.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC-c
Q psy8682 1632 AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-P 1710 (1956)
Q Consensus 1632 LeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd-~ 1710 (1956)
++.+|.+.+++..++.++..+|++..|.+++++|+-.. ..+... .|....... .... .
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----------e~~~~~---------~F~~~~~~~--~~g~~r 91 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----------ERAFHP---------SFSPFRSNL--TSGNCR 91 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------HHHHHH---------Hhhhhhccc--ccCccc
Confidence 45667777777777777777777777777777765321 111100 000000000 0000 0
Q ss_pred hhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1711 SAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1711 eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
-.|.... ....-.+.+.....+.+.|-+..|+++.+-.+.++|.. ....+++.+-....+.++|+--+..++...
T Consensus 92 L~~~~~e----NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 92 LDYRRPE----NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE-DPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cCCcccc----chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-CcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 0011111 12334456667788889999999999999999999984 223445555556678888988888877765
Q ss_pred HhCC-----CCHHHHHHHHHHHHHCCCh---------------HHHHHHHHHHHhhCCCcH
Q psy8682 1791 QVRP-----DDSRLWNRLGASLANGNRP---------------EEAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1791 el~P-----dnaeA~~nLG~ay~qlGry---------------eEAie~yeKALeL~Pdna 1831 (1956)
.... ..+...+.++.++...++- ++|...+.+|+...|...
T Consensus 167 ~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 167 AKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 5211 1345667788888888888 899999999998877643
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.82 Score=57.69 Aligned_cols=204 Identities=12% Similarity=0.036 Sum_probs=141.9
Q ss_pred cCChHHHHHHHHHHHHhC------CCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1652 NEQDPQAIAALSKCLSIE------PKNL--------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1652 lGdyeEALe~yeKALeLd------Pdna--------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
.|-+++|.++-++++..- +... ..+-.++.+-.-.|++.+|++....+.+.+. ..|. ..+.
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~-r~p~----~~Ll 362 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCT-RFPT----PLLL 362 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCCc----hHHH
Confidence 455677777777666542 1111 1344567777788999999999888776510 0222 0011
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD- 1796 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn- 1796 (1956)
....+..+..+|.....-+.++.|...|..|.+.-......+....++|..|.+.|+-+.-.+.++ .+.|.+
T Consensus 363 ----r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt 435 (629)
T KOG2300|consen 363 ----RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNT 435 (629)
T ss_pred ----HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCC
Confidence 112445567788888899999999999999998755432345566789999999887554444333 344442
Q ss_pred ---------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1797 ---------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG------FVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1797 ---------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd------naeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
..+++..|...+.++++.||...+++.++...- ..-.+..|+.+..-.|+..++.+...-++++.
T Consensus 436 ~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 436 NSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 356777888899999999999999999987521 12356778999999999999999999998887
Q ss_pred CCChhc
Q psy8682 1862 AATHDG 1867 (1956)
Q Consensus 1862 Pdn~dA 1867 (1956)
...++.
T Consensus 516 kKi~Di 521 (629)
T KOG2300|consen 516 KKIPDI 521 (629)
T ss_pred hcCCCc
Confidence 665553
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.013 Score=70.80 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=87.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q psy8682 1771 VLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850 (1956)
Q Consensus 1771 ~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA 1850 (1956)
.-.+..|.+++|++.|..++.++|..+..+...+.++.++++...|+..|..|++++|+...-|...+.+...+|++++|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 33457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy8682 1851 VEHFLTALNQQAA 1863 (1956)
Q Consensus 1851 ie~yekALeLdPd 1863 (1956)
..++..+.+++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999998765
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.48 Score=54.09 Aligned_cols=120 Identities=14% Similarity=0.056 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHH
Q psy8682 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAY 1820 (1956)
Q Consensus 1744 EAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~y 1820 (1956)
+......+....++.+.+...+...++..+...|++++|+..++.++....+. +.+-.+||.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444455555555542233445667888899999999999999999764442 356678999999999999999988
Q ss_pred HHHHhhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1821 HTALQLSPG-FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1821 eKALeL~Pd-naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
..... +. ....-...|.++...|+.++|+..|++++...++.+
T Consensus 150 ~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 76432 22 123355689999999999999999999999986533
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.5 Score=57.18 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=134.3
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1617 RQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTL 1696 (1956)
Q Consensus 1617 k~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~l 1696 (1956)
.-+..+.|.++.++. +.+.+|..+|.+..+.|...+|++.|-+| +++..|.....+....|.|++-+.++
T Consensus 1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 345667777766654 46789999999999999999999999764 56678888888889999999999998
Q ss_pred HHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q psy8682 1697 KDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776 (1956)
Q Consensus 1697 eKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l 1776 (1956)
.-+-+..+ .|. .-..+..+|.+.++..+-.+.+ ..|+. + -.-..|.-++..
T Consensus 1157 ~MaRkk~~--E~~------------------id~eLi~AyAkt~rl~elE~fi-----~gpN~---A-~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1157 LMARKKVR--EPY------------------IDSELIFAYAKTNRLTELEEFI-----AGPNV---A-NIQQVGDRCFEE 1207 (1666)
T ss_pred HHHHHhhc--Ccc------------------chHHHHHHHHHhchHHHHHHHh-----cCCCc---h-hHHHHhHHHhhh
Confidence 88776611 122 1122445667777776654433 34554 2 245667778889
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
|.|+.|.-+|... .-|..|+..+..+|+|..|...-++| ++...|...+.++...+.+.-|.
T Consensus 1208 ~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred hhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHH
Confidence 9999998888653 44778999999999999999999887 45677877777777766665553
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=94.07 E-value=11 Score=55.72 Aligned_cols=288 Identities=10% Similarity=0.011 Sum_probs=156.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHc
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI-CFTNE 1686 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~-aY~~l 1686 (1956)
+...-..+...|+++.|..+|+++++.+|+....+...-...+..+.+...+-..+-.....++..+-++.++. +....
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 56666777889999999999999999999988888888888888888888888777666655655555555442 33566
Q ss_pred CCHHHHHHHHH-------------HHHhcCCCCCCC--chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1687 ACLHDALDTLK-------------DKIRPGQESNPR--PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1687 GdydEALe~le-------------KALelg~e~dPd--~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
++++.-..+.. +++-. .++ ......++. ........++. +....|-|..+.++.-+
T Consensus 1532 ~qwD~~e~~l~~~n~e~w~~~~~g~~ll~----~~~kD~~~~~~~i~----~~r~~~i~~ls-a~s~~~Sy~~~Y~~~~k 1602 (2382)
T KOG0890|consen 1532 SQWDLLESYLSDRNIEYWSVESIGKLLLR----NKKKDEIATLDLIE----NSRELVIENLS-ACSIEGSYVRSYEILMK 1602 (2382)
T ss_pred cchhhhhhhhhcccccchhHHHHHHHHHh----hcccchhhHHHHHH----HHHHHhhhhHH-HhhccchHHHHHHHHHH
Confidence 66665555432 00000 000 000000000 00000000111 11111233333333322
Q ss_pred HHH-------------hCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC----CCCHHHHHHHHHHHHH
Q psy8682 1752 AAR-------------QCPSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ---VR----PDDSRLWNRLGASLAN 1809 (1956)
Q Consensus 1752 ALe-------------l~P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALe---l~----PdnaeA~~nLG~ay~q 1809 (1956)
... ..++. ....+-|.++...-....+..+-+-.+++++- .+ ..-.+.|...|.+...
T Consensus 1603 LH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1603 LHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL 1682 (2382)
T ss_pred HHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh
Confidence 211 11111 01122233332222222223444444554432 12 2245778888888888
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--------h---------hchhccc
Q psy8682 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT--------H---------DGLTPHG 1872 (1956)
Q Consensus 1810 lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn--------~---------dA~~~LG 1872 (1956)
.|+++.|..+.-+|.+.. -+.++...|..+...|+...|+..+++.+.++-.+ | .+....+
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~ 1760 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT 1760 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH
Confidence 888888888887777665 45677778888888888888888888888554222 1 1222223
Q ss_pred cchhhhccc-HHHHHHHHHhccccCCC-Cccccccc
Q psy8682 1873 LEPRAVKEM-SDSIWYSLRGFHPPFGD-KLPHINLT 1906 (1956)
Q Consensus 1873 ~l~~~lg~~-seAIws~Lr~Al~l~gr-~~~al~La 1906 (1956)
......++. ..++..++..+.+..+. .+.+..++
T Consensus 1761 ~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1761 KYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 333334443 34677777777777763 34444444
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=93.92 E-value=3.5 Score=53.95 Aligned_cols=134 Identities=9% Similarity=-0.072 Sum_probs=74.9
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHcCChHHHH
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVW----------LSLGISLAENEQDPQAI 1659 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl----------~~LA~ay~~lGdyeEAL 1659 (1956)
++.|.++..+||. ++.|-.+|......-.++.|...|-+.-.. +. .... ...|.+-.--|++++|.
T Consensus 679 ledA~qfiEdnPH--prLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPH--PRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcCCc--hHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhh
Confidence 4567777788874 678888888888887888887777654221 11 1111 22334444457788887
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc
Q psy8682 1660 AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR 1739 (1956)
Q Consensus 1660 e~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l 1739 (1956)
+.|-.+-..+ .-..++..+|++-...+.++..-.- +.+ .....++.++|..+...
T Consensus 755 k~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d----~dD-------------~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 755 KLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSD----DDD-------------EGKEDAFRNIGETFAEM 809 (1189)
T ss_pred hhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCC----cch-------------HHHHHHHHHHHHHHHHH
Confidence 7775432221 1112344555555555444321111 111 12344566677777777
Q ss_pred CCHHHHHHHHHHH
Q psy8682 1740 EIHQQVLSLYLNA 1752 (1956)
Q Consensus 1740 GdyeEAle~LekA 1752 (1956)
..+++|.++|...
T Consensus 810 ~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777776554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.92 E-value=26 Score=44.93 Aligned_cols=142 Identities=6% Similarity=-0.166 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAE-----VWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI 1681 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnae-----Al~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~ 1681 (1956)
.+...|..+.+++++.+|...|.++.+...+.+. ++.++-.-.+-+++.+.-...+...-+..|..+-...-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4556899999999999999999999877655432 33333333344555555555555555567777777778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCC--chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy8682 1682 CFTNEACLHDALDTLKDKIRPGQESNPR--PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754 (1956)
Q Consensus 1682 aY~~lGdydEALe~leKALelg~e~dPd--~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALe 1754 (1956)
..++.+.|.+|++.+...-.......|. ......+. .....-.-.|.++...|++.++...+++.+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~------~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF------SDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh------hHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9999999999999987776551111222 00111111 1111223367888889999988888777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.1 Score=42.13 Aligned_cols=32 Identities=38% Similarity=0.481 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.+++.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666777777777777777777777777664
|
... |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.8 Score=54.22 Aligned_cols=156 Identities=17% Similarity=0.092 Sum_probs=108.2
Q ss_pred hhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------CC------------CC---H
Q psy8682 1589 VSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ--------------EP------------DN---A 1639 (1956)
Q Consensus 1589 ~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel--------------dP------------dn---a 1639 (1956)
+-+..+.+-..+|. ..++++.++.++..+|+...|.+++++|+-. ++ .| -
T Consensus 25 Dp~~l~~ll~~~Py-HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff 103 (360)
T PF04910_consen 25 DPNALINLLQKNPY-HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF 103 (360)
T ss_pred CHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH
Confidence 34455556677888 8999999999999999999999999999732 11 12 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1640 EVWLSLGISLAENEQDPQAIAALSKCLSIEPK-NLEA-LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1640 eAl~~LA~ay~~lGdyeEALe~yeKALeLdPd-naeA-l~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
.+++.....+.+.|-+..|+++.+-.+.++|. ++-. ++.+=....+.++|+--++.++..... . +...
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~----~-----~~~~- 173 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK----C-----YRNW- 173 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh----h-----hhhh-
Confidence 35667778888999999999999999999998 6644 344444455667787777777765542 0 1110
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHhCCCC
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIH---------------QQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdy---------------eEAle~LekALel~P~n 1759 (1956)
....+...+.++.++...++. ++|...+.+|+...|.-
T Consensus 174 ----~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 174 ----LSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ----hhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 011233445566667666666 77888888888777753
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.84 E-value=20 Score=43.35 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=86.9
Q ss_pred hHHHHHhchhhHhHhhhh-ccCC---CccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh----CC---C-------CHH
Q psy8682 1580 DFSRNQRSSVSMHEYTFA-EDNP---MQNETNAFALGQEKLRQG-DLPSAILYLEAAAKQ----EP---D-------NAE 1640 (1956)
Q Consensus 1580 dYeeALs~s~ydKAlqL~-p~NP---~~daeall~LG~aylk~G-dydEAIe~fekALel----dP---d-------nae 1640 (1956)
+++.|... +.|+-.+. ..+| ..-+..+|+.|...+..+ ++++|...++++.+. .+ . ...
T Consensus 8 ~~~~A~~~--~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 8 DLDLAEHM--YSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred CHHHHHHH--HHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 44445444 55554433 2333 224678899999999999 999999999999887 21 1 134
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1641 VWLSLGISLAENEQDP---QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdye---EALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
++..++.+|...+.++ +|..+++.+-...|+.+..+...-.+....++.+++.+.+.+++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 6788999999887764 5666666666667888877755555555589999999999999986
|
It is also involved in sporulation []. |
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.38 Score=51.60 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=74.1
Q ss_pred HHHHHHHHHH-hhC-CCC-HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhc---------CCCHHHHH
Q psy8682 750 KAVDCFRSAL-QVR-PDF-TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKN---------RMVISNWI 817 (1956)
Q Consensus 750 kArelFerAL-kkf-P~d-~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~---------~~s~~lWl 817 (1956)
.-+..|++.+ ... .+| -.+|.+|+.......|.. +... .-..++|||++.+ +...++|+
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g--~~~s-------~L~~lLerc~~~f~~~~~YknD~RyLkiWi 73 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQG--GKES-------GLLTLLERCIRYFEDDERYKNDPRYLKIWL 73 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCC--Cchh-------hHHHHHHHHHHHhhhhhhhcCCHHHHHHHH
Confidence 3456677666 211 233 589999999887544321 1111 2334666666543 22368999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 818 KYAQWEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDR 872 (1956)
Q Consensus 818 kYAqfE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFER 872 (1956)
+||++. + ..+.+|.-+.+ .-.+...+|..|+.+....|++..|..||+.
T Consensus 74 ~ya~~~---~---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 74 KYADNC---D---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 999873 3 35778877776 4567788899999999999999999999975
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=93.33 E-value=5 Score=47.91 Aligned_cols=202 Identities=14% Similarity=0.067 Sum_probs=140.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLH-DALDT 1695 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdyd-EALe~ 1695 (1956)
...-..|+.+-+.++.++|.+..+|...-.++..++ +..+-++++...++.+|.+..+|...-.+....|++. .-++.
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 335577899999999999999999988888877665 5677789999999999999999999888888889888 88889
Q ss_pred HHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy8682 1696 LKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL 1775 (1956)
Q Consensus 1696 leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~ 1775 (1956)
.+.++.. +.+ ... ++...-.++..-+.++.-+.+..+.++.+-.+ -.+|+.+-.+...
T Consensus 136 ~~~~l~~----DaK---NYH------------aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N---NSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 136 TKLMLDD----DAK---NYH------------AWSHRQWVLRFFKDYEDELAYADELLEEDIRN---NSAWNQRYFVITN 193 (318)
T ss_pred HHHHHhc----ccc---chh------------hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc---cchhheeeEEEEe
Confidence 9999887 444 111 22333456666777999999999999887655 3445433211111
Q ss_pred -cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC--ChHHHHHHHHHHH-hhCCCcHHHHHHHHHHH
Q psy8682 1776 -SD-----EYDKAVDCFRSALQVRPDDSRLWNRLGASLAN-GN--RPEEAVEAYHTAL-QLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1776 -lG-----dyeEAie~fekALel~PdnaeA~~nLG~ay~q-lG--ryeEAie~yeKAL-eL~PdnaeA~~~LA~ay 1841 (1956)
.| ..+.-+.+..+.+.+.|++..+|+.|.-++.. .| .+.+-.......+ +.....+..+.-+...|
T Consensus 194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 11 23445667778888999999999999888875 44 1333333333333 33334455555555555
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.24 Score=63.12 Aligned_cols=109 Identities=16% Similarity=0.082 Sum_probs=93.8
Q ss_pred HHHHH-HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1732 FRSPL-SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1732 LA~ay-~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
+|.+| ...|+...|++++..|+...|.. ......+||.++.+.|-.-.|-..+.+++.+....+...+.+|.++..+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~--~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQ--QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhh--hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 33444 46899999999999999998875 2345788999999999999999999999999988899999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
.+.+.|++.|++|++++|+++..-..|-.+..
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999887666554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.74 E-value=38 Score=43.47 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=44.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
|..++..|+|.++.-+-.=..++.| ++.++..+|.++...+.|.+| |.++...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA-~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEA-WEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHH-HHHHHhC
Confidence 4557789999999999999999999 799999999999998998665 4777754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.28 Score=58.53 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
.+...+..|.-..+.|+.++|..+|+.|+.++|.+++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.+..
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3445667777888999999999999999999999999999999999999999999999999999999999998877653
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.18 Score=40.79 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555544
|
... |
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=92.51 E-value=2 Score=51.02 Aligned_cols=66 Identities=8% Similarity=0.022 Sum_probs=44.6
Q ss_pred CCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy8682 1601 PMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA----EVWLSLGISLAENEQDPQAIAALSKCLS 1667 (1956)
Q Consensus 1601 P~~daeall~LG~aylk~GdydEAIe~fekALeldPdna----eAl~~LA~ay~~lGdyeEALe~yeKALe 1667 (1956)
|..+.+..|.-+..+. ..+.++|+..|++++++.+... .++-.+..+++++++|++-+..|.+.+.
T Consensus 24 pdVDlENQYYnsK~l~-e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 24 PDVDLENQYYNSKGLK-EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred CCcchHhhhhcccccc-ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3334455444444433 3378888999999888887653 3666677778888888888877777654
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.47 Score=56.80 Aligned_cols=69 Identities=26% Similarity=0.283 Sum_probs=45.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy8682 1771 VLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839 (1956)
Q Consensus 1771 ~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ 1839 (1956)
.-..+.|+.++|...|+.|+++.|.+++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.+.
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334456666677777777777777777666666666666666666666666666666666666655544
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=91.68 E-value=20 Score=53.31 Aligned_cols=132 Identities=11% Similarity=0.002 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHH---hCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1742 HQQVLSLYLNAAR---QCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1742 yeEAle~LekALe---l~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
..+-+-.+++++- .+|+. ......|...|++....|+++.|..++-+|.+.. -+.++...|..+-..|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 4444444555432 23322 2457889999999999999999999999888876 6788999999999999999999
Q ss_pred HHHHHHHhhC-CC----------c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCChhchhccccch
Q psy8682 1818 EAYHTALQLS-PG----------F------VRARYNLGITCVHLGAN--TQAVEHFLTALNQQAATHDGLTPHGLEP 1875 (1956)
Q Consensus 1818 e~yeKALeL~-Pd----------n------aeA~~~LA~ay~klGdy--EEAie~yekALeLdPdn~dA~~~LG~l~ 1875 (1956)
..+++.++.+ |+ . ..+.+.++......|+. ++-+++|..+.++.|...+.++.+|.-|
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 9999999653 22 1 12334444555555553 4557899999999999999999998544
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=91.51 E-value=4.5 Score=48.32 Aligned_cols=135 Identities=12% Similarity=0.124 Sum_probs=107.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
.++.+..+-..|+++...++.++|.+ ..+|..+-.++..+ .+..+-++++.+.+.-+|.+..+|...-.+....|+
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lNpAn---YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d 127 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLNPAN---YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD 127 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhCccc---chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC
Confidence 34445566678888888889998888 66666665555544 456777888888888889998898888888888888
Q ss_pred hH-HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1813 PE-EAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1813 ye-EAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
+. .-++..++++..+..+..+|...--+....+.++.-+.+..+.++.+--|..||+.+
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~R 187 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQR 187 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhee
Confidence 87 778888888888888888888888888888888888888888888887777777665
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.75 Score=55.37 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1801 NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1801 ~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|++++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 334444445555555555555555555555544555555555555555555555555555555444
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=91.20 E-value=2.8 Score=54.71 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHH
Q psy8682 1620 DLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---------EALMAISICFTNEACLH 1690 (1956)
Q Consensus 1620 dydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---------eAl~~LA~aY~~lGdyd 1690 (1956)
..++|+.+.+ .+| ++..|..+|......-.++-|...|-++-... .-. .--...|.+-..-|+++
T Consensus 678 gledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 678 GLEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred chHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 4556665543 334 68899999999888888888888777654321 110 00123344444568899
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy8682 1691 DALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG 1770 (1956)
Q Consensus 1691 EALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG 1770 (1956)
+|.+.|-.+-+. .+ ...++.+.|++-...++++..-.-..+ .....++.++|
T Consensus 752 eaek~yld~drr------------DL---------------Aielr~klgDwfrV~qL~r~g~~d~dD-~~~e~A~r~ig 803 (1189)
T KOG2041|consen 752 EAEKLYLDADRR------------DL---------------AIELRKKLGDWFRVYQLIRNGGSDDDD-EGKEDAFRNIG 803 (1189)
T ss_pred Hhhhhhhccchh------------hh---------------hHHHHHhhhhHHHHHHHHHccCCCcch-HHHHHHHHHHH
Confidence 998888665433 11 124556677777666666543221111 24467889999
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q psy8682 1771 VLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1771 ~ly~~lGdyeEAie~fekA 1789 (1956)
..+..+..+++|.++|.+.
T Consensus 804 ~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 804 ETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988764
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.24 Score=41.30 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1834 RYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1834 ~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
+.+||.+|.++|++++|+.+|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666664443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.35 Score=38.46 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+++.+|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666777777777777777777777777665
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=90.66 E-value=8.9 Score=45.81 Aligned_cols=51 Identities=6% Similarity=-0.070 Sum_probs=41.1
Q ss_pred HHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy8682 1581 FSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAK 1633 (1956)
Q Consensus 1581 YeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALe 1633 (1956)
-++|++. |++.+++.+.-...-..++-.+..+.+..|+|++-...|.+.+.
T Consensus 43 p~~Al~s--F~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 43 PKEALSS--FQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred HHHHHHH--HHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3678888 88888887766655667888888889999999999999988764
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=2 Score=51.79 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~ 1836 (1956)
.....++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-.-
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34566777788899999999999999999999999999999999999999999999999999999988765543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.48 E-value=1.7 Score=45.83 Aligned_cols=92 Identities=10% Similarity=0.164 Sum_probs=76.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcC----C-------hHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNA---EVWLSLGISLAENE----Q-------DPQAIAALSKCLSIEPKNLEAL 1676 (1956)
Q Consensus 1611 LG~aylk~GdydEAIe~fekALeldPdna---eAl~~LA~ay~~lG----d-------yeEALe~yeKALeLdPdnaeAl 1676 (1956)
+|..++..|++-+|+++.+..+..++++. ..+..-|.++..+. + .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788999999999999999999988765 45566777776543 2 3468999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1677 MAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1677 ~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
+.+|.-+-....|+++..-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998877777788888888888876
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.23 E-value=29 Score=46.57 Aligned_cols=241 Identities=15% Similarity=0.012 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCC-------------------HHHHHHHHHHHHHcCChHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQE-------PDN-------------------AEVWLSLGISLAENEQDPQAIA 1660 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeld-------Pdn-------------------aeAl~~LA~ay~~lGdyeEALe 1660 (1956)
.++--|......+..+.|.++++++++.- +.. ....+..+.+..-.+++..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 44445666677777778888888776531 110 1234566777788999999999
Q ss_pred HHHHHHHhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCCCchhhhhhcCcchhhhhHH
Q psy8682 1661 ALSKCLSIE---PK------NLEALMAISICFTNEACLHDALDTLKDKIRPG----QESNPRPSAYKADALPSKLTRLAN 1727 (1956)
Q Consensus 1661 ~yeKALeLd---Pd------naeAl~~LA~aY~~lGdydEALe~leKALelg----~e~dPd~eay~~Ll~~~Kl~e~a~ 1727 (1956)
....+.... |. .+..++..|..+...|+.+.|+.+|.+..-.. ....+. ..-..-
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~------------~El~il 450 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF------------RELYIL 450 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc------------hHHHHH
Confidence 988777653 22 35678889999999999999999998333110 000222 111233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCC-----CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhC-CC---
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAAR-QCPSQ-----SIDPDVQNGLGVLF--NLSDEYDKAVDCFRSALQVR-PD--- 1795 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALe-l~P~n-----~~~a~a~~~LG~ly--~~lGdyeEAie~fekALel~-Pd--- 1795 (1956)
+..++..++...+.-......+..+++ +.|.. .....++..+-.++ ...-...++...+.++++.. ..
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 455666666655543332212222222 23321 00011111111111 12223447888888777665 11
Q ss_pred ---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---HH-HH-----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1796 ---DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF---VR-AR-----YNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1796 ---naeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn---ae-A~-----~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
..-++..+|..++ .|+..+......++....... .. .| -.++..+...|+.++|.....+.-..
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 1234556666666 788888777777776643332 33 33 24556688899999998887776543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.47 Score=37.73 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCC
Q psy8682 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDF 765 (1956)
Q Consensus 733 dV~~~La~Ly~~sgeyEkArelFerALkkfP~d 765 (1956)
+++..+|.+|...|++++|.+.|++.++.+|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 467899999999999999999999999999975
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=89.52 E-value=18 Score=44.78 Aligned_cols=254 Identities=13% Similarity=0.089 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh---CC--CCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCHH-----
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQ---EP--DNAEVWLSLGISLA-ENEQDPQAIAALSKCLSIEPKNLE----- 1674 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALel---dP--dnaeAl~~LA~ay~-~lGdyeEALe~yeKALeLdPdnae----- 1674 (1956)
...+.+|..|.+.|++.+-.......-.. -+ ..+.....+-.... ..+....-+..+..+++.......
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq 128 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQ 128 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHH
Confidence 35566677777777666554444433211 11 11111111211111 122333445555555544322111
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1675 -ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1675 -Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
.-..+..+|...++|.+|+......++. ...+-.. ....+.+..-..+|....+..+|...+..|-
T Consensus 129 ~Learli~Ly~d~~~YteAlaL~~~L~rE----------lKKlDDK---~lLvev~llESK~y~~l~Nl~KakasLTsAR 195 (411)
T KOG1463|consen 129 SLEARLIRLYNDTKRYTEALALINDLLRE----------LKKLDDK---ILLVEVHLLESKAYHALRNLPKAKASLTSAR 195 (411)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH----------HHhcccc---cceeeehhhhhHHHHHHhcchhHHHHHHHHH
Confidence 2345788899999999999888777654 1111100 1223344445677888888888888877765
Q ss_pred HhCCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHH---HHHHHHHHCCChHHHH--HHHH
Q psy8682 1754 RQCPSQS----IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP---DDSRLWN---RLGASLANGNRPEEAV--EAYH 1821 (1956)
Q Consensus 1754 el~P~n~----~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P---dnaeA~~---nLG~ay~qlGryeEAi--e~ye 1821 (1956)
.....-. ..+.+-..-|.++....+|.-|..+|-+|++-.. ++..+.. .+-.+-..++..++-- -.-+
T Consensus 196 T~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K 275 (411)
T KOG1463|consen 196 TTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAK 275 (411)
T ss_pred HhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhH
Confidence 4321110 1222334446777777899999999999987532 2233333 3334444566666543 3345
Q ss_pred HHHhhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcCCChhchhccccch
Q psy8682 1822 TALQLSPGFVRARYNLGITCVH--LGANTQAVEHFLTALNQQAATHDGLTPHGLEP 1875 (1956)
Q Consensus 1822 KALeL~PdnaeA~~~LA~ay~k--lGdyEEAie~yekALeLdPdn~dA~~~LG~l~ 1875 (1956)
.+++......++....+.++.+ +.+++.|+..|..-+..+|= +...+..+|
T Consensus 276 ~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i---vr~Hl~~Ly 328 (411)
T KOG1463|consen 276 LALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI---VRSHLQSLY 328 (411)
T ss_pred HHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH---HHHHHHHHH
Confidence 5666666778888888888754 45788888888888877665 444444333
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=99 Score=42.13 Aligned_cols=123 Identities=9% Similarity=-0.039 Sum_probs=72.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPE 1814 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGrye 1814 (1956)
-....+.+.|...+.+......-. .....++..+|.-....+...+|...+..+..... +.........+....++++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHH
Confidence 345566778888887654444322 01122334444333333225667777776553322 2333333344445778887
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1815 EAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1815 EAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
.+...+...-..........|.+|.++..+|+.++|..+|+++..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777777665433344567788888888888888888888888743
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=89.29 E-value=42 Score=43.95 Aligned_cols=220 Identities=15% Similarity=0.066 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1622 PSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL----EALMAISICFTNEACLHDALDTLK 1697 (1956)
Q Consensus 1622 dEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna----eAl~~LA~aY~~lGdydEALe~le 1697 (1956)
....+.+.......|+++......+..+...|+.+.|+..++.+++ +... -.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555566677899998888999999999998888888888877 2211 245678888888889999999988
Q ss_pred HHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHH-HHHH--------hcCCHHHHHHHHHHH---HHhCCCC-CCC--
Q psy8682 1698 DKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFR-SPLS--------SREIHQQVLSLYLNA---ARQCPSQ-SID-- 1762 (1956)
Q Consensus 1698 KALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA-~ay~--------~lGdyeEAle~LekA---Lel~P~n-~~~-- 1762 (1956)
..... .+ |.+.. |..++ -++. ..|+-++|..+++.. ++..|.+ +.+
T Consensus 328 ~L~de-----sd---WS~a~-----------Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f 388 (546)
T KOG3783|consen 328 LLRDE-----SD---WSHAF-----------YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF 388 (546)
T ss_pred HHHhh-----hh---hhHHH-----------HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH
Confidence 88776 11 33322 11111 2221 233444444444333 2222222 000
Q ss_pred ------------------HH--HHHHHHHHHHHc--CCHHHHHHHHHHHHH---h-CCCCH-HHHHHHHHHHHHCCChHH
Q psy8682 1763 ------------------PD--VQNGLGVLFNLS--DEYDKAVDCFRSALQ---V-RPDDS-RLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1763 ------------------a~--a~~~LG~ly~~l--GdyeEAie~fekALe---l-~Pdna-eA~~nLG~ay~qlGryeE 1815 (1956)
.. .++.++..+..- ....+.. -++..+. . ++++. --+..+|.++..+|+...
T Consensus 389 ~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~ 467 (546)
T KOG3783|consen 389 IVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEV 467 (546)
T ss_pred HHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 00 112222222111 1111111 1111111 1 12222 234567888888888888
Q ss_pred HHHHHHHHHhh---CCC----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCC
Q psy8682 1816 AVEAYHTALQL---SPG----FVRARYNLGITCVHLGA-NTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1816 Aie~yeKALeL---~Pd----naeA~~~LA~ay~klGd-yEEAie~yekALeLdPd 1863 (1956)
|..+|..+++. ... .+.++|.||..|..+|. ..+|..++.+|-.-..+
T Consensus 468 a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 468 APKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 88888877742 111 35678888888888887 88888888888776544
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=89.27 E-value=3.1 Score=58.16 Aligned_cols=174 Identities=10% Similarity=-0.042 Sum_probs=121.9
Q ss_pred HHHHHHHHHHcCChHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1642 WLSLGISLAENEQDPQAIA------ALS-KCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe------~ye-KALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
....|......|.+.+|.+ .+. ..-.+.|+....+..|+.++..++++++|+....++.-+ +.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii----------~e 1004 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACII----------SE 1004 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceee----------ec
Confidence 3444555555555555555 444 233456788888999999999999999999998888776 22
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC-----PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~-----P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
...... .+.....+.+++......++...|+..+.++..+. |..+..+....+++.++...++++.|+.+.+.|
T Consensus 1005 R~~g~d-s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1005 RVLGKD-SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred hhccCC-CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 222111 45666778888888888889999999998887652 222223556688888888889999999999999
Q ss_pred HHhCC--------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1790 LQVRP--------DDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1790 Lel~P--------dnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
++... .....+..++.++...+++..|+...+....+
T Consensus 1084 ~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1084 LAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 88542 13455666777777777777777666665543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.12 E-value=9 Score=43.48 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=101.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHH
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD--D--SRLWNRLGASLA 1808 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd--n--aeA~~nLG~ay~ 1808 (1956)
+.-+...+..++|+..|...-+..-.. +...+....|.+....|+...|+..|.++-...+- - ..+...-+.++.
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~-YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGS-YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 344456788899999998887766554 45667788899999999999999999998765432 2 234556677888
Q ss_pred HCCChHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1809 NGNRPEEAVEAYHTAL-QLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1809 qlGryeEAie~yeKAL-eL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
..|-|++-....+..- ..+|-...+.-.||.+-.+.|++..|...|.+... +.+.|....+++
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 8999988766555432 23555677888999999999999999999998877 545444444443
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=89.00 E-value=6.3 Score=51.42 Aligned_cols=218 Identities=13% Similarity=-0.036 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQ--------------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALel--------------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd 1671 (1956)
..|-.+|...+..=+++-|.+.|.++-.+ ....+ --..+|.++...|++.+|.+.|.+.-..+
T Consensus 586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G~en-- 662 (1081)
T KOG1538|consen 586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRSGHEN-- 662 (1081)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcCchh--
Confidence 36888999888888999999999887432 11111 12346677777777777777776542211
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH-----HHHHHHHHhcCCHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT-----LTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~-----lnLA~ay~~lGdyeEAl 1746 (1956)
.--..|..+..++.|.+++..+- |. .-..+... ...+++ ...|..+...|+.++|+
T Consensus 663 ------RAlEmyTDlRMFD~aQE~~~~g~-------~~--eKKmL~RK----RA~WAr~~kePkaAAEmLiSaGe~~KAi 723 (1081)
T KOG1538|consen 663 ------RALEMYTDLRMFDYAQEFLGSGD-------PK--EKKMLIRK----RADWARNIKEPKAAAEMLISAGEHVKAI 723 (1081)
T ss_pred ------hHHHHHHHHHHHHHHHHHhhcCC-------hH--HHHHHHHH----HHHHhhhcCCcHHHHHHhhcccchhhhh
Confidence 11123445555555555443221 11 00111100 000111 12356667777777776
Q ss_pred HHHH------HHHH----hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q psy8682 1747 SLYL------NAAR----QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816 (1956)
Q Consensus 1747 e~Le------kALe----l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEA 1816 (1956)
...- -+++ ++... .+.+..++..+..+..+.-|.+.|.+.-. ...+-..+...+++.+|
T Consensus 724 ~i~~d~gW~d~lidI~rkld~~e---re~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eA 792 (1081)
T KOG1538|consen 724 EICGDHGWVDMLIDIARKLDKAE---REPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEA 792 (1081)
T ss_pred hhhhcccHHHHHHHHHhhcchhh---hhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHh
Confidence 5431 1121 12222 33444444444455555555555544211 11233445566777777
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1817 VEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1817 ie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
...-++--+.. ..+|+..|..+....++++|.+.|.+|=+
T Consensus 793 FalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 793 FALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred HhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 66655433322 34677778888888888888888877644
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=88.96 E-value=4.8 Score=43.01 Aligned_cols=110 Identities=16% Similarity=0.094 Sum_probs=62.9
Q ss_pred HHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1675 ALMAISIC--FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1675 Al~~LA~a--Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
+|..|+.. ....|.|++|...+++++...+. -|..+.+..- .-.+-.+..|+.++..+|+|++++....++
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srt-iP~eEaFDh~------GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRT-IPAEEAFDHD------GFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT-S-TTS---HH------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc-CChHhhcccc------cHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 44444443 44568899999999999987322 2332233222 245566777889999999999988877777
Q ss_pred HHhC-------CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1753 ARQC-------PSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1753 Lel~-------P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
+... .+. .....+.+..|..+...|+.++|+..|+.+-+
T Consensus 82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 6532 221 01122334455555566666666666655543
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.63 Score=38.85 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
++.+||.+|..+|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=88.66 E-value=2.9 Score=42.46 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCC
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF--VRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn--aeA~~~LA~ay~klGd 1846 (1956)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555555556666666666666666666666666555555554443 3344444444444444
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=88.16 E-value=9.1 Score=41.04 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
+.++.|.++..+|+.++|+..|+.+-++
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4466777788888888888888877654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=88.02 E-value=15 Score=48.14 Aligned_cols=185 Identities=15% Similarity=0.111 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHH
Q psy8682 1609 FALGQEKLRQGDLPSAILYLEAAA------KQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--EPKNLEALMAIS 1680 (1956)
Q Consensus 1609 l~LG~aylk~GdydEAIe~fekAL------eldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL--dPdnaeAl~~LA 1680 (1956)
..+|..+.-.|++.+|.++|.+.= ++..+ .-.+.++.-+...|.-++-..+.++-.+- +-+.+. .-|
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAA 710 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAA 710 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHH
Confidence 445666666777777777775431 11110 11233444444444444443333332221 111111 234
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc--hh-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS--KL-TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~--Kl-~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
..+...|+.++|+...- +.. |..+.... ++ ....+.+..++..+.....+.-|.+.|.+.-.
T Consensus 711 EmLiSaGe~~KAi~i~~---------d~g---W~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--- 775 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICG---------DHG---WVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--- 775 (1081)
T ss_pred HHhhcccchhhhhhhhh---------ccc---HHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---
Confidence 45556666666665432 111 22221000 00 11222333444444455555555555544311
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
...+..++...+++.+|....++.-+. -+.+|+-.|.-+....+++||.+.|.+|-
T Consensus 776 --------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 776 --------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred --------HHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 122345566778888887766553222 24578888999999999999998887763
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=88.02 E-value=0.67 Score=34.51 Aligned_cols=31 Identities=35% Similarity=0.509 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
++..+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666666666666666665554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=87.98 E-value=3.1 Score=42.20 Aligned_cols=74 Identities=18% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1624 AILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN--LEALMAISICFTNEACLHDALDTLK 1697 (1956)
Q Consensus 1624 AIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn--aeAl~~LA~aY~~lGdydEALe~le 1697 (1956)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.-+.....|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4566778888888888888888888888888888888888888887654 4555666666666665443333333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.87 E-value=5.8 Score=44.43 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
...+..+..+-...++.+++..++...--+.|.. +.+-..-|.++...|++.+|+..++.+....|..+.+--.++.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~---~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF---PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344455555556666666666666666666666 5666666666666666666666666666666666666666666
Q ss_pred HHHHCCCh
Q psy8682 1806 SLANGNRP 1813 (1956)
Q Consensus 1806 ay~qlGry 1813 (1956)
|+..+|+.
T Consensus 87 CL~~~~D~ 94 (160)
T PF09613_consen 87 CLYALGDP 94 (160)
T ss_pred HHHHcCCh
Confidence 66655554
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=87.68 E-value=5.8 Score=46.42 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNA-------ARQCPS--Q-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekA-------Lel~P~--n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~ 1793 (1956)
..+..++.+|.+|...|+.+.....+++| +..... . .....+.+.+|.+..+.|++++|+.+|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45667788888888888865544444444 433222 1 1224567777888888888888888888877654
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=87.61 E-value=3.2 Score=58.09 Aligned_cols=178 Identities=17% Similarity=0.122 Sum_probs=129.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAIL------YLE-AAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE------- 1669 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe------~fe-kALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd------- 1669 (1956)
++...+..|......|.+.+|.+ ++. ....+.|..+..+..++.++...+++++|+..-.++.-+.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 45667778888888888887777 555 2234578889999999999999999999999888775432
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHH
Q psy8682 1670 -PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL 1748 (1956)
Q Consensus 1670 -PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~ 1748 (1956)
|+....+.+++......++...|+..+.++..+ ..-.... ..|..+....+++.++...++++.|+.+
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l----------~~Ls~ge-~hP~~a~~~~nle~l~~~v~e~d~al~~ 1079 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL----------KLLSSGE-DHPPTALSFINLELLLLGVEEADTALRY 1079 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh----------hccccCC-CCCchhhhhhHHHHHHhhHHHHHHHHHH
Confidence 455667889998888889999999999998876 1111111 1355566667888888899999999999
Q ss_pred HHHHHHhCCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1749 YLNAARQCPSQ-----SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1749 LekALel~P~n-----~~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
++.|+.....- -.....+..+++++..++++..|....+....+
T Consensus 1080 le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1080 LESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 99998864322 112445666677777777777776666655543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.57 E-value=5.5 Score=44.66 Aligned_cols=87 Identities=18% Similarity=0.062 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
-...++.....-...++.+++...+..+--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34577788888888999999999999999999999999999999999999999999999999998899988888889998
Q ss_pred HHcCCHH
Q psy8682 1684 TNEACLH 1690 (1956)
Q Consensus 1684 ~~lGdyd 1690 (1956)
..+|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 8887654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=2.4 Score=53.42 Aligned_cols=132 Identities=13% Similarity=-0.016 Sum_probs=107.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
....|+.-.|-.-+..+++..|.. +......+.++..+|.|+.|...+.-+-..-.....+...+-..+..+|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~---p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQD---PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCC---chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 346789999999999999999988 77888889999999999999998877766555555666667778889999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
|...-.-.+...-+++++..--+....++|-+++|..++++.+.++|....+|.+
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 9998888887666666666666666777888999999999999999875544433
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.41 E-value=21 Score=43.17 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC- 1756 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~- 1756 (1956)
.++.+++..|+|.+|+......+.. ...+-. -+.....+..-..+|....+..++...+..|-...
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~E----------lKk~DD---K~~Li~vhllESKvyh~irnv~KskaSLTaArt~An 196 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHE----------LKKYDD---KINLITVHLLESKVYHEIRNVSKSKASLTAARTLAN 196 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH----------HHhhcC---ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhh
Confidence 4567788888888888877766544 111110 01233444555667777777777766666554332
Q ss_pred ----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH---HHCCChHHHHHHHH--HHH
Q psy8682 1757 ----PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP---DDSRLWNRLGASL---ANGNRPEEAVEAYH--TAL 1824 (1956)
Q Consensus 1757 ----P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P---dnaeA~~nLG~ay---~qlGryeEAie~ye--KAL 1824 (1956)
|.. ..+..-..-|..++.-.+|.-|-.+|-++++-.. .+..+...|-..+ ...++.++-...++ .++
T Consensus 197 s~YCPpq-lqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~ 275 (421)
T COG5159 197 SAYCPPQ-LQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTL 275 (421)
T ss_pred ccCCCHH-HHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhH
Confidence 221 1222333346666777888888888888886432 2333333222111 22333333322221 222
Q ss_pred h-hCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcCC
Q psy8682 1825 Q-LSPGFVRARYNLGITCV--HLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1825 e-L~PdnaeA~~~LA~ay~--klGdyEEAie~yekALeLdPd 1863 (1956)
+ .+....++....+.++. .+.++..|+..|..-+..+|-
T Consensus 276 ~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 276 KHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred hhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 2 23334555555666553 344677777777766655443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=87.29 E-value=76 Score=44.80 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=73.1
Q ss_pred ccccCCCCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHH-HHHHHHhcCCCCCChhh
Q psy8682 1498 ASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSH-WKEMTESLGSGESLPHQ 1576 (1956)
Q Consensus 1498 aslgq~~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~-we~l~kr~~s~~~~a~~ 1576 (1956)
-+.....|++++-+-+.||+|+..+......- +. ..+++...| ++.-. .+.....+ +.
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~--~~~~~~~~~~~~~~-----~~-- 532 (932)
T PRK13184 474 LRVSCLAVPDAFLAEKLYDQALIFYRRIRESF---PG---------RKEGYEAQF--RLGITLLEKASEQG-----DP-- 532 (932)
T ss_pred eeeecccCcHHHHhhHHHHHHHHHHHHHhhcC---CC---------cccchHHHH--HhhHHHHHHHHhcC-----Ch--
Confidence 34456678999999999999999976432111 11 111222222 11211 12211111 11
Q ss_pred hhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q psy8682 1577 WFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEV 1641 (1956)
Q Consensus 1577 WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeA 1641 (1956)
..|.+|+.. |++... .+..|. .|+..|.+|...|+|++-+++|.-|++..|.++..
T Consensus 533 --~~~~~~~~~--~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 533 --RDFTQALSE--FSYLHG-GVGAPL----EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred --HHHHHHHHH--HHHhcC-CCCCch----HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 578888887 665442 445555 89999999999999999999999999999987653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.91 E-value=18 Score=41.20 Aligned_cols=96 Identities=9% Similarity=0.023 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQS-IDPDVQNGLGVLFNLSDEYDKAVDCFRSAL-QVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~-~~a~a~~~LG~ly~~lGdyeEAie~fekAL-el~PdnaeA~~nLG~ay 1807 (1956)
...|.+..+.|+...|...|.++-.-.|.-. ..-.+...-+.++...|-|++-....+..- .-+|-...+.-.||.+-
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa 177 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA 177 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence 3344555555555555555555544332210 001122333344445555554443333211 11222334444555555
Q ss_pred HHCCChHHHHHHHHHHHh
Q psy8682 1808 ANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALe 1825 (1956)
.+.|++..|.+.|.....
T Consensus 178 ~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccchHHHHHHHHHHHc
Confidence 556666666666555443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.73 E-value=3.2 Score=43.79 Aligned_cols=106 Identities=17% Similarity=0.153 Sum_probs=61.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
+|..++..|++-+|+++.+..+...+++......+..-|.++.. .|......+...-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~------------lA~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK------------LAKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH------------HHHhccCchHHHHHHH--------
Confidence 45666777777777777777777766651112334444444432 2222222222222222
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
.|+++|.++..+.|..+..++.||.-+....-|+++..-.+++|.+
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3667777777777777777777777665555666676666666654
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.45 E-value=7.2 Score=50.92 Aligned_cols=127 Identities=19% Similarity=0.110 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNG--LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~--LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
+...-++..+...+.+++.+ +..+.. +...+...+....+...+..++..+|++..+..+||.+....|....+.
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~---~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 45 GLQALAIYALLLGIAINDVN---PELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred CchhHHHHHHHccCccCCCC---HHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 33333555666666666666 444222 4666667777778888888888888888888888888887777666666
Q ss_pred HHHHH-HHhhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1818 EAYHT-ALQLSPGFVRARYNL------GITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1818 e~yeK-ALeL~PdnaeA~~~L------A~ay~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
..+.. +....|++......+ +.....+|+..++.....++..+.|.++.+..
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 55554 777778776655444 77777888888888888888888888765443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.78 E-value=1.2 Score=33.16 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhhCCC
Q psy8682 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764 (1956)
Q Consensus 733 dV~~~La~Ly~~sgeyEkArelFerALkkfP~ 764 (1956)
+++..+|.+|...+++++|..+|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57899999999999999999999999998775
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=85.68 E-value=35 Score=41.99 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=79.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACL 1689 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdy 1689 (1956)
.+-....+..+..+-+.....+++++|..+.++..++.-- ..-..+|.+.+++|++... .-++..+.....|..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQ 262 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccc
Confidence 3334445566677778888889999999888888876532 2345677888888876532 111222212222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q psy8682 1690 HDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGL 1769 (1956)
Q Consensus 1690 dEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~L 1769 (1956)
.+|. .+. +.+ -....-..+|.+..++|+..+|.+.++...+..|-. ....++-++
T Consensus 263 ~da~------~rR----Dtn--------------vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~-t~lniheNL 317 (556)
T KOG3807|consen 263 HEAQ------LRR----DTN--------------VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL-TMLNIHENL 317 (556)
T ss_pred hhhh------hhc----ccc--------------hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH-HHHHHHHHH
Confidence 1111 111 111 112233457788888888888888888887766643 122344445
Q ss_pred HHHHHHcCCHHHH
Q psy8682 1770 GVLFNLSDEYDKA 1782 (1956)
Q Consensus 1770 G~ly~~lGdyeEA 1782 (1956)
-.++..+.-|.+.
T Consensus 318 iEalLE~QAYADv 330 (556)
T KOG3807|consen 318 LEALLELQAYADV 330 (556)
T ss_pred HHHHHHHHHHHHH
Confidence 4554444444333
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.33 E-value=2.7 Score=38.73 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q psy8682 1641 VWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeA 1675 (1956)
.++.+|..+++.|+|.+|..+.+.+++.+|++..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34455555555555555555555555555555444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.88 E-value=2.9 Score=38.53 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGIS 1648 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~a 1648 (1956)
+.+|.+|..+++.|+|++|..+.+.+++..|++..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4678999999999999999999999999999998877665444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.77 E-value=7.2 Score=44.24 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
.++..+|..|...|+.+.|++.|.++... ... .....+..+++..+....+++..+..++.++-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~----~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY----CTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh----cCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46677788888888888888888877665 111 23445566777777777788888777777775
Q ss_pred HhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1754 RQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1754 el~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
...... .........-|..+...++|.+|...|-.++.
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 543221 00112233345555566666666666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=84.27 E-value=2.3 Score=54.34 Aligned_cols=96 Identities=18% Similarity=0.072 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS---DEYDKAVDCFRSALQVRPDDSRLWNRLGAS 1806 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l---GdyeEAie~fekALel~PdnaeA~~nLG~a 1806 (1956)
..-|.-.+..+....|+..|.+++...|.. ...+.+.+.++++. |+.-.|+.....|++++|....+++.|+.+
T Consensus 378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 378 KTEGNDGLYESIVSGAISHYSRAIQYVPDA---IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred HhhccchhhhHHHHHHHHHHHHHhhhccch---hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence 333333334444455555555555555554 44444555444433 233344444445555555555555555555
Q ss_pred HHHCCChHHHHHHHHHHHhhCC
Q psy8682 1807 LANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1807 y~qlGryeEAie~yeKALeL~P 1828 (1956)
+..++++.+|+.+...+....|
T Consensus 455 L~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 455 LNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHhhHHHhhhhHHHHhhcCc
Confidence 5555555555555544444444
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.15 E-value=2.4 Score=48.22 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=78.7
Q ss_pred ccCchhHHHhhhcccccCCCCCCCCCCCCCcccccccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCC
Q psy8682 649 ITGIDPVITIFLSEFFSKPVDTPGQESNPRPSAHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 728 (1956)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~ 728 (1956)
.+|......+..-|. .++.+.........+.+-+..-.|..|.+.+.-... -.+....+...+..++.++..|
T Consensus 70 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~l~~~~~~a~~~l~~~P-- 142 (193)
T PF11846_consen 70 LTDYHTNEQLTRFER-SRPADIELLQIVGNPWLFRERPLFDYYAALLLLARL----PPDPEMLEAYIEWAERLLRRRP-- 142 (193)
T ss_pred HHHHHHHHHHHHhcc-CCccchHHHhcccchhHHhhHhhHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHHHHhCC--
Confidence 344555555544443 244444444555555555555577777776553332 2333456777788888888888
Q ss_pred CCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCC-CHHHHH
Q psy8682 729 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD-FTELLV 770 (1956)
Q Consensus 729 ~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~-d~~IWl 770 (1956)
++.++.+++.++...|+.++|++...++...+|. .+..|.
T Consensus 143 --~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 143 --DPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 6999999999999999999999999999999994 467775
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.70 E-value=6.7 Score=44.48 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
..++..+|..|.+.|++++|++.|.++.+.........+.+..+..+....+++..+..+..++-..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455666677777777777777777666544332123445555666666666666666666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=83.29 E-value=3.3 Score=52.95 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=78.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1776 SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG---NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVE 1852 (1956)
Q Consensus 1776 lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql---GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie 1852 (1956)
.+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....|++++|....+++.|+.++..++++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34556789999999999999999999999998875 566778888888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh
Q psy8682 1853 HFLTALNQQAATH 1865 (1956)
Q Consensus 1853 ~yekALeLdPdn~ 1865 (1956)
+...+....|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 9998888888543
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=82.90 E-value=60 Score=43.18 Aligned_cols=96 Identities=10% Similarity=0.088 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~Pdn------aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
++.+-|.-+++..+|..+++.|...+...|.+ +....+++.||..+.+.+.|.+++++|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34445556667778888888888877766543 345667777888888888888888888888887777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeL 1860 (1956)
.+....|.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 7777777778887777666544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.36 E-value=7.2 Score=49.43 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=91.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1614 aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEAL 1693 (1956)
.....|+...|-.-+..++...|.++......+.++..+|+|+.|...+..+-..-..-..+...+-.....+|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34567999999999999999999999888889999999999999988876655544333345555666677888888888
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
....-++.. .- +..+...-.|.....+|-+++|..+.++.+.++|..
T Consensus 378 s~a~~~l~~----ei---------------e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSN----EI---------------EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhcc----cc---------------CChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 777666654 10 122233333445556788888888888888888765
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.29 E-value=1.7 Score=50.83 Aligned_cols=58 Identities=26% Similarity=0.424 Sum_probs=37.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Q psy8682 1773 FNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1773 y~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn 1830 (1956)
....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455666666666666666666666666666666666666666666666666666654
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=81.76 E-value=7.1 Score=42.67 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQG---DLPSAILYLEAAAK-QEPD-NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMA 1678 (1956)
Q Consensus 1604 daeall~LG~aylk~G---dydEAIe~fekALe-ldPd-naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~ 1678 (1956)
..+..+++|.++.... +..+.+.+++..++ .+|. .-+..++|+..+++.++|++|+.+.+..++..|++..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 5678899999988765 56788999999996 4453 45689999999999999999999999999999999877543
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=81.49 E-value=72 Score=41.94 Aligned_cols=230 Identities=10% Similarity=-0.029 Sum_probs=134.3
Q ss_pred hhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy8682 1594 YTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD--NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1594 lqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPd--naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd 1671 (1956)
....|+++. -.+..|..+...|+.+.|+..++..+...-. ..-.++.+|.++.-+.+|.+|-..+....+...-
T Consensus 260 ~~~~p~ga~----wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW 335 (546)
T KOG3783|consen 260 RKRYPKGAL----WLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW 335 (546)
T ss_pred HHhCCCCcc----HHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Confidence 334455555 6777888888888989999999888761111 1336778899999999999999999988877644
Q ss_pred CHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHhc---CCCCCCCc-------hhhhhhcCcchhhhhHHHHHHH
Q psy8682 1672 NLEALMAIS-ICFT--------NEACLHDALDTLKDKIRP---GQESNPRP-------SAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1672 naeAl~~LA-~aY~--------~lGdydEALe~leKALel---g~e~dPd~-------eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
..-.|..++ -++. ..|+-++|..+++....+ +..+.|-. ..|.......-..-.+..++.+
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El 415 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL 415 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH
Confidence 433443343 2232 123555555444443332 11112220 0010000000000001123334
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHHhCCC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHH
Q psy8682 1733 RSPLSS--REIHQQVLSLYLNAARQCPS--Q-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR---PD----DSRLW 1800 (1956)
Q Consensus 1733 A~ay~~--lGdyeEAle~LekALel~P~--n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~---Pd----naeA~ 1800 (1956)
+..+.. .....+.. -++..++ .|. + ....-.+..+|.++..+|+...|..+|..+++.. .. .|.++
T Consensus 416 ~Y~Wngf~~~s~~~l~-k~~~~~~-~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~ 493 (546)
T KOG3783|consen 416 AYFWNGFSRMSKNELE-KMRAELE-NPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFAL 493 (546)
T ss_pred HHHHhhcccCChhhHH-HHHHHHh-ccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 433332 12222222 1111111 121 1 0123456778999999999999999999988431 12 36899
Q ss_pred HHHHHHHHHCCC-hHHHHHHHHHHHhhCCC
Q psy8682 1801 NRLGASLANGNR-PEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1801 ~nLG~ay~qlGr-yeEAie~yeKALeL~Pd 1829 (1956)
+.+|.+|..+|. ..+|..++.+|-+...+
T Consensus 494 YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 494 YELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 999999999998 99999999999887644
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=81.23 E-value=76 Score=39.27 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=107.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhh
Q psy8682 1644 SLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLT 1723 (1956)
Q Consensus 1644 ~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~ 1723 (1956)
.+-....+..+..+-++....|++++|+.+.++..||.-- .--..+|.+.++++++.+ .
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~----e--------------- 247 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAG----E--------------- 247 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH----H---------------
Confidence 3444445556666778888899999999999988887532 234668888888888761 0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS--RLWN 1801 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna--eA~~ 1801 (1956)
..++..+.....|...+|. .+.+ .+ ....+...++.+..++|+..+|++.++...+-.|-.. .+.-
T Consensus 248 ----~~yr~sqq~qh~~~~~da~------~rRD-tn-vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lnihe 315 (556)
T KOG3807|consen 248 ----TIYRQSQQCQHQSPQHEAQ------LRRD-TN-VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHE 315 (556)
T ss_pred ----HHHhhHHHHhhhccchhhh------hhcc-cc-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 0111112222222222221 1222 22 2344556789999999999999999999887766322 2344
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhh-CCCcHHHHHHHHH-------------HHHHcCC---HHHHHHHHHHHHHhcCCC
Q psy8682 1802 RLGASLANGNRPEEAVEAYHTALQL-SPGFVRARYNLGI-------------TCVHLGA---NTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1802 nLG~ay~qlGryeEAie~yeKALeL-~PdnaeA~~~LA~-------------ay~klGd---yEEAie~yekALeLdPdn 1864 (1956)
+|-.++....-|.+....+-+.-.+ -|..+...+.-+. ...+.|- -..|++...+|++.+|.-
T Consensus 316 NLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHV 395 (556)
T KOG3807|consen 316 NLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHV 395 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCC
Confidence 4544444444443333322222221 1222211111110 1111111 235888999999999997
Q ss_pred hhchhc
Q psy8682 1865 HDGLTP 1870 (1956)
Q Consensus 1865 ~dA~~~ 1870 (1956)
|.-+..
T Consensus 396 PkYLLE 401 (556)
T KOG3807|consen 396 PKYLLE 401 (556)
T ss_pred cHHHHH
Confidence 764443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.13 E-value=36 Score=37.99 Aligned_cols=83 Identities=12% Similarity=-0.012 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay 1807 (1956)
....+...-...++.+++..++...--+.|+. +.+...-|.++...|++.+|+..++....-.+..+...-.++.|+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~---~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNL---KELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---cccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 33444444445677777777777666677776 666666677777777777777777777666666666666666666
Q ss_pred HHCCCh
Q psy8682 1808 ANGNRP 1813 (1956)
Q Consensus 1808 ~qlGry 1813 (1956)
..+|+.
T Consensus 89 ~al~Dp 94 (153)
T TIGR02561 89 NAKGDA 94 (153)
T ss_pred HhcCCh
Confidence 666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=80.69 E-value=15 Score=42.98 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=55.1
Q ss_pred hHHHHHhchhhHhHh---hhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCC------CCHHHHH
Q psy8682 1580 DFSRNQRSSVSMHEY---TFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAA-------AKQEP------DNAEVWL 1643 (1956)
Q Consensus 1580 dYeeALs~s~ydKAl---qL~p~NP~~daeall~LG~aylk~GdydEAIe~fekA-------LeldP------dnaeAl~ 1643 (1956)
.+++|+.. |.-|+ ++....+...+..++.+|..|...|+-+....++++| +.... +....++
T Consensus 92 t~~~ai~~--YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 92 TLEEAIES--YKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CHHHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 44555554 33333 2223344446778889999999999855544444444 43322 1245677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1644 SLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1644 ~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
.+|.+..+.|++++|+..|.+++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 78888888888888888888877654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.56 E-value=26 Score=45.45 Aligned_cols=130 Identities=14% Similarity=0.131 Sum_probs=62.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1613 QEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1613 ~aylk~GdydEAIe~fekALeldPdn-aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
......|+++++..+.+.. ++-|.- ..-...++..+.+.|.++.|+... .+++..+.|| ..+|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHH
Confidence 3344577888877776422 111222 233555566666667666665543 2334444444 35677777
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ 1771 (1956)
|.+..++. .....|..||.....+|+++-|.++|.++ .+ +..|..
T Consensus 337 A~~~a~~~------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-----~d------~~~L~l 381 (443)
T PF04053_consen 337 ALEIAKEL------------------------DDPEKWKQLGDEALRQGNIELAEECYQKA-----KD------FSGLLL 381 (443)
T ss_dssp HHHHCCCC------------------------STHHHHHHHHHHHHHTTBHHHHHHHHHHC-----T-------HHHHHH
T ss_pred HHHHHHhc------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhh-----cC------ccccHH
Confidence 66543211 11224566677777777777777776664 22 344555
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy8682 1772 LFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1772 ly~~lGdyeEAie~fekA 1789 (1956)
+|...|+.+.-.+..+.|
T Consensus 382 Ly~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 382 LYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHCT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 566666655444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=80.33 E-value=10 Score=49.80 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMA 1678 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~ 1678 (1956)
...+.+.|..+++..+|..+++.|...+...|.+ +.....++.||..+.+.+.|.++++.|-+.+|.++-....
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 3467788999999999999999999999877654 4567889999999999999999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1679 ISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1679 LA~aY~~lGdydEALe~leKALel 1702 (1956)
+-.+....+.-++|+.+.......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 888888999999999998887665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1956 | ||||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 2e-70 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 3e-68 | ||
| 4eqf_A | 365 | Trip8b-1a#206-567 Interacting With The Carboxy-Term | 1e-67 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 2e-67 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 2e-67 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 7e-64 | ||
| 3cvq_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (pts1) | 3e-33 | ||
| 3cv0_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (Pts1) | 1e-32 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 6e-09 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 4e-04 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 3e-07 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 4e-07 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 5e-07 | ||
| 1hxi_A | 121 | An Unexpected Extended Conformation For The Third T | 3e-06 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-05 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 5e-05 | ||
| 3asd_A | 200 | Mama R50e Mutant Length = 200 | 3e-04 | ||
| 3as8_A | 186 | Mama Msr-1 P41212 Length = 186 | 4e-04 | ||
| 1xnf_A | 275 | Crystal Structure Of E.Coli Tpr-Protein Nlpi Length | 7e-04 |
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327 | Back alignment and structure |
|
| >pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1HXI|A Chain A, An Unexpected Extended Conformation For The Third Tpr Motif Of The Peroxin Pex5 From Trypanosoma Brucei Length = 121 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3ASD|A Chain A, Mama R50e Mutant Length = 200 | Back alignment and structure |
|
| >pdb|3AS8|A Chain A, Mama Msr-1 P41212 Length = 186 | Back alignment and structure |
|
| >pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi Length = 275 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 280 bits (719), Expect = 2e-84
Identities = 146/339 (43%), Positives = 202/339 (59%), Gaps = 19/339 (5%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALG 1612
W++L + +EM + H W SD+ ++ Y F E+NP+++ F G
Sbjct: 17 WDKLQAELEEMAKRDAEA----HPWLSDYDDLTSATYDK-GYQFEEENPLRDHPQPFEEG 71
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
+L++GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P N
Sbjct: 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLANHTLT 1731
ALMA+++ FTNE+ A + L+D + P + L +
Sbjct: 132 QTALMALAVSFTNESLQRQACEILRDWL----RYTPAYAHLVTPAEEGAGGAGLGP-SKR 186
Query: 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791
L S + +V L+L A R P SIDPDVQ GLGVLFNLS EYDKAVDCF +AL
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245
Query: 1792 VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851
VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+ +AV
Sbjct: 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 305
Query: 1852 EHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
EHFL ALN Q + G MS++IW +LR
Sbjct: 306 EHFLEALNMQRKSRGPRGEGGA-------MSENIWSTLR 337
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 41/96 (42%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 674 ESNPR-PSAHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 732
P + L + L S + +V L+L A R P SIDP
Sbjct: 160 RYTPAYAHLVTPAEEGAGGAGLGP-SKRILGSLLSDSLFLEVKELFLAAVRLDP-TSIDP 217
Query: 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL 768
DVQ GLGVLFNLS EYDKAVDCF +AL VRP+ L
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 19/85 (22%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLEPR 378
G++R+RYNLGI+C++LGA+ +AVEHFL ALN Q + G
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA--------------- 327
Query: 379 AVKEMSDSIWYSLRVVLSVLNRSDL 403
MS++IW +LR+ LS+L +SD
Sbjct: 328 ----MSENIWSTLRLALSMLGQSDA 348
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 27/241 (11%), Positives = 64/241 (26%), Gaps = 62/241 (25%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVW---------------LSLGISLAENEQDPQAIAAL 1662
+ A L + P A + + SL + +
Sbjct: 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF 204
Query: 1663 SKCLSIEPKNL--EALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADA 1717
+ ++P ++ + + + F A+D + P +
Sbjct: 205 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL----SVRPNDYLLWNKLGAT 260
Query: 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFN 1774
L + + ++ ++ Y A + P + LG+
Sbjct: 261 L-ANGNQS-----------------EEAVAAYRRAL------ELQPGYIRSRYNLGISCI 296
Query: 1775 LSDEYDKAVDCFRSALQVRPDD-----------SRLWNRLGASLANGNRPEEAVEAYHTA 1823
+ +AV+ F AL ++ +W+ L +L+ + + A
Sbjct: 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356
Query: 1824 L 1824
L
Sbjct: 357 L 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 275 bits (706), Expect = 9e-83
Identities = 139/344 (40%), Positives = 201/344 (58%), Gaps = 26/344 (7%)
Query: 1549 EPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNA 1608
+ W+++ + W+EM E + S S Y F +NP ++ A
Sbjct: 15 DTEFWDKMQAEWEEMARRNWISE------NQEAQNQVTVSASEKGYYFHTENPFKDWPGA 68
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
F G ++L++GDLP IL++EAA Q+P +AE W LGI+ AENE + AI AL +CL +
Sbjct: 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYK-ADALPSKLTRLA 1726
+P NL+ALMA+++ +TN + DA + LK+ I + NP+ K P R++
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWI----KQNPKYKYLVKNKKGSPGLTRRMS 184
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
+ + V LYL AA Q IDPD+Q GLGVLF+LS E+++A+D F
Sbjct: 185 K-------SPVDSSVLEGVKELYLEAAHQNGDM-IDPDLQTGLGVLFHLSGEFNRAIDAF 236
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
+AL VRP+D LWNRLGA+LANG+R EEAVEAY AL++ PGF+R+RYNLGI+C++LGA
Sbjct: 237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296
Query: 1847 NTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AV +FLTAL+ Q + + +S +IW +LR
Sbjct: 297 YREAVSNFLTALSLQRKSRNQQQVPH------PAISGNIWAALR 334
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 5e-13
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
+ + V LYL AA Q IDPD+Q GLGVLF+LS E+++A+D F +AL VRP+
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE 245
Query: 765 FTEL 768
L
Sbjct: 246 DYSL 249
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 24/88 (27%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQ---AAAHDGLTPHGLEPRADGLTPHGL 375
GF+R+RYNLGI+C++LGA +AV +FLTAL+ Q P
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP--------------- 323
Query: 376 EPRAVKEMSDSIWYSLRVVLSVLNRSDL 403
+S +IW +LR+ LS++++ +L
Sbjct: 324 ------AISGNIWAALRIALSLMDQPEL 345
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 33/248 (13%), Positives = 65/248 (26%), Gaps = 65/248 (26%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA----------IAALSKCLS 1667
A L+ KQ P + + S + ++ +
Sbjct: 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205
Query: 1668 IEPKNL--EALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKL 1722
+ + + + F + A+D + P S + L +
Sbjct: 206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL----TVRPEDYSLWNRLGATL-ANG 260
Query: 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEY 1779
R ++ + Y A I P + LG+ Y
Sbjct: 261 DRS-----------------EEAVEAYTRAL------EIQPGFIRSRYNLGISCINLGAY 297
Query: 1780 DKAVDCFRSALQVRPDD------------SRLWNRLGASLANGNRPEEA-------VEAY 1820
+AV F +AL ++ +W L +L+ ++PE ++
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
Query: 1821 HTALQLSP 1828
A L P
Sbjct: 358 LRAFNLDP 365
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 10/94 (10%), Positives = 25/94 (26%), Gaps = 8/94 (8%)
Query: 1776 SDEYDKAVDCFRSALQVRPDDSRLWNRLGA--------SLANGNRPEEAVEAYHTALQLS 1827
+ E+++A S + W + N + + Y+ +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 1828 PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
+ G+ + G + A+ Q
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 4e-81
Identities = 96/298 (32%), Positives = 158/298 (53%), Gaps = 13/298 (4%)
Query: 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652
+Y F +NP N G L+ +L A L EA + P+ E W SLG++ AEN
Sbjct: 9 DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN 68
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA 1712
E+D AI AL+ ++PK++ A+++ TNE + AL +L+ + S P+
Sbjct: 69 EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL----LSQPQYEQ 124
Query: 1713 YKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVL 1772
+ L + + + + ++ +++ +L A P+ D + LGVL
Sbjct: 125 LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN---DAQLHASLGVL 181
Query: 1773 FNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832
+NLS+ YD A R A+++RPDD++LWN+LGA+LANGNRP+EA++AY+ AL ++PG+VR
Sbjct: 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241
Query: 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
YN+ ++ ++ A + + A+ Q G TP G A +E + S+W R
Sbjct: 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQV---GGTTPTG---EASREATRSMWDFFR 293
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 5e-12
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
++ +++ +L A P+ D + LGVL+NLS+ YD A R A+++RPD
Sbjct: 148 FAAPNEYRECRTLLHAALEMNPN---DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204
Query: 765 FTEL 768
+L
Sbjct: 205 DAQL 208
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 33/256 (12%), Positives = 71/256 (27%), Gaps = 62/256 (24%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVW---------------LSLGISLAENE 1653
AL + + +A+ L A +P ++ S A
Sbjct: 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152
Query: 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSA 1712
+ + L L + P + + ++ + + A L+ + E P
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV----ELRPDDAQL 208
Query: 1713 Y--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQN 1767
+ L + R + + + + L I+P V
Sbjct: 209 WNKLGATL-ANGNRPQ----------EALDAYNRALD-------------INPGYVRVMY 244
Query: 1768 GLGVLFNLSDEYDKAVDCFRSALQVRPDD------------SRLWNRLGASLANGNRPEE 1815
+ V ++ +YD A A+ ++ +W+ L NRP+
Sbjct: 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304
Query: 1816 AVEAYHTALQ-LSPGF 1830
Y ++ + F
Sbjct: 305 VELTYAQNVEPFAKEF 320
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLEPR 378
G+VR YN+ ++ ++ A + + A+ Q G P +
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ--------VGGTTPTGEAS-------- 281
Query: 379 AVKEMSDSIWYSLRVVLSVLNRSDL 403
+E + S+W R++L+V+NR DL
Sbjct: 282 --REATRSMWDFFRMLLNVMNRPDL 304
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 13/81 (16%), Positives = 22/81 (27%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
+ + G S+ EA A+ Q +P A +L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 1838 GITCVHLGANTQAVEHFLTAL 1858
G+T + A+ A
Sbjct: 62 GLTQAENEKDGLAIIALNHAR 82
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-32
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652
+Y F +NP N G L+ +L A L EA ++EP+ E W SLG++ AEN
Sbjct: 5 DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN 64
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709
E+D AI AL+ ++PK++ A+++ TNE + AL +L+ + S P+
Sbjct: 65 EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL----LSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 2e-17
Identities = 18/93 (19%), Positives = 31/93 (33%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
G+ +A F + Q P+ W LG + A + A+ A + A L P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
+ L ++ + A+ L Q
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 6e-11
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 1748 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807
L A Q + + LG+ +++ A+ A + P D + L S
Sbjct: 38 LAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95
Query: 1808 ANGNRPEEAVEAYHTALQLSPGF 1830
N + A+ + L P +
Sbjct: 96 TNEHNANAALASLRAWLLSQPQY 118
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-08
Identities = 13/59 (22%), Positives = 19/59 (32%)
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
G S+ EA A+ Q P A +LG+T + A+ A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-31
Identities = 50/251 (19%), Positives = 91/251 (36%), Gaps = 28/251 (11%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L + + GD +A + +QEPDN V L L + + ++ + + P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
EA + + L +A++ + + P Y A AL +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHAL----RLKPDFIDGYINLAAAL-VAAGDM-- 117
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+ + Y++A + P V++ LG L ++A C+
Sbjct: 118 ---------------EGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYL 159
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
A++ +P+ + W+ LG A+ + A+ L P F+ A NLG
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219
Query: 1848 TQAVEHFLTAL 1858
+AV +L AL
Sbjct: 220 DRAVAAYLRAL 230
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 5e-31
Identities = 53/251 (21%), Positives = 87/251 (34%), Gaps = 28/251 (11%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L + L + + A KQ P AE + +LG E Q +AI L ++P
Sbjct: 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
++ + ++ + A+ + + NP + L L RL
Sbjct: 99 DFIDGYINLAAALVAAGDMEGAVQAYVSAL----QYNPDLYCVRSDLGNLL-KALGRL-- 151
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
++ + YL A P+ + LG +FN E A+ F
Sbjct: 152 ---------------EEAKACYLKAIETQPN---FAVAWSNLGCVFNAQGEIWLAIHHFE 193
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
A+ + P+ + LG L + AV AY AL LSP NL G
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253
Query: 1848 TQAVEHFLTAL 1858
A++ + A+
Sbjct: 254 DLAIDTYRRAI 264
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-28
Identities = 45/252 (17%), Positives = 83/252 (32%), Gaps = 30/252 (11%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG +G L AI + A + +PD + +++L +L A+ A L P
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAY--KADALPSKLTRLA 1726
+ L +A + +P A+ + +
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-----AVAWSNLGCVF-NAQGEI- 185
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
+ + A P+ D LG + + +D+AV +
Sbjct: 186 ----------------WLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAY 226
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
AL + P+ + + L + A++ Y A++L P F A NL G+
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286
Query: 1847 NTQAVEHFLTAL 1858
+A + + TAL
Sbjct: 287 VAEAEDCYNTAL 298
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-28
Identities = 52/254 (20%), Positives = 91/254 (35%), Gaps = 34/254 (13%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L + GD+ A+ +A + PD V LG L + +A A K + +P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
A + F + + A+ + + +P AY + L +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAV----TLDPNFLDAYINLGNVL-KEARIF-- 219
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVD 1784
+ ++ YL A S+ P+ V L ++ D A+D
Sbjct: 220 ---------------DRAVAAYLRAL------SLSPNHAVVHGNLACVYYEQGLIDLAID 258
Query: 1785 CFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844
+R A++++P + L +L EA + Y+TAL+L P + NL
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 1845 GANTQAVEHFLTAL 1858
G +AV + AL
Sbjct: 319 GNIEEAVRLYRKAL 332
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 4e-28
Identities = 48/255 (18%), Positives = 79/255 (30%), Gaps = 36/255 (14%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG G L A A + +P+ A W +LG + AI K ++++P
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAY--KADALPSKLTRLA 1726
L+A + + A+ + P + A + +
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-----AVVHGNLACVY-YEQGLI- 253
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAV 1783
+ Y A + P L +A
Sbjct: 254 ----------------DLAIDTYRRAI------ELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843
DC+ +AL++ P + N L EEAV Y AL++ P F A NL
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 1844 LGANTQAVEHFLTAL 1858
G +A+ H+ A+
Sbjct: 352 QGKLQEALMHYKEAI 366
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 9e-27
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 28/238 (11%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG QG++ AI + E A +P+ + +++LG L E +A+AA + LS+ P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
+ ++ + + + A+DT + I E P P AY A+AL + +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAI----ELQPHFPDAYCNLANAL-KEKGSV-- 287
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+ Y A R CP+ D N L + ++AV +R
Sbjct: 288 ---------------AEAEDCYNTALRLCPT---HADSLNNLANIKREQGNIEEAVRLYR 329
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
AL+V P+ + + L + L + +EA+ Y A+++SP F A N+G T +
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-15
Identities = 18/93 (19%), Positives = 36/93 (38%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
L + +++ A + PD++ + L + R + + A++ +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
A NLG G +A+EH+ AL +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-11
Identities = 24/205 (11%), Positives = 63/205 (30%), Gaps = 63/205 (30%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L QG + AI A + +P + + +L +L E +A + L + P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730
+ ++L ++ + + +A+ Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAV-----------------RLY----------------- 328
Query: 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFR 1787
++ L + P+ + L + + +A+ ++
Sbjct: 329 ------------RKALEV-------------FPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Query: 1788 SALQVRPDDSRLWNRLGASLAN-GN 1811
A+++ P + ++ +G +L +
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-06
Identities = 7/62 (11%), Positives = 11/62 (17%)
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
L E A + P L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 1860 QQ 1861
Q
Sbjct: 62 QN 63
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-28
Identities = 38/247 (15%), Positives = 80/247 (32%), Gaps = 9/247 (3%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
LG++ L G L A+ AA +PDN + + A+ L+K +++
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLAN 1727
+ A + + L +A D K + +SNP +A++ K +
Sbjct: 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL----KSNPSEQEEKEAESQLVKADEMQR 122
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+ ++ C D +++ F E KA+ +
Sbjct: 123 LRSQALD-AFDGADYTAAITFLDKILEVCVW---DAELRELRAECFIKEGEPRKAISDLK 178
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
+A +++ D++ + ++ E ++ L+L R +
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238
Query: 1848 TQAVEHF 1854
A E
Sbjct: 239 ESAEELI 245
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 7e-27
Identities = 36/251 (14%), Positives = 79/251 (31%), Gaps = 22/251 (8%)
Query: 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAAL 1662
+ + D +AI +L+ + +AE+ + + +AI+ L
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177
Query: 1663 SKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSK 1721
++ N EA IS + +L +++ ++ + + K
Sbjct: 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK----LDQDHKRCFAHYKQVKK 233
Query: 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ-------NGLGVLFN 1774
L +L L + S Y + + +P V + F+
Sbjct: 234 LNKLIESAEE----LIRDGRYTDATSKYESVMK------TEPSVAEYTVRSKERICHCFS 283
Query: 1775 LSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
++ +A+ LQ+ PD+ + +EA++ Y A + + + R
Sbjct: 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343
Query: 1835 YNLGITCVHLG 1845
L L
Sbjct: 344 EGLEKAQRLLK 354
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 5e-20
Identities = 39/231 (16%), Positives = 68/231 (29%), Gaps = 27/231 (11%)
Query: 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697
+ E L LG L Q A++ + +P N A + F AL L
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 1698 DKIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL------ 1748
I +A + L K +L + + ++VL
Sbjct: 62 KVI----ALKMDFTAARLQRGHLL-LKQGKLDE----------AEDDFKKVLKSNPSEQE 106
Query: 1749 -YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807
++ + + L F+ +D Y A+ L+V D+ L
Sbjct: 107 EKEAESQLVKADEMQRLRSQAL-DAFDGAD-YTAAITFLDKILEVCVWDAELRELRAECF 164
Query: 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
P +A+ A +L A Y + LG + ++ L
Sbjct: 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-06
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 4/86 (4%)
Query: 1594 YTFA-EDNPMQNETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISL 1649
Y + P E + + + AI + EPDN +
Sbjct: 257 YESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316
Query: 1650 AENEQDPQAIAALSKCLSIEPKNLEA 1675
E +AI + +
Sbjct: 317 LIEEMYDEAIQDYEAAQEHNENDQQI 342
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSL----GISLAENEQDPQ 1657
++ +E +R G A E+ K EP AE + +++E+ +
Sbjct: 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290
Query: 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697
AI S+ L +EP N+ AL + + E +A+ +
Sbjct: 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 16/159 (10%), Positives = 42/159 (26%), Gaps = 18/159 (11%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
++ +S A++ + + + L+ +++ ++ R L++ D
Sbjct: 170 PRKAISDLKAASKLKSD---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFED-----NIRKNRMVISNWIKY--AQWE 823
+ + + Y A + + K
Sbjct: 227 HYKQVKKLNKLIESAEELIRDGRYT----DATSKYESVMKTEPSVAEYTVRSKERICHCF 282
Query: 824 ESQKQVDRARSIYERALDVDHRNITLWLK----YTELEM 858
++ A I L ++ N+ Y EM
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 24/189 (12%)
Query: 674 ESNPR-PSAHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 732
+SNP +A++ K + + ++ C D
Sbjct: 99 KSNPSEQEEKEAESQLVKADEMQRLRSQALD-AFDGADYTAAITFLDKILEVCVW---DA 154
Query: 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE-L 791
+++ F E KA+ ++A +++ D TE + + ++ D + L
Sbjct: 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY------YQLGDHELSL 208
Query: 792 RDYQHRKRKAFE---DN-----IRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843
+ R+ + D+ K ++ I+ A+ + A S YE + +
Sbjct: 209 SEV----RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264
Query: 844 HRNITLWLK 852
++
Sbjct: 265 PSVAEYTVR 273
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-28
Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 40/264 (15%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+L + D +++P +A +L E + + K + +
Sbjct: 26 VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85
Query: 1669 EPKNLEALMAISICFTNEACLHD-ALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLA 1726
P N + A+ + ++ A L A+
Sbjct: 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT----TLEKTYGPAW---------IAYG 132
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAV 1783
+ + H Q ++ Y AA+ + +G+ + L++ A
Sbjct: 133 HS-------FAVESEHDQAMAAYFTAAQ------LMKGCHLPMLYIGLEYGLTNNSKLAE 179
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---------FVRAR 1834
F AL + P+D + + +G + A + + AL+ +
Sbjct: 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239
Query: 1835 YNLGITCVHLGANTQAVEHFLTAL 1858
NLG C L +A+++ AL
Sbjct: 240 NNLGHVCRKLKKYAEALDYHRQAL 263
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 37/246 (15%), Positives = 75/246 (30%), Gaps = 34/246 (13%)
Query: 1620 DLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679
+ PS + E+ +N +V +SL N S + +P + L
Sbjct: 4 NKPSETVIPESVDGL-QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62
Query: 1680 SICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLANHTLTFRSPLSS 1738
++ + + P P ++ A + +
Sbjct: 63 IGTLVELNKANELFYLSHKLV----DLYPSNPVSWFA---------VGC---YYLM---- 102
Query: 1739 REIHQQVLSLYLNAARQCPSQSI--DPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793
+ AR+ S++ + G F + E+D+A+ + +A Q+
Sbjct: 103 -------VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
+G N + A + AL ++P + +G+ G A +
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW 215
Query: 1854 FLTALN 1859
FL AL
Sbjct: 216 FLDALE 221
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 47/251 (18%), Positives = 82/251 (32%), Gaps = 30/251 (11%)
Query: 1609 FALGQEKLRQGDLP-SAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
FA+G L G A YL A E W++ G S A + QA+AA
Sbjct: 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRL 1725
+ ++ I + + A I P +P
Sbjct: 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP---EDPFVMHEVGVVA------- 203
Query: 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP------DVQNGLGVLFNLSDEY 1779
+ +L+A + + + + N LG + +Y
Sbjct: 204 -----------FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 1780 DKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839
+A+D R AL + P ++ ++ +G + E AV+ +HTAL L + LG
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 1840 TCVHLGANTQA 1850
+++A
Sbjct: 313 CIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 51/254 (20%), Positives = 78/254 (30%), Gaps = 36/254 (14%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE-NEQDPQAIAALSKCLSIEPKNLEAL 1676
P N W ++G ++ A LSK ++E A
Sbjct: 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW 128
Query: 1677 MAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734
+A F E+ A+ ++ G P Y N L
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKG---CHLPMLYIGLEY----GLTNNSKL---- 177
Query: 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794
+ Q LS+ P DP V + +GV+ + E+ A F AL+
Sbjct: 178 ---AERFFSQALSI-------APE---DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224
Query: 1795 DDSR---------LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
L N LG + EA++ + AL L P +G +G
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284
Query: 1846 ANTQAVEHFLTALN 1859
AV++F TAL
Sbjct: 285 NFENAVDYFHTALG 298
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 5e-20
Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 13/214 (6%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
A G + + A+ AA+ L +G+ A S+ LSI
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728
P++ + + + A D + + + K + L L L +
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL---LNNLGH- 244
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ + + L + A P + + +G + +L ++ AVD F +
Sbjct: 245 ------VCRKLKKYAEALDYHRQALVLIPQ---NASTYSAIGYIHSLMGNFENAVDYFHT 295
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHT 1822
AL +R DD+ LG + EA
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 7/84 (8%), Positives = 21/84 (25%), Gaps = 1/84 (1%)
Query: 1779 YDKAVD-CFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
Y+K + ++ ++ + L + + ++ P
Sbjct: 3 YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62
Query: 1838 GITCVHLGANTQAVEHFLTALNQQ 1861
T V L + ++
Sbjct: 63 IGTLVELNKANELFYLSHKLVDLY 86
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 20/155 (12%), Positives = 47/155 (30%), Gaps = 25/155 (16%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQV 761
+ H Q ++ Y AA+ + +G+ + L++ A F AL +
Sbjct: 135 FAVESEHDQAMAAYFTAAQ------LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Query: 762 RPDFTELLVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISN----- 815
P+ ++ + + + + + A E V +
Sbjct: 189 APEDPFVMHEVGVVA------FQNGEWKTAEKWF----LDALEKIKAIGNEVTVDKWEPL 238
Query: 816 WIKYAQWEESQKQVDRARSIYERALDVDHRNITLW 850
K+ A + +AL + +N + +
Sbjct: 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY 273
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 5e-27
Identities = 39/257 (15%), Positives = 88/257 (34%), Gaps = 10/257 (3%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
+ GD +AI +L+ + +AE+ + + +AI+ L
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLA 1726
++ N EA IS + +L +++ ++ + + KL +L
Sbjct: 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK----LDQDHKRCFAHYKQVKKLNKLI 261
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS-IDPDVQNGLGVLFNLSDEYDKAVDC 1785
L + S Y + + PS + + + F+ ++ +A+
Sbjct: 262 ESAEE----LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
LQ+ PD+ + +EA++ Y TA + + + R L L
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377
Query: 1846 ANTQAVEHFLTALNQQA 1862
+ + + + + + A
Sbjct: 378 QSQKRDYYKILGVKRNA 394
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 6e-27
Identities = 39/248 (15%), Positives = 81/248 (32%), Gaps = 9/248 (3%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
LG++ L G L A+ AA +PDN + + A+ L+K +
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLA 1726
++ A + + L +A D K + +SNP +A + K +
Sbjct: 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL----KSNPSENEEKEAQSQLIKSDEMQ 144
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
+ S + + ++ C D +++ F E KA+
Sbjct: 145 RLRSQALNAFGSGD-YTAAIAFLDKILEVCVW---DAELRELRAECFIKEGEPRKAISDL 200
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
++A +++ D++ + ++ E ++ L+L R +
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 1847 NTQAVEHF 1854
A E
Sbjct: 261 IESAEELI 268
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 7e-19
Identities = 41/260 (15%), Positives = 73/260 (28%), Gaps = 38/260 (14%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ G + + ++ + E L LG L Q A++ +
Sbjct: 7 HSSGVDLGTENLYFQSM-----------ADVEKHLELGKKLLAAGQLADALSQFHAAVDG 55
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRL 1725
+P N A + F AL L I + +A + L K +L
Sbjct: 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI----QLKMDFTAARLQRGHLL-LKQGKL 110
Query: 1726 ANHTLTFRSPLSSREIHQQVLSL-------YLNAARQCPSQSIDPDVQNGLGVLFNLSDE 1778
+ + ++VL ++ S + L F D
Sbjct: 111 DE----------AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL-NAFGSGD- 158
Query: 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
Y A+ L+V D+ L P +A+ A +L A Y +
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 1839 ITCVHLGANTQAVEHFLTAL 1858
LG + ++ L
Sbjct: 219 TLYYQLGDHELSLSEVRECL 238
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 15/195 (7%), Positives = 54/195 (27%), Gaps = 6/195 (3%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
++ +S A++ + + + L+ +++ ++ R L++ D
Sbjct: 193 PRKAISDLKAASKLKND---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQ---HRKRKAFEDNIRKNRMVISNWIKYAQWEESQK 827
+ + + Y + + + + + +
Sbjct: 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDE 309
Query: 828 QVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKY 887
+ A + L ++ N+ E + + A ++ A Q
Sbjct: 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369
Query: 888 TYMEEMLENVAGKLF 902
+ +L+ + +
Sbjct: 370 EKAQRLLKQSQKRDY 384
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 9/77 (11%), Positives = 17/77 (22%)
Query: 1599 DNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658
+ + + AI + EPDN + E +A
Sbjct: 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 348
Query: 1659 IAALSKCLSIEPKNLEA 1675
I + +
Sbjct: 349 IQDYETAQEHNENDQQI 365
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 29/218 (13%)
Query: 674 ESNPR-PSAHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 732
+SNP +A + K + + S + + ++ C D
Sbjct: 122 KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-YTAAIAFLDKILEVCVW---DA 177
Query: 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQK-------- 784
+++ F E KA+ ++A +++ D TE + + +
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237
Query: 785 -ISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843
D D R + H K+ + K I+ ++ + A S YE + +
Sbjct: 238 LKLDQDHKRCFAHYKQ---VKKLNKLIESAEELIRDGRYTD-------ATSKYESVMKTE 287
Query: 844 HRNITLWLKYTELEMRNR-QVNHARNLWDRAVTILPRA 880
++ A+ +
Sbjct: 288 PSIAEYTVRS----KERICHCFSKDEKPVEAIRVCSEV 321
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 3e-26
Identities = 49/256 (19%), Positives = 84/256 (32%), Gaps = 36/256 (14%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
A G + + AI + A + D + + E + AI+ L+ +
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVEQ 67
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAY--KADALPSKLTRLA 1726
+ IS F + L LK I E + AD L +KL
Sbjct: 68 GREMRADYKVISKSFARIGNAYHKLGDLKKTI----EYYQKSLTEHRTADIL-TKLRNA- 121
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLG-VLFNLSDEYDKA 1782
++ L A ++P+ G F SD + A
Sbjct: 122 ----------------EKELKKAEAEAY------VNPEKAEEARLEGKEYFTKSD-WPNA 158
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842
V + ++ P+D+R ++ A+LA EA+ + A++ P FVRA +
Sbjct: 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218
Query: 1843 HLGANTQAVEHFLTAL 1858
+ A+E A
Sbjct: 219 AVKEYASALETLDAAR 234
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 4e-17
Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 34/228 (14%)
Query: 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDT 1695
A+ + G + Q +AI +K + ++ L + + A+ T
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAIST 60
Query: 1696 LKDKIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752
L D + E + Y + + R+ N L
Sbjct: 61 LNDAV----EQGREMRADYKVISKS----FARIGN--------------AYHKLGDLKKT 98
Query: 1753 ARQCPSQSIDPDVQ--NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810
+ + +K + + V P+ + G
Sbjct: 99 IE------YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152
Query: 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ AV+AY ++ +P R N L + +A+ A+
Sbjct: 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 3/106 (2%)
Query: 1581 FSRNQRSSVSMHEYTFA-EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA 1639
F+R + + + E + + + EA A P+ A
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQ--KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKA 139
Query: 1640 EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685
E G P A+ A ++ + P++ +
Sbjct: 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 185
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 8/75 (10%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
+A + P AI A +++P+ ++ + ++ A+
Sbjct: 169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228
Query: 1661 ALSKCLSIEPKNLEA 1675
L + + +
Sbjct: 229 TLDAARTKDAEVNNG 243
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 7e-26
Identities = 39/256 (15%), Positives = 77/256 (30%), Gaps = 34/256 (13%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ L K D ++ ++++ L +L + +A +K L I
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNP-RPSAYKADALPSKLTRLAN 1727
+P NL+ + D + + +P + + A +
Sbjct: 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLV----DRHPEKAVTWLA---------VGI 381
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSI--DPD---VQNGLGVLFNLSDEYDKA 1782
+ + AR+ S+S DP G F + E+D+A
Sbjct: 382 Y-------YLCVNKISE--------ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842
+ + +A ++ + LG A E ++ L LG+
Sbjct: 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486
Query: 1843 HLGANTQAVEHFLTAL 1858
+ A+ HF AL
Sbjct: 487 NKSDMQTAINHFQNAL 502
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-25
Identities = 35/233 (15%), Positives = 68/233 (29%), Gaps = 19/233 (8%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
A+G L + A Y ++ +P W+ S A + QAI+A + +
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLA 1726
+ + + + A + L+ + +P + +
Sbjct: 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ---YDPLLLNELGVVA-FNKSDMQ 492
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
+ Q L L LG + YD A+D
Sbjct: 493 T----------AINHFQNALLLVKKTQSNEKP---WAATWANLGHAYRKLKMYDAAIDAL 539
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839
L + +D+ + + + P A+ H +L +SP + A L
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-24
Identities = 42/251 (16%), Positives = 81/251 (32%), Gaps = 33/251 (13%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
G+ L + P+ A WL++GI + +A SK +++P+ A +
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411
Query: 1678 AISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735
+ F E A+ ++ G P + +L N
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQG---THLPYLFLGMQH----MQLGNI------- 457
Query: 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV--- 1792
++ DP + N LGV+ + A++ F++AL +
Sbjct: 458 -------LLANEYLQSSYALFQY---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507
Query: 1793 ----RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
+ W LG + + A++A + L LS + + +H
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567
Query: 1849 QAVEHFLTALN 1859
A+ H +L
Sbjct: 568 LAITHLHESLA 578
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-24
Identities = 41/258 (15%), Positives = 76/258 (29%), Gaps = 31/258 (12%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ + + +P N +V+ SL E+ + + + +
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLAN 1727
P+ +A+ I + + +A +P+ A+ A
Sbjct: 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSS----TMDPQFGPAW---------IGFA- 414
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
H+ + H Q +S Y AAR LG+ A + +
Sbjct: 415 HSF------AIEGEHDQAISAYTTAARLFQG---THLPYLFLGMQHMQLGNILLANEYLQ 465
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL-------SPGFVRARYNLGIT 1840
S+ + D L N LG N + + A+ + AL L + NLG
Sbjct: 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525
Query: 1841 CVHLGANTQAVEHFLTAL 1858
L A++ L
Sbjct: 526 YRKLKMYDAAIDALNQGL 543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 5e-13
Identities = 27/260 (10%), Positives = 62/260 (23%), Gaps = 53/260 (20%)
Query: 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAA 1661
+ + A L E L A + G +A
Sbjct: 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222
Query: 1662 LSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK 1721
+ L ++ K EA
Sbjct: 223 YKEALMVDAKCYEAF--------------------------------------------- 237
Query: 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK 1781
+L ++ L L++ E VL L + + + + L + + +
Sbjct: 238 -DQLVSNHL-----LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE--DELR 289
Query: 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841
+ + S++ S L +L +R + + L++ P + +
Sbjct: 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349
Query: 1842 VHLGANTQAVEHFLTALNQQ 1861
G + +++
Sbjct: 350 HESGEKNKLYLISNDLVDRH 369
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 7e-08
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 1597 AEDNPMQNETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653
+ + A LG + +AI L ++A V ++ + +
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564
Query: 1654 QDPQAIAALSKCLSIEPKNLEALMAISICF 1683
AI L + L+I P + A +
Sbjct: 565 IPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 24/198 (12%), Positives = 53/198 (26%), Gaps = 24/198 (12%)
Query: 712 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVY 771
++ Q ++ + G ++ +D+A +C++ AL V E
Sbjct: 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239
Query: 772 LFS------------SLDFQPPKQKISDPDELRDY------QHRKRKAFEDNIRKNRMVI 813
L S L D LR + +
Sbjct: 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299
Query: 814 SN------WIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHAR 867
+ A + + +I + L++D N+ ++ + + + N
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359
Query: 868 NLWDRAVTILPRANQFWY 885
+ + V P W
Sbjct: 360 LISNDLVDRHPEKAVTWL 377
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 41/222 (18%)
Query: 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697
+ + L + E Q+ QA++ + +++ E
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY-------------------YW 43
Query: 1698 DKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757
+ E + + + A A + + Y ++ P
Sbjct: 44 TNVDKNSEISSKLATELALAY------------------KKNRNYDKAYLFYKELLQKAP 85
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN-GNRPEEA 1816
+ + D + + A+ + LQ+ D+ LG + ++
Sbjct: 86 N---NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142
Query: 1817 VEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+E + L ARY G++ + +A +
Sbjct: 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 9e-17
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 7/127 (5%)
Query: 1740 EIHQQVLSLYLNAA------RQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793
+Q ++L ++ + I + L + + + YDKA ++ LQ
Sbjct: 25 SYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ-AVE 1852
P++ + ++A+ Y LQL + A LG + +E
Sbjct: 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144
Query: 1853 HFLTALN 1859
L+
Sbjct: 145 TDYKKLS 151
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 5e-15
Identities = 27/207 (13%), Positives = 56/207 (27%), Gaps = 57/207 (27%)
Query: 1591 MHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLA 1650
M+ +T + N + A L + + A L+ + ++ P+N + +
Sbjct: 40 MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV 99
Query: 1651 ENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD-ALDTLKDKIRPGQESNPR 1709
Q+ A+ K L +E NL A + + + A L+T K+ S +
Sbjct: 100 CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL----SSPTK 155
Query: 1710 PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGL 1769
+
Sbjct: 156 ----------------------------------------------------MQYARYRD 163
Query: 1770 GVLFNLSDEYDKAVDCFRSALQVRPDD 1796
G+ + Y+KA + + + P
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPST 190
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 8e-13
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 18/117 (15%)
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----------------RLWN 1801
QS+D +Q + +AV FR + + D + +L
Sbjct: 1 GQSVDEMLQKVS-AAIEA-GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLAT 58
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L + ++A Y LQ +P V V G A+ + L
Sbjct: 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 24/169 (14%), Positives = 61/169 (36%), Gaps = 16/169 (9%)
Query: 727 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKIS 786
QS+D +Q + +AV FR + + D TE+ Y ++++D
Sbjct: 1 GQSVDEMLQKVS-AAIEA-GQNGQAVSYFRQTIALNIDRTEM--YYWTNVDKNSEISSKL 56
Query: 787 DPDELRDYQHRKR-----KAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALD 841
+ Y+ + +++ ++K + A+ + + Q A +YE+ L
Sbjct: 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116
Query: 842 VDHRNITLWLK----YTELEMRNRQVNHARNLWDRAVTILPRANQFWYK 886
++ N+ + Y + ++ + ++ + Y+
Sbjct: 117 LEADNLAANIFLGNYYYLTAEQEKK---KLETDYKKLSSPTKMQYARYR 162
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 22/177 (12%), Positives = 57/177 (32%), Gaps = 20/177 (11%)
Query: 709 EIHQQVLSLYLNAA------RQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
+Q ++L ++ + I + L + + + YDKA ++ LQ
Sbjct: 25 SYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84
Query: 763 PDFTELLVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQ 821
P+ + L + LR Y+ K + + + + + ++
Sbjct: 85 PNNVDCLEACAEMQ------VCRGQEKDALRMYE----KILQ--LEADNLAANIFLGNY- 131
Query: 822 WEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP 878
+ + +Q + + L + + ++ + ARN + + P
Sbjct: 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-24
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 802 FEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNR 861
E + +N + W E + +D+AR YER + + W Y E E++ +
Sbjct: 2 AEKKLEENPYDLDAWSILI-REAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60
Query: 862 QVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAG 899
+ L+ R + + + + +Y+ E +
Sbjct: 61 NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPS 98
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 2e-12
Identities = 30/205 (14%), Positives = 63/205 (30%), Gaps = 21/205 (10%)
Query: 708 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ + ++Y A +++ + +Y+K + L +
Sbjct: 299 KLFSDEAANIYERAISTLLKKNML--LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 356
Query: 768 LLVYLFSSLDFQPPKQKISDPDELRDYQHRK-RKAFEDNIRKNRMVISNWIKYAQWE-ES 825
L+ + R + R F+ R ++ A E
Sbjct: 357 LVYIQYMKF-------------ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403
Query: 826 QKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP----RAN 881
K A I+E L L Y + + N+ R L++R +T ++
Sbjct: 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463
Query: 882 QFWYKYTYMEEMLENVAGKLFVFHR 906
+ W ++ E + ++A L V R
Sbjct: 464 EIWARFLAFESNIGDLASILKVEKR 488
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 2e-10
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 10/106 (9%)
Query: 799 RKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD----HRNITLWLKYT 854
K FE ++K + + Y + + + R ++ER L ++ +W ++
Sbjct: 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470
Query: 855 ELEMRNRQVNHARNLWDRAVTILPRAN------QFWYKYTYMEEML 894
E + + R T +Y +M+
Sbjct: 471 AFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYP 516
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-09
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 835 IYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEML 894
+ E+ L+ + ++ W E +N+ ++ AR ++R V P + +FW Y E
Sbjct: 1 MAEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA 59
Query: 895 ENVAGKLFVFHR--DSISQVTLWLGALTLSLEGLGS 928
+N +F R + + LW L+ E G
Sbjct: 60 KNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGK 95
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 4e-09
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 9/110 (8%)
Query: 797 RKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTEL 856
+ RK +E + + W Y + E K D+ +++R L +I LW Y
Sbjct: 30 KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM-KVLHIDLWKCYLSY 88
Query: 857 EMRNRQVNHA-----RNLWDRAVT---ILPRANQFWYKYTYMEEMLENVA 898
+ + +D A+ + + Q W Y + +E V
Sbjct: 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVG 138
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 4e-09
Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 16/186 (8%)
Query: 746 DEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDN 805
YDK F+ L YL ++ ++ + D
Sbjct: 60 KNYDKVEKLFQRCLMKVLHIDLWKCYL------SYVRETKGKLPSYKEKMAQAYDFALDK 113
Query: 806 IRKNRMVISNWIKYAQWEES---------QKQVDRARSIYERALDVDHRNI-TLWLKYTE 855
I M W+ Y + + +++ R +Y+R NI LW Y +
Sbjct: 114 IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNK 173
Query: 856 LEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDSISQVTLW 915
E + + DR+ + T M+ + N QV +W
Sbjct: 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233
Query: 916 LGALTL 921
+
Sbjct: 234 KKYIQW 239
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 7e-07
Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 29/195 (14%)
Query: 741 LFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQK----------ISDPDE 790
+ + S +Y A + V + Q +Q S+P
Sbjct: 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246
Query: 791 LRD---YQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQV--------------DRAR 833
D R A+E + W + AQ+ E ++ D A
Sbjct: 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306
Query: 834 SIYERALDVDH-RNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQF-WYKYTYME 891
+IYERA+ +N+ L+ Y + E + ++++R + I + +Y
Sbjct: 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA 366
Query: 892 EMLENVAGKLFVFHR 906
E + +F +
Sbjct: 367 RRAEGIKSGRMIFKK 381
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 3e-04
Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 10/125 (8%)
Query: 718 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLD 777
AR+ V L + + S + A F L+ D E ++ +D
Sbjct: 378 IFKKAREDARTRHHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY---ID 433
Query: 778 FQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYE 837
+ +++ + R R + K+ + W ++ +E + + + +
Sbjct: 434 YL---SHLNEDNNTRVLFERVLTSGSLPPEKSGEI---WARFLAFESNIGDLASILKVEK 487
Query: 838 RALDV 842
R
Sbjct: 488 RRFTA 492
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-24
Identities = 41/289 (14%), Positives = 89/289 (30%), Gaps = 32/289 (11%)
Query: 1600 NPMQNETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
+P Q + A G + AI Y + A + +P+ + ++
Sbjct: 17 SPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLE 76
Query: 1657 QAIAALSKCLSIEPKNLEAL----------------------MAISICFTNEACLHDALD 1694
+ I +K L I+P + +AL ++++ F +
Sbjct: 77 KVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136
Query: 1695 TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS-----PLSSREIHQQVLSLY 1749
L + N + + T LA+ F S +++ + +L
Sbjct: 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196
Query: 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN 1809
+A ++ S + D +L +D Y + +R + + G
Sbjct: 197 SDALQRLYS-ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255
Query: 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
N +A ++ L P + L +T + + + F A+
Sbjct: 256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV 303
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-23
Identities = 36/245 (14%), Positives = 73/245 (29%), Gaps = 29/245 (11%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP--QAIAALSKCLSIEPKNLEA 1675
+ +A L A ++ + + L D ++A + + A
Sbjct: 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA 245
Query: 1676 LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAY--KADALPSKLTRLANHTLTFR 1733
L I + L DA L++ I +P P++Y A L +
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESI----NLHPTPNSYIFLALTL-ADKENS-------- 292
Query: 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793
Q+ + A P P G ++ + +Y A + F+ A +
Sbjct: 293 ---------QEFFKFFQKAVDLNPE---YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
P++ + +L L + E+ ++ P G A++
Sbjct: 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400
Query: 1854 FLTAL 1858
+ A
Sbjct: 401 YDIAK 405
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-21
Identities = 37/278 (13%), Positives = 84/278 (30%), Gaps = 48/278 (17%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
E A A G + +L A + L+ + P ++ L ++LA+ E +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFK 297
Query: 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADA 1717
K + + P+ + +A + + NP Y A
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ----SLNPENVYPYIQLACL 353
Query: 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777
L K + + + + + P+ P+V +
Sbjct: 354 L-YKQGKF-----------------TESEAFFNETKLKFPT---LPEVPTFFAEILTDRG 392
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANG----------------NRPEEAVEAYH 1821
++D A+ + A ++ ++ +G + + A++
Sbjct: 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
A +L P +A+ L + + +A+E F +
Sbjct: 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 2e-19
Identities = 23/238 (9%), Positives = 64/238 (26%), Gaps = 26/238 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L + + + + A P+ + G + A K S+ P
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNP-RPSAY--KADALPSKLTRLAN 1727
+N+ + ++ + ++ + P P A+ L +
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETK----LKFPTLPEVPTFFAEIL-TDRGDFDT 396
Query: 1728 HTLTFRSPLSSREIHQQVLSL-------YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYD 1780
+ + + L ++ ++ Q+ ++++
Sbjct: 397 ----------AIKQYDIAKRLEEVQEKIHVGIG-PLIGKATILARQSSQDPTQLDEEKFN 445
Query: 1781 KAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
A+ A ++ P + L + +EA+E + + L+
Sbjct: 446 AAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-18
Identities = 28/268 (10%), Positives = 66/268 (24%), Gaps = 29/268 (10%)
Query: 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
+E A S + + A GI
Sbjct: 201 QRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260
Query: 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY-- 1713
A L + +++ P + + +++ ++ + + + + NP P Y
Sbjct: 261 DAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAV----DLNPEYPPTYYH 315
Query: 1714 KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF 1773
+ L + + A P + L L
Sbjct: 316 RGQMY-FILQDY-----------------KNAKEDFQKAQSLNPE---NVYPYIQLACLL 354
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833
++ ++ F P + L + + A++ Y A +L +
Sbjct: 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414
Query: 1834 RYNLGITCVHLGANTQAVEHFLTALNQQ 1861
+G + T L+++
Sbjct: 415 HVGIGPLIGKATILARQSSQDPTQLDEE 442
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 6e-16
Identities = 32/234 (13%), Positives = 69/234 (29%), Gaps = 18/234 (7%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
GQ D +A + A P+N ++ L L + + ++ A ++ P
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
E + T+ A+ ++ + + K T LA
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE---VQEKIHVGIGPLI-GKATILARQ 431
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ---NGLGVLFNLSDEYDKAVDC 1785
+ + E + L A +DP + GL L ++ D+A++
Sbjct: 432 SSQDPT-QLDEEKFNAAIKLLTKAC------ELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839
F + + + A + ++ + A + G+
Sbjct: 485 FEDSAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKMELTLARYRAKGM 536
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 4e-15
Identities = 21/136 (15%), Positives = 55/136 (40%), Gaps = 10/136 (7%)
Query: 1760 SIDPDVQ-------NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812
+ P + G F + +++A+ ++ A+++ P++ ++ + A +
Sbjct: 15 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD 74
Query: 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ---QAATHDGLT 1869
E+ +E AL++ P +A LG T A+ A+ + +
Sbjct: 75 LEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134
Query: 1870 PHGLEPRAVKEMSDSI 1885
L +A+K +++++
Sbjct: 135 ERNLNKQAMKVLNENL 150
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 4e-13
Identities = 38/275 (13%), Positives = 72/275 (26%), Gaps = 38/275 (13%)
Query: 1619 GDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
G + + P A + G + +AI + ++P
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALP------------ 1719
IS C+ + L ++ + E P A +A A
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKAL----EIKPDHSKALLRRASANESLGNFTDAMFDL 116
Query: 1720 SKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSI-----DPDVQNGLGVL-- 1772
S L+ + P+ R +++Q + + + + + + + G+
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 1773 ------FNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN--GNRPEEAVEAYHTAL 1824
N S YD A ALQ + + L + + A
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236
Query: 1825 QLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
L A GI A ++N
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 13/83 (15%), Positives = 27/83 (32%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
+ +L + +AI L A + +P + + + L + E+ +AI
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482
Query: 1660 AALSKCLSIEPKNLEALMAISIC 1682
+ E L A +
Sbjct: 483 ELFEDSAILARTMDEKLQATTFA 505
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 35/266 (13%), Positives = 79/266 (29%), Gaps = 38/266 (14%)
Query: 1590 SMHEYTFA-EDNPMQNETN---AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSL 1645
S H + + P + GD A A ++ ++A +++
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63
Query: 1646 GISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQE 1705
L+ + +A+A K L ++ A + + +A D + +
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL----R 119
Query: 1706 SNPR-PSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID 1762
+ + L KL + + L A ++
Sbjct: 120 AGMENGDLFYMLGTVL-VKLEQP-----------------KLALPYLQRAV------ELN 155
Query: 1763 PD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819
+ + G+ D+A+ F + + P + + G + A E+A+E
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
Query: 1820 YHTALQLSPGFVRARYNLGITCVHLG 1845
A+ + P + A + + H
Sbjct: 216 LDKAIDIQPDHMLALHAKKLLGHHHH 241
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 2e-20
Identities = 35/248 (14%), Positives = 82/248 (33%), Gaps = 38/248 (15%)
Query: 1621 LPSAILYLEAAAKQEPDNAEVW----LSLGISLAENEQDPQAIAALSKCLSIEPKNLEAL 1676
+ S+ + ++ P + + +E +A A +K + ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 1677 MAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFR 1733
+ + ++ L AL + E + +AY +
Sbjct: 61 INFANLLSSVNELERALAFYDKAL----ELDSSAATAYYGAGNVY-VVKEMY-------- 107
Query: 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSAL 1790
++ ++ A R + + LG + ++ A+ + A+
Sbjct: 108 ---------KEAKDMFEKALR------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
++ +D+ + G LAN +EA+ + + PG A YN G+T + +A
Sbjct: 153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212
Query: 1851 VEHFLTAL 1858
+E A+
Sbjct: 213 LEMLDKAI 220
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 4e-11
Identities = 29/208 (13%), Positives = 56/208 (26%), Gaps = 34/208 (16%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
+L A+ + + A + + A + G E +A K L
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
+N + + AL L+ + E N A L + L
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAV----ELNENDTEARFQFGMCL-ANEGML-- 175
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVD 1784
+ LS + DP GV + + +KA++
Sbjct: 176 ---------------DEALSQFAAVT------EQDPGHADAFYNAGVTYAYKENREKALE 214
Query: 1785 CFRSALQVRPDDSRLWNRLGASLANGNR 1812
A+ ++PD + + +
Sbjct: 215 MLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 2e-23
Identities = 42/262 (16%), Positives = 78/262 (29%), Gaps = 53/262 (20%)
Query: 1602 MQNETNA-FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
MQ LG + G +A+ E A K+ P + E L + + A+
Sbjct: 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60
Query: 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS 1720
++ P+ L M +S + + + K + AL
Sbjct: 61 NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL--------------EQALSV 106
Query: 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSD 1777
+A R ++P + G+++ L
Sbjct: 107 ----------------------------LKDAER------VNPRYAPLHLQRGLVYALLG 132
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
E DKA + AL + + + L + R +EA+ Y AL+ +P + R
Sbjct: 133 ERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191
Query: 1838 GITCVHLGANTQAVEHFLTALN 1859
+ G +A +
Sbjct: 192 ASALLLKGKAEEAARAAALEHH 213
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 22/99 (22%), Positives = 31/99 (31%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
LGV YD A+ F AL+ P D L + A+E
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
T + +P ++ L V L + E L Q
Sbjct: 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ 102
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 8e-14
Identities = 29/229 (12%), Positives = 58/229 (25%), Gaps = 68/229 (29%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP-----------QAI 1659
L + +L+ G + A+ + + P ++ L + + QA+
Sbjct: 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 1660 AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP 1719
+ L + P+ + + + A +LK + P
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL----ALEDTPEIR------ 154
Query: 1720 SKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY 1779
+ L L+
Sbjct: 155 -----------------------------------------------SALAELYLSMGRL 167
Query: 1780 DKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
D+A+ + AL+ P D L R ++L + EEA A
Sbjct: 168 DEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-23
Identities = 38/273 (13%), Positives = 79/273 (28%), Gaps = 27/273 (9%)
Query: 1594 YTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE-N 1652
Y F D+ + + A +++ Q ++ + +E A+ + G +L
Sbjct: 58 YCF-RDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTP 116
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA 1712
+ P+A LSK + +EP+ +EA + + + + A + +
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL----THCKNKVS 172
Query: 1713 YKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVL 1772
+ ++ L S + A + D LG
Sbjct: 173 LQNLSM-------VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---DGRSWYILGNA 222
Query: 1773 F--------NLSDEYDKAVDCFRSALQV---RPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
+ +A+ + A +V + L EA+E +
Sbjct: 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854
A L P + + L T +E
Sbjct: 283 QAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 6e-13
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN-GNRPEEAVEAYHTALQLSPGFVR 1832
++ +E +K + L +++ G +L + EA A++L P V
Sbjct: 79 DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138
Query: 1833 ARYNLGITCVHLGANTQAVEHFLTAL 1858
A LG G T A F AL
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGAL 164
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 1618 QGDLPSAILYLEAAAK---QEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
A+ A K + N ++ L+ E +A+ S+ +++P E
Sbjct: 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293
Query: 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP 1719
+ L L++ K K +P + + S A P
Sbjct: 294 PQQREQQLLEFLSRLTSLLES-KGKTKPKKLQSMLGSLRPAHLGP 337
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 31/249 (12%), Positives = 68/249 (27%), Gaps = 40/249 (16%)
Query: 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDAL---D 1694
N +V L +N +AI +K + + + ++C+ A A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 1695 TLKDKIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751
T K+ + + + L K + + Y
Sbjct: 62 TYFSKV----NATKAKSADFEYYGKIL-MKKGQD-----------------SLAIQQYQA 99
Query: 1752 AARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808
A D + +G F + A+ ++ D +++ LG +
Sbjct: 100 AV------DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153
Query: 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ---AVEHFLTALNQQAATH 1865
+A ++ L+L P +T+ A ++ + A
Sbjct: 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213
Query: 1866 DGLTPHGLE 1874
+E
Sbjct: 214 AKYKDELIE 222
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 27/272 (9%), Positives = 65/272 (23%), Gaps = 42/272 (15%)
Query: 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS 1663
N+ F + + AI ++ ++ ++ + E + A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 1664 ---KCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADA 1717
++ + A+ + + + + Y
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV----DRDTTRLDMYGQIGSY 117
Query: 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777
+ R + DP V LG + +
Sbjct: 118 F-YNKGN-----------------FPLAIQYMEKQIRPTTT---DPKVFYELGQAYYYNK 156
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLG---ASLANGNRPEEAVEAYHTALQLSPG----- 1829
EY KA F L+++P+ + A+ + A Y +++
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216
Query: 1830 ---FVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ A + +A + L
Sbjct: 217 KDELIEANEYIAYYYTINRDKVKADAAWKNIL 248
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 1e-18
Identities = 28/255 (10%), Positives = 57/255 (22%), Gaps = 48/255 (18%)
Query: 1611 LGQEKLRQGDLPSAILYLEA---AAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
A +E + + G L + QD AI +
Sbjct: 43 RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTR 1724
+ L+ I F N+ A+ ++ +I P + A
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI----RPTTTDPKVFYELGQAY-YYNKE 157
Query: 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ---NGLGVLF---NLSDE 1778
+ S ++ + P++ + +
Sbjct: 158 Y-----------------VKADSSFVKVL------ELKPNIYIGYLWRARANAAQDPDTK 194
Query: 1779 YDKAVDCFRSALQVRPDDSRL--------WNRLGASLANGNRPEEAVEAYHTALQLSPGF 1830
A + ++V + +A A+ L L P
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254
Query: 1831 VRARYNLGITCVHLG 1845
+A L + H
Sbjct: 255 KKAIDGLKMKLEHHH 269
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV--- 1817
++ DV+ ++ Y +A++ F + + ++NR + + A
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
E Y + + + G + G ++ A++ + A+
Sbjct: 61 ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV 101
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 10/117 (8%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
DP V LG + + EY KA F L+++P+ ++ + Q P K
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA-- 198
Query: 791 LRDYQHRKRKAFE----DNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843
Y+ K E + +I A + + +A + ++ L +D
Sbjct: 199 KPYYE----KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 30/250 (12%), Positives = 58/250 (23%), Gaps = 22/250 (8%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ K + + L A P S E + + L + +
Sbjct: 76 ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 135
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728
P+ + A+ + + L L P + A+ S
Sbjct: 136 TPEQVVAIASHDGGKQALETVQALLPVLCQAH----GLTPE----QVVAIASNGG----- 182
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ E Q++L + A P G + + +
Sbjct: 183 ------GKQALETVQRLLPVLCQAHGLTPQ---QVVAIASNGGGKQALETVQRLLPVLCQ 233
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
A + P G + + A L+P V A + L
Sbjct: 234 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQ 293
Query: 1849 QAVEHFLTAL 1858
+ + A
Sbjct: 294 RLLPVLCQAH 303
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 6e-22
Identities = 31/250 (12%), Positives = 60/250 (24%), Gaps = 26/250 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
K + + + L A P+ S G E + + L + + P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ + A+ + + L L + P Q A+ S
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ----------VVAIASNGG----- 250
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ E Q++L + A P + + +
Sbjct: 251 ------GKQALETVQRLLPVLCQAHGLTPQ---QVVAIASNSGGKQALETVQRLLPVLCQ 301
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
A + P G + + A L+P V A + L
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361
Query: 1849 QAVEHFLTAL 1858
+ + A
Sbjct: 362 RLLPVLCQAH 371
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-22
Identities = 34/250 (13%), Positives = 62/250 (24%), Gaps = 26/250 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G K + + L A P S E + + L + + P
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ + A+ + + L L + P Q A+ S
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ----------VVAIASHDG----- 352
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ E Q++L + A P Q G + + +
Sbjct: 353 ------GKQALETVQRLLPVLCQAHGLTPEQV---VAIASNGGGKQALETVQRLLPVLCQ 403
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
A + P+ + + A L+P V A + G L +
Sbjct: 404 AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIV 463
Query: 1849 QAVEHFLTAL 1858
+ AL
Sbjct: 464 AQLSRPDPAL 473
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-22
Identities = 34/249 (13%), Positives = 70/249 (28%), Gaps = 24/249 (9%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G K + + L A P S G E + + L + + P
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL-PSKLTRLANHT 1729
+ + A+ + + AL+T++ + P +A L P ++ +A++
Sbjct: 274 QQVVAIA-------SNSGGKQALETVQRLL---------PVLCQAHGLTPQQVVAIASNG 317
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
+ E Q++L + A P + + + A
Sbjct: 318 GG----KQALETVQRLLPVLCQAHGLTPQ---QVVAIASHDGGKQALETVQRLLPVLCQA 370
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
+ P+ G + + A L+P V A + L +
Sbjct: 371 HGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQR 430
Query: 1850 AVEHFLTAL 1858
+ A
Sbjct: 431 LLPVLCQAH 439
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 4e-20
Identities = 32/256 (12%), Positives = 58/256 (22%), Gaps = 27/256 (10%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQE-----PDNAEVWLSLGISLAENEQDPQAIAAL 1662
L K A+ A P+ S E + + L
Sbjct: 36 GQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVL 95
Query: 1663 SKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKL 1722
+ + P+ + A+ + + L L P + A+ S
Sbjct: 96 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH----GLTPE----QVVAIASHD 147
Query: 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782
+ E Q +L + A P G + +
Sbjct: 148 G-----------GKQALETVQALLPVLCQAHGLTPE---QVVAIASNGGGKQALETVQRL 193
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842
+ A + P G + + A L+P V A + G
Sbjct: 194 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 253
Query: 1843 HLGANTQAVEHFLTAL 1858
L + + A
Sbjct: 254 ALETVQRLLPVLCQAH 269
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 2e-17
Identities = 30/257 (11%), Positives = 62/257 (24%), Gaps = 22/257 (8%)
Query: 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAA 1661
+++ + + + L A + + G A A
Sbjct: 1 LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60
Query: 1662 LSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK 1721
L++ P+ + A+ + + L L P+ + A+ S
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAH----GLTPQ----QVVAIASH 112
Query: 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK 1781
+ E Q++L + A P Q +
Sbjct: 113 DG-----------GKQALETVQRLLPVLCQAHGLTPEQ---VVAIASHDGGKQALETVQA 158
Query: 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841
+ A + P+ G + + A L+P V A + G
Sbjct: 159 LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 218
Query: 1842 VHLGANTQAVEHFLTAL 1858
L + + A
Sbjct: 219 QALETVQRLLPVLCQAH 235
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 4e-16
Identities = 29/234 (12%), Positives = 54/234 (23%), Gaps = 33/234 (14%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
K + + L A P S G E + + L + + P
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ + A+ + + L L + P Q A+ S
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ----------VVAIASNGG----- 386
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDC 1785
+ E Q++L + A + P+ + + +
Sbjct: 387 ------GKQALETVQRLLPVLCQAHG------LTPEQVVAIASHDGGKQALETVQRLLPV 434
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP-GFVRARYNLG 1838
A + P G + AL + A LG
Sbjct: 435 LCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLG 488
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ K + + L A P S G E ++ L+
Sbjct: 416 ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAA 475
Query: 1669 EPKNLEALMAISICFTNEACLHD--ALDTLK 1697
+ L+A+ ACL ALD +K
Sbjct: 476 LTND--HLVAL-------ACLGGRPALDAVK 497
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-22
Identities = 37/271 (13%), Positives = 79/271 (29%), Gaps = 41/271 (15%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
E A + G K + D A ++ A + P ++ + + +A+ +
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYN 291
Query: 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADA 1717
K L ++ N A E +P Y A
Sbjct: 292 YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK----ELDPENIFPYIQLACL 347
Query: 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777
+ + +L+ A R+ P P+V N + +
Sbjct: 348 A-YRENKF-----------------DDCETLFSEAKRKFPE---APEVPNFFAEILTDKN 386
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANG---------NRPEEAVEAYHTALQLSP 1828
++DKA+ + A+++ ++ + + EA A +L P
Sbjct: 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
+A+ L + +A+ F + +
Sbjct: 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 6e-20
Identities = 30/240 (12%), Positives = 64/240 (26%), Gaps = 37/240 (15%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
+ + D Y + A K + +N+ V+ G + QA K ++P
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
+N+ + ++ E D + P P A+ L +
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAK----RKFPEAPEVPNFFAEIL-TDKNDF-- 388
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD---------E 1778
+ L Y A + G+ L +
Sbjct: 389 ---------------DKALKQYDLAIELENK---LDGIYVGIAPLVGKATLLTRNPTVEN 430
Query: 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
+ +A + A ++ P + L +EA+ + + L+ +
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 1e-19
Identities = 32/295 (10%), Positives = 81/295 (27%), Gaps = 39/295 (13%)
Query: 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD 1637
F D + + E Q + + + + + +
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189
Query: 1638 NAEVWLSLGISLAEN------------EQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685
+L E+ + + ++ ++ K +L I
Sbjct: 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 1686 EACLHDALDTLKDKIRPGQESNPRPSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQ 1743
+ A + +K I E PR ++Y A + +
Sbjct: 250 KNDPLGAHEDIKKAI----ELFPRVNSYIYMALIMADR------------------NDST 287
Query: 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803
+ + + A + + + V G + + YD+A F A ++ P++ + +L
Sbjct: 288 EYYNYFDKALKLDSN---NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
Query: 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
N+ ++ + A + P +A++ + A+
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 6e-19
Identities = 27/287 (9%), Positives = 72/287 (25%), Gaps = 39/287 (13%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAA-KQEPDNA--EVWLSLGISLAENEQDPQAIAALSKCLS 1667
G A+ L + + ++A E L ++ + + + +
Sbjct: 79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA 138
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKAD-ALPSKLTRLA 1726
+ ++ + +P + +AD L + L+ L
Sbjct: 139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLY 198
Query: 1727 NHTLTFRSPLSSR-----EIHQQVLSLYLNAARQCPSQ---------------------- 1759
+ + ++ L +
Sbjct: 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258
Query: 1760 ------SIDPDVQ--NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811
+ P V + ++ ++ + + F AL++ ++S ++ G
Sbjct: 259 DIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318
Query: 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
++A + + A +L P + L F A
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK 365
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 2e-18
Identities = 29/253 (11%), Positives = 64/253 (25%), Gaps = 38/253 (15%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
+ K + A GI A + K + + P + + +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYI 274
Query: 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFRS 1734
+++ + + + + + + S Y + L
Sbjct: 275 YMALIMADRNDSTEYYNYFDKAL----KLDSNNSSVYYHRGQMN-FILQNY--------- 320
Query: 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794
Q + A P + L L +++D F A + P
Sbjct: 321 --------DQAGKDFDKAKELDPE---NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369
Query: 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ----- 1849
+ + N L + N ++A++ Y A++L + T+
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429
Query: 1850 ----AVEHFLTAL 1858
A A
Sbjct: 430 NFIEATNLLEKAS 442
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 3e-18
Identities = 39/255 (15%), Positives = 86/255 (33%), Gaps = 9/255 (3%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSK-CLSIE 1669
L + GDL + A + +PD ++V L + + A+ LS L+ +
Sbjct: 45 LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104
Query: 1670 PKN--LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA---YKADALPSKLTR 1724
+ +E ++ ++ + L + + E + +P+ K + LPS T
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV-TS 163
Query: 1725 LANHTLTFRSPLSSREIHQQV-LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAV 1783
+A+ F+ L+ + L + + +++ +
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843
D +++ + G N P A E A++L P + + +
Sbjct: 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMAD 282
Query: 1844 LGANTQAVEHFLTAL 1858
+T+ +F AL
Sbjct: 283 RNDSTEYYNYFDKAL 297
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 5e-14
Identities = 25/220 (11%), Positives = 60/220 (27%), Gaps = 52/220 (23%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
+ N F L R+ A ++ P+ EV L + +A+
Sbjct: 334 DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393
Query: 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS 1720
+ +E K + I+ +A L T+++
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLV-GKATLLTRNPTVEN---------------------- 430
Query: 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYD 1780
+ +L A++ P + GL + ++ D
Sbjct: 431 ---------------------FIEATNLLEKASKLDPR---SEQAKIGLAQMKLQQEDID 466
Query: 1781 KAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY 1820
+A+ F + + + + A + ++ + +
Sbjct: 467 EAITLFEESADLARTMEEKLQAI--TFAEAAKVQQRIRSD 504
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 9/124 (7%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
+ + Y A DP + L + + K V+ AL+++PD S++
Sbjct: 22 YDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLL 77
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGF----VRARYNLGITCVHLGANTQAVEHFLTA 1857
R ++ + +A+ + L L+ F + + + + TA
Sbjct: 78 RRASANEGLGKFADAMFDL-SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136
Query: 1858 LNQQ 1861
Sbjct: 137 TATP 140
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 15/156 (9%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
+L+ A R+ P P+V N + +++DKA+ + A+++ + V
Sbjct: 354 FDDCETLFSEAKRKFPE---APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410
Query: 771 ---YLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQ 826
L + + E + KA + + I AQ + Q
Sbjct: 411 GIAPLVGKATLLTRNPTVENFIEATNLLE----KA----SKLDPRSEQAKIGLAQMKLQQ 462
Query: 827 KQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQ 862
+ +D A +++E + D+ T E Q
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ 498
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 25/172 (14%), Positives = 59/172 (34%), Gaps = 19/172 (11%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
+DP+ L L +++D F A + P+ E+ + L
Sbjct: 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL------TDK 385
Query: 786 SDPDE-LRDYQHRKRKAFE---DNIR--KNRMVISNWIKYAQWEESQKQVDRARSIYERA 839
+D D+ L+ Y A E + + + A ++ E+A
Sbjct: 386 NDFDKALKQYD----LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441
Query: 840 LDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYME 891
+D R+ + +++++ ++ A L++ + + + T+ E
Sbjct: 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVE 1852
+ + G + ++A++ Y+ AL+L V NL V +G + VE
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVE 60
Query: 1853 HFLTALN 1859
AL
Sbjct: 61 MSTKALE 67
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 8e-22
Identities = 40/268 (14%), Positives = 71/268 (26%), Gaps = 29/268 (10%)
Query: 1598 EDNPMQNETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654
+ ++ A G G A A PD EV+ LGI L +
Sbjct: 33 ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92
Query: 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714
A A L ++P A + I A D L + Y+
Sbjct: 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL-------------AFYQ 139
Query: 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID-PDVQNGLGVLF 1773
D P+ R L + + +Q + + + V+ LG +
Sbjct: 140 DD--PNDPFRSLWLYLAEQ-----KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 192
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833
++ + S LG + + A + A+ +
Sbjct: 193 EQ-TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
Query: 1834 RYNLGITCVHLGANTQAVEHFLTALNQQ 1861
+ LG + + +QQ
Sbjct: 252 HRYALLELSLLGQDQDDLAES----DQQ 275
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVR----PDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824
L V + + + + L R + ++L G + A + AL
Sbjct: 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 1825 QLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ P LGI G A E F + L
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 33/268 (12%), Positives = 63/268 (23%), Gaps = 66/268 (24%)
Query: 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
+ + ++E A L ++ L L + A + + A++ G+
Sbjct: 1 SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60
Query: 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKAD 1716
A S+ L+I P E + I T A + A+
Sbjct: 61 LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE-----------------AFD-- 101
Query: 1717 ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLF 1773
VL L DP G+
Sbjct: 102 ---------------------------SVLEL-------------DPTYNYAHLNRGIAL 121
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA---VEAYHTALQLSPGF 1830
A D + Q P+D L + + + + + + + G+
Sbjct: 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW 181
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ LG +
Sbjct: 182 NIVEFYLG-NISEQTLMERLKADATDNT 208
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 92.9 bits (232), Expect = 2e-21
Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 63/227 (27%)
Query: 1636 PDNAEV-WLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALD 1694
D +V + GIS A+ + QA+ L + + +++ + + I + + +
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 1695 TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754
+ + L+
Sbjct: 64 -----------------LLE-----------------------------RSLAD------ 71
Query: 1755 QCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811
PD V LG+ + +YD AV + P + + RLG +L N
Sbjct: 72 -------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124
Query: 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
R +EA++++ AL L P + + + +G + +A+ HF A
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 34/210 (16%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
N + G + G A++ LE + + +V L LGI+ + +
Sbjct: 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGT 62
Query: 1660 AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KAD 1716
L + L+ P N++ + + + A+ L E+NP +
Sbjct: 63 ELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA----EANPINFNVRFRLGV 118
Query: 1717 ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLF 1773
AL L R + + + A + P+ V + +
Sbjct: 119 AL-DNLGRF-----------------DEAIDSFKIAL------GLRPNEGKVHRAIAFSY 154
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803
+++A+ F+ A ++ S +
Sbjct: 155 EQMGRHEEALPHFKKANELDEGASVELALV 184
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 7e-20
Identities = 47/294 (15%), Positives = 81/294 (27%), Gaps = 52/294 (17%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEP--------DNAEVWLSLGISL--AENEQDPQAIA 1660
G L +Y++ ++ E+ G + Q+ +A
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159
Query: 1661 ALSKCLSIEPKNLEAL--MAISICFTNEACLHD-ALDTLKDKIRPGQESNPR-PSAYKAD 1716
K L +PKN E +AI+ + A+D L+ I NP
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI----RLNPDNQYLK--- 212
Query: 1717 ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776
L E + L A + P DV +
Sbjct: 213 ---------VLLALKLHKMREEGEEEGEGEKLVEEALEKAPG---VTDVLRSAAKFYRRK 260
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLG----------------ASLANGNRPE---EAV 1817
DE DKA++ + AL+ P+++ L ++G E AV
Sbjct: 261 DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320
Query: 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871
A + + R L +A +F +++ H
Sbjct: 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 2e-18
Identities = 43/295 (14%), Positives = 93/295 (31%), Gaps = 54/295 (18%)
Query: 1617 RQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE----NEQDPQAIAALSKCLSIEPKN 1672
+AI L A + PDN + + L + L + E++ + + + L P
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYK--ADALPSKLTRLANHT 1729
+ L + + + + A++ LK + E P + +K+ ++ N
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKAL----EYIPNNAYLHCQIGCCYRAKVFQVMN-- 300
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCP-SQSIDPD---VQNGLGVLFNLSDEYDKAVDC 1785
+ +++L L +A + + + V + L L L+D+Y++A
Sbjct: 301 ----LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356
Query: 1786 FRSALQVRPDDS---RLWNRLGASLAN-GNRPEEAVEAYHTALQLS-------------- 1827
F+ L R G ++A+ + ++++
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Query: 1828 ----------PGFVRARYNLGITCVHLGANTQAVEHFLTAL-----NQQAATHDG 1867
A + L QA E L A++ +G
Sbjct: 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 2e-17
Identities = 42/262 (16%), Positives = 83/262 (31%), Gaps = 21/262 (8%)
Query: 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669
L + + D + Y + A + L Q+ A+ L K +
Sbjct: 23 NLMEGENSLDDFEDKVFY-RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 1670 PKN--LEALMAISICFTNEACLHDALDTLKD---KIRPGQESNPRPSAYKADALPSKLTR 1724
+ +A + + + N A ++ + L D + + + S+ P
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG-VLFNLSD--EYDK 1781
L +++ + A + P +P+ +GL + L +
Sbjct: 142 EGWTRLKC-----GGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDNWPPSQN 193
Query: 1782 AVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNL 1837
A+D R A+++ PD+ L L L G E + AL+ +PG +
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA 253
Query: 1838 GITCVHLGANTQAVEHFLTALN 1859
+A+E AL
Sbjct: 254 AKFYRRKDEPDKAIELLKKALE 275
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 4e-13
Identities = 30/247 (12%), Positives = 59/247 (23%), Gaps = 47/247 (19%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE------------------- 1651
+ R+ + AI L+ A + P+NA + +G
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Query: 1652 NEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS 1711
E A+A L K ++ +A + + +
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372
Query: 1712 AYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771
+ R N ++ + IH ++ I+ + +
Sbjct: 373 LH---------LRYGN-FQLYQMKCEDKAIHH-----FIEGV------KINQKSREKEKM 411
Query: 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831
L L DS + L + ++A E L+
Sbjct: 412 KDKLQKIAKMR-------LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464
Query: 1832 RARYNLG 1838
A G
Sbjct: 465 SASSWNG 471
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 6e-10
Identities = 30/209 (14%), Positives = 62/209 (29%), Gaps = 41/209 (19%)
Query: 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAA 1661
+ N G+ KL + + A+ +L+ A + + V L A +Q +A
Sbjct: 298 VMNLRENGMYGKRKLLE-LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356
Query: 1662 LSKCLSIEPKNLEALMAI----SICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKA 1715
K S E + + + C A+ + KI + +
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--------NQKSREK 408
Query: 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL 1775
+ + KL ++A L+ D + + L L L
Sbjct: 409 EKMKDKLQKIAKMRLSKNGA--------------------------DSEALHVLAFLQEL 442
Query: 1776 SDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804
+++ +A + L+ + G
Sbjct: 443 NEKMQQADEDSERGLESGSLIPSASSWNG 471
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 3e-06
Identities = 24/213 (11%), Positives = 60/213 (28%), Gaps = 13/213 (6%)
Query: 694 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVD 753
L E + L A + P DV + DE DKA++
Sbjct: 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG---VTDVLRSAAKFYRRKDEPDKAIE 268
Query: 754 CFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKR------KAFEDNIR 807
+ AL+ P+ L + + + + + + +
Sbjct: 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328
Query: 808 KNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTE----LEMRNRQV 863
N + A Q + A +++ + + L + + +
Sbjct: 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388
Query: 864 NHARNLWDRAVTILPRANQFWYKYTYMEEMLEN 896
+ A + + V I ++ + ++++ +
Sbjct: 389 DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKM 421
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 9e-06
Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 10/187 (5%)
Query: 712 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVY 771
+V + + +S + D + G L ++ ++A CF AL+ +P E
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177
Query: 772 LFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNW-IKYAQWEESQKQVD 830
L + ++ + ++ R+A N N+ + +K + E ++
Sbjct: 178 LAIAS------YRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEG 230
Query: 831 RARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKY--T 888
+ E AL+ + + R + + A L +A+ +P +
Sbjct: 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
Query: 889 YMEEMLE 895
Y ++ +
Sbjct: 291 YRAKVFQ 297
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 95.1 bits (235), Expect = 1e-19
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 6/123 (4%)
Query: 783 QKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV 842
P + D I + I ++K + S KQ + +++ D
Sbjct: 36 STSLRPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR 95
Query: 843 DHRNITLWLKYTELE---MRNRQVNHARNLWDRAVTILPRAN--QFWYKY-TYMEEMLEN 896
+W LE M + R ++ N W Y TY+ + +
Sbjct: 96 FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDI 155
Query: 897 VAG 899
+ G
Sbjct: 156 ITG 158
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 55.8 bits (133), Expect = 1e-07
Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 7/166 (4%)
Query: 748 YDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRK--RKAFEDN 805
+D L + + L + + ++ Q RK F
Sbjct: 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460
Query: 806 IRKNRMV-ISNWIKYAQWE-ESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQV 863
R ++V +++ A E K A + E L + KY + + +
Sbjct: 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE 520
Query: 864 NHARNLWDRAVTILP---RANQFWYKYTYMEEMLENVAGKLFVFHR 906
+ ++L++ ++ + + K + E + ++ + R
Sbjct: 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 55.4 bits (132), Expect = 2e-07
Identities = 11/128 (8%), Positives = 28/128 (21%), Gaps = 8/128 (6%)
Query: 787 DPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQ-------VDRARSIYERA 839
+ + + W+++ +WE K R +Y +A
Sbjct: 276 KRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA 335
Query: 840 LDVDHRNITLWLKYTE-LEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVA 898
+W +N +P + + + E+ +
Sbjct: 336 AQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIP 395
Query: 899 GKLFVFHR 906
Sbjct: 396 EIETTILS 403
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 54.3 bits (129), Expect = 4e-07
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 796 HRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV---DHRNITLWLK 852
K E ++ KY + + + +S++E ++D H ++ K
Sbjct: 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK 546
Query: 853 YTELEMRNRQVNHARNLWDRAVTILPRAN---QFWYKYTYMEEML 894
E + +N R L R P N +F KY ++
Sbjct: 547 VIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLDVNY 591
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 52.7 bits (125), Expect = 9e-07
Identities = 14/125 (11%), Positives = 30/125 (24%), Gaps = 4/125 (3%)
Query: 785 ISDPDELRDYQHRKR--KAFEDNIRKNRMVISNWIKYAQWEESQ-KQVDRARSIYERALD 841
+ EL D H+ R + + W A ++ + +
Sbjct: 313 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372
Query: 842 VDHRNITLWLKYTELEMRNRQVNHARNLWDRAV-TILPRANQFWYKYTYMEEMLENVAGK 900
+ L +E N ++ + I E + + K
Sbjct: 373 CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432
Query: 901 LFVFH 905
L +
Sbjct: 433 LTYVY 437
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 2e-04
Identities = 21/144 (14%), Positives = 51/144 (35%), Gaps = 19/144 (13%)
Query: 745 SDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFED 804
+ L +L ++L ++K + ++ +AF+
Sbjct: 116 ELDAAVIEPVLARCLSKELGNNDLSLWL---SYITYVRKKNDIITGGEEARNIVIQAFQV 172
Query: 805 NIRK--------------NRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNI-TL 849
+ K + +W ++EE Q++V R +Y+ L + ++
Sbjct: 173 VVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE-QQRVQYIRKLYKTLLCQPMDCLESM 231
Query: 850 WLKYTELEMRNRQVNHARNLWDRA 873
W +YT+ E Q+ R++ + +
Sbjct: 232 WQRYTQWEQDVNQLTARRHIGELS 255
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 2e-18
Identities = 19/98 (19%), Positives = 38/98 (38%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
+ LG + ++D A F++ + D+R + LGA + E+A+++Y
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
+ R ++ + LG A F +A
Sbjct: 77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 5e-13
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
++ D GLG Y++A+ + + ++ R
Sbjct: 34 WDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPG 1829
+ A +++A L+
Sbjct: 91 HAAECHLQLGDLDGAESGFYSARALAAA 118
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 4e-11
Identities = 16/89 (17%), Positives = 28/89 (31%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ALG + + G A +A + +A +L LG QA+ + S +
Sbjct: 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLK 1697
+ + C L A
Sbjct: 82 DINEPRFPFHAAECHLQLGDLDGAESGFY 110
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 12/73 (16%), Positives = 22/73 (30%)
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
+ D LG + + ++A + + L R LG LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 1846 ANTQAVEHFLTAL 1858
QA++ +
Sbjct: 67 LYEQALQSYSYGA 79
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 6/73 (8%), Positives = 16/73 (21%), Gaps = 1/73 (1%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
+ + LG + G A+ A + + + A
Sbjct: 48 DH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAE 106
Query: 1660 AALSKCLSIEPKN 1672
+ ++
Sbjct: 107 SGFYSARALAAAQ 119
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 1628 LEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA 1687
L D E +LG + + + A ++ + + + C +
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 1688 CLHDALDTLKD--KIRPGQESNPRPSAYKADAL 1718
AL + + PR + A+
Sbjct: 67 LYEQALQSYSYGALMDIN---EPRFPFHAAECH 96
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 86.7 bits (214), Expect = 2e-18
Identities = 44/276 (15%), Positives = 74/276 (26%), Gaps = 34/276 (12%)
Query: 1598 EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657
+P ++ L + L Q + ++ ++ + LA + +
Sbjct: 27 PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS---APELQAVRMFAEYLASHSRRDA 83
Query: 1658 AIAALSKCLSI--EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715
+A L + +S + N L+ + + + AL TL Q + A
Sbjct: 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH------QGDSLECMAMTV 137
Query: 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV--LF 1773
L KL RL Q Q L
Sbjct: 138 QIL-LKLDRL-----------------DLARKELKKMQDQDED---ATLTQLATAWVSLA 176
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833
++ A F+ L N A R E A AL G
Sbjct: 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236
Query: 1834 RYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869
NL + HLG + +L+ L +H +
Sbjct: 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 1e-07
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 2/120 (1%)
Query: 1596 FAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655
ED + A A L A + A + + +
Sbjct: 159 QDEDATLTQ--LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216
Query: 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715
A L + L + + E L+ + + + + + +++ S+P Y+A
Sbjct: 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 4e-18
Identities = 35/259 (13%), Positives = 69/259 (26%), Gaps = 27/259 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
K + + L A PD S G E + + L + + P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL-PSKLTRLANHT 1729
+ A+ + AL+T++ + P +A L ++ +A++
Sbjct: 563 DQVVAI-------ASNGGGKQALETVQRLL---------PVLCQAHGLTQVQVVAIASNI 606
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
+ E Q++L + A P+Q + + + A
Sbjct: 607 GG----KQALETVQRLLPVLCQAHGLTPAQ---VVAIASHDGGKQALETVQRLLPVLCQA 659
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
+ PD G + + A L+ V A + L +
Sbjct: 660 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719
Query: 1850 AVEHFLTALN---QQAATH 1865
+ A Q
Sbjct: 720 LLPVLCQAHGLTPDQVVAI 738
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 90.1 bits (223), Expect = 6e-18
Identities = 33/250 (13%), Positives = 59/250 (23%), Gaps = 27/250 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
K + + L A P S E + + L + + P
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ A+ + + L L + P Q A+ S
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ----------VVAIASHGG----- 302
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ E Q++L + A P Q + + +
Sbjct: 303 ------GKQALETVQRLLPVLCQAHGLTPDQ---VVAIASHDGGKQALETVQRLLPVLCQ 353
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
A + PD G + + A L+P V A + G L
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQ 412
Query: 1849 QAVEHFLTAL 1858
+ + A
Sbjct: 413 RLLPVLCQAH 422
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 4e-16
Identities = 34/270 (12%), Positives = 65/270 (24%), Gaps = 22/270 (8%)
Query: 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS 1663
++ A A K + + L A PD S E + + L
Sbjct: 394 DQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC 453
Query: 1664 KCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLT 1723
+ + P + A+ + + L L + + A+ S +
Sbjct: 454 QTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGL--------TPDQVVAIASNIG 505
Query: 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAV 1783
+ Q++L + A P Q G + + +
Sbjct: 506 -----------GKQALATVQRLLPVLCQAHGLTPDQ---VVAIASNGGGKQALETVQRLL 551
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843
A + PD G + + A L+ V A +
Sbjct: 552 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQA 611
Query: 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGL 1873
L + + A A + H
Sbjct: 612 LETVQRLLPVLCQAHGLTPAQVVAIASHDG 641
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 1e-15
Identities = 42/286 (14%), Positives = 74/286 (25%), Gaps = 24/286 (8%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ K + + L A PD S G E + + L + +
Sbjct: 332 ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 391
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQES--NPRPSAYKA-----DALP 1719
P + A+ + E + L L + P Q +A LP
Sbjct: 392 TPDQVVAIASNGGKQALET-VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLP 450
Query: 1720 SKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ------NGLGVLF 1773
L + T ++S + +Q L Q+ + +G
Sbjct: 451 V-LCQTHGLTPAQVVAIASHDGGKQALETV-QQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833
L+ + + A + PD G + + A L+P V A
Sbjct: 509 ALAT-VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567
Query: 1834 RYNLGITCVHLGANTQAVEHFLTAL-----NQQAATHDGLTPHGLE 1874
+ G L + + A A + LE
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 2e-15
Identities = 33/270 (12%), Positives = 68/270 (25%), Gaps = 25/270 (9%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G K + + L A PD S E + + L + + P
Sbjct: 300 HGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 359
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL-PSKLTRLANHT 1729
+ A+ + + L L +A L P ++ +A+
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLC----------------QAHGLTPDQVVAIAS-- 401
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
+ E Q++L + A P Q + + +
Sbjct: 402 ---NGGKQALETVQRLLPVLCQAHGLTPDQ---VVAIASHDGGKQALETVQRLLPVLCQT 455
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
+ P ++ + A L+P V A + L +
Sbjct: 456 HGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQR 515
Query: 1850 AVEHFLTALNQQAATHDGLTPHGLEPRAVK 1879
+ A + +G +A++
Sbjct: 516 LLPVLCQAHGLTPDQVVAIASNGGGKQALE 545
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 4e-14
Identities = 32/253 (12%), Positives = 58/253 (22%), Gaps = 29/253 (11%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
+ L A + + G A A L++ P + A+
Sbjct: 137 EALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIA 196
Query: 1678 AISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735
+ + + L L + P Q A+ S
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLTPAQ----------VVAIASHDG-----------G 235
Query: 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795
+ E Q++L + A P Q + + + A + PD
Sbjct: 236 KQALETMQRLLPVLCQAHGLPPDQ---VVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292
Query: 1796 DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFL 1855
G + + A L+P V A + L + +
Sbjct: 293 QVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC 352
Query: 1856 TALN---QQAATH 1865
A Q
Sbjct: 353 QAHGLTPDQVVAI 365
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 6e-14
Identities = 39/261 (14%), Positives = 71/261 (27%), Gaps = 32/261 (12%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G K + + L A S E + + L + + P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL-PSKLTRLANHT 1729
+ A+ + AL+T++ + P +A L P ++ +A++
Sbjct: 631 AQVVAI-------ASHDGGKQALETVQRLL---------PVLCQAHGLTPDQVVAIASNG 674
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
+ E Q++L + A Q + + + A
Sbjct: 675 GG----KQALETVQRLLPVLCQAHGLTQEQ---VVAIASNNGGKQALETVQRLLPVLCQA 727
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
+ PD G + + A L+P V A + Q
Sbjct: 728 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGG-------KQ 780
Query: 1850 AVEHFLTALNQQAATHDGLTP 1870
A+E L H GLT
Sbjct: 781 ALETVQRLLPVLCQDH-GLTL 800
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 4e-12
Identities = 38/262 (14%), Positives = 74/262 (28%), Gaps = 34/262 (12%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
K + + L A P S E + + L + + P
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL-PSKLTRLANHT 1729
+ A+ + AL+T++ + P +A L ++ +A++
Sbjct: 665 DQVVAI-------ASNGGGKQALETVQRLL---------PVLCQAHGLTQEQVVAIASNN 708
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
++ E Q++L + A P Q G + + + A
Sbjct: 709 GGKQA----LETVQRLLPVLCQAHGLTPDQ---VVAIASNGGGKQALETVQRLLPVLCQA 761
Query: 1790 LQVRPDDSR-LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
+ P + + +G A + + L+ V A +
Sbjct: 762 HGLTPAQVVAIASNIGGKQALE-TVQRLLPVLCQDHGLTLAQVVAIAS-------NIGGK 813
Query: 1849 QAVEHFLTALNQQAATHDGLTP 1870
QA+E L H GLT
Sbjct: 814 QALETVQRLLPVLCQAH-GLTQ 834
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-08
Identities = 39/274 (14%), Positives = 78/274 (28%), Gaps = 34/274 (12%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G K + + L A P S E + + L + +
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKAD------------AL 1718
+ AI+ + L L + + + A ++ L
Sbjct: 801 AQVV---AIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLL 857
Query: 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA-ARQCPSQSIDPDVQNGLGVLFNLSD 1777
P L + T ++S +Q L C + D + S+
Sbjct: 858 PV-LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAI-----ASN 911
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ-------LSPGF 1830
+A++ + L V D L ++A+ + ++A+E L L+P
Sbjct: 912 GGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQ 971
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864
V A + G +++ L+ + A
Sbjct: 972 VVAIASNGG-----KQALESIVAQLSRPDPALAA 1000
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 7e-04
Identities = 30/257 (11%), Positives = 58/257 (22%), Gaps = 29/257 (11%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
+ + L S E + + L + + + A+
Sbjct: 782 LETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIA 841
Query: 1678 AISICFTNEACLHDALDTLKDKIR----PGQESNPRPSAYKA-----DALPSKLTRLANH 1728
+ + L L +A LP L +
Sbjct: 842 SNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPV-LCQDHGL 900
Query: 1729 TLTFRSPLSSR------EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782
TL ++S E Q++L + P Q + +
Sbjct: 901 TLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQV---VAIASNSGGKQALETVQRL 957
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL-QLSPGFVRARYNLGITC 1841
+ + P+ G A + + AL L+ + A LG
Sbjct: 958 LPVLCQDHGLTPNQVVAIASNGGKQALES-IVAQLSRPDPALAALTNDHLVALACLG--- 1013
Query: 1842 VHLGANTQAVEHFLTAL 1858
A++ L
Sbjct: 1014 -----GRPAMDAVKKGL 1025
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 5e-18
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 3/130 (2%)
Query: 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQN---GLGVLFNLSDEYDKAVDCFRSAL 1790
+ + I V+ + A +I D+ + F ++A FR
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
+ L A + ++A + Y A L ++ G + L A +A
Sbjct: 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123
Query: 1851 VEHFLTALNQ 1860
E F +
Sbjct: 124 KECFELVIQH 133
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 1e-11
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
++ + + D GL ++ + +++ +A D + A + +D
Sbjct: 52 IEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSP 1828
G P +A E + +Q S
Sbjct: 109 HTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
++ + +G + A ++ + N + + L EQ QA + ++
Sbjct: 40 YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99
Query: 1669 EPKNLEALMAISICF-----TNEA--CLHDALDTLKD 1698
+ + C +A C + D
Sbjct: 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 6/70 (8%), Positives = 13/70 (18%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
L + A A ++ G + +A +
Sbjct: 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 1669 EPKNLEALMA 1678
+ A
Sbjct: 134 SNDEKLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 9/93 (9%), Positives = 24/93 (25%), Gaps = 5/93 (5%)
Query: 1628 LEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA 1687
L+ D + S + +A + N++ +M ++ + +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 1688 CLHDALDTLK--DKIRPGQESNPRPSAYKADAL 1718
A D + + P +
Sbjct: 85 QFQQAADLYAVAFALGKN---DYTPVFHTGQCQ 114
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 29/158 (18%)
Query: 1647 ISLAENEQDPQAI-------AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDK 1699
+++ ENE A+ A L +I ++ + + + F N+ + +A +
Sbjct: 3 LNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFL 62
Query: 1700 IRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759
+ Y + LA +E QQ LY A +
Sbjct: 63 C----IYDFYNVDY--------IMGLAA-------IYQIKEQFQQAADLYAVAFALGKN- 102
Query: 1760 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797
D G KA +CF +Q D+
Sbjct: 103 --DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 6e-18
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL-ANGNRPEE 1815
DP ++ DKA + FR AL ++PD + + N G L NRP E
Sbjct: 36 KSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAE 95
Query: 1816 AVEAYHTALQLS--PGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
++ + AL P A N GI G A + +L
Sbjct: 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823
+++ L + + +Y +A AL+ P + W ++A E++ A
Sbjct: 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA 68
Query: 1824 LQLSPGFVRARYNLGIT-CVHLGANTQAVEHFLTALNQ 1860
L + P N G C L +++ +F AL
Sbjct: 69 LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD 106
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 30/233 (12%), Positives = 64/233 (27%), Gaps = 27/233 (11%)
Query: 1632 AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691
A++ + + L + + QA A++ L +PKN A + + +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60
Query: 1692 ALDTLKD--KIRPGQESNPRPSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLS 1747
A ++ + I+P L +L R + ++
Sbjct: 61 AQESFRQALSIKPD-----SAEINNNYGWFLCGRLNRP-----------------AESMA 98
Query: 1748 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807
+ A P+ G+ ++ A + +L +P + L +
Sbjct: 99 YFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157
Query: 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
+ +A + LG N QA + L
Sbjct: 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 41/242 (16%), Positives = 66/242 (27%), Gaps = 38/242 (15%)
Query: 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
AE + L E +R D A +E A K +P N WL + +
Sbjct: 1 AEKANQVSNIK-TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVND 59
Query: 1657 QAIAALSKCLSIEPKNLEAL--MAISICFTNEACLHDALDTLKDKIRPGQESNPRPS-AY 1713
+A + + LSI+P + E +C +++ + + P P A
Sbjct: 60 KAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALA--DPTYPTPYIAN 116
Query: 1714 --KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNG 1768
K +K + + L + P
Sbjct: 117 LNKGICS-AKQGQFGLAEAYLKRSL-----------------------AAQPQFPPAFKE 152
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
L L+ + A F+ LG +A A AY QL
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA--KALGNAQAAYEYEAQLQA 210
Query: 1829 GF 1830
F
Sbjct: 211 NF 212
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 15/157 (9%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
DP ++ DKA + FR AL ++PD E+ L ++
Sbjct: 36 KSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL-----CGRL 90
Query: 786 SDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDH 844
+ P E + + KA D + + + Q Q A + +R+L
Sbjct: 91 NRPAESMAYF----DKALADPTYPTPYIANLNKGICSAK--QGQFGLAEAYLKRSLAAQP 144
Query: 845 RNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRAN 881
+ + + +M Q+ A + + + +
Sbjct: 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 80.5 bits (200), Expect = 1e-17
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816
+DP LG + +YD+A++ ++ AL++ P + W LG + +EA
Sbjct: 29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88
Query: 1817 VEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+E Y AL+L P A YNLG G +A+E++ AL
Sbjct: 89 IEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 76.7 bits (190), Expect = 2e-16
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823
+ LG + +YD+A++ ++ AL++ P + W LG + +EA+E Y A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 1824 LQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L+L P A YNLG G +A+E++ AL
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 96
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 59.7 bits (146), Expect = 2e-10
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816
+DP LG + +YD+A++ ++ AL++ P + W LG + +EA
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Query: 1817 VEAYHTALQLSP 1828
+E Y AL+L P
Sbjct: 123 IEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 3e-06
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
QGD AI Y + A + +P +AE W +LG + + +AI K L ++P++
Sbjct: 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 3e-06
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
QGD AI Y + A + +P +AE W +LG + + +AI K L ++P++ EA
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 2e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
QGD AI Y + A + +P +AE W +LG + + +AI K L ++P++ EA
Sbjct: 48 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 79.7 bits (198), Expect = 1e-17
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 1760 SIDP----DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815
++DP + LG + +YD+A++ ++ AL++ P+++ W LG + +E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
A+E Y AL+L P A YNLG G +A+E++ AL
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 75.9 bits (188), Expect = 3e-16
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816
+DP+ LG + +YD+A++ ++ AL++ P+++ W LG + +EA
Sbjct: 37 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
Query: 1817 VEAYHTALQLSPGFVRARYNLGITCVHLG 1845
+E Y AL+L P A+ NLG G
Sbjct: 97 IEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 45.8 bits (110), Expect = 1e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
QGD AI Y + A + +P+NAE W +LG + + +AI K L ++P N EA
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 2e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
QGD AI Y + A + +P+NAE W +LG + + +AI K L ++P N EA
Sbjct: 56 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 1780 DKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839
+ + L D+ L LG + A + + A+ AL P + A LG
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 1840 TCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881
T G A + + + L + + VKE+
Sbjct: 62 TLQGQGDRAGARQAWESGLA--------AAQSRGDQQVVKEL 95
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 5e-15
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816
+ D ++ LG + +++D A+ R+AL P S W LG +L A
Sbjct: 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72
Query: 1817 VEAYHTALQLSP--GFVRARYNLGITCVHLGANTQAVEHF 1854
+A+ + L + G + L + L A+EH
Sbjct: 73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLAR-EDALEHH 111
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-11
Identities = 15/70 (21%), Positives = 25/70 (35%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
F LG+ +A+ +L AA +P + W LG +L A A L+
Sbjct: 23 FTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82
Query: 1669 EPKNLEALMA 1678
+ +
Sbjct: 83 AQSRGDQQVV 92
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 1621 LPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
+ + LEA Q DN + +LG + AE+EQ A+ L L +P A
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816
IDP L V+F E A + +R AL ++R+ N G L R EEA
Sbjct: 65 EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124
Query: 1817 VEAYHTALQLS--PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ A Q + P R NLG+ + + QA E+F +L
Sbjct: 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 27/245 (11%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
+G L+ K + + ++ LG+ + QA L K L I+P + +A
Sbjct: 17 RGSHMGDQNPLKTD-KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHA 75
Query: 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS 1737
A+++ F E A + + KA A S+ R+ N+ F L
Sbjct: 76 ALAVVFQTEMEPKLADEEYR----------------KALASDSRNARVLNNYGGF---LY 116
Query: 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQ---NGLGVLFNLSDEYDKAVDCFRSALQVRP 1794
++ +++ L A++ ++ P+ LG++ + +A + F +L++
Sbjct: 117 EQKRYEEAYQRLLEASQD----TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172
Query: 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854
+ + + L A + Y Q R+ A +
Sbjct: 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232
Query: 1855 LTALN 1859
L
Sbjct: 233 LQLKR 237
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 30/229 (13%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG L++G+ A + L A + +P +A+ +L + + A K L+ +
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730
+N L + +A L + + P + L
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ--DTLYPER----SRV----FENLGL--- 149
Query: 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQ--SIDPD---VQNGLGVLFNLSDEYDKAVDC 1785
S ++ + A++ + ++ + V + L EY A
Sbjct: 150 ------VSLQMKK------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
+ Q ++R + A +L PG + +
Sbjct: 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 3/117 (2%)
Query: 1747 SLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803
++ + + LG+ + ++A R AL++ P + L
Sbjct: 18 GSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAAL 77
Query: 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
P+ A E Y AL R N G +A + L A
Sbjct: 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD 134
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 5/114 (4%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVR--PDDSRLWNRLGASLANGNRPE 1814
+ D V N G Y++A A Q P+ SR++ LG +P
Sbjct: 99 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158
Query: 1815 EAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868
+A E + +L+L+ + A +++ L
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 30/161 (18%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
IDP L V+F E A + +R AL +L L +
Sbjct: 65 EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL------YEQ 118
Query: 786 SDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQ-WE------ESQKQVDRARSIYE 837
+E + +A +D + ++ +E K+ +A+ +E
Sbjct: 119 KRYEEAYQRL----LEASQDTLYPE---------RSRVFENLGLVSLQMKKPAQAKEYFE 165
Query: 838 RALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP 878
++L ++ ++ L+ +L + R+ AR +D
Sbjct: 166 KSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 5e-17
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY 1820
+P+ GVL + Y +++D F A+Q+ P++S+ W G +L N R EEAV+ Y
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
Query: 1821 HTALQLSPGFVRAR--YNLGITCVHLGANTQAVEHFLTAL 1858
+ + + ++ E
Sbjct: 64 NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 2e-10
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD--DSRLWNRLGASLANGNRPE 1814
+DP+ G + Y++AVDC+ + V D + +W +L E
Sbjct: 34 QLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKE 93
Query: 1815 EAVEAYHTALQLSPGF 1830
E +L
Sbjct: 94 VEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 8e-08
Identities = 10/65 (15%), Positives = 24/65 (36%)
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
+ + G + E+++ + A+QL P + G +L +AV+
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 1854 FLTAL 1858
+ +
Sbjct: 63 YNYVI 67
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
+ N G + G+ +I E A + +P+ ++ WL G +L E+ +A+
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 1661 ALSKCLSIEP 1670
+ +++
Sbjct: 62 CYNYVINVIE 71
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 5e-04
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
N E + G+ + ++I K + ++P+ +
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 6e-17
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 23/122 (18%)
Query: 808 KNRMVISNWIKYAQWEESQKQV--------DRARSIYERALDVDHRNITLWLKYT----- 854
+ + W KY QWE+S R YE+ L V + +W +
Sbjct: 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ 62
Query: 855 ---------ELEMRNRQVNHARNLWDRAV-TILPRANQFWYKYTYMEEMLENVAGKLFVF 904
++ + A N+++RA+ T+L + ++ Y EE ++
Sbjct: 63 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 122
Query: 905 HR 906
+R
Sbjct: 123 NR 124
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 6e-13
Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 19/205 (9%)
Query: 707 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFT 766
++ + ++Y A ++ + +Y+K + L +
Sbjct: 76 AKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-D 132
Query: 767 ELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWE-ES 825
LVY+ + F ++ R + R+ ++ A E
Sbjct: 133 PTLVYI-QYMKFA---RRAEGIKSGRMIFKKAREDARTRHH-------VYVTAALMEYYC 181
Query: 826 QKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP----RAN 881
K A I+E L L Y + + N+ R L++R +T ++
Sbjct: 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241
Query: 882 QFWYKYTYMEEMLENVAGKLFVFHR 906
+ W ++ E + ++A L V R
Sbjct: 242 EIWARFLAFESNIGDLASILKVEKR 266
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 8e-10
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 19/140 (13%)
Query: 786 SDPDELRD---YQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQ--------------KQ 828
S+P D R A+E + W + AQ+ E
Sbjct: 20 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79
Query: 829 VDRARSIYERALDV-DHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQF-WYK 886
D A +IYERA+ +N+ L+ Y + E + ++++R + I + +
Sbjct: 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 139
Query: 887 YTYMEEMLENVAGKLFVFHR 906
Y E + +F +
Sbjct: 140 YMKFARRAEGIKSGRMIFKK 159
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 1e-08
Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 22/159 (13%)
Query: 746 DEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDN 805
+ F+ A + + V + +++ K D K FE
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVT-AALMEYYCSK----DKS-------VAFKIFELG 195
Query: 806 IRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD----HRNITLWLKYTELEMRNR 861
++K + + Y + + + R ++ER L ++ +W ++ E
Sbjct: 196 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255
Query: 862 QVNHARNLWDRAVTILPRAN------QFWYKYTYMEEML 894
+ + R T +Y +M+
Sbjct: 256 DLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYP 294
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 13/143 (9%)
Query: 718 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL-LVYLFSSL 776
AR+ V L + + S + A F L+ D E L Y+
Sbjct: 156 IFKKAREDARTRHHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI---- 210
Query: 777 DFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIY 836
D+ +++ + R R + K+ + W ++ +E + + +
Sbjct: 211 DYL---SHLNEDNNTRVLFERVLTSGSLPPEKSGEI---WARFLAFESNIGDLASILKVE 264
Query: 837 ERALDVDHRNITLWLKYTELEMR 859
+R R + L R
Sbjct: 265 KRRFTA-FREEYEGKETALLVDR 286
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 2e-16
Identities = 21/117 (17%), Positives = 27/117 (23%), Gaps = 3/117 (2%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
+ L A R P D L + + L + P
Sbjct: 5 GPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
RLG R EA A +P LG G A + A
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 4e-13
Identities = 17/84 (20%), Positives = 28/84 (33%)
Query: 1775 LSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
++ + + + R+A++ RP D W L + A L L PG A
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 1835 YNLGITCVHLGANTQAVEHFLTAL 1858
LG + +A A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQAS 84
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 5e-13
Identities = 22/126 (17%), Positives = 33/126 (26%), Gaps = 3/126 (2%)
Query: 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805
P P+ LG + + +A + A P+ + LG
Sbjct: 43 EMAVQRGLALHPG---HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH 99
Query: 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865
+L + + E A AY A QL P L L A
Sbjct: 100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159
Query: 1866 DGLTPH 1871
+ P
Sbjct: 160 GAVEPF 165
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 8e-09
Identities = 24/204 (11%), Positives = 50/204 (24%), Gaps = 56/204 (27%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
D P +L L AA + P + WL L + A+ + L++ P + EA+
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS 1737
+ + +A L+ A
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQ------------------QAS------------------- 84
Query: 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797
+ + + L + + + A + A Q+ P++
Sbjct: 85 --DAAPEHPGIALWLGH-----------------ALEDAGQAEAAAAAYTRAHQLLPEEP 125
Query: 1798 RLWNRLGASLANGNRPEEAVEAYH 1821
+ +L
Sbjct: 126 YITAQLLNWRRRLCDWRALDVLSA 149
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-08
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG+ + Q A + L+ A+ P++ + L LG +L + Q A AA ++ + P
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNP 1708
+ + C ALD L ++R
Sbjct: 123 EEPYITAQLLNWR-RRLCDWRALDVLSAQVRAAVAQGV 159
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
L +L GD + + ++ P + E LG ++ +A L +
Sbjct: 27 LMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA 86
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQ 1704
P++ + + + A ++ P +
Sbjct: 87 APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 18/170 (10%), Positives = 35/170 (20%), Gaps = 16/170 (9%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
+ L A R P D L + + L + P E +
Sbjct: 5 GPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVD 830
L + + + + E Q +
Sbjct: 62 RL------------GRVRWTQQRHAEAAV-LLQQASDAAPEHPGIALWLGHALEDAGQAE 108
Query: 831 RARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA 880
A + Y RA + + + R L + + +
Sbjct: 109 AAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 8/76 (10%), Positives = 19/76 (25%)
Query: 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871
+ A++ P A L + +G T L + +
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 1872 GLEPRAVKEMSDSIWY 1887
G + +++
Sbjct: 64 GRVRWTQQRHAEAAVL 79
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 21/179 (11%), Positives = 55/179 (30%), Gaps = 19/179 (10%)
Query: 744 LSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFE 803
++ + + + R+A++ RP + L + + D A +
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAE------LGMGDTTA-------GEMAVQ 47
Query: 804 DNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQV 863
+ + + + +Q++ A + ++A D + + L Q
Sbjct: 48 RGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA 107
Query: 864 NHARNLWDRAVTILPRANQ------FWYKYTYMEEMLENVAGKLFVFHRDSISQVTLWL 916
A + RA +LP W + L+ ++ ++ + V +
Sbjct: 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFA 166
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-04
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
H + L A+ P P + LG + + + A + A Q+ P+ +
Sbjct: 73 HAEAAVLLQQASDAAPE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNI 806
L + +++ D L + R A +
Sbjct: 130 QLLNWR------RRLCDWRALDVLSAQVRAAVAQGV 159
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 74.7 bits (185), Expect = 2e-16
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 1760 SIDP----DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815
++DP + LG + +YD+A++ ++ AL++ P+++ W LG + +E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
A+E Y AL+L P A+ NLG G
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 53.6 bits (130), Expect = 9e-09
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
+ + W LG + +EA+E Y AL+L P A YNLG G +A+E+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 1854 FLTAL 1858
+ AL
Sbjct: 66 YQKAL 70
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 44.3 bits (106), Expect = 1e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
QGD AI Y + A + +P+NAE W +LG + + +AI K L ++P N EA
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 9e-16
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 1778 EYDKAVDCFRSALQV---RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
+AV + A+ D + + LG++ +A ++ P R
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 1835 YNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
+ +LG Q VE L + + +
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 6e-12
Identities = 19/87 (21%), Positives = 28/87 (32%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
Q + Y A + GLG F EY KA + ++ P+ L
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSP 1828
L N R E+ VE + +
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETS 92
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 5e-06
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 8/109 (7%)
Query: 1618 QGDLPSAILYLEAA---AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
G A+ Y E A Q D AE +L LG + + +A A L+ + P +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS-----AYKADAL 1718
+ ++ N ++ L I + S + AD L
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
LG G+ A L KQ P++ + + + L + Q + L K ++
Sbjct: 31 LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90
Query: 1669 EPKN 1672
+
Sbjct: 91 TSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 9e-05
Identities = 14/62 (22%), Positives = 21/62 (33%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
Q + Y A + GLG F EY KA + ++ P+ L V
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 771 YL 772
+
Sbjct: 66 FY 67
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-15
Identities = 17/98 (17%), Positives = 32/98 (32%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
+ L S Y+ A F++ + DSR + LGA + + A+ +Y
Sbjct: 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
+ R ++ + G +A A
Sbjct: 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 2e-11
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 3/83 (3%)
Query: 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805
++ D GLG +YD A+ + + + R
Sbjct: 41 HXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97
Query: 1806 SLANGNRPEEAVEAYHTALQLSP 1828
L EA A +L
Sbjct: 98 CLLQXGELAEAESGLFLAQELIA 120
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 7e-11
Identities = 15/89 (16%), Positives = 29/89 (32%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
++L + + G A +A + ++ +L LG Q AI + S +
Sbjct: 25 YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLK 1697
+ + C L +A L
Sbjct: 85 DIXEPRFPFHAAECLLQXGELAEAESGLF 113
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 4e-09
Identities = 10/81 (12%), Positives = 18/81 (22%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
++ D L + E+A + L R L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 1838 GITCVHLGANTQAVEHFLTAL 1858
G +G A+ +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGA 82
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 7e-08
Identities = 20/201 (9%), Positives = 41/201 (20%), Gaps = 59/201 (29%)
Query: 1619 GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMA 1678
G L S + + D E SL + ++ A ++ + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 1679 ISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738
+ C A+ +Y
Sbjct: 61 LGACRQAMGQYDLAIH-----------------SY------------------------- 78
Query: 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV---RPD 1795
+ +P E +A A ++ P+
Sbjct: 79 ----SYGAVM----------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124
Query: 1796 DSRLWNRLGASLANGNRPEEA 1816
L R+ + L +E
Sbjct: 125 FXELSTRVSSMLEAIKLKKEM 145
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 2e-15
Identities = 28/126 (22%), Positives = 54/126 (42%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
D N L + ++AV +R AL+V P+ + + L + L + +EA+ Y
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881
A+++SP F A N+G T + A++ + A+ A D + + +
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Query: 1882 SDSIWY 1887
++I
Sbjct: 128 PEAIAS 133
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 2e-14
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
++ + LY A P + L + + +A+ ++ A+++ P + ++
Sbjct: 25 IEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+G +L + A++ Y A+Q++P F A NL G +A+ + TAL
Sbjct: 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 4e-13
Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 3/184 (1%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
Q+ L Y A R P+ D + +G + A+ C+ A+Q+ P + +
Sbjct: 59 LQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
L + + EA+ +Y TAL+L P F A NL + T E ++
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175
Query: 1862 AATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEWDQEKSRAHDCS 1921
A + + P S + L IN+ +
Sbjct: 176 ADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSD 235
Query: 1922 DDDD 1925
Sbjct: 236 GRLR 239
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 65.2 bits (158), Expect = 1e-10
Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 22/204 (10%)
Query: 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDT 1695
P +A+ +L E +A+ K L + P+ A ++ + L +AL
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 1696 LKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755
K+ IR +P + + N L + Q L Y A +
Sbjct: 66 YKEAIR----ISPT--------FADAYSNMGNT-------LKEMQDVQGALQCYTRAIQI 106
Query: 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815
P+ D + L + S +A+ +R+AL+++PD + L L +
Sbjct: 107 NPA---FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163
Query: 1816 AVEAYHTALQLSPGFVRARYNLGI 1839
E + + + +
Sbjct: 164 YDERMKKLVSIVADQLEKNRLPSV 187
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 4e-09
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
P + N L EEAV Y AL++ P F A NL G +A+ H
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 1854 FLTAL 1858
+ A+
Sbjct: 66 YKEAI 70
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 6e-09
Identities = 46/334 (13%), Positives = 93/334 (27%), Gaps = 38/334 (11%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
L K QG++ A+ A + P+ A +L L + + +A+ + + I
Sbjct: 13 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLA 1726
P +A + + AL +I P ADA + LA
Sbjct: 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----------ADA----HSNLA 118
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
+ + ++ Y A + P PD L + ++ +
Sbjct: 119 S-------IHKDSGNIPEAIASYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYDERM 168
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
+ + + D NRL + + + + A + R+
Sbjct: 169 KKLVSIVADQLE-KNRLPSVHPHHSMLYPLSHGFRKA-------IAERHGNLCLDKINVL 220
Query: 1847 NTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLT 1906
+ EH G + S+ G H P ++ L+
Sbjct: 221 HKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHL----MQSIPGMHNPDKFEVFCYALS 276
Query: 1907 QPEWDQEKSRAHDCSDDDDDPSGYQPCTKLHNLS 1940
+ + + ++ D S K +
Sbjct: 277 PDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRI 310
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 2e-04
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 16/170 (9%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
++ + LY A P + L + + +A+ ++ A+++ P F +
Sbjct: 25 IEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVD 830
+ ++L E++D Q + + I+ N A + +
Sbjct: 82 NMGNTL------------KEMQDVQGAL-QCYTRAIQINPAFADAHSNLASIHKDSGNIP 128
Query: 831 RARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA 880
A + Y AL + + + V+I+
Sbjct: 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 2e-15
Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)
Query: 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795
+S++ + L + R P + + LG + ++Y ++ +R ALQ+R +
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE 76
Query: 1796 DSRLWNRLGASL---ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVE 1852
++ L+ L L A+ + + AL L + A L QA+E
Sbjct: 77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136
Query: 1853 HFLTALNQ 1860
+ ++
Sbjct: 137 LWQKVMDL 144
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 23/185 (12%), Positives = 49/185 (26%), Gaps = 53/185 (28%)
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
+ Q + + + L+ + P N+E W LG ++ A + L + +N
Sbjct: 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732
E A L L + Q
Sbjct: 78 AELY----------AALATVLYYQASQHMTAQ---------------------------- 99
Query: 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792
+R + + L+L S + L + Y +A++ ++ + +
Sbjct: 100 -----TRAMIDKALAL----------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144
Query: 1793 RPDDS 1797
Sbjct: 145 NSPRI 149
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 6e-08
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 1598 EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISL---AENEQ 1654
NP QN LG+ L Q D +++L A + +NAE++ +L L A
Sbjct: 38 RANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96
Query: 1655 DPQAIAALSKCLSIEPKNLEALM 1677
Q A + K L+++ + ALM
Sbjct: 97 TAQTRAMIDKALALDSNEITALM 119
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 10/80 (12%), Positives = 20/80 (25%), Gaps = 3/80 (3%)
Query: 1603 QNETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
+N AL Q ++ A + + + L QAI
Sbjct: 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135
Query: 1660 AALSKCLSIEPKNLEALMAI 1679
K + + + +
Sbjct: 136 ELWQKVMDLNSPRINRTQLV 155
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 9e-06
Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 1749 YLNAARQCPSQSIDPDVQNGLG-VLFNLSDEY--DKAVDCFRSALQVRPDDSRLWNRLGA 1805
Y A + + ++ L VL+ + ++ + AL + ++ L +
Sbjct: 67 YRQALQLRGE---NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123
Query: 1806 SLANGNRPEEAVEAYHTALQLSP 1828
+A+E + + L+
Sbjct: 124 DAFMQANYAQAIELWQKVMDLNS 146
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 47/174 (27%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
+S++ + L + R P + + LG + ++Y ++ +R ALQ+R +
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE 76
Query: 765 FTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEE 824
EL L + L +Q
Sbjct: 77 NAELYAALATVLYYQ--------------------------------------------A 92
Query: 825 SQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP 878
SQ + R++ ++AL +D IT + A LW + + +
Sbjct: 93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 1e-13
Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 802 FEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMR-N 860
E+ + S +++A+ K S++ R L N+ LW+ Y E + +
Sbjct: 3 AEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLK-KSYNLDLWMLYIEYVRKVS 61
Query: 861 RQVNHARNLWDRAVTILP---RANQFWYKYTYMEEMLENVAGKLF----VFHR 906
++ +++ + + + +Y E +E+ ++ + R
Sbjct: 62 QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMR 114
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 7e-11
Identities = 20/197 (10%), Positives = 53/197 (26%), Gaps = 17/197 (8%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
++ + + G++ + Y + +
Sbjct: 229 KEKAKKVVERGIEMSDG----MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKE 284
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWE-ESQKQV 829
++ K + R K F + + + +I A E +
Sbjct: 285 LDLLRINHLNYVLKKRGLELFR-------KLFIE-LGNEGVGPHVFIYCAFIEYYATGSR 336
Query: 830 DRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTY 889
+I+ L + L ++ +R +AR L+ R + ++ W
Sbjct: 337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIE 392
Query: 890 MEEMLENVAGKLFVFHR 906
E M+ ++ + +
Sbjct: 393 YEFMVGSMELFRELVDQ 409
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 8e-10
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 9/155 (5%)
Query: 747 EYDKAVDCFRSALQVRPDFTELL--VYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFED 804
+K + + ALQ L + L+ K D L +Q ++ +
Sbjct: 104 RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQI 163
Query: 805 NIRKNRMVISNWIKYAQWEESQKQ-------VDRARSIYERALDVDHRNITLWLKYTELE 857
+ N + E R I+ LD + ++ Y+E
Sbjct: 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYL 223
Query: 858 MRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEE 892
+ Q A+ + +R + + Y M+E
Sbjct: 224 IGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDE 258
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-08
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 797 RKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTEL 856
F + K+ ++ + + AR++++R + +W E
Sbjct: 338 TPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEY 393
Query: 857 EMRNRQVNHARNLWDRAVTILPRANQFW-YKYTYMEEMLENVAGKL 901
E + R L D+ + + +E + G+
Sbjct: 394 EFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRY 439
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 7e-08
Identities = 14/167 (8%), Positives = 39/167 (23%), Gaps = 10/167 (5%)
Query: 744 LSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFE 803
+ + Q ++ + R ++ R
Sbjct: 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN-GMKLGGRPHESRMHFIHN 203
Query: 804 DNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQV 863
+ + Y+++ Q ++A+ + ER +++ + L L Y +
Sbjct: 204 YILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDG-MFLSLYYGLVMDEEAVY 262
Query: 864 NHARNLWDRAVTILPRANQ------FWYKYTYMEEMLENV--AGKLF 902
+ + + + KLF
Sbjct: 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLF 309
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 1e-07
Identities = 21/165 (12%), Positives = 58/165 (35%), Gaps = 25/165 (15%)
Query: 746 DEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFE-- 803
+Y F L+ + ++Y+ ++ ++ +L + +E
Sbjct: 28 KDYRSLESLFGRCLKKSYNLDLWMLYI----EYV--RKVSQKKFKLY-------EVYEFT 74
Query: 804 -DNIRKNRMVISNWIKY----AQWEESQKQVDRARSIYERALDVDHRNI-TLWLKYTELE 857
+ +Y + E+ Q ++++ R+ Y RAL ++ LW + E
Sbjct: 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE 134
Query: 858 MRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLF 902
+ ++ + + D P + +Y ++ ++ + K
Sbjct: 135 LELNKITGKKIVGDTL----PIFQSSFQRYQQIQPLIRGWSVKNA 175
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 4e-13
Identities = 13/72 (18%), Positives = 28/72 (38%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
DP + L D +A+ F ++ PD + LG +R ++A++ Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 1822 TALQLSPGFVRA 1833
++++
Sbjct: 66 QGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-11
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
P+D L + A+ + ++ P +V Y+LG L A++
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 1854 FLTALNQQAATHDGLTPHGLEPRAVKEM 1881
+ + + + + E+
Sbjct: 64 YAQGIE--------VAREEGTQKDLSEL 83
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 1602 MQNETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658
M++ + F L QE L+ + A+ E + +PD + LG ++ A
Sbjct: 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60
Query: 1659 IAALSKCLSIEPKNLEA 1675
I ++ + + +
Sbjct: 61 IDTYAQGIEVAREEGTQ 77
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 6e-13
Identities = 50/295 (16%), Positives = 95/295 (32%), Gaps = 65/295 (22%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAENEQDPQAIAALSKCL 1666
G+ GD + + + +AA + ++ + ++ LG + +A+ L
Sbjct: 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113
Query: 1667 SIEPKNLEALMAISICFTN------------EA--CLHDALD---TLKDKIRPGQESNPR 1709
++ K++ + + N EA C L L D+ +
Sbjct: 114 TLA-KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR--LSE----- 165
Query: 1710 PSAYKADALPSKL----TRLANHTLTFRSPLSSR----------EIHQQVLSLYLNAARQ 1755
AL L H E +Q+ L L + +
Sbjct: 166 -----GRAL-YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219
Query: 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLAN 1809
+Q LG + L ++ A++ + L++ R + R + LG S
Sbjct: 220 -GAQG---RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275
Query: 1810 GNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ E+A E Y L L+ ++ Y+LG T L A+E+ L
Sbjct: 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 6e-11
Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 13/130 (10%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDV---QNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-- 1796
+ + ++Q + G + + V F++A+Q +D
Sbjct: 24 GGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR 83
Query: 1797 --SRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGANT 1848
S ++++LG + +A++ + L L+ G ++ NLG T +G
Sbjct: 84 TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD 143
Query: 1849 QAVEHFLTAL 1858
+A L
Sbjct: 144 EAAICCERHL 153
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-10
Identities = 48/287 (16%), Positives = 104/287 (36%), Gaps = 47/287 (16%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA---AKQ---EPDNAEVWLSLGISLAENEQDPQAIAALSK 1664
LG GD A+ Y + AK A+ +LG +L + +A +
Sbjct: 92 LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151
Query: 1665 CLSIEPKNLEALMAISICFTNEACLHDAL-DTLKDKIRPGQESNPRPSAYKA-----DAL 1718
L++ + L ++ N ++ A L + + + + +A + L
Sbjct: 152 HLTLA-RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210
Query: 1719 PSKLTR-LANHTLTFRSPLSS--------------REIHQQVLSLYLNAARQCPSQSIDP 1763
KL R L + R+ + E HQ+ L + R+ ++ +
Sbjct: 211 --KLMRDLGDRGAQGRA-CGNLGNTYYLLGDFQAAIEHHQERLRIA----REFGDRAAER 263
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAV 1817
+ LG +++ A + ++ L + R +++ LG + + A+
Sbjct: 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI 323
Query: 1818 EAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
E ++ L ++ G RA ++LG +G + +A+++ L
Sbjct: 324 EYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-10
Identities = 45/287 (15%), Positives = 72/287 (25%), Gaps = 81/287 (28%)
Query: 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLGISLAENEQDPQAIA 1660
+A A L G + ++Q G L +A
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS 1720
+ ++L +S ++ + L G Y A+
Sbjct: 70 FFQAAIQAGTEDLRT---LSAIYSQLGNAYFYL---------GD--------YN-KAM-- 106
Query: 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYD 1780
+ H+ L+L + + ++ LG + +D
Sbjct: 107 -------------------QYHKHDLTLAKSMNDR-LGEA---KSSGNLGNTLKVMGRFD 143
Query: 1781 KAVDCFRSALQV------RPDDSRLWNRLG-----------------ASLANGNRPEEAV 1817
+A C L + R + R LG AV
Sbjct: 144 EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203
Query: 1818 EAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
E Y L+L RA NLG T LG A+EH L
Sbjct: 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 10/99 (10%)
Query: 1778 EYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS---- 1827
+ Q G L N V + A+Q
Sbjct: 23 SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82
Query: 1828 PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
LG +LG +A+++ L + +D
Sbjct: 83 RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAY 1820
LG + L E++ A++ L + R ++R LG + + E A++
Sbjct: 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366
Query: 1821 HTALQLS 1827
LQL+
Sbjct: 367 EQHLQLA 373
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 48/285 (16%), Positives = 90/285 (31%), Gaps = 42/285 (14%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA---AKQE-PDNAEVWLSLGISLAENEQDPQAIAALSKCL 1666
G+ + GD + + + EAA ++ + ++ LG + +A+ L
Sbjct: 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70
Query: 1667 SIEPKNLEALMAISICFTNEACLHDALDTLKD---------KIRPGQESNPRPSAYKADA 1717
++ + + + + N L + I +E N + +A A
Sbjct: 71 TLA-RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RELNDKVG--EARA 125
Query: 1718 LPS---------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNA---ARQCPSQSIDPDV 1765
L + K T P R Q + LY ++
Sbjct: 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA 185
Query: 1766 QNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEA 1819
LG L + AV L + + + R ++ LG + E A E
Sbjct: 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245
Query: 1820 YHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
Y L L+ ++ Y+LG T L +A+++ L L
Sbjct: 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-10
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV----RPDDSRLWNRLGASLANGNRPEEAVEAYHT 1822
G S + V F +A+QV S ++++LG + + +A+E +H
Sbjct: 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68
Query: 1823 ALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L L+ G +A NLG T LG +A+ L
Sbjct: 69 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 48/297 (16%), Positives = 97/297 (32%), Gaps = 48/297 (16%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA------AKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664
LG D A+ Y + A+ +LG +L +AI +
Sbjct: 49 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108
Query: 1665 CLSIEPKNLEALMAISICFTNEACLHDAL---DTLKDKIRPGQESNPRPSAYKADALP-- 1719
L I + L + + N ++ A G+ +A + A+
Sbjct: 109 HLDIS-RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ-AAVDLY 166
Query: 1720 ----SKLTRLANHTLTFRSPLSS--------------REIHQQVLSLYLNAARQCPSQSI 1761
S +T L + R+ + H+Q L + ++ ++
Sbjct: 167 EENLSLVTALGDRAAQGRA-FGNLGNTHYLLGNFRDAVIAHEQRLLIA----KEFGDKAA 221
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEE 1815
+ + LG + E++ A + ++ L + R +++ LG + E+
Sbjct: 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 281
Query: 1816 AVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
A++ + L ++ G RA ++LG LG + QA+ L D
Sbjct: 282 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 18/139 (12%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------R 1793
+ + + + S + + LG + +Y KA++ L + +
Sbjct: 26 SFFEAAVQVGTEDL---KTLS---AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGAN 1847
+++ LG +L +EA+ L +S G RA YNLG G +
Sbjct: 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139
Query: 1848 TQAVEHFLTALNQQAATHD 1866
T + +
Sbjct: 140 FGCPGPQDTGEFPEDVRNA 158
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-12
Identities = 46/286 (16%), Positives = 88/286 (30%), Gaps = 42/286 (14%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA----AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCL 1666
G+ + GD + + + EAA + + ++ LG + +A+ L
Sbjct: 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74
Query: 1667 SIEPKNLEALMAISICFTNEACLHDALDTLKD---------KIRPGQESNPRPSAYKADA 1717
++ + + + + N L + I +E N + +A A
Sbjct: 75 TLA-RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RELNDKVG--EARA 129
Query: 1718 LPS---------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNA---ARQCPSQSIDPDV 1765
L + K P R+ Q + Y ++
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189
Query: 1766 QNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEA 1819
LG L + AV L + + + R ++ LG + E A E
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249
Query: 1820 YHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
Y L L+ ++ Y+LG T L +A+++ L L
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 8e-10
Identities = 56/352 (15%), Positives = 109/352 (30%), Gaps = 64/352 (18%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA------AKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664
LG D A+ Y + A+ +LG +L +AI +
Sbjct: 53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112
Query: 1665 CLSIEPKNLEALMAISICFTNEACLHDAL---DTLKDKIRPGQESNPRPSAYKADALPS- 1720
L I + L + + N ++ A G+ A + A+
Sbjct: 113 HLDIS-RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ-AAVDFY 170
Query: 1721 ----KLTR-LANHTLTFRSPLSS--------------REIHQQVLSLYLNAARQCPSQSI 1761
L L + R+ + H+Q L + ++ ++
Sbjct: 171 EENLSLVTALGDRAAQGRA-FGNLGNTHYLLGNFRDAVIAHEQRLLIA----KEFGDKAA 225
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEE 1815
+ + LG + E++ A + ++ L + R +++ LG + E+
Sbjct: 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 285
Query: 1816 AVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHF--------------- 1854
A++ + L ++ G RA ++LG LG + QA+
Sbjct: 286 AIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345
Query: 1855 -LTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINL 1905
LTA + L ++ + I SL G P G + N+
Sbjct: 346 ELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENM 397
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 4e-09
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDD----SRLWNRLGASLANGNRPEEAVEAYHT 1822
G S + V F +A+QV +D S ++++LG + + +A+E +H
Sbjct: 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72
Query: 1823 ALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
L L+ G +A NLG T LG +A+ L+
Sbjct: 73 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 18/139 (12%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------R 1793
+ + + + S + + LG + +Y KA++ L + +
Sbjct: 30 SFFEAAVQVGTEDL---KTLS---AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGAN 1847
+++ LG +L +EA+ L +S G RA YNLG G +
Sbjct: 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143
Query: 1848 TQAVEHFLTALNQQAATHD 1866
+
Sbjct: 144 FGCPGPQDVGEFPEEVRDA 162
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 8e-12
Identities = 72/519 (13%), Positives = 137/519 (26%), Gaps = 119/519 (22%)
Query: 953 VDSEVG--GLSSKGLIEGTVTTPSYLPEIQEKSRQDSSR--------------KPVVPRT 996
+D E G K ++ V +++ K QD + K V T
Sbjct: 7 MDFETGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 997 NLI--CLGLSSSRATGSVPSRSENEPYLF---RIKFIPGDLKSRMVLYPNKLTKFHSNRM 1051
+ L Y F IK +Y + + +++
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 1052 SGLARHKVRNHKQTNIHFYILKNTVAIELIPQSRLRFVY----CG-TFQNMCPMLEGDLV 1106
+ R + +EL P + + G T + D+
Sbjct: 125 VFAKYNVSRLQPYLKLR------QALLELRPAKNV-LIDGVLGSGKT------WVALDVC 171
Query: 1107 QSFLLRHLEAAAKQEPDNAEVWLSLG-----ISLAENEQLLGEFWEHNLGNMQQAFRMDN 1161
S+ + + + D WL+L ++ E Q L + N ++ N
Sbjct: 172 LSYKV-------QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSSN 222
Query: 1162 LLAEMRDIEAASQRPKPQQSAPISLLARQDDAREWANQFLEAGSHFEH-------TPPET 1214
+ + I+A +R + LL + + A F T +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLV-LLNV--QNAKAWNA---FNLSCKILLTTRFKQ 276
Query: 1215 IWDNAPIMRGSEILPQEDLGGLQLGFGPQWCSEFLRTSEPLLDNTQEELTNLRALS---E 1271
+ D + I L ++L L + TN R LS E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAE 335
Query: 1272 DYSSDANKADSNQNNILLNALKTTAEDSVKTLDQNPDMKQ--SKLLKFMSNVATDGTPVL 1329
D N ++ + L T E S+ L+ + ++ +L F + +
Sbjct: 336 SIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSA-----HI- 387
Query: 1330 SDPEAATVQQWG-SEFQSTTSPEHQWESAFLGQNASGTTSGVSTSGTVDKPEPALWNELN 1388
P W ++ L +
Sbjct: 388 --PTILLSLIWFDVIKSDVMVVVNKLHKYSL---------------------------VE 418
Query: 1389 SHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHVSLV 1427
KE T S+ + + + ++H S+V
Sbjct: 419 KQPKESTISI-------PSIYLELKVKLENEYALHRSIV 450
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 3e-10
Identities = 102/650 (15%), Positives = 193/650 (29%), Gaps = 207/650 (31%)
Query: 604 TANAENRYK----VYDDEYL----CR-VLEAT--VFTPAKFIQEETLESPHFEYFDITGI 652
T + +YK V++D ++ C+ V + + + + + + S ++G
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKD----AVSGT 64
Query: 653 DPVITIFLS-------EFFSKPVD-------TPGQESNPRPSAHKADALPSKLTRLANHT 698
+ LS +F + + +P + +PS + RL N
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-MTRMYIEQRDRLYNDN 123
Query: 699 LTFRSPLS-SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG-----VLFNLSDEYDKAV 752
F + + SR Q L L P++++ + +G+ + A+
Sbjct: 124 QVF-AKYNVSRL--QPYLKLRQALLELRPAKNV---LIDGVLGSGKTWV---------AL 168
Query: 753 DCFRS-ALQVRPDF----------------TELLVYLFSSLD---FQPPKQKISDPDELR 792
D S +Q + DF E+L L +D + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 793 DYQHRKRKAFEDNIRKNRMVI-----SNWIKYAQWEE-----------SQKQV-DRARSI 835
Q R+ + +N +++ + W KQV D +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKA----WNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 836 YERALDVDHRNITLWLKYTE------LEMRNRQVNHARNLWDRAVTILPRA--------- 880
+ +DH ++TL + L+ R ++L +T PR
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR------PQDLPREVLTTNPRRLSIIAESIR 338
Query: 881 -----NQFWYKYTY------MEEMLENVAG--------KLFVFHRDS-ISQVTLWLGALT 920
W +E L + +L VF + I + L
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL------ 392
Query: 921 LSLEGLGSNLQSWVRFLARDVGECCCGQVVSTVDSEVGGLSSKGLI-----EGTVTTPSY 975
S + W + S V V L L+ E T++ PS
Sbjct: 393 -------SLI--W------------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 976 LPEIQEKSRQDSS-RKPVVPRTNLICLGLSSSRATGSVPSRSENEPYLFRIKFIPGDLKS 1034
E++ K + + + +V N+ + + +P + Y + I LK+
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPK----TFDSDDLIPPYLDQ--YFY--SHIGHHLKN 483
Query: 1035 -----RMVLYPNKLTKFH--SN--RMSGLAR----------HKVRNHKQTNIHFYILKNT 1075
RM L+ F R A +++ +K YI N
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-----YICDND 538
Query: 1076 VAIELIPQSRLRFVY-CGTFQNMCPMLEGDLVQSFLLRH----LEAAAKQ 1120
E + + L F+ DL++ L+ E A KQ
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYT--DLLRIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 8e-09
Identities = 100/742 (13%), Positives = 203/742 (27%), Gaps = 232/742 (31%)
Query: 190 DANKADSNQNNILLNALKTTAEDSVKTLDQN--PDMKQSKLLKFMSNVATDGTPVLSDPE 247
+ + +IL + V D DM + +LS E
Sbjct: 10 ETGEHQYQYKDILSVFE----DAFVDNFDCKDVQDMPK---------------SILSKEE 50
Query: 248 AATVQQWGSEYQST--------TSPEHQWESAFLGQNASVFDLPPRYGPILFCVSFQWIN 299
+ T + E + F+ + L Y F +S
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEV-----LRINYK---FLMS-PIKT 100
Query: 300 EVKFITLLTLCLIIEVNQ-HGFVR--ARYNLGITCVHLGANTQAVEHFLTALNQQAAAHD 356
E + +++T I + ++ + + A+YN+ + Q AL +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--------SRLQPYLKLRQAL-LELRPAK 151
Query: 357 GLTPHG--------LEPRADGLTPHGLEPRAVKEMSDSI-WYSLRVVLSVLNRSDLHHCV 407
+ G + D + ++ + M I W +L+ +C
Sbjct: 152 NVLIDGVLGSGKTWVA--LDVCLSYKVQCK----MDFKIFWLNLK------------NCN 193
Query: 408 TNSPACISAKALLTVVSSSISYPPPHINLTQPEWDQEKSAARDCSNDDPSGYQPCTKLHN 467
+ + LL + + + H + + ++ R P Y+ C L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENC--L-- 247
Query: 468 LSGVLGTVHLTYHCALGSHTKAKWYIVHIEYNN----TLVFGRILSDSSKSRFEDVVAIQ 523
L VL V N L+ R K + + A
Sbjct: 248 L--VLLNV---------------QNAKAWNAFNLSCKILLTTR-----FKQVTDFLSAAT 285
Query: 524 ELLFCLGLHPHFELKNEEKKVITKWTIISTQLISWSKLCSDTKGAKYDSAVMCNRNLPLF 583
L H +E K ++ K+ Q L + N P
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-----DL----------PREVLTTN-PRR 329
Query: 584 VN-FPKHVPNARRSVNKQFYITANAENRYKVYDDEYLCRVLEATVFTPAKFIQEETLESP 642
++ + + + T + +K + + L ++E+++ LE
Sbjct: 330 LSIIAESI--------RDGLATWD---NWKHVNCDKLTTIIESSL---------NVLEPA 369
Query: 643 HF-EYFDITGIDPVITIFLSEFFSKPVDTPGQ-------ESNPRPSAHKADALPSKLTRL 694
+ + FD + F P + + L L
Sbjct: 370 EYRKMFDRLSV-----------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SL 416
Query: 695 AN----------HTLTFR---SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNG---- 737
++ + +H+ ++ Y N + S + P +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYS 475
Query: 738 -LGVLFNLSD-EYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI---------- 785
+G +L + E+ + + FR +F LDF+ +QKI
Sbjct: 476 HIG--HHLKNIEHPERMTLFRM--------------VF--LDFRFLEQKIRHDSTAWNAS 517
Query: 786 -SDPDELRD---YQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALD 841
S + L+ Y + DN K +++ + + E + + AL
Sbjct: 518 GSILNTLQQLKFY----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 842 VDHRNITLWLKYTELEMRNRQV 863
+ I E ++QV
Sbjct: 574 AEDEAI--------FEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-07
Identities = 78/521 (14%), Positives = 150/521 (28%), Gaps = 159/521 (30%)
Query: 1497 VASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNEL 1556
+ + +QP T + DR +++F V + +P L +L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVF---------------AKYNVSRLQPYL--KL 140
Query: 1557 NSHWKEMTES--------LGSGES-LPHQWFSDFSRNQRSSVSMHEYTFAEDN------- 1600
E+ + LGSG++ + + + + N
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 1601 PMQN---------ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD---------NAEVW 1642
+Q + + KLR + + + L +K + NA+ W
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAW 259
Query: 1643 --LSLG-----------------------ISLAENEQ---DPQAIAALSKCLSIEPKNL- 1673
+L ISL + + + L K L P++L
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 1674 -EAL----MAISICFTNEACLHDALDTLK-------DKIRPGQES---NPRPSAYKA--- 1715
E L +SI + D L T DK+ ES P+ Y+
Sbjct: 320 REVLTTNPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 1716 -------DA-LPSK-----------------LTRLANHTLTFRSPLSSR-EIHQQVLSLY 1749
A +P+ + +L ++L + P S I S+Y
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP----SIY 432
Query: 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN 1809
L + + + + + +N+ +D L D ++ +G L N
Sbjct: 433 LELKVKLEN---EYALHRSIVDHYNIPKTFDS------DDLIPPYLDQYFYSHIGHHLKN 483
Query: 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869
PE + L F+ + H A L L Q +
Sbjct: 484 IEHPERMTL--FRMVFLDFRFLEQKIR------HDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 1870 PHGLEPRAVKEMSDSIWYSLRGFHPPFGDKL---PHINLTQ 1907
+ +P+ + + ++ F P + L + +L +
Sbjct: 536 DN--DPK-----YERLVNAILDFLPKIEENLICSKYTDLLR 569
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
GVL ++ A+D F V+ SR+ +G EA +A+ ++
Sbjct: 12 EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
A + G+ A++ AL Q
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 16/114 (14%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
+ +G ++ + +A F ++ + + + G + + A++
Sbjct: 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95
Query: 1822 TAL-QLSPGFVRA---------------RYNLGITCVHLGANTQAVEHFLTALN 1859
AL QL + YN+ +A E A +
Sbjct: 96 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 22/223 (9%), Positives = 58/223 (26%), Gaps = 55/223 (24%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ G + D A+ A + ++ + ++G + +A A ++ ++
Sbjct: 10 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 66
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ A + L+ + I
Sbjct: 67 DKHLAVA-------YFQRGMLYYQTEKYDLAI----------KDL-------------KE 96
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
L + L L A +V + ++ +E+ KA +
Sbjct: 97 ALIQLRGNQLIDYKILGLQFKLFAC----------EVLYNIAFMYAKKEEWKKAEEQLAL 146
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831
A ++ + ++ ++A+E P +
Sbjct: 147 ATSMKSEPRH------------SKIDKAMECVWKQKLYEPVVI 177
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
+ ++ +G ++ A + ++ A + G+ + E+ AI
Sbjct: 33 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 92
Query: 1661 ALSKCLS-IEPKNLEALMAISICFTNEAC 1688
L + L + L + + F AC
Sbjct: 93 DLKEALIQLRGNQLIDYKILGLQFKLFAC 121
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 13/116 (11%)
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAV 1817
+ LG ++ D +D+A F++ Q + R +++G + A
Sbjct: 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86
Query: 1818 EAYHTALQLS-------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
+ +L Y + +H G A + + +L D
Sbjct: 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 17/133 (12%)
Query: 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------ 1792
R Q + ++ + + + +G++ ++ +D A CF ++
Sbjct: 46 RASFQALQQQA----QKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101
Query: 1793 -RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLG 1845
S + + A + Y +L + A LG
Sbjct: 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161
Query: 1846 ANTQAVEHFLTAL 1858
+A +H+L A
Sbjct: 162 NLLEAQQHWLRAR 174
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 8e-07
Identities = 12/119 (10%), Positives = 26/119 (21%), Gaps = 15/119 (12%)
Query: 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------ 1792
R + L + + S + + + A + +L
Sbjct: 86 RRCFLEERELLASLPEDPLAASA---NAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Query: 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLG 1845
+ + + LG EA + + A + L H
Sbjct: 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 1781 KAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------P 1828
+A D + Q S LG A +R +EA ++ Q +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
RA + +G+ G A FL
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEER 93
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-10
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGF 1830
+ + ++ AV + A+++ P ++ + NR A+ + AV+ A+ + P +
Sbjct: 22 QMKVEN-FEAAVHFYGKAIELNPANAVYFCNR-AAAYSKLGNYAGAVQDCERAICIDPAY 79
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTAL 1858
+A +G+ L + +AV ++ AL
Sbjct: 80 SKAYGRMGLALSSLNKHVEAVAYYKKAL 107
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
Y AV A+ + P S+ + R+G +L++ N+ EAV Y AL+L P + NL
Sbjct: 61 NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Query: 1838 GIT 1840
I
Sbjct: 121 KIA 123
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 16/131 (12%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------R 1793
H+Q L + ++ ++ + + LG + E++ A + ++ L + R
Sbjct: 30 IAHEQRLLIA----KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGAN 1847
+++ LG + E+A++ + L ++ G RA ++LG LG +
Sbjct: 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 145
Query: 1848 TQAVEHFLTAL 1858
QA+ L
Sbjct: 146 DQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAY 1820
LG L + AV L + + + ++ LG + E A E Y
Sbjct: 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY 72
Query: 1821 HTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L L+ ++ Y+LG T L +A+++ L L
Sbjct: 73 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAY 1820
LG + L +Y+KA+D L + R + R LG + ++A+
Sbjct: 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152
Query: 1821 HTALQLS 1827
L++S
Sbjct: 153 EKHLEIS 159
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y +A C+ A+ P + + NR +PE+A+ AL+L V+A +
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNR-ALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82
Query: 1837 LGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
LG + + + +A+ + A + L D I +LR
Sbjct: 83 LGQCQLEMESYDEAIANLQRAYS-------------LAKEQRLNFGDDIPSALR 123
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 1777 DEYDKAV-DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
+ ++A+ DC R AL++ + LG +EA+ A L+
Sbjct: 57 QQPEQALADC-RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
EY KA+D + AL + P + NR A+ + + E+A E A + P + +A
Sbjct: 26 EYSKAIDLYTQALSIAPANPIYLSNR-AAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84
Query: 1837 LGITCVHLGANTQAVEHFLTAL 1858
LG+ + A E + +
Sbjct: 85 LGLARFDMADYKGAKEAYEKGI 106
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+++KA + A V P S+ W+RLG + + + A EAY ++
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 1837 LGI 1839
G+
Sbjct: 119 RGL 121
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
D A+ C+ A+++ P + L+ NR A+ A ++A E + L P + +
Sbjct: 19 NIDDALQCYSEAIKLDPHNHVLYSNR-SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77
Query: 1837 LGITCVHLGANTQAVEHFLTAL-----NQQA 1862
L +A + L N Q
Sbjct: 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-07
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y KA + + ++PD + ++R A+L NR EEA Y L+ + +
Sbjct: 52 GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111
Query: 1837 L 1837
L
Sbjct: 112 L 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 1776 SDEYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
++ AV + ++ P+D+R + NR A+LA EA+ + A++ P FVRA
Sbjct: 17 KSDWPNAVKAYTEMIKRAPEDARGYSNR-AAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75
Query: 1835 YNLGITCVHLGANTQAVEHFLTAL 1858
+ + A+E A
Sbjct: 76 IRKATAQIAVKEYASALETLDAAR 99
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 9/63 (14%), Positives = 18/63 (28%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+ +A+ A++ P+ R + R + A+E A
Sbjct: 52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111
Query: 1837 LGI 1839
I
Sbjct: 112 REI 114
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y +A+ + A++ P D++L+ NR A + A++ +QL P F++
Sbjct: 31 DYPQAMKHYTEAIKRNPKDAKLYSNR-AACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89
Query: 1837 LGITCVHLGANTQAVEHFLTAL 1858
+ T+A++ + AL
Sbjct: 90 KAAALEAMKDYTKAMDVYQKAL 111
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
E+ A+ +Q+ P + + R A+L +A++ Y AL L A
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 1837 L 1837
Sbjct: 124 Y 124
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 4e-08
Identities = 16/130 (12%), Positives = 45/130 (34%), Gaps = 4/130 (3%)
Query: 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG-VLFNLSDEYDKAVDCFRSAL 1790
FR+ L E ++ L +A + + V + +L +L + + ++ + +
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAII 159
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
+ +P + ++W+ + P + +E L A +
Sbjct: 160 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219
Query: 1851 VEHFLTALNQ 1860
+++ L +
Sbjct: 220 LQYVDQLLKE 229
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 9e-08
Identities = 32/216 (14%), Positives = 69/216 (31%), Gaps = 27/216 (12%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
Q DL + Y+ A +++P N +VW + + Q + ++ L+ + KN A
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204
Query: 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPR-PSA--YKADALPSKLTRLANHTLTFRS 1734
+ L + + + + R S + + S T
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLL----KEDVRNNSVWNQRYFVI-SNTTG---------- 249
Query: 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794
+ R + ++ + L + P + N L + K + L ++P
Sbjct: 250 -YNDRAVLEREVQYTLEMIKLVPH---NESAWNYLKGILQDRG-LSKYPNLLNQLLDLQP 304
Query: 1795 DDSRLWNRLGA----SLANGNRPEEAVEAYHTALQL 1826
S + N+ + + + AL+L
Sbjct: 305 SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 7e-05
Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 35/240 (14%)
Query: 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673
+ + Q D P+ + +V+ L +E+ +A + + N
Sbjct: 76 DPVPQNDGPNPV----VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY 131
Query: 1674 EALMAISICFTN-EACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLANHTLT 1731
+ + + LH+ ++ + I E P+ + +H
Sbjct: 132 TVWHFRRVLLKSLQKDLHEEMNYITAII----EEQPKNYQVW-------------HHR-- 172
Query: 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791
R + Q L + Q + + +D + L+
Sbjct: 173 -RVLVEWLRDPSQELEFIADILNQDAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228
Query: 1792 VRPDDSRLWNRLGASLANGNRP------EEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
++ +WN+ ++N E V+ ++L P A L G
Sbjct: 229 EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 9e-05
Identities = 9/119 (7%), Positives = 29/119 (24%), Gaps = 9/119 (7%)
Query: 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805
++ + P + V + VL + + ++ L + W
Sbjct: 152 MNYITAIIEEQPK---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT------QAVEHFLTAL 1858
+ + ++ L+ + + V++ L +
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 3e-04
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP-EEAVEAYHT 1822
DV + + + ++A R A+++ + +W+ L + + E +
Sbjct: 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157
Query: 1823 ALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862
++ P + ++ + L +Q +E LNQ A
Sbjct: 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 5e-08
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 14/145 (9%)
Query: 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV----- 1792
S Q L +Y N + ++ YDKA+ +AL++
Sbjct: 160 SMYHILQALDIYQNHPLYSIRTI---QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216
Query: 1793 -RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL-----SPGFVRARYNLGITCVHLGA 1846
+ + S + AVE + A ++ + + L T G
Sbjct: 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ 276
Query: 1847 NTQAVEHFLTALNQQAATHDGLTPH 1871
+A + L+ A
Sbjct: 277 TQKAFQFIEEGLDHITARSHKFYKE 301
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 17/132 (12%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR----PD 1795
+++ + + + + ++ AL +
Sbjct: 122 GYYREAEKEL----PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY 177
Query: 1796 DSRL---WNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGA 1846
R + + + ++A+ AL+L+ + N+ + G
Sbjct: 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237
Query: 1847 NTQAVEHFLTAL 1858
+ AVEHF A
Sbjct: 238 DQMAVEHFQKAA 249
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAYHT 1822
G+ EY +A+ +R A + + + ++ + + + ++
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166
Query: 1823 ALQL-------SPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
AL + S +++ + + +A+ H AL
Sbjct: 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE 210
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 31/239 (12%), Positives = 65/239 (27%), Gaps = 54/239 (22%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLGISLAENE 1653
+ + F G + Q + AI Y A K+ + + AE + + +
Sbjct: 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155
Query: 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAY 1713
Q ++ + + L I + + A +D Y
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF---------KH--------Y 198
Query: 1714 KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF 1773
AL + L L A + + +
Sbjct: 199 D-KAL---------------------PHLEAALEL----AMDIQNDRFIAISLLNIANSY 232
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDS-----RLWNRLGASLANGNRPEEAVEAYHTALQLS 1827
+ S + AV+ F+ A +V + ++ L +L + ++A + L
Sbjct: 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP-------GF 1830
+++KA + A+++ P + +N A + E V+ A+++
Sbjct: 23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTAL 1858
+A G + AV+ F +L
Sbjct: 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 1771 VLFNLSDEYDKAVDCFRSALQVRPDD-------SRLWNRLGASLANGNRPEEAVEAYHTA 1823
V F + + V A++V + ++ +R G + N AV+ +H +
Sbjct: 51 VYFEEKK-FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109
Query: 1824 LQLSP 1828
L
Sbjct: 110 LSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 12/92 (13%), Positives = 32/92 (34%)
Query: 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669
LG +Q D A ++ + A + +P N + + E ++ + + K + +
Sbjct: 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG 72
Query: 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIR 1701
+ I+ + + L ++
Sbjct: 73 RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 15/134 (11%)
Query: 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV----- 1792
S + +Q +Y + F +Y+ A+ F+ A +
Sbjct: 162 SMDYARQAYEIYKEHEAYNIRLL---QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218
Query: 1793 -RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLG 1845
R +G + ++ E+A+ + A+ + P +A + + LG
Sbjct: 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG 278
Query: 1846 ANTQAVEHFLTALN 1859
+A E+ +
Sbjct: 279 KIDKAHEYHSKGMA 292
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 8e-08
Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV-------RPDDSRLWNRLGASLANGNRPEEAVEA 1819
+ + + ++D R A ++ + + + + + E+A+
Sbjct: 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISH 206
Query: 1820 YHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ A ++ R YN+G+ A+ +F A+
Sbjct: 207 FQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 13/113 (11%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAY 1820
G+ EY A+ F+ A R + + + ++ S + +++
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166
Query: 1821 HTALQLS-------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
A ++ ++ + L A+ HF A + A
Sbjct: 167 RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 41/291 (14%), Positives = 87/291 (29%), Gaps = 59/291 (20%)
Query: 1592 HEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAA------AKQEPDNAEVWLSL 1645
+ A + F G +L Q + SAI + + A K + AE + +
Sbjct: 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKM 149
Query: 1646 GISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQE 1705
S +Q ++ + I ++ + + C + A L Q
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL---------KQ- 199
Query: 1706 SNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV 1765
Y+ DA+ Q+ S+ A +
Sbjct: 200 -------YE-DAI---------------------SHFQKAYSM----AEAEKQPQLMGRT 226
Query: 1766 QNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEA 1819
+G+ N +Y+ A+ F+ A+ V P + + + + ++A E
Sbjct: 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY 286
Query: 1820 YHTALQLSP----GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
+ + S + + + G + +A++ F L + D
Sbjct: 287 HSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD 337
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y A+ + A++ P+++ L+ NR A L + A++ T ++L F++
Sbjct: 28 DYPTAMRHYNEAVKRDPENAILYSNR-AACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86
Query: 1837 LGITCVHLGANTQAVEHFLTAL 1858
V + ++A + AL
Sbjct: 87 KAACLVAMREWSKAQRAYEDAL 108
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 9e-06
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 1777 DEYDKAV-DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835
E+ +A+ DC + +++ + + R A L +A AY ALQ+ P AR
Sbjct: 61 MEFQRALDDC-DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119
Query: 1836 NL 1837
+
Sbjct: 120 GV 121
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y+ A+ + A+++ P ++ + NR + A+ A++L +++ Y
Sbjct: 28 DYENAIKFYSQAIELNPSNAIYYGNR-SLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86
Query: 1837 LGITCVHLGANTQAVEHFLTAL 1858
+ + LG A+ + T +
Sbjct: 87 RAASNMALGKFRAALRDYETVV 108
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 1777 DEYDKAV-DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
+ Y A+ D A+++ + + R AS + A+ Y T +++ P
Sbjct: 61 ECYGYALGDA-TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGF 1830
LF Y +AV C+ + +P + + N+ +L +A++ L+ +
Sbjct: 14 LFKQGL-YREAVHCYDQLITAQPQNPVGYSNK-AMALIKLGEYTQAIQMCQQGLRYTSTA 71
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
L AV + +
Sbjct: 72 EHV-AIRSKLQYRLELAQGAVGSVQIPVVE 100
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-07
Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 37/269 (13%)
Query: 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAA------ 1631
FS F + + + Y E + + + Q + R +I ++ A
Sbjct: 94 FSTFMVHDKIN-----YNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTML 148
Query: 1632 ----AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI-----SIC 1682
+ + L SL++ P I P L +
Sbjct: 149 DKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLL 208
Query: 1683 FTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE 1740
++ L+ A + L + + P A KA L + + PL ++
Sbjct: 209 HGDDKSLNRASELLGEIVQSSPE---FTYARAEKA---------LVDIVRHSQHPLDEKQ 256
Query: 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLW 1800
+ L+ ++ P + + V + + D++ + + + +
Sbjct: 257 LAA--LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNY 313
Query: 1801 NRLGASLANGNRPEEAVEAYHTALQLSPG 1829
LG EA +AY TA L PG
Sbjct: 314 VLLGKVYEMKGMNREAADAYLTAFNLRPG 342
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 3e-05
Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 1761 IDPD---VQNGLGVLFNL--------SDEYDKAVDCFRSALQVR--PDDSRLWNRLGASL 1807
P+ + ++ + + + + + + S ++ S
Sbjct: 228 SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA 287
Query: 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
+ +E+ +A +T + L ++ LG G N +A + +LTA N
Sbjct: 288 LVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFN 338
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 1778 EYDKAVDCFRSALQVRPDDS-RLWNRLGASLANGNRPEEAVEAYHTALQLSPGF--VRAR 1834
+ + A+ LQ P + +G + ++A+ Y +A++L+P ++AR
Sbjct: 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74
Query: 1835 YNLG 1838
+
Sbjct: 75 KMVM 78
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLS 1667
+E + QGD+ +A+ LE + EP E + +G + + +A+ +
Sbjct: 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63
Query: 1668 IEPKNLEA---LMAISI 1681
+ P + M + I
Sbjct: 64 LNPDSPALQARKMVMDI 80
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 1803 LGASLANGNRPEEAVEAYHTALQLSPG-FVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L N E A++A LQ P A Y +G LG +A+ ++ +A+
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y +A C+ A+ P + + NR +PE+A+ AL+L V+A +
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNR-ALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77
Query: 1837 LGITCVHLGANTQAVEHFLTAL 1858
LG + + + +A+ + A
Sbjct: 78 LGQCQLEMESYDEAIANLQRAY 99
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG-------F 1830
++D A+ + A ++ P + A + E A+++
Sbjct: 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTAL 1858
+A +G + A+ + +L
Sbjct: 79 AKAYARIGNSYFKEEKYKDAIHFYNKSL 106
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 1778 EYDKAVDCFRSALQVRPDD-------SRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
+Y+K + A++V ++ ++ + R+G S + ++A+ Y+ +L
Sbjct: 53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 3e-05
Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 20/136 (14%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR----- 1793
H S N Q P + L + + Y+ AV + AL+
Sbjct: 4 HHHHSSGRENLYFQGGGYE-IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG 62
Query: 1794 ---PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS--------PGFVRARYNLGITCV 1842
PD + + N L + N+ ++A + AL + P NL +
Sbjct: 63 HDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 122
Query: 1843 HLGANTQAVEHFLTAL 1858
G +A AL
Sbjct: 123 KRGKYKEAEPLCKRAL 138
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 1763 PDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR--------PDDSRLWNRLGASLANGN 1811
P V N L VL+ +Y +A + AL++R PD ++ N L N
Sbjct: 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG 167
Query: 1812 RPEEAVEAYHTALQLS--------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
+ EE Y AL++ P + + NL + G QA + L +
Sbjct: 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 18/115 (15%)
Query: 1762 DPDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR---------PDDSRLWNRLGASLAN 1809
DP+V +N L + ++ +A ++ L ++ +W
Sbjct: 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC 250
Query: 1810 GNRPEEAVEAYHTALQL------SPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ ++ SP NLG G A A+
Sbjct: 251 KGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 26/211 (12%), Positives = 57/211 (27%), Gaps = 30/211 (14%)
Query: 1639 AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE------ALMAISICFTNEACLHDA 1692
A + ++ +Q QA A + N A + + + +A
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
Query: 1693 LDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752
+ ++ E+ +A A L R L + + LY A
Sbjct: 96 VQYIEKASVMYVENGTPDTAAMA------LDRAGK--------LMEPLDLSKAVHLYQQA 141
Query: 1753 ARQCPSQSIDP---DVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRL 1803
A ++ ++ L ++D+A + + P +
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
+ A + + + PGF +
Sbjct: 202 VLVQLHRADYVAAQKCVRESYSI-PGFSGSE 231
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 17/132 (12%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD--- 1796
+ ++ +Y+ P + + G L D KAV ++ A V ++
Sbjct: 97 QYIEKASVMYVENGT--PDTAAM--ALDRAGKLMEPLD-LSKAVHLYQQAAAVFENEERL 151
Query: 1797 ---SRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGAN 1847
+ L + L + +EA + + P + + +H
Sbjct: 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211
Query: 1848 TQAVEHFLTALN 1859
A + + +
Sbjct: 212 VAAQKCVRESYS 223
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 11/105 (10%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRP------DDSRLWNRLGASLANGNRPEEAVEAY 1820
V F + + ++A D + + ++ + + G L + R EAV+
Sbjct: 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYI 99
Query: 1821 HTALQL-----SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
A + +P + + ++AV + A
Sbjct: 100 EKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAV 144
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 1777 DEYDKAV-DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
++YDKA + A++ D + R +L R ++AV + L P
Sbjct: 79 EDYDKAETEA-SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 8e-05
Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 4/142 (2%)
Query: 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782
+R L+ +S ++ ++ L P S + G Y A
Sbjct: 63 SRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL-AITMGFAACEAAQGNYADA 121
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR--ARYNLGIT 1840
++ +A + W + R + ++ +A + F+ A G+
Sbjct: 122 MEALEAAPVAGSEHLVAWMK-AVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180
Query: 1841 CVHLGANTQAVEHFLTALNQQA 1862
+L T+A A + A
Sbjct: 181 AANLALFTEAERRLTEANDSPA 202
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 1/101 (0%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
N +E E L+QG+ A+ ++ + + +V L+ L E +Q A
Sbjct: 2 NASPDE-QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQ 60
Query: 1660 AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKI 1700
L+ N + + +A L L+ ++
Sbjct: 61 ELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQEL 101
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLW----NRLGASLANGNRPEEAVEAYHTALQLSP 1828
DKA+ F ++ D+ +LW +L R EA+ + +++
Sbjct: 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 17/92 (18%), Positives = 30/92 (32%)
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
+ L +G L A+ L A K P +A + S L + +A L + + + P+
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQ 1704
L + D G+
Sbjct: 65 LPGASQLRHLVKAAQARKDFAQGAATAKVLGE 96
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 21/104 (20%)
Query: 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLAN----------GNRPEEAVEAYHTALQLSP 1828
+++ + + P D+ R G L +EA+ + AL + P
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 1829 GFVRARYNLGITCVHLGANT-----------QAVEHFLTALNQQ 1861
A + +G T A + F A+++Q
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 1763 PDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR--------PDDSRLWNRLGASLANGN 1811
P V N L VL+ +Y +A + AL++R PD ++ N L N
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141
Query: 1812 RPEEAVEAYHTALQLS--------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
+ EE Y AL++ P + + NL + G A + L +
Sbjct: 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 7e-04
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Query: 1763 PDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR--------PDDSRLWNRLGASLANGN 1811
PDV N L +++ ++Y +A AL +R P + N L
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 1812 RPEEAVEAYHTALQLS--------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ +EA AL++ P + NL + C + G + ++ AL
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 44.6 bits (104), Expect = 3e-04
Identities = 15/84 (17%), Positives = 33/84 (39%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + ++ +A +R A Q+ P + + +N+L ++ + Y ++ +
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217
Query: 1829 GFVRARYNLGITCVHLGANTQAVE 1852
F A NL + V+
Sbjct: 218 PFPAASTNLQKALSKALESRDEVK 241
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 41/328 (12%), Positives = 86/328 (26%), Gaps = 56/328 (17%)
Query: 1592 HEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVW-----LSLG 1646
HE ++ M E NA Q + G+ A + A ++ P LG
Sbjct: 2 HEIKDIREDTMHAEFNAL-RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLG 60
Query: 1647 ISLAENEQDPQAIAALSKCLSIEPKN------LEALMAISICFTNEACLHDALDTLKDKI 1700
L + +++A + + + ++ L +L+ S + L A +T +
Sbjct: 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120
Query: 1701 RPGQESNPRPSAYKADALPSKLTRL---------ANHTLTFRSPLSSREIHQQVLSLYLN 1751
+ E + + +L A + + S QQ L
Sbjct: 121 QLINEQHLEQLPMHEFLVRI-RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179
Query: 1752 AARQCPSQ------------------------SIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+ ++ + + + ++ + A + R
Sbjct: 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 239
Query: 1788 SALQVRPDDSRL----WNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNL 1837
+ ++ W + + E A + + R L
Sbjct: 240 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299
Query: 1838 GITCVHLGANTQAVEHFLTALNQQAATH 1865
G + A L AL T
Sbjct: 300 NQLYWQAGRKSDAQRVLLDALKLANRTG 327
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1956 | |||
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.94 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.92 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.91 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.88 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.88 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.87 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.87 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.87 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.87 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.87 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.86 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.86 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.86 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.86 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.86 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.86 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.86 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.86 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.85 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.85 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.84 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.84 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.83 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.83 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.83 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.83 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.83 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.82 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.81 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.81 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.8 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.78 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.78 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.75 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.75 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.75 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.74 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.73 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.73 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.72 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.72 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.71 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.71 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.7 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.67 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.67 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.67 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.67 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.67 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.65 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.63 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.62 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.61 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.59 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.55 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.55 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.52 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.52 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.52 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.51 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.5 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.49 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.49 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.48 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.48 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.47 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.46 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.46 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.45 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.44 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.41 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.39 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.39 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.39 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.38 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.38 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.38 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.38 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.37 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.37 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.35 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.34 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.34 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.34 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.32 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.32 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.3 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.3 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.29 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.29 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.29 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.29 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.29 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.28 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.28 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.28 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.28 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.28 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.27 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.24 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.24 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.23 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.23 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.22 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.21 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.21 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.19 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.19 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.18 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.17 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.17 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.16 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.16 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.14 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.12 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 99.12 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.09 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.08 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 99.06 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.03 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.03 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.0 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.98 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.98 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.98 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.91 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.89 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.81 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.7 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.66 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.66 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.57 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.56 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.54 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.52 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.45 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.39 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.25 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.17 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.16 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.98 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.91 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.9 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.89 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.86 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.81 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.78 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.74 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.73 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.71 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.69 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.52 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 97.44 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.4 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 97.25 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 97.04 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.0 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.78 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 96.68 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 96.57 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.02 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 95.83 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.11 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.1 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.87 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.39 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.38 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.87 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.84 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.4 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.37 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.27 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.21 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 92.59 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.41 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.44 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.88 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.65 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 87.51 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.48 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 84.28 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.75 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.71 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 83.55 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 83.39 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 82.55 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 82.13 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.21 |
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=291.55 Aligned_cols=329 Identities=43% Similarity=0.720 Sum_probs=262.2
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHh-chhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHH
Q psy8682 1549 EPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQR-SSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILY 1627 (1956)
Q Consensus 1549 d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs-~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~ 1627 (1956)
+...|..+...|+.+.+.+. ..+.|+++|++|+. . |++++.+.+.+|..+...++.+|..+...|++++|+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDA----EAHPWLSDYDDLTSAT--YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp -------------------------------------CHH--HHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHcCCc----hhhHHHHHHHHHHhhh--hhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 66789999999999987763 48999999999999 7 89999999998876677899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q psy8682 1628 LEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESN 1707 (1956)
Q Consensus 1628 fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~d 1707 (1956)
|+++++.+|.++.++..+|.++...|++++|+..|+++++++|++..++..+|.+|...|++++|+..+++++.. .
T Consensus 87 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 162 (368)
T 1fch_A 87 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY----T 162 (368)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----S
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCchhhhhhcCcc----hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1708 PRPSAYKADALPS----KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAV 1783 (1956)
Q Consensus 1708 Pd~eay~~Ll~~~----Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAi 1783 (1956)
|. ........ ...........++.++ ..|++++|+..|+++++..|.. ..+.++..+|.++...|++++|+
T Consensus 163 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 163 PA---YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS-IDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp TT---TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cC---cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 77 22222000 0001111222456666 8999999999999999999992 12899999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1784 e~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.+|++++.+.|+++.++..+|.++...|++++|+..|++++++.|++..++..+|.++..+|++++|+.+|++++.+.|+
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-----------hhchhccccchhhhcccHHHHHHHHHhcc
Q psy8682 1864 T-----------HDGLTPHGLEPRAVKEMSDSIWYSLRGFH 1893 (1956)
Q Consensus 1864 n-----------~dA~~~LG~l~~~lg~~seAIws~Lr~Al 1893 (1956)
+ ..+|..+|.++..+|++.++. ..+++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l 357 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDL 357 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHTTCH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHHHHH
Confidence 8 789999999999999987766 4444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-28 Score=287.69 Aligned_cols=334 Identities=16% Similarity=0.154 Sum_probs=273.1
Q ss_pred CcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHH
Q psy8682 1505 VPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRN 1584 (1956)
Q Consensus 1505 v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeA 1584 (1956)
....+...++|++|++.+....... |. +...+. .++ ..+...+++++|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~---------------~~~~~~-------~l~--------~~~~~~~~~~~a 52 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PD---------------NTGVLL-------LLS--------SIHFQCRRLDRS 52 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TT---------------CHHHHH-------HHH--------HHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CC---------------CHHHHH-------HHH--------HHHHHcCCHHHH
Confidence 3466778899999999976543221 11 111222 122 233445677888
Q ss_pred HhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 1585 QRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664 (1956)
Q Consensus 1585 Ls~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeK 1664 (1956)
+.. +++++...|. ++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++
T Consensus 53 ~~~--~~~a~~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (388)
T 1w3b_A 53 AHF--STLAIKQNPL----LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp HHH--HHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred HHH--HHHHHhcCCC----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 877 7777766544 4558999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHH
Q psy8682 1665 CLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQ 1744 (1956)
Q Consensus 1665 ALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeE 1744 (1956)
+++.+|+...++..+|.++...|++++|+..|+++++. +|+ ...++..+|.++...|++++
T Consensus 127 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~---------------~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET----QPN---------------FAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHTTTCHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999988 665 34567778888888888888
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1745 VLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1745 Ale~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
|+..|+++++.+|++ ..++..+|.++...|++++|+..|++++.+.|+++.++..+|.++...|++++|+..|++++
T Consensus 188 A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNF---LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888887 88888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1825 QLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1825 eL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++.+++ ..+++++...+..
T Consensus 265 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~ 338 (388)
T 1w3b_A 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RLYRKALEVFPEF 338 (388)
T ss_dssp HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHTTSCTTC
T ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCc
Confidence 8888888888888888888888888888888888888888888888888888888887777 7777777765553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=287.35 Aligned_cols=331 Identities=17% Similarity=0.191 Sum_probs=298.4
Q ss_pred chhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHh
Q psy8682 1507 NTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQR 1586 (1956)
Q Consensus 1507 n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs 1586 (1956)
.++...+++++|+..+....... +. .... |..++ ..+...+++++|+.
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~~--p~---------------~~~~-------~~~lg--------~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQN--PL---------------LAEA-------YSNLG--------NVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TT---------------CHHH-------HHHHH--------HHHHHHTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CC---------------chHH-------HHHHH--------HHHHHCCCHHHHHH
Confidence 45677889999999876543221 11 1112 33333 34556678999999
Q ss_pred chhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy8682 1587 SSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCL 1666 (1956)
Q Consensus 1587 ~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKAL 1666 (1956)
. |++++.+.|++ ..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 89 ~--~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 89 H--YRHALRLKPDF----IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp H--HHHHHHHCTTC----HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred H--HHHHHHcCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8 99999886654 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1667 SIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1667 eLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
+.+|++..++..+|.++...|++++|+..|+++++. +|+ ...++..+|.++...|++++|+
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~---------------~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPN---------------FLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHTTTCTTHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---------------cHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999 666 4456788999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
..|++++..+|++ ..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.
T Consensus 224 ~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 224 AAYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
.|.+..++..+|.++...|++++|+.+|+++++++|++..++..+|.++...|++.+++ ..++.++...+.
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~p~ 371 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPT 371 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTT
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999998888 778877776554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=288.97 Aligned_cols=315 Identities=43% Similarity=0.752 Sum_probs=241.7
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHhc---hhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHH
Q psy8682 1549 EPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRS---SVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAI 1625 (1956)
Q Consensus 1549 d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs~---s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAI 1625 (1956)
...+|++++..|+.+...+ |+.+|+..... ..+.+++.+.+.+|..++..++.+|..+...|++++|+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~---------wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 85 (365)
T 4eqf_A 15 DTEFWDKMQAEWEEMARRN---------WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTI 85 (365)
T ss_dssp -----------------------------------------------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHhhhhhhhhhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHH
Confidence 5678999999999988433 99988876511 12566777788888767788999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy8682 1626 LYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQE 1705 (1956)
Q Consensus 1626 e~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e 1705 (1956)
.+|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.+|...|++++|+.+++++++.
T Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 162 (365)
T 4eqf_A 86 LFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--- 162 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1706 SNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1706 ~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
.|+ ....... .......+..+|.++...|++++|+.+|+++++..|.. ..+.++..+|.++...|++++|+.+
T Consensus 163 -~p~---~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 235 (365)
T 4eqf_A 163 -NPK---YKYLVKN--KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-IDPDLQTGLGVLFHLSGEFNRAIDA 235 (365)
T ss_dssp -CHH---HHCC---------------------CCHHHHHHHHHHHHHHHHSCSS-CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -Ccc---chHHHhh--hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-cCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666 2222200 01223455678999999999999999999999999992 2289999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-
Q psy8682 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT- 1864 (1956)
Q Consensus 1786 fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn- 1864 (1956)
|+++++..|+++.++..+|.++...|++++|+.+|+++++++|++..++..+|.+|..+|++++|+.+|++++++.|++
T Consensus 236 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -----------hhchhccccchhhhcccH
Q psy8682 1865 -----------HDGLTPHGLEPRAVKEMS 1882 (1956)
Q Consensus 1865 -----------~dA~~~LG~l~~~lg~~s 1882 (1956)
..+|..+|.++..+|+..
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 316 NQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp -----------CHHHHHHHHHHHHHTCHH
T ss_pred CCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 455666666666666553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=257.37 Aligned_cols=297 Identities=12% Similarity=0.070 Sum_probs=272.9
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+.-.++|++|+.. |++++...|.+ +.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|
T Consensus 12 ~~~~~g~~~~A~~~--~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 12 KLLAAGQLADALSQ--FHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHH--HHHHHhhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 44556789999998 99999876654 4599999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1654 QDPQAIAALSKCLSIEP---KNLEALMAI------------SICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdP---dnaeAl~~L------------A~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
++++|+..|+++++.+| ++..++..+ |.++...|++++|+..++++++. .|.
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--------- 152 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV----CVW--------- 152 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT---------
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCC---------
Confidence 99999999999999999 888888777 78999999999999999999998 665
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
...++..+|.++...|++++|+..++++++..|.+ +.++..+|.++...|++++|+..|+++++..|++..
T Consensus 153 ------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 223 (359)
T 3ieg_A 153 ------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223 (359)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH
Confidence 34567889999999999999999999999999998 999999999999999999999999999999999988
Q ss_pred HHH------------HHHHHHHHCCChHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1799 LWN------------RLGASLANGNRPEEAVEAYHTALQLSPGFVR----ARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1799 A~~------------nLG~ay~qlGryeEAie~yeKALeL~Pdnae----A~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
++. .+|.++...|++++|+..|+++++..|++.. ++..+|.++...|++++|+.+|+++++++|
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 654 4488899999999999999999999999874 467899999999999999999999999999
Q ss_pred CChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1863 ATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1863 dn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+++.++..+|.++...|++.+++ ..++.++...+..
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~-~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAI-QDYEAAQEHNEND 339 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTTC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCC
Confidence 99999999999999999998888 8888888877664
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-25 Score=254.35 Aligned_cols=313 Identities=14% Similarity=0.089 Sum_probs=273.1
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
++.+...+++++|++++....... +. +.. .|..++ ..+..++++++|+
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~--p~---------------~~~-------~~~~~a--------~~~~~~~~~~~A~ 57 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGD--PD---------------NYI-------AYYRRA--------TVFLAMGKSKAAL 57 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TT---------------CHH-------HHHHHH--------HHHHHHTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--cc---------------cHH-------HHHHHH--------HHHHHccCHHHHH
Confidence 356778899999999987653321 10 111 133333 3556678899999
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHH
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEP---DNAEVWLSL------------GISLA 1650 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldP---dnaeAl~~L------------A~ay~ 1650 (1956)
.. +++++.+.|.+ ..+++.+|.++...|++++|+..|+++++.+| ++..++..+ |.++.
T Consensus 58 ~~--~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (359)
T 3ieg_A 58 PD--LTKVIALKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF 131 (359)
T ss_dssp HH--HHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHhCCCc----chHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 99999886654 45999999999999999999999999999999 888888777 78999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHH
Q psy8682 1651 ENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730 (1956)
Q Consensus 1651 ~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~l 1730 (1956)
..|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++.. .|. ...++.
T Consensus 132 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~ 192 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL----KSD---------------NTEAFY 192 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CSC---------------CHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC---------------CHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 666 345678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQN------------GLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1731 nLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~------------~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
.+|.++...|++++|+..++++++..|.+ ..++. .+|.++...|++++|+..+++++...|+++.
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCccc---hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 89999999999999999999999999998 55443 4488899999999999999999999999874
Q ss_pred ----HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1799 ----LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1799 ----A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4667999999999999999999999999999999999999999999999999999999999999999988888765
Q ss_pred hhhh
Q psy8682 1875 PRAV 1878 (1956)
Q Consensus 1875 ~~~l 1878 (1956)
...+
T Consensus 350 ~~~~ 353 (359)
T 3ieg_A 350 QRLL 353 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=255.07 Aligned_cols=278 Identities=17% Similarity=0.107 Sum_probs=241.6
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-C
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-Q 1654 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-d 1654 (1956)
...++|++|+.. +++++...|.++. .+..++.++...|++++|+..++++++.+|+++.++..+|.++...| +
T Consensus 33 ~~~g~~~~A~~~--~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 33 YYNCDFKMCYKL--TSVVMEKDPFHAS----CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHTTCHHHHHHH--HHHHHHHCTTCTT----THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSC
T ss_pred HHcCCHHHHHHH--HHHHHHcCCCChh----hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhh
Confidence 344678888888 8888887777665 78888888899999999999999999999999999999999999999 8
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ 1734 (1956)
+++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++. .|. ....+..+|.
T Consensus 107 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~---------------~~~~~~~l~~ 167 (330)
T 3hym_B 107 NEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----MKG---------------CHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----TTT---------------CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----ccc---------------cHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988 555 2334566889
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHH
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR---------PDDSRLWNRLGA 1805 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~---------PdnaeA~~nLG~ 1805 (1956)
++...|++++|+.+++++++..|.+ +.++..+|.++...|++++|+..+++++... |..+.++..+|.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999999988 8889999999999999999999999999876 666788999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccch-hhhccc
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEP-RAVKEM 1881 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~-~~lg~~ 1881 (1956)
++...|++++|+.+|+++++..|++..++..+|.++..+|++++|+.+|+++++++|+++.++..+|.++ ...|+.
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999999999999999999999999999999999998888888876 344443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=252.16 Aligned_cols=276 Identities=14% Similarity=0.134 Sum_probs=259.0
Q ss_pred hccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEAL 1676 (1956)
Q Consensus 1597 ~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl 1676 (1956)
.+.++. .++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++
T Consensus 18 ~~~~~~----~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 93 (330)
T 3hym_B 18 LQENLD----VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSW 93 (330)
T ss_dssp --CCCT----THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred chhhHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHH
Confidence 344554 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1677 MAISICFTNEA-CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1677 ~~LA~aY~~lG-dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
..+|.++...| ++++|+.++++++.. +|. ...++..+|.++...|++++|+..++++++.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 154 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTL----EKT---------------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTT----CTT---------------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh----CCc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999 665 3456788999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--------
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS-------- 1827 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~-------- 1827 (1956)
.|.+ ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..
T Consensus 155 ~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 231 (330)
T 3hym_B 155 MKGC---HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231 (330)
T ss_dssp TTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc
Confidence 9998 88899999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1828 -PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1828 -PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
|....++..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++.+++ .++++++...+..
T Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~ 303 (330)
T 3hym_B 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV-DYFHTALGLRRDD 303 (330)
T ss_dssp TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH-HHHHTTTTTCSCC
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH-HHHHHHHccCCCc
Confidence 6677899999999999999999999999999999999999999999999999998888 8888888877654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-25 Score=263.07 Aligned_cols=297 Identities=12% Similarity=0.075 Sum_probs=263.8
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+...++|++|+.. |++++...|. ++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|
T Consensus 35 ~~~~~g~~~~A~~~--~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 35 KLLAAGQLADALSQ--FHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHH--HHHHHHhCCc----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 45556789999998 9999877655 45699999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1654 QDPQAIAALSKCLSIEPKNL---EALMAI------------SICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdna---eAl~~L------------A~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
++++|+..|+++++.+|++. .++..+ |.++...|++++|+..+++++.. .|.
T Consensus 109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--------- 175 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVW--------- 175 (450)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTT---------
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------
Confidence 99999999999999999988 766555 66699999999999999999998 665
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
...++..+|.+|...|++++|+..|+++++.+|.+ +.++..+|.+|...|++++|+..|++++...|++..
T Consensus 176 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 176 ------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246 (450)
T ss_dssp ------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH
Confidence 34567788999999999999999999999999988 889999999999999999999999999999999888
Q ss_pred HHHHH------------HHHHHHCCChHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1799 LWNRL------------GASLANGNRPEEAVEAYHTALQLSPGFV----RARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1799 A~~nL------------G~ay~qlGryeEAie~yeKALeL~Pdna----eA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
.+..+ |.++...|++++|+.+|+++++..|+++ .++..+|.++...|++++|+.++++++.++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 77666 8899999999999999999999999874 4788899999999999999999999999999
Q ss_pred CChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1863 ATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1863 dn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+++.++..+|.++...|++.+++ ..+++++.+.+..
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~ 362 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAI-QDYETAQEHNEND 362 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTSSSC
T ss_pred ccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCcch
Confidence 99999999999999999988887 7788887776664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=264.38 Aligned_cols=310 Identities=15% Similarity=0.088 Sum_probs=272.2
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
+..+...+++++|+.+|....... +. +... |..++ ..+..++++++|+
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~--p~---------------~~~~-------~~~l~--------~~~~~~g~~~~A~ 80 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGD--PD---------------NYIA-------YYRRA--------TVFLAMGKSKAAL 80 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TT---------------CHHH-------HHHHH--------HHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--Cc---------------cHHH-------HHHHH--------HHHHHCCCHHHHH
Confidence 356788899999999987653221 10 1122 33333 3455678899999
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHH
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA---EVWLSL------------GISLA 1650 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdna---eAl~~L------------A~ay~ 1650 (1956)
.. |++++...|.+ ..+++.+|.++...|++++|+..|+++++.+|++. .++..+ |.++.
T Consensus 81 ~~--~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 81 PD--LTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HH--HHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 99999886654 55999999999999999999999999999999988 776655 66799
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHH
Q psy8682 1651 ENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730 (1956)
Q Consensus 1651 ~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~l 1730 (1956)
..|++++|+..|+++++..|.+..++..+|.+|...|++++|+..|+++++. +|. ...++.
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------------~~~~~~ 215 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL----KND---------------NTEAFY 215 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH----HCS---------------CHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC---------------CHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 555 456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Q psy8682 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGL------------GVLFNLSDEYDKAVDCFRSALQVRPDDS- 1797 (1956)
Q Consensus 1731 nLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~L------------G~ly~~lGdyeEAie~fekALel~Pdna- 1797 (1956)
.+|.++...|++++|+..|+++++..|++ ...+..+ |.++...|++++|+.+|++++.+.|+++
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH
Confidence 89999999999999999999999999998 7766555 9999999999999999999999999985
Q ss_pred ---HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1798 ---RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1798 ---eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
.++..+|.++...|++++|+..+++++++.|++..++..+|.++...|++++|+.+|+++++++|+++.++..++.+
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998854
Q ss_pred h
Q psy8682 1875 P 1875 (1956)
Q Consensus 1875 ~ 1875 (1956)
.
T Consensus 373 ~ 373 (450)
T 2y4t_A 373 Q 373 (450)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=270.01 Aligned_cols=310 Identities=15% Similarity=0.092 Sum_probs=277.4
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
+..|...+++++|++++...... + . +... |..++ ..+...+++++|+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~---~---~------------~~~~-------~~~l~--------~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL---E---K------------SSDL-------LLCKA--------DTLFVRSRFIDVL 325 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG---G---G------------CHHH-------HHHHH--------HHHHHTTCHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC---C---c------------hHHH-------HHHHH--------HHHHHhcCHHHHH
Confidence 45677889999999997644322 1 1 2222 33333 3455667899999
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKC 1665 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKA 1665 (1956)
.. |++++...|.+.. ++..++.++...|++++|+..|+++++..|++..++..+|.+|...|++++|+..|+++
T Consensus 326 ~~--~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 326 AI--TTKILEIDPYNLD----VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HH--HHHHHHHCTTCCT----THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH--HHHHHHcCcccHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 98 9999988777666 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHH
Q psy8682 1666 LSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQV 1745 (1956)
Q Consensus 1666 LeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEA 1745 (1956)
++.+|.+..++..+|.+|...|++++|++.|+++++. .|+ ...++..+|.+|...|++++|
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------------~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL----FQG---------------THLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TTT---------------CSHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Ccc---------------chHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999998 554 345677899999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHCCChHHHHH
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDD-SRLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel------~Pdn-aeA~~nLG~ay~qlGryeEAie 1818 (1956)
+.+|+++++..|.+ +.++..+|.+|...|++++|+..|+++++. +|+. ..++..+|.+|...|++++|+.
T Consensus 461 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 461 NEYLQSSYALFQYD---PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999998 999999999999999999999999999998 5654 7899999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1819 AYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1819 ~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.|+++++..|++..++..+|.+|...|++++|+.+|+++++++|+++.++..++.+|.
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-25 Score=272.42 Aligned_cols=297 Identities=15% Similarity=0.100 Sum_probs=275.8
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
..+...+++++|+.. |++++.. + . +...++.+|..+...|++++|+..|+++++.+|++..++..++.++...
T Consensus 280 ~~~~~~g~~~~A~~~--~~~~~~~-~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 280 NKTSHEDELRRAEDY--LSSINGL-E---K-SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352 (597)
T ss_dssp CTTTTHHHHHHHHHH--HHTSTTG-G---G-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHH--HHHhhcC-C---c-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh
Confidence 455567889999988 7777765 2 2 6779999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
|++++|+..++++++..|++..++..+|.+|...|++++|+.+|+++++. +|. ...++..+
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------------~~~~~~~l 413 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM----DPQ---------------FGPAWIGF 413 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT---------------CHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCC---------------CHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 555 34567889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
+.+|...|++++|++.|+++++..|.+ ..++..+|.+|...|++++|+..|+++++..|.++.++..+|.+|...|+
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 999999999999999999999999988 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhh------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1813 PEEAVEAYHTALQL------SPGF-VRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1813 yeEAie~yeKALeL------~Pdn-aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
+++|+..|+++++. +|+. ..++..+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++.+++
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999998 6665 7899999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHhccccCCCC
Q psy8682 1886 WYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1886 ws~Lr~Al~l~gr~ 1899 (1956)
..+++++.+.+..
T Consensus 571 -~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 571 -THLHESLAISPNE 583 (597)
T ss_dssp -HHHHHHHHHCTTC
T ss_pred -HHHHHHHhcCCCC
Confidence 7788887776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=250.67 Aligned_cols=293 Identities=30% Similarity=0.501 Sum_probs=255.6
Q ss_pred HhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q psy8682 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672 (1956)
Q Consensus 1593 AlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn 1672 (1956)
.+.+.+.+|..+...++.+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 88 (327)
T 3cv0_A 9 DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 88 (327)
T ss_dssp TSCCCSSCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hccchhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC
Confidence 35566777866778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc-hhhhhHHHHHHH-HH-HHHhcCCHHHHHHHH
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS-KLTRLANHTLTF-RS-PLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~-Kl~e~a~a~lnL-A~-ay~~lGdyeEAle~L 1749 (1956)
..++..+|.++...|++++|+..+++++.. .|. ........ ...........+ +. ++...|++++|+.++
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLS----QPQ---YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----STT---TTTC--------------------CCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCc---cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 999999999999999999999999999999 666 22211000 000001111233 33 588899999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
+++++..|.+ ..++..+|.++...|++++|+.++++++...|+++.++..+|.++...|++++|+..|+++++..|+
T Consensus 162 ~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMNPND---AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------------ChhchhccccchhhhcccHHHHHHHHHhccccC
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA------------THDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPF 1896 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLdPd------------n~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~ 1896 (1956)
+..++..+|.++..+|++++|+.+|++++.+.|+ ++.++..+|.++..+|++.++. ..++.++...
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~ 316 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE-LTYAQNVEPF 316 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH-HHTTCCSHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhc
Confidence 9999999999999999999999999999999999 7889999999999999987776 5555554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=260.92 Aligned_cols=347 Identities=14% Similarity=0.041 Sum_probs=258.4
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
++.+...++|++|+.+|....... + +... |..++ ..+..+++|++|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~--p----------------~~~~-------~~~la--------~~~~~~g~~~~A~ 59 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK--E----------------DPVF-------YSNLS--------ACYVSVGDLKKVV 59 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC--C----------------CHHH-------HHHHH--------HHHHHHTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--c----------------cHHH-------HHhHH--------HHHHHHhhHHHHH
Confidence 356778899999999987554322 1 1112 22222 3445566788888
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------------------
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN--------------------------- 1638 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn--------------------------- 1638 (1956)
.. +++++...|.+ ..+++.+|.++...|++++|+..|++++...|.+
T Consensus 60 ~~--~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (514)
T 2gw1_A 60 EM--STKALELKPDY----SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI 133 (514)
T ss_dssp HH--HHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----
T ss_pred HH--HHHHhccChHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 77777765543 4478888888888888888888888887766522
Q ss_pred ----------------------------------------------------HHHHHHHHHHHHH---cCChHHHHHHHH
Q psy8682 1639 ----------------------------------------------------AEVWLSLGISLAE---NEQDPQAIAALS 1663 (1956)
Q Consensus 1639 ----------------------------------------------------aeAl~~LA~ay~~---lGdyeEALe~ye 1663 (1956)
..++..+|.++.. .|++++|+..|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred HHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 5556666666665 777777777777
Q ss_pred HHHH-----h--C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCc-------c--
Q psy8682 1664 KCLS-----I--E-------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP-------S-- 1720 (1956)
Q Consensus 1664 KALe-----L--d-------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~-------~-- 1720 (1956)
++++ + . |....++..+|.++...|++++|+.++++++.. +|....+..+... .
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHH
Confidence 7777 4 3 334556777777777777788887777777776 4431111110000 0
Q ss_pred ---------hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1721 ---------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1721 ---------Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
..+....++..+|.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..|+++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN---IFPYIQLACLAYRENKFDDCETLFSEAKR 366 (514)
T ss_dssp GGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC---SHHHHHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 013455677888888888899999999999998888887 77888888888888999999999999988
Q ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhcC
Q psy8682 1792 VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR------ARYNLGITCVH---LGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1792 l~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae------A~~~LA~ay~k---lGdyEEAie~yekALeLdP 1862 (1956)
..|+++.++..+|.++...|++++|+..|++++...|++.. ++..+|.++.. .|++++|+.+|++++.++|
T Consensus 367 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 88888888888999999999999999999998888777644 88888998888 8999999999999999988
Q ss_pred CChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1863 ATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1863 dn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+++.++..+|.++...|++.+++ ..++.++...+..
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAI-TLFEESADLARTM 482 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSSH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhcccc
Confidence 88888888888888888887777 7778887777664
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-23 Score=228.18 Aligned_cols=238 Identities=15% Similarity=0.142 Sum_probs=224.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN-------LEAL 1676 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn-------aeAl 1676 (1956)
.++.++.+|..++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++++.|++ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 56789999999999999999999999999999 999999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q psy8682 1677 MAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC 1756 (1956)
Q Consensus 1677 ~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~ 1756 (1956)
..+|.++...|++++|+.++++++.. .|. +.++...|++++|+..+++++...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~-----------------------~~~~~~~~~~~~a~~~~~~~~~~~ 135 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE----HRT-----------------------ADILTKLRNAEKELKKAEAEAYVN 135 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CCC-----------------------HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc----Cch-----------------------hHHHHHHhHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999998 665 356778889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHH
Q psy8682 1757 PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836 (1956)
Q Consensus 1757 P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~ 1836 (1956)
|.. ..++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+..|+++++.+|++..++..
T Consensus 136 ~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 136 PEK---AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp HHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 988 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc------CCChhchhccc
Q psy8682 1837 LGITCVHLGANTQAVEHFLTALNQQ------AATHDGLTPHG 1872 (1956)
Q Consensus 1837 LA~ay~klGdyEEAie~yekALeLd------Pdn~dA~~~LG 1872 (1956)
+|.++..+|++++|+.+|+++++++ |++..++..++
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 9999999999999999999999999 77665554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-23 Score=253.91 Aligned_cols=285 Identities=13% Similarity=0.063 Sum_probs=248.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.++.++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchh---------------------------------------------------
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSA--------------------------------------------------- 1712 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~ea--------------------------------------------------- 1712 (1956)
...|++++|+..|+ ++.. +|+...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL----NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999885 6654 333000
Q ss_pred ---------------------------------------h-------hhhcCcc-----hhhhhHHHHHHHHHHHHhcCC
Q psy8682 1713 ---------------------------------------Y-------KADALPS-----KLTRLANHTLTFRSPLSSREI 1741 (1956)
Q Consensus 1713 ---------------------------------------y-------~~Ll~~~-----Kl~e~a~a~lnLA~ay~~lGd 1741 (1956)
+ ..+.... -....+.++..+|.++...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 0 0000000 001124467888999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Q psy8682 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821 (1956)
Q Consensus 1742 yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~ye 1821 (1956)
+++|+..++++++..|. ..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|+
T Consensus 259 ~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHHHCCC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999887 67899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1822 KALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
++++.+|++..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++.+++ ..+..++...+.
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI-KQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998887 777777666543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-23 Score=251.93 Aligned_cols=297 Identities=15% Similarity=0.133 Sum_probs=256.3
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
..+.-.++|++|+.. |++++...|.+ +.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...
T Consensus 33 ~~~~~~g~~~~A~~~--~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKY--YQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHTTCCC-CHHH--HHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHH--HHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 455667889999998 99999887665 459999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHH---------------------------------------------------------------------
Q psy8682 1653 EQDPQAIAALS--------------------------------------------------------------------- 1663 (1956)
Q Consensus 1653 GdyeEALe~ye--------------------------------------------------------------------- 1663 (1956)
|++++|+..|+
T Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 99888887663
Q ss_pred ----------------------------------------HHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1664 ----------------------------------------KCLSIEPKNLE-------ALMAISICFTNEACLHDALDTL 1696 (1956)
Q Consensus 1664 ----------------------------------------KALeLdPdnae-------Al~~LA~aY~~lGdydEALe~l 1696 (1956)
++++.+|++.. ++..+|.++...|++++|+..+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 22333455433 3556666777777777777777
Q ss_pred HHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q psy8682 1697 KDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776 (1956)
Q Consensus 1697 eKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l 1776 (1956)
++++.. +|+ ..++..+|.++...|++++|+.+++++++..|.+ +.++..+|.++...
T Consensus 267 ~~~~~~----~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 267 QESINL----HPT----------------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY---PPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHH----CCC----------------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT
T ss_pred HHHHhc----CCC----------------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhc
Confidence 777776 433 4567789999999999999999999999999998 99999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLT 1856 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yek 1856 (1956)
|++++|+..|++++...|++..++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+.+|++
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChhchhccc------cchhhh----------cccHHHHHHHHHhccccCCCC
Q psy8682 1857 ALNQQAATHDGLTPHG------LEPRAV----------KEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1857 ALeLdPdn~dA~~~LG------~l~~~l----------g~~seAIws~Lr~Al~l~gr~ 1899 (1956)
++++.|++...+..+| .++... |++.+++ ..+++++...+..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI-KLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH-HHHHHHHHHCTTC
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH-HHHHHHHHhCCCC
Confidence 9999999888777664 666667 8887777 7788887776654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=243.17 Aligned_cols=262 Identities=17% Similarity=0.146 Sum_probs=239.9
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+...++|++|+.. |++++...|. +..+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|
T Consensus 73 ~~~~~g~~~~A~~~--~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 73 RRLQEGDLPNAVLL--FEAAVQQDPK----HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHSCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHH--HHHHHHhCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 44556789999998 9999987655 45599999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALM----------------AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~----------------~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
++++|+..|+++++..|++...+. .++.++ ..|++++|+.+++++++. +|. .
T Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~----~p~---~---- 214 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL----DPT---S---- 214 (368)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH----STT---S----
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh----CcC---c----
Confidence 999999999999999998876654 466666 999999999999999999 665 1
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
.....+..+|.++...|++++|+.+|+++++..|.+ +.++..+|.++...|++++|+..|++++++.|++.
T Consensus 215 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 215 ------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 135677889999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-----------VRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-----------aeA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
.++..+|.++..+|++++|+.+|++++++.|++ ..++..+|.++..+|++++|..+++++++..+
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 999999999999999999999999999999887 89999999999999999999999998877643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=250.11 Aligned_cols=345 Identities=13% Similarity=0.105 Sum_probs=263.9
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
+.++...|++++|++.+............... +. .....|..++ .++..+++|++|+
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~-----------~~----~~~~~~~nla--------~~y~~~g~~~~A~ 114 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQA-----------EI----RSLVTWGNYA--------WVYYHMGRLSDVQ 114 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC-----------TT----TTHHHHHHHH--------HHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc-----------ch----HHHHHHHHHH--------HHHHHcCChHHHH
Confidence 35688889999999998654332200000000 00 0011233333 4667788999999
Q ss_pred hchhhHhHhhhhccCC----CccHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChH
Q psy8682 1586 RSSVSMHEYTFAEDNP----MQNETNAFALGQEKLRQ--GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE---NEQDP 1656 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP----~~daeall~LG~aylk~--GdydEAIe~fekALeldPdnaeAl~~LA~ay~~---lGdye 1656 (1956)
.. |++++.+.+..+ ...+.++..+|.++... ++|++|+.+|+++++++|+++.++..+|.++.. .++++
T Consensus 115 ~~--~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~ 192 (472)
T 4g1t_A 115 IY--VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQ 192 (472)
T ss_dssp HH--HHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCC
T ss_pred HH--HHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHH
Confidence 88 999988765422 12577888898887765 479999999999999999999999999988654 57889
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1657 QAIAALSKCLSIEPKNLEALMAISICFTN----EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1657 EALe~yeKALeLdPdnaeAl~~LA~aY~~----lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
+|++.|+++++++|++..++..+|..+.. .+++++|..++++++.. +|. ...++..+
T Consensus 193 ~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~---------------~~~~~~~l 253 (472)
T 4g1t_A 193 NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APG---------------VTDVLRSA 253 (472)
T ss_dssp CTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----CSS---------------CHHHHHHH
T ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----Ccc---------------HHHHHHHH
Confidence 99999999999999999999988877655 46788999999999998 666 44567889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-------------------DEYDKAVDCFRSALQVR 1793 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-------------------GdyeEAie~fekALel~ 1793 (1956)
|.+|...|++++|+..++++++..|++ +.++..+|.+|... +.+++|+..|++++.++
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 330 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNN---AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN 330 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999 99999999988643 34678999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHh---------
Q psy8682 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR---ARYNLGIT-CVHLGANTQAVEHFLTALNQ--------- 1860 (1956)
Q Consensus 1794 PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae---A~~~LA~a-y~klGdyEEAie~yekALeL--------- 1860 (1956)
|.+..++..+|.++...|++++|+.+|++++++.|+... .+..+|.+ +...|++++|+.+|++++++
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999999999999999999999999999999887654 45667654 45789999999999998866
Q ss_pred ---------------cCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1861 ---------------QAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1861 ---------------dPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
+|+++.++..+|.++...|++.+|+ .++++|+..-+.
T Consensus 411 ~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~-~~y~kALe~~~~ 462 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD-EDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence 5667789999999999999999988 788888776544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-23 Score=246.95 Aligned_cols=305 Identities=11% Similarity=-0.002 Sum_probs=272.7
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
..+...++|++|+.. |++++...| ++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 14 ~~~~~~g~~~~A~~~--~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKY--YNWALELKE-----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHTSCHHHHHHH--HHHHHHHCC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHH--HHHHHhcCc-----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 355667899999998 999998764 3669999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCC------------------------------------------------------------
Q psy8682 1653 EQDPQAIAALSKCLSIEPKN------------------------------------------------------------ 1672 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdn------------------------------------------------------------ 1672 (1956)
|++++|+..|+++++..|.+
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999999887632
Q ss_pred -------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----cCCCCCCCchhhhhhcCcchhhhh
Q psy8682 1673 -------------------LEALMAISICFTN---EACLHDALDTLKDKIR-----PGQESNPRPSAYKADALPSKLTRL 1725 (1956)
Q Consensus 1673 -------------------aeAl~~LA~aY~~---lGdydEALe~leKALe-----lg~e~dPd~eay~~Ll~~~Kl~e~ 1725 (1956)
..++..+|.++.. .|++++|+.++++++. . ..+|+ ... ..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~---~~~-----~~~~~ 236 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL--DKNNE---DEK-----LKEKL 236 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT--TTSTT---CHH-----HHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh--ccCcc---ccc-----cChHH
Confidence 6667778887776 8999999999999998 3 11222 000 01456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
..++..+|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 778899999999999999999999999999886 7899999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++.+++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHhccccCCCC
Q psy8682 1886 WYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1886 ws~Lr~Al~l~gr~ 1899 (1956)
..+..++...+..
T Consensus 393 -~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 393 -KQYDLAIELENKL 405 (514)
T ss_dssp -HHHHHHHHHHHTS
T ss_pred -HHHHHHHHhhhcc
Confidence 6677776655443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=252.67 Aligned_cols=250 Identities=12% Similarity=0.027 Sum_probs=234.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ-DPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd-yeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
...++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..+|+++|.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 566999999999999999999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCC
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID 1762 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~ 1762 (1956)
+..+|++++|+.+|++++++ +|+ ...++.++|.++...|++++|+.+|+++++++|.+
T Consensus 176 ~~~~g~~~eAl~~~~kal~l----dP~---------------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--- 233 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ----DAK---------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--- 233 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---
T ss_pred HHHccCHHHHHHHHHHHHHh----Ccc---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---
Confidence 99999999999999999999 777 45678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHCC--ChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1763 PDVQNGLGVLFNL-SDEYDKA-----VDCFRSALQVRPDDSRLWNRLGASLANGN--RPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1763 a~a~~~LG~ly~~-lGdyeEA-----ie~fekALel~PdnaeA~~nLG~ay~qlG--ryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
..+|+++|.++.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++++|+..++++ +.+|++..++
T Consensus 234 ~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al 312 (382)
T 2h6f_A 234 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLI 312 (382)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHH
Confidence 9999999999999 5555788 59999999999999999999999999988 699999999998 9999999999
Q ss_pred HHHHHHHHHcC---------CHHHHHHHHHHH-HHhcCCChhchhccccchh
Q psy8682 1835 YNLGITCVHLG---------ANTQAVEHFLTA-LNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1835 ~~LA~ay~klG---------dyEEAie~yekA-LeLdPdn~dA~~~LG~l~~ 1876 (1956)
..||.+|.++| .+++|+.+|+++ ++++|.....|..++..+.
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 99999999985 259999999999 9999999998888876554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=230.62 Aligned_cols=251 Identities=11% Similarity=0.095 Sum_probs=224.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN----LEALMAI 1679 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn----aeAl~~L 1679 (1956)
+++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++ .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3458899999999999999999999999999999999999999999999999999999999999 4433 4568999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1680 SICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1680 A~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
|.++...|++++|+.+++++++. +|. ...++..+|.++...|++++|+.+|+++++.+|.+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~----~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDR----DTT---------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----STT---------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc----Ccc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999999 666 34567889999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhC---CC----
Q psy8682 1760 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR---PEEAVEAYHTALQLS---PG---- 1829 (1956)
Q Consensus 1760 ~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr---yeEAie~yeKALeL~---Pd---- 1829 (1956)
..++..+|......+++++|+..|+++++..|++..++..+|.++...|+ +++|+..|+++++.. |+
T Consensus 142 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 142 ---PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 99999999445556799999999999999999999999999999999999 999999999999875 44
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1830 -FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1830 -naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
...++..+|.+|...|++++|+.+|+++++++|+++.++-.++.+...
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 246899999999999999999999999999999999998888775543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=233.02 Aligned_cols=261 Identities=15% Similarity=0.130 Sum_probs=238.1
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
...++|++|+.. |++++...|. +..+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++
T Consensus 32 ~~~~~~~~A~~~--~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 32 LKLANLAEAALA--FEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHTTCHHHHHHH--HHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhccHHHHHHH--HHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence 345688999988 8888877655 4569999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAI--------------SI-CFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS 1720 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~L--------------A~-aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~ 1720 (1956)
++|+..|+++++..|.+...+..+ +. ++...|++++|+.+++++++. .|.
T Consensus 106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~----------- 170 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM----NPN----------- 170 (327)
T ss_dssp HHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH----STT-----------
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh----CCC-----------
Confidence 999999999999999988777776 66 688899999999999999998 555
Q ss_pred hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLW 1800 (1956)
Q Consensus 1721 Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~ 1800 (1956)
...++..+|.++...|++++|+.+++++++..|.+ ..++..+|.++...|++++|+..|+++++..|++..++
T Consensus 171 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 171 ----DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 34567889999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1801 NRLGASLANGNRPEEAVEAYHTALQLSPG------------FVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1801 ~nLG~ay~qlGryeEAie~yeKALeL~Pd------------naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
..+|.++...|++++|+..|++++...|+ +..++..+|.++..+|++++|..++++++...|+.
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999 89999999999999999999999999999887763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-23 Score=241.49 Aligned_cols=260 Identities=17% Similarity=0.145 Sum_probs=229.1
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+.-.++|++|+.. |++++...|.+ +.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.+|...|
T Consensus 74 ~~~~~g~~~~A~~~--~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 74 KRLKEGDLPVTILF--MEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHTCHHHHHHH--HHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHH--HHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 34456789999998 99999886654 5599999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhh
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMA----------ISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLT 1723 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~----------LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~ 1723 (1956)
++++|+..|++++++.|++..++.. +|.++...|++++|+.+++++++. +|. .
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~---~---------- 210 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----NGD---M---------- 210 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH----SCS---S----------
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh----CcC---c----------
Confidence 9999999999999999876665554 499999999999999999999999 665 1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
....++..+|.++...|++++|+.+|+++++..|.+ +.++..+|.+|...|++++|+.+|++++++.|+++.++..+
T Consensus 211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 287 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287 (365)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 135578889999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPG------------FVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~Pd------------naeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
|.+|..+|++++|+.+|++++++.|+ +..+|..++.++..+|+.+.|..+..+.+.
T Consensus 288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999999999999999999999877 357899999999999999998877766443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-20 Score=235.74 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=131.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 754 CFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRAR 833 (1956)
Q Consensus 754 lFerALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErAR 833 (1956)
+|+++++.+|.+...|..++..+. .++ ..+|+.+|++++..+|.+..+|..|+.++.+.|++++|+
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~~~-------~~~-------~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~ 66 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIREAQ-------NQP-------IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVE 66 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHHHH-------SSC-------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChhhHhhhCCCCHHHHHHHHHHHH-------hCC-------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 478999999999999999997532 222 557899999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCHHHHHHHHHHHH-HcCChHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCC
Q psy8682 834 SIYERALDVDHRNITLWLKYTELEM-RNRQVNHARN----LWDRAVTI---LPRANQFWYKYTYMEEM---------LEN 896 (1956)
Q Consensus 834 sIfERALs~~Pk~~dLWl~YadfE~-k~gnierARs----LFERAL~~---~Pks~~LW~kYidfE~k---------~Gd 896 (1956)
.+|+|+|...| +.++|..|+.++. ..|+++.||. +|++++.. .|.+..+|..|+.||.+ .|+
T Consensus 67 ~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 67 KLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp HHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred HHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 99999999999 6899999998764 4677766655 89999875 45668999999999987 789
Q ss_pred HHHHHHHHHhhc--cCc--hHHHHHHHHhhcc
Q psy8682 897 VAGKLFVFHRDS--ISQ--VTLWLGALTLSLE 924 (1956)
Q Consensus 897 ~e~aR~VfERAL--~~~--~~LWl~Yi~fEle 924 (1956)
.++||.+|+|++ |.. ..+|..|..|+..
T Consensus 146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 999999999999 322 4688888766543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=233.89 Aligned_cols=342 Identities=15% Similarity=0.096 Sum_probs=264.9
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhcc------CCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCC
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAED------NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE--------PDN 1638 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~------NP~~daeall~LG~aylk~GdydEAIe~fekALeld--------Pdn 1638 (1956)
.++..+++|++|+.. |++++++.+. +|. .+.++.++|.+|...|++++|+.+|++++++. +..
T Consensus 59 ~~~~~~G~~~eAl~~--~~kAl~~~~~~~~~~~~~~-~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 59 YLKHLKGQNEAALEC--LRKAEELIQQEHADQAEIR-SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHTTCHHHHHHH--HHHHHHHHHHHSGGGCTTT-THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHCCCHHHHHHH--HHHHHHHHHhcCccccchH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 345567899999998 9999887432 344 67789999999999999999999999999863 456
Q ss_pred HHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCCCchhh
Q psy8682 1639 AEVWLSLGISLAEN--EQDPQAIAALSKCLSIEPKNLEALMAISICFTN---EACLHDALDTLKDKIRPGQESNPRPSAY 1713 (1956)
Q Consensus 1639 aeAl~~LA~ay~~l--GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~---lGdydEALe~leKALelg~e~dPd~eay 1713 (1956)
+.++..+|.++... ++|++|+.+|+++++++|+++.++..++.++.. .+++++|++.+++++++ +|+
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l----~p~---- 207 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL----NPD---- 207 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH----CSS----
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc----CCc----
Confidence 78899998887765 479999999999999999999999999988654 57788999999999999 777
Q ss_pred hhhcCcchhhhhHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1714 KADALPSKLTRLANHTLTFRS----PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1714 ~~Ll~~~Kl~e~a~a~lnLA~----ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
...++..+|. ++...+++++|..++++++..+|.. ..++..+|.+|...|++++|+..|+++
T Consensus 208 -----------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 208 -----------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV---TDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp -----------CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH---HHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 2223344444 4445678899999999999999999 999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHC-------------------CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q psy8682 1790 LQVRPDDSRLWNRLGASLANG-------------------NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~ql-------------------GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA 1850 (1956)
++..|+++.++..+|.+|... +.+++|+..|+++++++|.+..++..+|.++...|++++|
T Consensus 274 l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHH
Confidence 999999999999999998643 3467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChh---chhccccch-hhhcccHHHHHHHHHhccccCCCCcccccccCcchhHHHHHHhhcCCCCCC
Q psy8682 1851 VEHFLTALNQQAATHD---GLTPHGLEP-RAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEWDQEKSRAHDCSDDDDD 1926 (1956)
Q Consensus 1851 ie~yekALeLdPdn~d---A~~~LG~l~-~~lg~~seAIws~Lr~Al~l~gr~~~al~Laq~~~~~~~~Ra~~~~~dde~ 1926 (1956)
+.+|++++.++|++.. .+..+|.++ ...|++.+|+ .++.+++.+.++.......... ...... ..+...+.+
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai-~~y~kal~i~~~~~~~~~~~~~-l~~~~~--~~l~~~p~~ 429 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI-HHFIEGVKINQKSREKEKMKDK-LQKIAK--MRLSKNGAD 429 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH-HHHHHHHHSCCCCHHHHHHHHH-HHHHHH--HHHHHCC-C
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCcccHHHHHHHHH-HHHHHH--HHHHhCCCC
Confidence 9999999999987654 355666544 4567777777 7788888877664221111000 000001 112223455
Q ss_pred CCCcchhHHHHHHHhhh
Q psy8682 1927 PSGYQPCTKLHNLSGVL 1943 (1956)
Q Consensus 1927 peg~q~~~kL~~lsG~l 1943 (1956)
+..+..+..++...|-.
T Consensus 430 ~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKM 446 (472)
T ss_dssp TTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 66666666666665543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=215.84 Aligned_cols=209 Identities=21% Similarity=0.244 Sum_probs=169.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
++.+++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34578888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
...+ ... +. .....|++++|+..|+++++++|++ +
T Consensus 84 ~~~~------------~~~-----~~-------------------------~~~~~g~~~~A~~~~~~al~~~P~~---~ 118 (217)
T 2pl2_A 84 VALY------------RQA-----ED-------------------------RERGKGYLEQALSVLKDAERVNPRY---A 118 (217)
T ss_dssp HHHH------------HTC-----SS-------------------------HHHHHHHHHHHHHHHHHHHHHCTTC---H
T ss_pred HHhh------------hhh-----hh-------------------------hcccccCHHHHHHHHHHHHHhCccc---H
Confidence 6542 001 00 1223589999999999999999999 9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
.++..+|.++..+|++++|+..|+++++++ +++.++.++|.++..+|++++|+..|+++++++|++..++..+|.++..
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q psy8682 1844 LGANTQAVEHFLTAL 1858 (1956)
Q Consensus 1844 lGdyEEAie~yekAL 1858 (1956)
+|++++|+..|+++-
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=232.86 Aligned_cols=295 Identities=13% Similarity=0.063 Sum_probs=250.7
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLGI 1647 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel------dPdnaeAl~~LA~ 1647 (1956)
.....++|++|+.. |++++.+.|.++...+.+++.+|.++...|++++|+.+|++++.. .|..+.++..+|.
T Consensus 18 ~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 18 RLCKSGDCRAGVSF--FEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHH--HHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45556789999998 999999877776545678999999999999999999999999877 3445778999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHh
Q psy8682 1648 SLAENEQDPQAIAALSKCLSIEPKN------LEALMAISICFTNEAC--------------------LHDALDTLKDKIR 1701 (1956)
Q Consensus 1648 ay~~lGdyeEALe~yeKALeLdPdn------aeAl~~LA~aY~~lGd--------------------ydEALe~leKALe 1701 (1956)
++...|++++|+.++++++++.+.. ..++..+|.+|...|+ +++|+.++++++.
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986543 4588999999999999 9999999999988
Q ss_pred cCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCC
Q psy8682 1702 PGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDE 1778 (1956)
Q Consensus 1702 lg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGd 1778 (1956)
+ ..... ..+....++..+|.++...|++++|+.++++++++.+.. .....++..+|.++...|+
T Consensus 176 ~----------~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 176 L----------VTALG---DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp H----------HHHTT---CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred H----------HHhcc---CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 7 33322 124566788999999999999999999999999886654 1123489999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCC
Q psy8682 1779 YDKAVDCFRSALQVRPDD------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1779 yeEAie~fekALel~Pdn------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay~klGd 1846 (1956)
+++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|..+|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999999999887655 6789999999999999999999999999875433 6689999999999999
Q ss_pred HHHHHHHHHHHHHhcCCC------hhchhccccchhhhcccHH
Q psy8682 1847 NTQAVEHFLTALNQQAAT------HDGLTPHGLEPRAVKEMSD 1883 (1956)
Q Consensus 1847 yEEAie~yekALeLdPdn------~dA~~~LG~l~~~lg~~se 1883 (1956)
+++|+.+|++++++.+.. ..++..+|.++...|+...
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999999999985543 4577778887777776643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=227.93 Aligned_cols=283 Identities=14% Similarity=0.111 Sum_probs=243.3
Q ss_pred CCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------C
Q psy8682 1601 PMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAENEQDPQAIAALSKCLSIE------P 1670 (1956)
Q Consensus 1601 P~~daeall~LG~aylk~GdydEAIe~fekALeldPdn----aeAl~~LA~ay~~lGdyeEALe~yeKALeLd------P 1670 (1956)
+...+..++.+|..++..|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+.+|++++.+. |
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 33467789999999999999999999999999999998 4688999999999999999999999998873 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCC---------
Q psy8682 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREI--------- 1741 (1956)
Q Consensus 1671 dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGd--------- 1741 (1956)
....++..+|.+|...|++++|+.++++++.+ .| .... ......++..+|.++...|+
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~------~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 151 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI----SR------ELND---KVGEARALYNLGNVYHAKGKSFGCPGPQD 151 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HH------HHTC---HHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HH------hccc---ccchHHHHHHHHHHHHHcCCcccccccch
Confidence 45678999999999999999999999999998 22 2221 13456788999999999999
Q ss_pred -----------HHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHH
Q psy8682 1742 -----------HQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS------RLWN 1801 (1956)
Q Consensus 1742 -----------yeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna------eA~~ 1801 (1956)
+++|+.++.+++.+.+.. .....++..+|.++...|++++|+.++++++.+.+... .++.
T Consensus 152 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 231 (406)
T 3sf4_A 152 VGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 231 (406)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999998873221 11256899999999999999999999999998865443 4899
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------hhchh
Q psy8682 1802 RLGASLANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITCVHLGANTQAVEHFLTALNQQAAT------HDGLT 1869 (1956)
Q Consensus 1802 nLG~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn------~dA~~ 1869 (1956)
.+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+.. ..++.
T Consensus 232 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (406)
T 3sf4_A 232 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACW 311 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999999999999886654 6789999999999999999999999999997765 56899
Q ss_pred ccccchhhhcccHHHHHHHHHhccccCC
Q psy8682 1870 PHGLEPRAVKEMSDSIWYSLRGFHPPFG 1897 (1956)
Q Consensus 1870 ~LG~l~~~lg~~seAIws~Lr~Al~l~g 1897 (1956)
.+|.++...|++.+++ .++..++.+..
T Consensus 312 ~la~~~~~~g~~~~A~-~~~~~al~~~~ 338 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAM-HFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHTCHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHHHHH
Confidence 9999999999998887 77777766643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=212.01 Aligned_cols=197 Identities=18% Similarity=0.179 Sum_probs=161.8
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.-.++|++|+.. |+++++.+|.++ .+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...+..
T Consensus 16 ~~~g~~~~A~~~--~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 16 YALGRYDAALTL--FERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ 89 (217)
T ss_dssp HHTTCHHHHHHH--HHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHH--HHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Confidence 345688999998 999998877655 49999999999999999999999999999999999999999999876211
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
... .+...|++++|+..+++++++ +|+ ...++..+|.+
T Consensus 90 -------------~~~----------~~~~~g~~~~A~~~~~~al~~----~P~---------------~~~~~~~lg~~ 127 (217)
T 2pl2_A 90 -------------AED----------RERGKGYLEQALSVLKDAERV----NPR---------------YAPLHLQRGLV 127 (217)
T ss_dssp -------------CSS----------HHHHHHHHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHH
T ss_pred -------------hhh----------hcccccCHHHHHHHHHHHHHh----Ccc---------------cHHHHHHHHHH
Confidence 011 233568899999999999999 776 45567899999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
+...|++++|+..|+++++++ ++ +.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~-~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE-DT---PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHcCChHHHHHHHHHHHhcc-cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999999999 77 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8682 1816 AVEAYHTAL 1824 (1956)
Q Consensus 1816 Aie~yeKAL 1824 (1956)
|+..|+++-
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 999998864
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=238.48 Aligned_cols=226 Identities=12% Similarity=0.056 Sum_probs=214.3
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCCC
Q psy8682 1631 AAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEAC-LHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1631 ALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGd-ydEALe~leKALelg~e~dPd 1709 (1956)
++..+|++..++..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|++++.+ +|+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~ 164 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPK 164 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTT
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCC
Confidence 4567888999999999999999999999999999999999999999999999999997 99999999999999 777
Q ss_pred chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1710 PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1710 ~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
...+++++|.++..+|++++|+..|+++++++|++ ..+|+++|.++..+|++++|+.+|+++
T Consensus 165 ---------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 165 ---------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---YHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp ---------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45678999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH-CCChHHH-----HHHHHHHHhhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhc
Q psy8682 1790 LQVRPDDSRLWNRLGASLAN-GNRPEEA-----VEAYHTALQLSPGFVRARYNLGITCVHLG--ANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~q-lGryeEA-----ie~yeKALeL~PdnaeA~~~LA~ay~klG--dyEEAie~yekALeLd 1861 (1956)
++++|++..+|+++|.++.. .|.+++| +.+|+++++++|++..+|+++|.++...| ++++|++.++++ +.+
T Consensus 227 l~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 227 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred HHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 99999999999999999999 5665888 59999999999999999999999999988 699999999998 999
Q ss_pred CCChhchhccccchhhhc
Q psy8682 1862 AATHDGLTPHGLEPRAVK 1879 (1956)
Q Consensus 1862 Pdn~dA~~~LG~l~~~lg 1879 (1956)
|+++.++..+|.++..++
T Consensus 306 p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 306 HSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999998875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=251.08 Aligned_cols=252 Identities=10% Similarity=0.069 Sum_probs=210.2
Q ss_pred cccccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHH-HHHHHHH
Q psy8682 681 AHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAV-DCFRSAL 759 (1956)
Q Consensus 681 ~~k~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkAr-elFerAL 759 (1956)
-++...+|..|++.++.. ..........+++..+|++|+..+|. ++++|+.++.++...|+.+.|+ ++|++|+
T Consensus 298 ~~~ql~lW~~yi~fEk~~---~~~l~~~~~~~Rv~~~Ye~aL~~~p~---~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDN---KLELSDDLHKARMTYVYMQAAQHVCF---APEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp CHHHHHHHHHHHHHHHTC---TTCCCHHHHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC---CccccchhhHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 355689999999998841 11111112456788999999999998 8999999999999999999996 9999999
Q ss_pred hhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhc-----------CC-----------CHHHHH
Q psy8682 760 QVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKN-----------RM-----------VISNWI 817 (1956)
Q Consensus 760 kkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~-----------~~-----------s~~lWl 817 (1956)
..+|.+..+|+.|+.+.. ..++ .++||.+|++++... |. ...+|+
T Consensus 372 ~~~P~s~~Lwl~~a~~ee------~~~~-------~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 372 QCIPNSAVLAFSLSEQYE------LNTK-------IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp HHCTTCHHHHHHHHHHHH------HTTC-------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHH------HhCC-------HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 999999999999997765 2233 456777788777642 22 245899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 818 KYAQWEESQKQVDRARSIYERALDV-DHRNITLWLKYTELEMRNRQ-VNHARNLWDRAVTILPRANQFWYKYTYMEEMLE 895 (1956)
Q Consensus 818 kYAqfE~~~Gd~ErARsIfERALs~-~Pk~~dLWl~YadfE~k~gn-ierARsLFERAL~~~Pks~~LW~kYidfE~k~G 895 (1956)
.|+++|.+.|+.++||.||++|+.. .+....+|+.++.+|.+.++ +++||.||+++++.+|+...+|..|++||...|
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 9999999999999999999999987 55668999999999999865 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhc---c---CchHHHHHHHHhhcccccchHHHHHHHHHHHhccccCccceeee
Q psy8682 896 NVAGKLFVFHRDS---I---SQVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECCCGQVVSTV 953 (1956)
Q Consensus 896 d~e~aR~VfERAL---~---~~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~~g~~~~~~ 953 (1956)
+.++||.+|+||+ + ....+|..|++||.+++ +.....+..+|.++.||-.+-++..
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G--~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG--SLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 9999999999999 3 35689999999999965 5677888899999999865444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=229.29 Aligned_cols=281 Identities=13% Similarity=0.112 Sum_probs=245.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA----EVWLSLGISLAENEQDPQAIAALSKCLSI------EPKNL 1673 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdna----eAl~~LA~ay~~lGdyeEALe~yeKALeL------dPdna 1673 (1956)
.+..++.+|..++..|++++|+.+|+++++..|++. .++..+|.+|...|++++|+.+|++++++ .|...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 567888999999999999999999999999999986 58999999999999999999999999998 46677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCC------------
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREI------------ 1741 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGd------------ 1741 (1956)
.++..+|.+|...|++++|+.++++++.. ..... ..+....++..+|.++...|+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 193 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTL----------ARQLG---DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHT---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HHHhh---chHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence 88999999999999999999999999988 33322 124567788999999999999
Q ss_pred -----HHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHH
Q psy8682 1742 -----HQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS------RLWNRLGASL 1807 (1956)
Q Consensus 1742 -----yeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna------eA~~nLG~ay 1807 (1956)
+++|+.++++++++.+.. .....++..+|.+|...|++++|+.+|++++++.+... .++..+|.+|
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 999999999998864321 11256899999999999999999999999999876432 3899999999
Q ss_pred HHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------hhchhccccch
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITCVHLGANTQAVEHFLTALNQQAAT------HDGLTPHGLEP 1875 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn------~dA~~~LG~l~ 1875 (1956)
..+|++++|+.+|++++.+.+.. ..++..+|.++..+|++++|+.+|++++.+.+.. ..++..+|.++
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 99999999999999999986643 6789999999999999999999999999987654 34899999999
Q ss_pred hhhcccHHHHHHHHHhccccCCC
Q psy8682 1876 RAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1876 ~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
...|++.+++ .+++.++.+...
T Consensus 354 ~~~g~~~~A~-~~~~~al~~~~~ 375 (411)
T 4a1s_A 354 SAIGGHERAL-KYAEQHLQLAXX 375 (411)
T ss_dssp HHTTCHHHHH-HHHHHHHHHCCH
T ss_pred HHhccHHHHH-HHHHHHHHHHhh
Confidence 9999998887 888888777765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=217.40 Aligned_cols=281 Identities=15% Similarity=0.125 Sum_probs=238.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAENEQDPQAIAALSKCLSI------EPKNL 1673 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn----aeAl~~LA~ay~~lGdyeEALe~yeKALeL------dPdna 1673 (1956)
....++..|..++..|++++|+.+|+++++..|++ ..++..+|.++...|++++|+.++++++++ .+...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34578889999999999999999999999999998 468889999999999999999999999887 34456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCC------------
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREI------------ 1741 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGd------------ 1741 (1956)
.++..+|.+|...|++++|+.+++++++. ...... ......++..+|.++...|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDI----------SRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHHHHTSSSSSCC----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH----------HHHhcC---chHHHHHHHHHHHHHHHcCcccccchhhhhhh
Confidence 78999999999999999999999999988 222210 13456688899999999999
Q ss_pred --------HHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q psy8682 1742 --------HQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD------SRLWNRLG 1804 (1956)
Q Consensus 1742 --------yeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn------aeA~~nLG 1804 (1956)
+++|+.++++++...+.. .....++..+|.++...|++++|+.++++++.+.+.. ..++..+|
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 230 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 999999999998763221 1125688999999999999999999999999875432 34899999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------hhchhccc
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITCVHLGANTQAVEHFLTALNQQAAT------HDGLTPHG 1872 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn------~dA~~~LG 1872 (1956)
.++...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+.. ..++..+|
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 310 (338)
T 3ro2_A 231 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 310 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999876554 6789999999999999999999999999987764 34888999
Q ss_pred cchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1873 LEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1873 ~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
.++...|++.+++ .++++++.+..+
T Consensus 311 ~~~~~~g~~~~A~-~~~~~a~~~~~~ 335 (338)
T 3ro2_A 311 NAYTALGNHDQAM-HFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTCHHHHH-HHHHHHHHC---
T ss_pred HHHHHcCChHHHH-HHHHHHHHHHHh
Confidence 9999999998887 778887776544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=204.49 Aligned_cols=216 Identities=14% Similarity=0.168 Sum_probs=127.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+..++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 56688888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
...|++++|+.+++++++. .|. ....+..+|.++...|++++|+.+++++++..|.+ .
T Consensus 102 ~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~ 159 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA----GME---------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND---T 159 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH----TCC---------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---H
T ss_pred HHhccHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---H
Confidence 7777777777777777776 444 12234445555555555555555555555555554 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
.++..+|.++...|++++|+..|++++...|++..++..+|.++...|++++|+.+|+++++++|++..++..++.+.
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555555555555554444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=204.58 Aligned_cols=220 Identities=16% Similarity=0.153 Sum_probs=187.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
.+.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++. .|.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~-------- 89 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL----DSS-------- 89 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCc--------
Confidence 35678999999999999999999999999999999999999999999999999999999999998 555
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
...++..+|.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..++++++..|.+.
T Consensus 90 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 159 (243)
T 2q7f_A 90 -------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT 159 (243)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred -------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH
Confidence 34567889999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
.++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+.+|+++++++|+++.++..++.+...
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876544
Q ss_pred hc
Q psy8682 1878 VK 1879 (1956)
Q Consensus 1878 lg 1879 (1956)
.+
T Consensus 240 ~~ 241 (243)
T 2q7f_A 240 HH 241 (243)
T ss_dssp --
T ss_pred cc
Confidence 33
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.6e-20 Score=199.85 Aligned_cols=231 Identities=12% Similarity=0.076 Sum_probs=212.4
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-------AEVWLSL 1645 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn-------aeAl~~L 1645 (1956)
..+...++|++|+.. |++++... .+ +.+++.+|.++...|++++|+.+|+++++.+|.+ +.++..+
T Consensus 13 ~~~~~~~~~~~A~~~--~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 13 NKFYKARQFDEAIEH--YNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHTTCHHHHHHH--HHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHH--HHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 455667899999998 99999887 44 4599999999999999999999999999998876 7899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhh
Q psy8682 1646 GISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRL 1725 (1956)
Q Consensus 1646 A~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~ 1725 (1956)
|.++...|++++|+..|++++++.|. +.++...|++++|+..+++++.. +| ..
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~----~~---------------~~ 138 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYV----NP---------------EK 138 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHC----CH---------------HH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHc----Cc---------------ch
Confidence 99999999999999999999999987 45677888899999999999988 43 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
..++..+|.++...|++++|+.+|+++++..|.+ +.++..+|.++...|++++|+.+|+++++..|+++.++..+|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 6678899999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhC------CCcHHHHHHHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGIT 1840 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~------PdnaeA~~~LA~a 1840 (1956)
++..+|++++|+.+|++++++. |++..++..++.+
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999999 8888888877765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=209.75 Aligned_cols=242 Identities=11% Similarity=0.082 Sum_probs=218.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
+++.++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..+++++.. ..++.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------- 71 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATK-------- 71 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTT--------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchh--------
Confidence 35678899999999999999999999999999999999999999999999999999999999986 11222
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
....++..+|.++...|++++|+.+|+++++.+|.+ ..++..+|.+|...|++++|+.+|+++++.+|.++
T Consensus 72 ------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 142 (272)
T 3u4t_A 72 ------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP 142 (272)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred ------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence 235567899999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhc---CCC-----hh
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA---NTQAVEHFLTALNQQ---AAT-----HD 1866 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGd---yEEAie~yekALeLd---Pdn-----~d 1866 (1956)
.++..+|......+++++|+..|+++++..|++..++..+|.++..+|+ +++|+.+|++++++. |+. ..
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 9999999555556699999999999999999999999999999999999 999999999999987 442 25
Q ss_pred chhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1867 GLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1867 A~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
++..+|.++...|++.+++ .++++++.+.+..
T Consensus 223 ~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~ 254 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKAD-AAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHhcCccH
Confidence 8889999999999998888 8889888887775
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-20 Score=213.98 Aligned_cols=260 Identities=13% Similarity=0.048 Sum_probs=222.4
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
..+.+.|+.++.. .++.. ..+|....+..+.++++|...|++++|+..++. .+|....++..++..+...++
T Consensus 9 ~~~~g~y~~ai~~--~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 9 AFYIGSYQQCINE--AQRVK---PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHTTCHHHHHHH--HHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHH--HHhcc---cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCc
Confidence 3567888888887 33333 334442356778889999999999999998866 256567788999999999999
Q ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSI--EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1655 yeEALe~yeKALeL--dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
+++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |. ...++..+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------~~---------------~~~~~~~l 136 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------GD---------------SLECMAMT 136 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------CC---------------SHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------CC---------------CHHHHHHH
Confidence 99999999999976 599999999999999999999999999876 12 33467889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG--VLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG--~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
|.++...|++++|+..|+++++.+|++ .......+ .++...|++++|+..|+++++..|+++.+++++|.++..+
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQDEDA---TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999999987 43333323 3344558999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhcCCChhchh
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ-AVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEE-Aie~yekALeLdPdn~dA~~ 1869 (1956)
|++++|+..|+++++.+|+++.++.++|.++..+|+..+ |..+++++++++|+++.+..
T Consensus 214 g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999999999999999976 57899999999999998654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-21 Score=224.73 Aligned_cols=276 Identities=13% Similarity=0.089 Sum_probs=240.2
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLG 1646 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel------dPdnaeAl~~LA 1646 (1956)
..+...++|++|+.. |++++++.+.++...+.+++.+|.++...|++++|+.+|+++++. .|....++..+|
T Consensus 56 ~~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAF--FQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHTTCHHHHHHH--HHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHH--HHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 355667899999999 999999887776545678999999999999999999999999987 466778999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhcC
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSI------EPKNLEALMAISICFTNEAC-----------------LHDALDTLKDKIRPG 1703 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeL------dPdnaeAl~~LA~aY~~lGd-----------------ydEALe~leKALelg 1703 (1956)
.+|...|++++|+.+|++++++ .+....++..+|.+|...|+ +++|+.++++++++
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~- 212 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL- 212 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999998 45667789999999999999 99999999999887
Q ss_pred CCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHH
Q psy8682 1704 QESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYD 1780 (1956)
Q Consensus 1704 ~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdye 1780 (1956)
..... ..+....++..+|.++...|++++|+.++++++++.+.. .....++..+|.+|..+|+++
T Consensus 213 ---------~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 213 ---------MRDLG---DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp ---------HHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ---------HHHcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 33222 124566788999999999999999999999999987654 011348899999999999999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHH
Q psy8682 1781 KAVDCFRSALQVRPDD------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG------FVRARYNLGITCVHLGANT 1848 (1956)
Q Consensus 1781 EAie~fekALel~Pdn------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd------naeA~~~LA~ay~klGdyE 1848 (1956)
+|+.+|++++.+.+.. ..++..+|.++..+|++++|+.+|++++.+.+. ...++..+|.+|..+|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 9999999999987644 678999999999999999999999999987543 3568999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q psy8682 1849 QAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1849 EAie~yekALeLdPd 1863 (1956)
+|+.+|++++++.+.
T Consensus 361 ~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 361 RALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999876
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=215.08 Aligned_cols=277 Identities=14% Similarity=0.090 Sum_probs=234.3
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLG 1646 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel------dPdnaeAl~~LA 1646 (1956)
......++|++|+.. |++++...|.++...+..+..+|.++...|++++|+.++++++.. .+..+.++..+|
T Consensus 13 ~~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSF--FEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHH--HHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHH--HHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 355667899999999 999999877766545678999999999999999999999999887 344577899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSIEPKN------LEALMAISICFTNEAC--------------------LHDALDTLKDKI 1700 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeLdPdn------aeAl~~LA~aY~~lGd--------------------ydEALe~leKAL 1700 (1956)
.++...|++++|+..+++++++.+.. ..++..+|.+|...|+ +++|+.++++++
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886543 3488999999999999 999999999998
Q ss_pred hcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcC
Q psy8682 1701 RPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSD 1777 (1956)
Q Consensus 1701 elg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lG 1777 (1956)
.. ..... ..+....++..+|.++...|++++|+.+++++++..+.. .....++..+|.++...|
T Consensus 171 ~~----------~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 171 SL----------VTALG---DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HH----------HHHHT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HH----------HHhcC---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 87 32222 123556788999999999999999999999999876543 112348899999999999
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcC
Q psy8682 1778 EYDKAVDCFRSALQVRPDD------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITCVHLG 1845 (1956)
Q Consensus 1778 dyeEAie~fekALel~Pdn------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay~klG 1845 (1956)
++++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++..+|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 9999999999999886654 6789999999999999999999999999875432 558899999999999
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q psy8682 1846 ANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn 1864 (1956)
++++|..+|++++++.+..
T Consensus 318 ~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHC----
T ss_pred ChHHHHHHHHHHHHHHHhh
Confidence 9999999999999998763
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-18 Score=218.55 Aligned_cols=228 Identities=11% Similarity=0.074 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAI-LYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAI-e~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+.|+..|..+...|+.++|. ..|++|+...|.+...|..++......|++++|...|+++++.-+..... +-
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~------~~ 416 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA------LM 416 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH------HH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh------hh
Confidence 346777777777777776775 77777777777766666677777777777777777766666532110000 00
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCCC
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-CPSQSID 1762 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel-~P~n~~~ 1762 (1956)
.. .|... ..+. ........+|...+......|..+.|..+|.+|++. .+..
T Consensus 417 -----------------~~----~p~~~--~~~~--~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--- 468 (679)
T 4e6h_A 417 -----------------ED----DPTNE--SAIN--QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--- 468 (679)
T ss_dssp -----------------HH----STTCH--HHHH--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC---
T ss_pred -----------------hc----cCcch--hhhh--hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC---
Confidence 00 01100 0000 000123445777778888889999999999999987 3333
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC---CcHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSD-EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP---GFVRARYNLG 1838 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lG-dyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P---dnaeA~~~LA 1838 (1956)
..+|...|.+....+ +++.|...|+.+++..|+++..|...+......|+.+.|...|++|+...| .....|....
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~ 548 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI 548 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 567777777776665 499999999999999999999999999999999999999999999999887 3567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
..-...|+.+.+...++++++..|+++.
T Consensus 549 ~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 549 FFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 8899999999999999999999999764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-19 Score=201.25 Aligned_cols=234 Identities=16% Similarity=0.198 Sum_probs=215.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE----NEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~----lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
++.+++.+|..+...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.. ++.+++.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 567999999999999999999999999998 7889999999999999 999999999999999985 78999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q psy8682 1680 SICFTN----EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS----REIHQQVLSLYLN 1751 (1956)
Q Consensus 1680 A~aY~~----lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~----lGdyeEAle~Lek 1751 (1956)
|.+|.. .+++++|+.+|+++++. ....++..+|.+|.. .+++++|+.+|++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~---------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDL---------------------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHc---------------------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 999999 99999999999999987 134578899999999 9999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHH
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKA 1823 (1956)
+++.. + ..++..+|.+|.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++
T Consensus 140 a~~~~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 140 ACDLN--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHhcC--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 99975 4 6799999999999 99999999999999987 468999999999999 99999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1824 LQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1824 LeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
++..| ..+++.+|.+|.. .+++++|+.+|++++++.|+++..+...
T Consensus 213 ~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 262 (273)
T 1ouv_A 213 CELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQ 262 (273)
T ss_dssp HHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99866 8899999999999 9999999999999999998866544443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-20 Score=212.71 Aligned_cols=261 Identities=9% Similarity=0.013 Sum_probs=229.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy8682 1612 GQEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLH 1690 (1956)
Q Consensus 1612 G~aylk~GdydEAIe~fekALeldPdn-aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdyd 1690 (1956)
...++..|+|.+|+..++++...+|++ .++...++.+|...|++++|+..++. .+|....++..++..+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 345678999999999999988877776 46788899999999999999998866 25666778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy8682 1691 DALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG 1770 (1956)
Q Consensus 1691 EALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG 1770 (1956)
+|++.+++++.. ..+|+ ....++.+|.++...|++++|+..+++ |.+ ..++..+|
T Consensus 83 ~A~~~l~~ll~~--~~~P~---------------~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~---~~~~~~l~ 137 (291)
T 3mkr_A 83 AIVAELDREMSR--SVDVT---------------NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS---LECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHS--CCCCS---------------CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS---HHHHHHHH
T ss_pred HHHHHHHHHHhc--ccCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC---HHHHHHHH
Confidence 999999999876 01344 455678899999999999999999998 777 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q psy8682 1771 VLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG--ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848 (1956)
Q Consensus 1771 ~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG--~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyE 1848 (1956)
.++..+|++++|+..|+++++.+|++.......+ .++...|++++|+..|+++++..|+++.+++++|.++..+|+++
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999875544433 34445699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCCc
Q psy8682 1849 QAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKL 1900 (1956)
Q Consensus 1849 EAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~~ 1900 (1956)
+|+.+|++++.++|++++++.++|.++...|+..+++..++++++...+.+.
T Consensus 218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999999998888788999888888763
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-20 Score=202.76 Aligned_cols=248 Identities=13% Similarity=-0.010 Sum_probs=202.3
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
.++|++|+.. |++++...+.++...+.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++
T Consensus 18 ~~~~~~A~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILAR--MEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHH--HHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHH--HHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 4688888888 88888765444434678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHH
Q psy8682 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS 1737 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~ 1737 (1956)
|+.+|+++++++|++..++..+|.+|...|++++|+.+++++++. .|+ .. .... ....+.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~---~~------------~~~~-~~~~~~ 155 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPN---DP------------FRSL-WLYLAE 155 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT---CH------------HHHH-HHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCC---Ch------------HHHH-HHHHHH
Confidence 999999999999999999999999999999999999999999998 676 11 1111 222335
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCh
Q psy8682 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD----DSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd----naeA~~nLG~ay~qlGry 1813 (1956)
..|++++|+..+.+++...|.+ ... ..++.++...++.++|+..+++++...|. ++.++..+|.++...|++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKE---QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCC---STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHhcCCcc---hHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 6689999999999999988876 333 34677778888899999999998877664 368888999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~y 1854 (1956)
++|+.+|++++..+|++... .+.++..+|++++|+..|
T Consensus 232 ~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 232 DSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99999999999998876443 377888888899988877
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=211.92 Aligned_cols=243 Identities=11% Similarity=0.148 Sum_probs=209.6
Q ss_pred ccccchhhHHHhhhcccccccCCCCch-hHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhh-------cccH-----
Q psy8682 682 HKADALPSKLTRLANHTLTFRSPLSSR-EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL-------SDEY----- 748 (1956)
Q Consensus 682 ~k~~~l~~~~~~l~~~~l~~en~~~~~-~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~-------sgey----- 748 (1956)
+++.++|..|++.+.+. ....+.. ...+++..+|.+|++.+|. ++++|..+|.++.. .|++
T Consensus 5 ~~~~~~W~~yi~~E~~~---~~~~~~~~~~~~~a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~ 78 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSN---PLRTEDQTLITKRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 78 (308)
T ss_dssp HHHHHHHHHHHHHHHTC---TTCCCCHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhC---cccCCchHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhccc
Confidence 46789999999998752 1111111 1227888999999999998 89999999999874 4775
Q ss_pred --HHHHHHHHHHHh-hCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHH
Q psy8682 749 --DKAVDCFRSALQ-VRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVIS-NWIKYAQWEE 824 (1956)
Q Consensus 749 --EkArelFerALk-kfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~-lWlkYAqfE~ 824 (1956)
++|+++|++|++ ..|++..+|..|+.++. ..++ ..+|+.+|++++...|.+.. +|..|+.++.
T Consensus 79 ~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~------~~~~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 145 (308)
T 2ond_A 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEE------SRMK-------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR 145 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH------HTTC-------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCcccHHHHHHHHHHHH------hcCC-------HHHHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence 899999999999 68999999999998766 2233 45788999999998777776 9999999999
Q ss_pred HcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 825 SQKQVDRARSIYERALDVDHRNITLWLKYTELEMR-NRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFV 903 (1956)
Q Consensus 825 ~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k-~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~V 903 (1956)
+.|++++|+.+|++|+...|....+|..++.+|.. .|+++.|+.+|+++++..|+...+|..|++++.+.|+.++|+.+
T Consensus 146 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 225 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 225 (308)
T ss_dssp HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999876 69999999999999999999999999999999999999999999
Q ss_pred HHhhcc-------CchHHHHHHHHhhcccccchHHHHHHHHHHHhcccc
Q psy8682 904 FHRDSI-------SQVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECC 945 (1956)
Q Consensus 904 fERAL~-------~~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~ 945 (1956)
|+||+. ....+|..|+.|+.+. ++......++.++++.+|
T Consensus 226 ~~~al~~~~l~p~~~~~l~~~~~~~~~~~--g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 226 FERVLTSGSLPPEKSGEIWARFLAFESNI--GDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHSSSSCGGGCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHcc
Confidence 999983 2567999999999884 467888899999999888
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-19 Score=194.07 Aligned_cols=214 Identities=15% Similarity=0.095 Sum_probs=170.9
Q ss_pred CCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1600 NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
+|...+..++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 44424778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1680 SICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1680 A~aY~~lGdydEALe~leKALe--lg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
|.+|...|++++|+.++++++. . .|. ...++..+|.++...|++++|+.+++++++..|
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~----~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTL----YPE---------------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTT----CTT---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCcc----Ccc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 9999999999999999999887 4 333 344556677777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
.+ ..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|..+++++++..|++..+..
T Consensus 173 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 173 NQ---PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 66 6677777777777777777777777777777777777777777777777777777777777777776665543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-19 Score=189.13 Aligned_cols=210 Identities=14% Similarity=0.100 Sum_probs=122.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
++..++.+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++..|++..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHc-CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCC
Q psy8682 1684 TNE-ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID 1762 (1956)
Q Consensus 1684 ~~l-GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~ 1762 (1956)
... |++++|+.+++++++. | ..|..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-----~----------------------------------------------~~~~~--- 112 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-----P----------------------------------------------TYPTP--- 112 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-----T----------------------------------------------TCSCH---
T ss_pred HHhcCcHHHHHHHHHHHHcC-----c----------------------------------------------CCcch---
Confidence 666 6666666666666551 0 11222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CcHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP-GFVRARYNLGITC 1841 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P-dnaeA~~~LA~ay 1841 (1956)
..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..++++++..| .+..++..++.++
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555555555555 5555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1842 VHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1842 ~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
...|++++|..+++.++...|+++.+
T Consensus 193 ~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 193 KALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 55555555555555555555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=196.82 Aligned_cols=215 Identities=16% Similarity=0.142 Sum_probs=201.5
Q ss_pred hCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchh
Q psy8682 1634 QEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA 1712 (1956)
Q Consensus 1634 ldPdn-aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~ea 1712 (1956)
.+|.+ +.+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+++++++. +|.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~--- 103 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS----DSR--- 103 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT---
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcC---
Confidence 45554 7889999999999999999999999999999999999999999999999999999999999998 665
Q ss_pred hhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1713 YKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR--QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1713 y~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALe--l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
....+..+|.++...|++++|+.+++++++ ..|.. ..++..+|.++...|++++|+.+|++++
T Consensus 104 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 104 ------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER---SRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999 66766 8899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1791 el~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
+..|.+..++..+|.++...|++++|+.+|+++++..|.+..++..++.++...|++++|..++++++++.|+++.++..
T Consensus 169 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 169 RLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-18 Score=185.13 Aligned_cols=199 Identities=14% Similarity=0.026 Sum_probs=159.7
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CC
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN-EQ 1654 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l-Gd 1654 (1956)
...+++++|+.. +++++...|.+ ...++.+|.++...|++++|+.+|++++..+|.+..++..+|.++... |+
T Consensus 19 ~~~~~~~~A~~~--~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 19 MRGQDYRQATAS--IEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHTTCHHHHHHH--HHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHhhHHHHHHH--HHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 345688899988 89988876654 559999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1655 DPQAIAALSKCLS--IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1655 yeEALe~yeKALe--LdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
+++|+..|+++++ ..|....++..+|.++...|++++|+.+++++++. .|. ....+..+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~l 153 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA----QPQ---------------FPPAFKEL 153 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STT---------------CHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------------CchHHHHH
Confidence 9999999999999 66666788888888888888888888888888877 444 23455667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCP-SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P-~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
|.++...|++++|+.+++++++..| .+ ..++..++.++...|++++|..+++.++...|+++.+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQ---ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7777777777777777777777776 65 6666666666677777777777777766667766665443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-20 Score=202.78 Aligned_cols=243 Identities=13% Similarity=0.120 Sum_probs=212.3
Q ss_pred HHcCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1616 LRQGDLPSAILYLEAAAKQE----PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1616 lk~GdydEAIe~fekALeld----PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34578999999999999974 45678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ 1771 (1956)
|+.+++++++. +|. ...++..+|.++...|++++|+.+|+++++..|.+ ......++.
T Consensus 96 A~~~~~~al~~----~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~ 153 (275)
T 1xnf_A 96 AYEAFDSVLEL----DPT---------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND---PFRSLWLYL 153 (275)
T ss_dssp HHHHHHHHHHH----CTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHHHHHHHHhc----Ccc---------------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---hHHHHHHHH
Confidence 99999999999 665 34567889999999999999999999999999998 655555554
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHcCCH
Q psy8682 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG----FVRARYNLGITCVHLGAN 1847 (1956)
Q Consensus 1772 ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd----naeA~~~LA~ay~klGdy 1847 (1956)
. ...|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++...|. +..++..+|.++..+|++
T Consensus 154 ~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 154 A-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp H-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred H-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 4 6679999999999999999998866654 777888899999999999999987664 368999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1848 TQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1848 EEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
++|+.+|++++.++|++... .+.++..++++.+++
T Consensus 232 ~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 232 DSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQ 266 (275)
T ss_dssp HHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhH
Confidence 99999999999999986543 355666777777766
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-19 Score=187.97 Aligned_cols=179 Identities=18% Similarity=0.253 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
++.+|+++|.+|...|++++|+..|++++++ +|+ ...++..+|.++...|++++|+..+.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~---------------~~~~~~~la~~~~~~~~~~~a~~~~~~ 64 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPN---------------NVETLLKLGKTYMDIGLPNDAIESLKK 64 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455666666666666666666666666666 444 234455666666666666666666677
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna 1831 (1956)
++...|.. ..++..+|.++...++++.|+..+.+++...|.+..++..+|.++..+|++++|+..|+++++++|+++
T Consensus 65 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 65 FVVLDTTS---AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 77777777 778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
.+++++|.+|..+|++++|+.+|++|++++|+++ .+.+|.+
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a--~~~lali 182 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA--KYELALV 182 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH--HHCSCCS
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH--HHHHHhh
Confidence 8888888888888888888888888888888753 4566654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-19 Score=220.48 Aligned_cols=216 Identities=14% Similarity=0.088 Sum_probs=204.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1619 GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD-PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697 (1956)
Q Consensus 1619 GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy-eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~le 1697 (1956)
+.+++|+..++++....|.++.+++.+|.++...|++ ++|+.+|+++++++|++..+++.+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4478899999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q psy8682 1698 DKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR---------EIHQQVLSLYLNAARQCPSQSIDPDVQNG 1768 (1956)
Q Consensus 1698 KALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l---------GdyeEAle~LekALel~P~n~~~a~a~~~ 1768 (1956)
+++++ +|+ ..++.++|.++... |++++|+..|+++++++|++ ..+++.
T Consensus 162 ~al~~----~p~----------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 218 (474)
T 4abn_A 162 GALTH----CKN----------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---GRSWYI 218 (474)
T ss_dssp HHHTT----CCC----------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred HHHhh----CCC----------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHH
Confidence 99999 665 24678899999999 99999999999999999999 999999
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHH
Q psy8682 1769 LGVLFNLS--------DEYDKAVDCFRSALQVRP---DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837 (1956)
Q Consensus 1769 LG~ly~~l--------GdyeEAie~fekALel~P---dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~L 1837 (1956)
+|.+|..+ |++++|+.+|+++++++| .++.+++++|.+|..+|++++|+..|+++++++|++..++..+
T Consensus 219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l 298 (474)
T 4abn_A 219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298 (474)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999 999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q psy8682 1838 GITCVHLGANTQAVEHFLTA 1857 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekA 1857 (1956)
+.++..+|++++|+..+.+.
T Consensus 299 ~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999876543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-19 Score=219.89 Aligned_cols=233 Identities=7% Similarity=0.022 Sum_probs=190.6
Q ss_pred ccchhhHHHhhhcccccccCCCCchh--HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Q psy8682 684 ADALPSKLTRLANHTLTFRSPLSSRE--IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 761 (1956)
Q Consensus 684 ~~~l~~~~~~l~~~~l~~en~~~~~~--~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkk 761 (1956)
+.++|..|++++++ ++.+..+ ..+++..+|++|+...|. ++++|+.++.++...|+.++|+++|++|+..
T Consensus 171 s~~~W~~y~~~E~~-----~~~~~~~~~~~~Rv~~~ye~al~~~p~---~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 171 SVKNAARLIDLEME-----NGMKLGGRPHESRMHFIHNYILDSFYY---AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp SHHHHHHHHHHHHT-----CTTCCCHHHHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc-----CCccCcchhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 44799999999862 2222211 267899999999999997 7999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHH---------hhcCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 762 RPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNI---------RKNRMVISNWIKYAQWEESQKQVDRA 832 (1956)
Q Consensus 762 fP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL---------~~~~~s~~lWlkYAqfE~~~Gd~ErA 832 (1956)
|.+..+|+.|..+.. . ++. ..+ ++++.+ ........+|+.|++|+.+.+++++|
T Consensus 243 -P~~~~l~~~y~~~~e-------~---~~~---~~~---l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 243 -SDGMFLSLYYGLVMD-------E---EAV---YGD---LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp -CCSSHHHHHHHHHTT-------C---THH---HHH---HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred -CCcHHHHHHHHhhcc-------h---hHH---HHH---HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999987643 1 111 111 222211 00112357899999999999999999
Q ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhccCc
Q psy8682 833 RSIYERALDVDHRNITLWLKYTELEMRNR-QVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDSISQ 911 (1956)
Q Consensus 833 RsIfERALs~~Pk~~dLWl~YadfE~k~g-nierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL~~~ 911 (1956)
|.||++| ...+....+|+.++.+|...+ ++++||.||+++++..|+..++|..|++||.+.|+.+++|.+|+|+ ..+
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~-~k~ 383 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL-EKT 383 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-CCB
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHH
Confidence 9999999 544457789999999999887 5999999999999999999999999999999999999999999998 457
Q ss_pred hHHHHHHHHhhcccccchHHHHHHHHHHHhcccc
Q psy8682 912 VTLWLGALTLSLEGLGSNLQSWVRFLARDVGECC 945 (1956)
Q Consensus 912 ~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~ 945 (1956)
..+|..|++||..++ +.+.....++++++.|.
T Consensus 384 ~~lw~~~~~fE~~~G--~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 384 SRMWDSMIEYEFMVG--SMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHhc
Confidence 899999999999964 67888888888877553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=183.38 Aligned_cols=172 Identities=19% Similarity=0.291 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
++.+|+.+|.+|...|++++|+..|+++++++|+++.++..+|.+|...|++++|+..+.+++.. .|+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~----~~~-------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL----DTT-------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCC--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----Cch--------
Confidence 44556666666666666666666666666666666666666666666666666666666666655 443
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
...++..+|.++...++++.|...+.+++...|.+ ..++..+|.+|..+|++++|+..|+++++++|.++
T Consensus 72 -------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 72 -------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred -------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 23344555666666666666777777777777776 77777777777777788888888887777777777
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna 1831 (1956)
.++.++|.+|..+|++++|+.+|+++++++|+++
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 7777888888888888888888888877777653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=203.00 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=202.6
Q ss_pred hccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy8682 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ--------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668 (1956)
Q Consensus 1597 ~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel--------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL 1668 (1956)
.+++|. .+.+++.+|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|+++++.
T Consensus 20 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 20 GYEIPA-RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp CTTSCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555 7889999999999999999999999999985 5667889999999999999999999999999987
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC
Q psy8682 1669 --------EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE 1740 (1956)
Q Consensus 1669 --------dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG 1740 (1956)
.|....++..+|.+|...|++++|+.+++++++. +....... .+....++..+|.++...|
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----------~~~~~~~~-~~~~~~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI----------REKVLGKD-HPDVAKQLNNLALLCQNQG 167 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------HHHHHCTT-CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH----------HHHhcCCC-ChHHHHHHHHHHHHHHHcC
Confidence 3556678999999999999999999999999988 33221111 2456778899999999999
Q ss_pred CHHHHHHHHHHHHHh--------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------C------H
Q psy8682 1741 IHQQVLSLYLNAARQ--------CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD---------D------S 1797 (1956)
Q Consensus 1741 dyeEAle~LekALel--------~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd---------n------a 1797 (1956)
++++|+.+++++++. .|.. ..++..+|.+|..+|++++|+.+|++++...+. . .
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 244 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNV---AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence 999999999999988 4444 778999999999999999999999999976432 2 2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
..+..++..+...+.+.+|+..+++++...|....++..+|.+|..+|++++|+.+|++++++.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 344455556667788888999999999999999999999999999999999999999999999886
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-17 Score=187.83 Aligned_cols=228 Identities=16% Similarity=0.155 Sum_probs=207.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCc
Q psy8682 1635 EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN----EACLHDALDTLKDKIRPGQESNPRP 1710 (1956)
Q Consensus 1635 dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~----lGdydEALe~leKALelg~e~dPd~ 1710 (1956)
+|+++.+++.+|.++...|++++|+.+|+++++ |++..+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------- 71 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------- 71 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--------
Confidence 478899999999999999999999999999998 7889999999999999 99999999999999988
Q ss_pred hhhhhhcCcchhhhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q psy8682 1711 SAYKADALPSKLTRLANHTLTFRSPLSS----REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL----SDEYDKA 1782 (1956)
Q Consensus 1711 eay~~Ll~~~Kl~e~a~a~lnLA~ay~~----lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~----lGdyeEA 1782 (1956)
....++..+|.+|.. .+++++|+.+|+++++.. + +.++..+|.+|.. .+++++|
T Consensus 72 -------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 72 -------------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---AEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred -------------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---ccHHHHHHHHHHcCCCcccCHHHH
Confidence 134578889999999 999999999999999874 5 8899999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH----LGANTQAVEHF 1854 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k----lGdyEEAie~y 1854 (1956)
+.+|+++++.. ++.++..+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|
T Consensus 134 ~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 134 VEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 99999999975 78899999999999 99999999999999987 468899999999999 99999999999
Q ss_pred HHHHHhcCCChhchhccccchhh----hcccHHHHHHHHHhccccCC
Q psy8682 1855 LTALNQQAATHDGLTPHGLEPRA----VKEMSDSIWYSLRGFHPPFG 1897 (1956)
Q Consensus 1855 ekALeLdPdn~dA~~~LG~l~~~----lg~~seAIws~Lr~Al~l~g 1897 (1956)
+++++..| +.+++.+|.++.. .+++.+++ .++++++..-+
T Consensus 210 ~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~-~~~~~a~~~~~ 253 (273)
T 1ouv_A 210 SKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGA 253 (273)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTC
T ss_pred HHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHH-HHHHHHHHcCC
Confidence 99999866 7899999999998 88888887 77887766644
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=193.02 Aligned_cols=223 Identities=9% Similarity=0.021 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q psy8682 1622 PSAILYLEAAAKQEPDNAEVWLSLGISLAE-------NEQD-------PQAIAALSKCLS-IEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1622 dEAIe~fekALeldPdnaeAl~~LA~ay~~-------lGdy-------eEALe~yeKALe-LdPdnaeAl~~LA~aY~~l 1686 (1956)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 677788888888888888888888887763 4775 788888888888 6888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLAN-HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV 1765 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~-a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a 1765 (1956)
|++++|...|+++++. .|. ... ++..+|.++...|++++|+..|+++++..|.. ..+
T Consensus 113 ~~~~~A~~~~~~al~~----~p~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~ 170 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI----EDI---------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR---HHV 170 (308)
T ss_dssp TCHHHHHHHHHHHHTS----SSS---------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---THH
T ss_pred CCHHHHHHHHHHHHhc----ccc---------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHH
Confidence 8888888888888887 555 111 56777788888888888888888888887776 666
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCC-cHHHHHHHHHH
Q psy8682 1766 QNGLGVLFNL-SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL---SPG-FVRARYNLGIT 1840 (1956)
Q Consensus 1766 ~~~LG~ly~~-lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL---~Pd-naeA~~~LA~a 1840 (1956)
+...+.+... .|++++|+.+|+++++..|+++.+|..+|.++..+|++++|+..|++++.. .|+ ...+|..++..
T Consensus 171 ~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 6655555433 688888888888888888888888888888888888888888888888885 443 66778888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1841 CVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1841 y~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
+...|++++|..+++++++..|++.+
T Consensus 251 ~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 251 ESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHcCCHHHHHHHHHHHHHHcccccc
Confidence 88888888888888888888887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=182.04 Aligned_cols=156 Identities=14% Similarity=0.114 Sum_probs=96.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEP-DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldP-dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
++..++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 445777777777777777777777777777776 6666777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CC
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS--QS 1760 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~--n~ 1760 (1956)
|..+|++++|+..++++++. +|+ ...+. ......+..+|.++...|++++|+..|+++++++|+ +
T Consensus 86 ~~~~~~~~~A~~~~~~al~~----~p~---~~~~~-----~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~- 152 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA----VPG---NATIE-----KLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK- 152 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----STT---CHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH-
T ss_pred HHHcccHHHHHHHHHHHHHH----CCC---cHHHH-----HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc-
Confidence 77777777777777777766 555 11111 223344444555555555555555555555555444 4
Q ss_pred CCHHHHHHHHHHHH
Q psy8682 1761 IDPDVQNGLGVLFN 1774 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~ 1774 (1956)
+.++..+|.+|.
T Consensus 153 --~~~~~~l~~~~~ 164 (228)
T 4i17_A 153 --TDALYSLGVLFY 164 (228)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 444445554443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=213.08 Aligned_cols=215 Identities=19% Similarity=0.199 Sum_probs=195.5
Q ss_pred hHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1580 DFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDL-PSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1580 dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~Gdy-dEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
.+++++.. ++.... ..|. ++..++.+|.++...|++ ++|+.+|+++++.+|+++.+++.+|.+|...|++++|
T Consensus 83 ~~~~al~~--l~~~~~---~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 83 EMEKTLQQ--MEEVLG---SAQV-EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHH--HHHHHT---TCCC-CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHH--HHHHhc---cCch-hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34555554 443332 2333 788999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNE---------ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT 1729 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~l---------GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ 1729 (1956)
+.+|+++++++|+ ..++..+|.+|... |++++|+..|++++++ +|+ ...++
T Consensus 157 ~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~---------------~~~~~ 216 (474)
T 4abn_A 157 HTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVL---------------DGRSW 216 (474)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTT---------------CHHHH
T ss_pred HHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCC---------------CHHHH
Confidence 9999999999999 79999999999999 9999999999999999 666 45577
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHhCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1730 LTFRSPLSSR--------EIHQQVLSLYLNAARQCP---SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1730 lnLA~ay~~l--------GdyeEAle~LekALel~P---~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
..+|.+|... |++++|+.+|+++++++| .+ +.+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN---PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 8899999999 999999999999999999 87 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
++..++.++..+|++++|+..+.+.
T Consensus 294 a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 294 PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999877554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-18 Score=210.40 Aligned_cols=243 Identities=10% Similarity=0.133 Sum_probs=204.7
Q ss_pred cccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhh-------cccHH------
Q psy8682 683 KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL-------SDEYD------ 749 (1956)
Q Consensus 683 k~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~-------sgeyE------ 749 (1956)
+...+|..|++.+...- ...-+.....+++..+|++|++.+|. ++++|+.+|.++.. .|+++
T Consensus 228 ~~~~~w~~~~~~e~~~~--~~~~~~~~~~~~a~~~y~~al~~~p~---~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNP--LRTEDQTLITKRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHHHCS--SCCSCSHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--ccCCcchhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 45689999998876411 00001111345788999999999997 89999999999986 69987
Q ss_pred -HHHHHHHHHHh-hCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHc
Q psy8682 750 -KAVDCFRSALQ-VRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVI-SNWIKYAQWEESQ 826 (1956)
Q Consensus 750 -kArelFerALk-kfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~-~lWlkYAqfE~~~ 826 (1956)
+|+++|++|++ .+|++..+|..|+.++. ..++ .++|+.+|++++...+.+. .+|+.|+.++.+.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~------~~g~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEE------SRMK-------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHH------HTTC-------HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHH------hcCC-------HHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence 89999999998 78999999999997765 2233 5578899999999767665 6999999999999
Q ss_pred CCHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 827 KQVDRARSIYERALDVDHRNITLWLKYTELEM-RNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFH 905 (1956)
Q Consensus 827 Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~-k~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfE 905 (1956)
|++++|+.+|++|+...|....+|...+.+|. ..|++++||.+|+++++.+|+...+|..|+++|.+.|+.++||.+|+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 99999999999999998888888777666654 48999999999999999999999999999999999999999999999
Q ss_pred hhc---c----CchHHHHHHHHhhcccccchHHHHHHHHHHHhcccc
Q psy8682 906 RDS---I----SQVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECC 945 (1956)
Q Consensus 906 RAL---~----~~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~ 945 (1956)
||+ + ....+|..|++||.++ ++.+...++..++++.||
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~--G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNI--GDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHHTH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCc
Confidence 998 2 2345999999999985 478888999999999888
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-17 Score=181.00 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=169.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP-KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdP-dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
+.++.+++.+|.++...|++++|+..|+++++++| .+..+++.+|.++...|++++|+.+++++++. +|+ ..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~---~~ 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK----NYN---LA 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCS---HH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh----Ccc---hH
Confidence 45678999999999999999999999999999998 88899999999999999999999999999999 888 32
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
... ...+.++..++..-.....+++|+.....-....... ..++..+|.++..+|++++|+..|+++++++|
T Consensus 77 ~~~-----~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 77 NAY-----IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY---AIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp HHH-----HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred HHH-----HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH---HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 222 1233444444544444445555555432221111122 55789999999999999999999999999999
Q ss_pred C--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1795 D--DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1795 d--naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
+ ++.++.++|.+|...| ...++++..+.+.....+ .+......+.+++|+.+|+++++++|+++++...++
T Consensus 149 ~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 9 8999999999997654 455677777776665443 444556678899999999999999999999888777
Q ss_pred cchh
Q psy8682 1873 LEPR 1876 (1956)
Q Consensus 1873 ~l~~ 1876 (1956)
.+..
T Consensus 222 ~i~~ 225 (228)
T 4i17_A 222 QVKA 225 (228)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-18 Score=200.71 Aligned_cols=240 Identities=14% Similarity=0.091 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------CH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ---EPD---NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK-------NL 1673 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALel---dPd---naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd-------na 1673 (1956)
.++.+|..+...|++++|+.+|++++++ .++ .+.+++.+|.+|...|++++|+.++++++++.+. ..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4556999999999999999999999987 232 4678999999999999999999999999998543 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
.++..+|.+|...|++++|+.++++++++ ..... .....+.++.++|.+|...|++++|+.++++++
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~~~~~---~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSM----------AEAEK---QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------HHHcC---ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999988 22221 123456788999999999999999999999999
Q ss_pred Hh-----C-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC---hHHHHHH
Q psy8682 1754 RQ-----C-PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-----PDDSRLWNRLGASLANGNR---PEEAVEA 1819 (1956)
Q Consensus 1754 el-----~-P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-----PdnaeA~~nLG~ay~qlGr---yeEAie~ 1819 (1956)
++ + |.. +.++..+|.++..+|++++|+.++++++.+. |.....+..+|.++...|+ +++|+..
T Consensus 252 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 252 AVFEESNILPSL---PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHTTCGGGH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHhhccchhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 94 4 444 8899999999999999999999999999874 3333446789999999999 8888888
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1820 YHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1820 yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
++++ ...|....++..+|.+|..+|++++|..+|++++++...
T Consensus 329 ~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 329 LESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8776 334445678899999999999999999999999998876
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-16 Score=193.95 Aligned_cols=273 Identities=15% Similarity=0.091 Sum_probs=227.2
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLR----QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE--- 1651 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk----~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~--- 1651 (1956)
+++++|+.. |+++... . ++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 129 ~~~~~A~~~--~~~a~~~--~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 129 VDKAESVKW--FRLAAEQ--G----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp CCHHHHHHH--HHHHHHT--T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHH--HHHHHHC--C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC
Confidence 467777777 7776643 2 45578888888887 77888888888888775 567888888888887
Q ss_pred -cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhH
Q psy8682 1652 -NEQDPQAIAALSKCLSIEPKNLEALMAISICFTN----EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLA 1726 (1956)
Q Consensus 1652 -lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~----lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a 1726 (1956)
.+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. ...
T Consensus 199 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------~~~ 255 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---------------------GNS 255 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---------------------TCH
T ss_pred CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---------------------CCH
Confidence 78888888888888765 467788888888886 77888888888888766 234
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCH
Q psy8682 1727 NHTLTFRSPLSS----REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-----DEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1727 ~a~lnLA~ay~~----lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-----GdyeEAie~fekALel~Pdna 1797 (1956)
.+++.+|.+|.. .+++++|+.+|+++++. .+ +.+++.+|.+|... +++++|+.+|+++++. .++
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 328 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDA 328 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCH
Confidence 567889999998 89999999999999875 44 77999999999988 9999999999999986 568
Q ss_pred HHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1798 RLWNRLGASLANGN---RPEEAVEAYHTALQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1798 eA~~nLG~ay~qlG---ryeEAie~yeKALeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
.+++.+|.+|...| ++++|+.+|+++++. .++.++++||.+|.. .+++++|+.+|+++++. .++.+++.
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 404 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHH
Confidence 89999999999977 899999999999987 678999999999999 89999999999999886 46889999
Q ss_pred cccchhh----hcccHHHHHHHHHhccccC
Q psy8682 1871 HGLEPRA----VKEMSDSIWYSLRGFHPPF 1896 (1956)
Q Consensus 1871 LG~l~~~----lg~~seAIws~Lr~Al~l~ 1896 (1956)
+|.++.. .+++.+++ .++++|...-
T Consensus 405 Lg~~y~~g~g~~~d~~~A~-~~~~~A~~~~ 433 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAW-AWFDTASTND 433 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHH-HHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHH-HHHHHHHHCC
Confidence 9999987 77877776 7777777665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-16 Score=192.85 Aligned_cols=273 Identities=18% Similarity=0.109 Sum_probs=240.6
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLR----QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE-- 1651 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk----~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~-- 1651 (1956)
.+++++|+.. |.++... . ++.+++.+|..|.. .+++++|+..|+++.+. +++.+++.+|.+|..
T Consensus 92 ~~~~~~A~~~--~~~a~~~--~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 161 (490)
T 2xm6_A 92 PQDYAQAVIW--YKKAALK--G----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGD 161 (490)
T ss_dssp CCCHHHHHHH--HHHHHHT--T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHH--HHHHHHC--C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC
Confidence 4678888888 8888743 2 45699999999999 89999999999999875 589999999999998
Q ss_pred --cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhh
Q psy8682 1652 --NEQDPQAIAALSKCLSIEPKNLEALMAISICFTN----EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRL 1725 (1956)
Q Consensus 1652 --lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~----lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~ 1725 (1956)
.+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. ..
T Consensus 162 g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------~~ 218 (490)
T 2xm6_A 162 GVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS---------------------GD 218 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------TC
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC---------------------CC
Confidence 88999999999999986 578999999999998 89999999999999877 13
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1726 ANHTLTFRSPLSS----REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1726 a~a~lnLA~ay~~----lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~----lGdyeEAie~fekALel~Pdna 1797 (1956)
..+++.+|.+|.. .+++++|+.+|+++++. .+ +.+++.+|.+|.. .+++++|+.+|+++++. .++
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~ 291 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNS 291 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCH
Confidence 3567889999987 89999999999999876 34 7799999999998 99999999999999875 678
Q ss_pred HHHHHHHHHHHHC-----CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1798 RLWNRLGASLANG-----NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG---ANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1798 eA~~nLG~ay~ql-----GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG---dyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
.+++.+|.+|... +++++|+.+|+++++. .+..++++||.+|...| ++++|+.+|+++++. +++.+++
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 367 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF 367 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH
Confidence 9999999999998 9999999999999986 56789999999999977 899999999999987 6889999
Q ss_pred ccccchhh----hcccHHHHHHHHHhcccc
Q psy8682 1870 PHGLEPRA----VKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1870 ~LG~l~~~----lg~~seAIws~Lr~Al~l 1895 (1956)
.+|.++.. .+++.+++ .+++++...
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~-~~~~~A~~~ 396 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAA-IWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHH-HHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHHH-HHHHHHHhC
Confidence 99999988 77887777 777777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.75 E-value=9.7e-18 Score=210.02 Aligned_cols=246 Identities=11% Similarity=0.041 Sum_probs=184.9
Q ss_pred ccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHh----hcccHHHHHHHHHHHH
Q psy8682 684 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFN----LSDEYDKAVDCFRSAL 759 (1956)
Q Consensus 684 ~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~----~sgeyEkArelFerAL 759 (1956)
|.+||..|++.....- +..+.+.++|++|+..-.....++++|..++.++. .++++++++.+|++|+
T Consensus 46 s~~LW~~Y~~f~~~~~---------~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL 116 (493)
T 2uy1_A 46 NLDLWMLYIEYVRKVS---------QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRAL 116 (493)
T ss_dssp CHHHHHHHHHHHHHHC-------------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC---------chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Confidence 7889999999876421 12357899999999973211226899999999986 3578999999999999
Q ss_pred hhCCCC--HH------------------------------------------------HHHHHHhhccCCCCCCCCCChH
Q psy8682 760 QVRPDF--TE------------------------------------------------LLVYLFSSLDFQPPKQKISDPD 789 (1956)
Q Consensus 760 kkfP~d--~~------------------------------------------------IWl~ylsfL~~~~~~~ki~d~E 789 (1956)
.. |.. .. +|..|+.+....+ ...+
T Consensus 117 ~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~-----~~~~ 190 (493)
T 2uy1_A 117 QT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG-----MKLG 190 (493)
T ss_dssp TS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT-----TCCC
T ss_pred hC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC-----ccCc
Confidence 84 432 33 4555554433110 0001
Q ss_pred HhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCH----------------------
Q psy8682 790 ELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNI---------------------- 847 (1956)
Q Consensus 790 ea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~---------------------- 847 (1956)
. .....|++.+|++||..+|....+|+.|++|+...|++++||.||+||+.. |.+.
T Consensus 191 ~-~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 191 G-RPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHH
T ss_pred c-hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHH
Confidence 1 113567889999999999999999999999999999999999999999998 8764
Q ss_pred ------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhhc
Q psy8682 848 ------------------TLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLE-NVAGKLFVFHRDS 908 (1956)
Q Consensus 848 ------------------dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~G-d~e~aR~VfERAL 908 (1956)
.+|+.|++|+.+.+++++||.||++| ...+....+|..|+.+|...| |.++||.||++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 35666777777888999999999999 543445789999999999877 6999999999998
Q ss_pred ---cCchHHHHHHHHhhccccc------------chHHHHHHHHHHHhccccCccce
Q psy8682 909 ---ISQVTLWLGALTLSLEGLG------------SNLQSWVRFLARDVGECCCGQVV 950 (1956)
Q Consensus 909 ---~~~~~LWl~Yi~fEle~~~------------~~lk~~~r~l~ralkec~~g~~~ 950 (1956)
+..+++|+.|++||.+.+. ++...|.+|++.+.+ .|+.-
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~---~G~~~ 401 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFM---VGSME 401 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHH---HSCHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHH
Confidence 6778999999999877432 124557777777433 56644
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=217.39 Aligned_cols=173 Identities=21% Similarity=0.288 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
|++++++++||.+|..+|++++|+.+|++++++ +|+ ...++.++|.+|..+|++++|+..|
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~---------------~~~a~~nLg~~l~~~g~~~eA~~~~ 66 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV----FPE---------------FAAAHSNLASVLQQQGKLQEALMHY 66 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSC---------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444445555555555555555555555555554 333 2334445555555555555555555
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
+++++++|++ +.+++++|.+|..+|++++|+++|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|+
T Consensus 67 ~~Al~l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 67 KEAIRISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555556665 6666666666666666666666666666666666666666666666667777777777777766776
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
+..++.+||.+|..+|++++|.+.|++++++.|+.
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 66667777777777777777777777766666553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=196.63 Aligned_cols=244 Identities=12% Similarity=0.025 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1641 VWLSLGISLAENEQDPQAIAALSKCLSI---EPK---NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdyeEALe~yeKALeL---dPd---naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.++.+|.++...|++++|+.+|++++++ .++ .+.++..+|.+|...|++++|+.++++++++ +.
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~~ 174 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI----------YK 174 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HH
Confidence 3455999999999999999999999987 232 4578999999999999999999999999998 33
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
.... ..+..+.++.++|.+|...|++++|+.+|++++++.+.. .....++.++|.+|..+|++++|+.+|++++.
T Consensus 175 ~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 175 EHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp TCST--THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCcc--chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2221 024567789999999999999999999999999886543 11235899999999999999999999999999
Q ss_pred -----hC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Q psy8682 1792 -----VR-PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS-----PGFVRARYNLGITCVHLGA---NTQAVEHFLTA 1857 (1956)
Q Consensus 1792 -----l~-PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~-----PdnaeA~~~LA~ay~klGd---yEEAie~yekA 1857 (1956)
.+ |..+.++.++|.++..+|++++|+.++++++++. |.....+..+|.++...|+ +++|+.+++++
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 45 7778999999999999999999999999999873 3344456789999999999 88888888877
Q ss_pred HHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1858 LNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1858 LeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
...|....++..+|.++...|++.+|+ .++++++.+...
T Consensus 333 -~~~~~~~~~~~~la~~y~~~g~~~~A~-~~~~~al~~~~~ 371 (383)
T 3ulq_A 333 -MLYADLEDFAIDVAKYYHERKNFQKAS-AYFLKVEQVRQL 371 (383)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTS
T ss_pred -cCHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHH
Confidence 455566678999999999999998888 778877666544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=216.06 Aligned_cols=172 Identities=20% Similarity=0.243 Sum_probs=123.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1635 EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1635 dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.|++++++++||.+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|++++++ +|+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----~P~----- 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPT----- 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-----
Confidence 46666666677777777777777777777777777776666777777777777777777777777666 554
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
.+.++.++|.++..+|++++|++.|+++++++|++ +.+++++|.+|..+|++++|+.+|+++++++|
T Consensus 76 ----------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 76 ----------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34456666777777777777777777777777777 77777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1795 dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
+++.++.++|.+|..+|++++|++.|++++++.|
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 7777777777777777877777777777776544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-17 Score=180.73 Aligned_cols=214 Identities=9% Similarity=0.028 Sum_probs=142.0
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1633 KQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN---LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1633 eldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn---aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
...|.++..++.+|..+...|++++|+..|+++++..|++ ..+++.+|.+|...|++++|+..|+++++. .|+
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~p~ 84 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI----YQI 84 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----CCC
Confidence 4456677777777777777777777777777777777777 677777777777777777777777777777 665
Q ss_pred chhhhhhcCcchhhhhHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1710 PSAYKADALPSKLTRLANHTLTFRSPLSS--------REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK 1781 (1956)
Q Consensus 1710 ~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~--------lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeE 1781 (1956)
.+....+++.+|.++.. .|++++|+..|+++++.+|++ ..+...++.+....+
T Consensus 85 ------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~a~~~~~~~~~---- 145 (261)
T 3qky_A 85 ------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH---ELVDDATQKIRELRA---- 145 (261)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC---TTHHHHHHHHHHHHH----
T ss_pred ------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc---hhHHHHHHHHHHHHH----
Confidence 12344567778888887 999999999999999999988 333322222111111
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHc----------CCHH
Q psy8682 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---FVRARYNLGITCVHL----------GANT 1848 (1956)
Q Consensus 1782 Aie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd---naeA~~~LA~ay~kl----------GdyE 1848 (1956)
.....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|..+ |+++
T Consensus 146 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 146 -------------KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp -------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 11223566666666666666666666666666665 445666666666655 6666
Q ss_pred HHHHHHHHHHHhcCCCh---hchhccccchhhhcccH
Q psy8682 1849 QAVEHFLTALNQQAATH---DGLTPHGLEPRAVKEMS 1882 (1956)
Q Consensus 1849 EAie~yekALeLdPdn~---dA~~~LG~l~~~lg~~s 1882 (1956)
+|+.+|+++++..|+++ .+...++.++..++++.
T Consensus 213 ~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 213 RAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 67777777777766664 34444555555555443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-18 Score=191.20 Aligned_cols=250 Identities=13% Similarity=0.079 Sum_probs=197.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy8682 1635 EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--------EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQES 1706 (1956)
Q Consensus 1635 dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL--------dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~ 1706 (1956)
+|..+.++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.++++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 98 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI---- 98 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----
Confidence 4666889999999999999999999999999995 5667788999999999999999999999999988
Q ss_pred CCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1707 NPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC-----PSQSIDPDVQNGLGVLFNLSDEYDK 1781 (1956)
Q Consensus 1707 dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~-----P~n~~~a~a~~~LG~ly~~lGdyeE 1781 (1956)
+....... .+....++..+|.++...|++++|+.+++++++.. +.......++..+|.++...|++++
T Consensus 99 ------~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 99 ------REKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp ------HHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ------HHHHhCCC-ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 33321111 24567788999999999999999999999999874 2221236789999999999999999
Q ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---------------cHHHHHHHH
Q psy8682 1782 AVDCFRSALQV--------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---------------FVRARYNLG 1838 (1956)
Q Consensus 1782 Aie~fekALel--------~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd---------------naeA~~~LA 1838 (1956)
|+.+|++++.. .|....++..+|.++..+|++++|+.+|+++++..+. ....+..++
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 99999999998 6667788999999999999999999999999986432 233455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccC
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPF 1896 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~ 1896 (1956)
..+...+.+.+|...+++++...|..+.++..+|.++...|++.+|+ .++++++.+.
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~ 308 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE-TLEEAAMRSR 308 (311)
T ss_dssp ------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHh
Confidence 66677778888899999999999999999999999999999998887 7777776553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=190.01 Aligned_cols=242 Identities=16% Similarity=0.118 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEP------DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK------- 1671 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldP------dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd------- 1671 (1956)
...++.+|..+...|++++|+.+|+++++..+ ..+.+++.+|.+|...|++++|+.++++++++.+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 34677899999999999999999999998742 24678999999999999999999999999987542
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
...++..+|.+|...|++++|+.++++++++ ...... ....+.++.++|.+|...|++++|+.++++
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~----------~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALEL----------AMDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------HHHcCC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2457889999999999999999999999998 222211 124567889999999999999999999999
Q ss_pred HHH-----hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCC---hHHHHH
Q psy8682 1752 AAR-----QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP-----DDSRLWNRLGASLANGNR---PEEAVE 1818 (1956)
Q Consensus 1752 ALe-----l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P-----dnaeA~~nLG~ay~qlGr---yeEAie 1818 (1956)
++. .+|.. ..++..+|.++..+|++++|+.++++++.+.+ .....+..++.++...++ +.+|+.
T Consensus 248 al~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 248 AAKVSREKVPDLL---PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHCGGGH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHhhCChhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999 55655 88999999999999999999999999999854 334567788888989998 888888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1819 AYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1819 ~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.+++. ...+....++..+|.+|...|++++|+.+|++++++...
T Consensus 325 ~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 325 YFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88772 223445567889999999999999999999999987654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=179.82 Aligned_cols=200 Identities=11% Similarity=0.059 Sum_probs=157.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHH
Q psy8682 1666 LSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQV 1745 (1956)
Q Consensus 1666 LeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEA 1745 (1956)
....|.++..++.+|..+...|++++|+..|++++.. .|. .+....+++.+|.++...|++++|
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~------------~~~~~~a~~~lg~~~~~~~~~~~A 71 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRT------------HEWAADAQFYLARAYYQNKEYLLA 71 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSC------------STTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCC------------CcchHHHHHHHHHHHHHhCcHHHH
Confidence 3457888888899999999999999999999999888 666 123356778888888889999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNL--------SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~--------lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
+..|+++++..|++.....+++.+|.++.. +|++++|+..|++++...|++..+...++.+....
T Consensus 72 ~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~------- 144 (261)
T 3qky_A 72 ASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR------- 144 (261)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH-------
Confidence 999999988888664446788888888888 88888888888888888888765554443322211
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---hhchhccccchhhh----------cccHHH
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT---HDGLTPHGLEPRAV----------KEMSDS 1884 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn---~dA~~~LG~l~~~l----------g~~seA 1884 (1956)
+.....++.+|.+|...|++++|+..|+++++..|++ +++++.+|.++..+ |++.++
T Consensus 145 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 145 ----------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 1123447899999999999999999999999999994 56999999999877 777777
Q ss_pred HHHHHHhccccCCCC
Q psy8682 1885 IWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1885 Iws~Lr~Al~l~gr~ 1899 (1956)
+ ..++.++...+..
T Consensus 215 ~-~~~~~~~~~~p~~ 228 (261)
T 3qky_A 215 V-ELYERLLQIFPDS 228 (261)
T ss_dssp H-HHHHHHHHHCTTC
T ss_pred H-HHHHHHHHHCCCC
Confidence 7 7888888888776
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=185.85 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=181.6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1620 DLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK------NLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1620 dydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd------naeAl~~LA~aY~~lGdydEAL 1693 (1956)
++++|+.+|+++ |.+|...|++++|+.+|.+++++.+. ...++.++|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 489999999887 66788999999999999999998532 2568999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCC---CHHHHHHH
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR-EIHQQVLSLYLNAARQCPSQSI---DPDVQNGL 1769 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l-GdyeEAle~LekALel~P~n~~---~a~a~~~L 1769 (1956)
.+|++++.+ +..... ....+.++.++|.+|... |++++|+.+|++++++.|.... ...++..+
T Consensus 98 ~~~~~Al~l----------~~~~g~---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 164 (292)
T 1qqe_A 98 DSLENAIQI----------FTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164 (292)
T ss_dssp HHHHHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHcCC---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 999999998 333321 223467788999999996 9999999999999999875411 14578999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH-----HHHH
Q psy8682 1770 GVLFNLSDEYDKAVDCFRSALQVRPDDSR-------LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA-----RYNL 1837 (1956)
Q Consensus 1770 G~ly~~lGdyeEAie~fekALel~Pdnae-------A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA-----~~~L 1837 (1956)
|.++..+|++++|+.+|++++.+.|++.. ++.++|.++..+|++++|+.+|+++++++|+...+ +..+
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 99999999999999999999999887643 68899999999999999999999999999986553 4556
Q ss_pred HHHHH--HcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1838 GITCV--HLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1838 A~ay~--klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
+.++. ..+++++|+..|++++.++|.+...+.
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 66664 467899999999999999987654433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.6e-17 Score=177.60 Aligned_cols=231 Identities=16% Similarity=0.131 Sum_probs=185.3
Q ss_pred HcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHH
Q psy8682 1617 RQGDLPSAILYLEAAAKQ--------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE--------PKNLEALMAIS 1680 (1956)
Q Consensus 1617 k~GdydEAIe~fekALel--------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd--------PdnaeAl~~LA 1680 (1956)
..|++++|+.+|+++++. .|..+.++..+|.++...|++++|+.+|++++++. |....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 356777777777777763 25567889999999999999999999999999873 55667899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ----- 1755 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel----- 1755 (1956)
.+|...|++++|+.++++++.. +....... .+....++.++|.++...|++++|+.+++++++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEI----------REKVLGKF-HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH----------HHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhccHHHHHHHHHHHHHH----------HHHHcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988 43332111 2566788999999999999999999999999998
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCChH------HHH
Q psy8682 1756 ---CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV---------RPDDSRLWNRLGASLANGNRPE------EAV 1817 (1956)
Q Consensus 1756 ---~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel---------~PdnaeA~~nLG~ay~qlGrye------EAi 1817 (1956)
.|.. ..++..+|.++..+|++++|+.+|++++++ .+....++..++..+...+... ++.
T Consensus 162 ~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 162 GPDDPNV---AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp CTTCHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred CCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5554 788999999999999999999999999987 4555667778887777655544 333
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
..++......|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 239 SWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34443333456677899999999999999999999999999763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=179.37 Aligned_cols=282 Identities=11% Similarity=-0.062 Sum_probs=227.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA-----EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL----- 1673 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdna-----eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna----- 1673 (1956)
..+.+..+|..+...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.+...
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 356778899999999999999999999999887552 2678999999999999999999999998765332
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1674 -EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1674 -eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
.++..+|.++...|++++|+.++++++.. ........ .+.....+.++|.++...|++++|..+++++
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~----------~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQL----------INEQHLEQ-LPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTTCTT-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HHHhcccc-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34788999999999999999999999988 22221100 1235567788999999999999999999999
Q ss_pred HHhCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-HHHH----HHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1753 ARQCPSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD--D-SRLW----NRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1753 Lel~P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd--n-aeA~----~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+...+.. .....++..+|.++...|++++|..++++++.+.+. . .... ..++.++...|++++|...++++
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9998764 112467889999999999999999999999987432 2 2211 13456688999999999999999
Q ss_pred HhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh------hchhccccchhhhcccHHHHHHHHHhcc
Q psy8682 1824 LQLSPGF----VRARYNLGITCVHLGANTQAVEHFLTALNQQAATH------DGLTPHGLEPRAVKEMSDSIWYSLRGFH 1893 (1956)
Q Consensus 1824 LeL~Pdn----aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~------dA~~~LG~l~~~lg~~seAIws~Lr~Al 1893 (1956)
+...+.. ...+..+|.++...|++++|...+++++...+... .++..+|.++...|+..++. ..++.++
T Consensus 242 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~l~~al 320 (373)
T 1hz4_A 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ-RVLLDAL 320 (373)
T ss_dssp CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH-HHHHHHH
Confidence 9876643 34678899999999999999999999998865422 47788899999999988776 7777776
Q ss_pred ccCC
Q psy8682 1894 PPFG 1897 (1956)
Q Consensus 1894 ~l~g 1897 (1956)
....
T Consensus 321 ~~~~ 324 (373)
T 1hz4_A 321 KLAN 324 (373)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-15 Score=155.52 Aligned_cols=175 Identities=18% Similarity=0.222 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
...+..+|.++...|++++|+..+++++.. .|. ...++..+|.++...|++++|+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 68 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAF---------------DVDVALHLGIAYVKTGAVDRGTELLERS 68 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----Ccc---------------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457888999999999999999999999888 555 3456788999999999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH
Q psy8682 1753 ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832 (1956)
Q Consensus 1753 Lel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae 1832 (1956)
++..|.+ ..++..+|.++...|++++|+.++++++...|.+..++..+|.++...|++++|+.+++++++..|.+..
T Consensus 69 ~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 145 (186)
T 3as5_A 69 LADAPDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145 (186)
T ss_dssp HHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH
Confidence 9999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
++..+|.++...|++++|+.++++++++.|++.....
T Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGGG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhHh
Confidence 9999999999999999999999999999999776543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-15 Score=176.90 Aligned_cols=242 Identities=10% Similarity=-0.003 Sum_probs=216.5
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH---
Q psy8682 1610 ALGQEKLRQGDL-PSAILYLEAAAKQEPDNAEVWLSLGISLAENE--QDPQAIAALSKCLSIEPKNLEALMAISICF--- 1683 (1956)
Q Consensus 1610 ~LG~aylk~Gdy-dEAIe~fekALeldPdnaeAl~~LA~ay~~lG--dyeEALe~yeKALeLdPdnaeAl~~LA~aY--- 1683 (1956)
.........|.+ ++|+.++.++|.++|++..+|+..+.++...| ++++++..+.+++..+|++..+|+..+.++
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 334444555555 68999999999999999999999999999999 999999999999999999999999999999
Q ss_pred -HHc---CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCC
Q psy8682 1684 -TNE---ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQ--QVLSLYLNAARQCP 1757 (1956)
Q Consensus 1684 -~~l---GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdye--EAle~LekALel~P 1757 (1956)
... +++++++.++.++++. +|+ ...++...+.++...|.++ ++++++.++++.+|
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~----~pk---------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSS----DPK---------------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HHhccccCCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 777 7899999999999999 777 4456677888888999998 99999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHhhC---
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDE------YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE-AVEAYHTALQLS--- 1827 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGd------yeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE-Aie~yeKALeL~--- 1827 (1956)
.+ ..+|..++.++...++ ++++++++++++..+|++..+|+.++.++...|+..+ ....+.+++.+.
T Consensus 178 ~N---~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 178 KN---NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp TC---HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred CC---HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 99 9999999999999988 9999999999999999999999999999999999666 445777777766
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCChhchhcccc
Q psy8682 1828 PGFVRARYNLGITCVHLGANTQAVEHFLTALN-QQAATHDGLTPHGL 1873 (1956)
Q Consensus 1828 PdnaeA~~~LA~ay~klGdyEEAie~yekALe-LdPdn~dA~~~LG~ 1873 (1956)
|.+..++..+|.+|.+.|+.++|+++|+.+.+ ++|-....|..++.
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 88899999999999999999999999999997 89997777766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-16 Score=200.84 Aligned_cols=193 Identities=11% Similarity=-0.010 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAA--------KQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekAL--------eldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~ 1677 (1956)
.+++..| ...|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..+++
T Consensus 395 ~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 471 (681)
T 2pzi_A 395 AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVW 471 (681)
T ss_dssp THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHH
Confidence 3666666 78899999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
.+|.+|...|++++|+..|++++++ +|+ ...+++++|.++...|++++ +..|+++++++|
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~l----~P~---------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P 531 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLDT----FPG---------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTND 531 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH----STT---------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence 9999999999999999999999999 776 34567899999999999999 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH-HHHHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA-VEAYHTAL 1824 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEA-ie~yeKAL 1824 (1956)
++ ..+++++|.++..+|++++|+..|+++++++|++..++.++|.++...++.++| ...+++|+
T Consensus 532 ~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 532 GV---ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp TC---HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred ch---HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 99 999999999999999999999999999999999999999999999887764433 33344333
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-15 Score=175.10 Aligned_cols=274 Identities=11% Similarity=0.005 Sum_probs=219.7
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCC-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHH
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPM-QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLG 1646 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~-~daeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA 1646 (1956)
.....+++++|+.. +++++...+.+.. ....++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 23 ~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 23 VAINDGNPDEAERL--AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHH--HHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44556789999988 8888877654332 134578889999999999999999999999876533 23578899
Q ss_pred HHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSIE--------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeLd--------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
.++...|++++|+.++++++++. |....++..+|.++...|++++|..++++++.. .+. . .
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~---~---~- 169 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV----LSS---Y---Q- 169 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTT---S---C-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hhc---c---C-
Confidence 99999999999999999999875 334567888999999999999999999999998 443 1 1
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ----NGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~----~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
.+.....+..+|.++...|++++|..++++++.+.+......... ..++.++...|++++|...+++++...+
T Consensus 170 ---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 170 ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp ---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred ---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 112345678899999999999999999999998754321111111 1345668899999999999999998776
Q ss_pred CC----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1795 DD----SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG------FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1795 dn----aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd------naeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.. ...+..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|...|++++.+.+.
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 53 346788999999999999999999999886432 2357889999999999999999999999998765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=203.70 Aligned_cols=200 Identities=11% Similarity=0.010 Sum_probs=177.6
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy8682 1633 KQEPDNAEVWLSLGISLAENEQDPQAIAALSKCL--------SIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQ 1704 (1956)
Q Consensus 1633 eldPdnaeAl~~LA~ay~~lGdyeEALe~yeKAL--------eLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~ 1704 (1956)
..+|+++.+++..| ...|++++|++.|++++ +.+|++..+++.+|.+|...|++++|+..|+++++.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-- 462 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-- 462 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Confidence 45788888887777 78899999999999999 899999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1705 ESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVD 1784 (1956)
Q Consensus 1705 e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie 1784 (1956)
+|+ ...+++++|.++...|++++|+..|+++++++|++ ..+++++|.++..+|++++ +.
T Consensus 463 --~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 463 --VGW---------------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp --HCC---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TC
T ss_pred --Ccc---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HH
Confidence 666 45678999999999999999999999999999999 9999999999999999999 99
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q psy8682 1785 CFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA-VEHFLTAL 1858 (1956)
Q Consensus 1785 ~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA-ie~yekAL 1858 (1956)
.|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..+++++|.++...++.++| ...+++|+
T Consensus 522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887763333 33444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=180.26 Aligned_cols=241 Identities=11% Similarity=0.024 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1641 VWLSLGISLAENEQDPQAIAALSKCLSIEP------KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdyeEALe~yeKALeLdP------dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.++.+|..+...|++++|+..|++++++.+ ..+.++..+|.+|...|++++|+.++++++++ +.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~----------~~ 172 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI----------YQ 172 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----------HH
Confidence 577899999999999999999999998742 24568999999999999999999999999998 32
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
..... ....+.++.++|.++...|++++|+.+|.+++++.+.. .....++.++|.+|..+|++++|+.+|++++.
T Consensus 173 ~~~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 173 NHPLY--SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp TSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22210 12467788999999999999999999999999875422 12356889999999999999999999999999
Q ss_pred -----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q psy8682 1792 -----VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS-----PGFVRARYNLGITCVHLGA---NTQAVEHFLTAL 1858 (1956)
Q Consensus 1792 -----l~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~-----PdnaeA~~~LA~ay~klGd---yEEAie~yekAL 1858 (1956)
.+|..+.++..+|.++..+|++++|+.++++++++. +.....+..++.++...|+ +.+|+.++++ .
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~ 329 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-K 329 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-T
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-C
Confidence 677788999999999999999999999999999984 4445567788889999998 8888888887 2
Q ss_pred HhcCCChhchhccccchhhhcccHHHHHHHHHhcccc
Q psy8682 1859 NQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1859 eLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l 1895 (1956)
...|.....+..+|.++...|++.+|+ .++++++.+
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~-~~~~~al~~ 365 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAA-AFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHH
Confidence 344555668889999999999998888 777776544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=176.42 Aligned_cols=218 Identities=9% Similarity=0.026 Sum_probs=175.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHH
Q psy8682 1611 LGQEKLRQGDLPSAILYLEAAAKQEPD------NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN------LEALMA 1678 (1956)
Q Consensus 1611 LG~aylk~GdydEAIe~fekALeldPd------naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn------aeAl~~ 1678 (1956)
.|.++...|++++|+.+|++++.+.+. .+.++..+|.+|..+|++++|+.+|++++++.+.. ..++.+
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 366788999999999999999988532 26789999999999999999999999999987643 457899
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1679 ISICFTNE-ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1679 LA~aY~~l-GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
+|.+|... |++++|+.+|++++++ .|. ... ......++.++|.++..+|++++|+.+|++++++.|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~----~~~------~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEW----YAQ------DQS---VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH----HHH------TTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHH----HHh------CCC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99999996 9999999999999998 332 110 112356788999999999999999999999999998
Q ss_pred CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--HCCChHHHHHHHHHHHhh
Q psy8682 1758 SQSI----DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR-----LWNRLGASLA--NGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1758 ~n~~----~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae-----A~~nLG~ay~--qlGryeEAie~yeKALeL 1826 (1956)
.+.. ...++..+|.++..+|++++|+.+|++++.++|.... .+..++.++. ..+++++|+..|++++.+
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 7611 1236889999999999999999999999999998654 3455666665 567899999999999999
Q ss_pred CCCcHHHHHHHHHHH
Q psy8682 1827 SPGFVRARYNLGITC 1841 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay 1841 (1956)
+|.....+..+-..+
T Consensus 270 ~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 270 DKWKITILNKIKESI 284 (292)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 988766666555444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-15 Score=153.90 Aligned_cols=170 Identities=15% Similarity=0.219 Sum_probs=105.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
....++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777766666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
...|++++|+.++++++.. .|. ....+..+|.++...|++++|+.+++++++..|.+ .
T Consensus 87 ~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~ 144 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA----NPI---------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---G 144 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---H
T ss_pred HHhcCHHHHHHHHHHHHhc----CcH---------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---h
Confidence 6666666666666666665 333 12234445555555555555555555555555544 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
.++..+|.++...|++++|+.++++++...|+
T Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 145 KVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 55555555555555555555555555544443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.8e-16 Score=188.98 Aligned_cols=288 Identities=13% Similarity=0.089 Sum_probs=186.5
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDL---PSAILYLEAAAKQEPDNAEVWLSLGISLAENE- 1653 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~Gdy---dEAIe~fekALeldPdnaeAl~~LA~ay~~lG- 1653 (1956)
.+++++|+.. |.++.+ +.++. +++.+|.++...|+. ++|+..|+++++. ++.+++.+|.++...+
T Consensus 16 ~g~~~~A~~~--~~~aa~--~g~~~----A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 16 RGDTVTAQQN--YQQLAE--LGYSE----AQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHH--HHHHHH--HTCCT----GGGTCC-------------------------------CHHHHHHHHHTC--
T ss_pred CCCHHHHHHH--HHHHHH--CCCHH----HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCC
Confidence 3567777776 666653 34444 677788887777777 7888888888755 6677788888666655
Q ss_pred ----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCCCCch-----hhhhhc----
Q psy8682 1654 ----QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLH---DALDTLKDKIRPGQESNPRPS-----AYKADA---- 1717 (1956)
Q Consensus 1654 ----dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdyd---EALe~leKALelg~e~dPd~e-----ay~~Ll---- 1717 (1956)
++++|+.+|+++++.. ++.+++.||.+|...+... ++...+.++... .+|... .|....
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~---g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA---GYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH---TCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCccc
Confidence 6778888888887743 3336677777776655432 233333333322 011100 000000
Q ss_pred --------CcchhhhhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc----CCHHHH
Q psy8682 1718 --------LPSKLTRLANHTLTFRSPLSSRE---IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS----DEYDKA 1782 (1956)
Q Consensus 1718 --------~~~Kl~e~a~a~lnLA~ay~~lG---dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l----GdyeEA 1782 (1956)
...-......+++.+|.+|...| ++++|+.+|+++.+..+.. +..++.+|.+|... +++++|
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---AQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCCCCCHHHH
Confidence 00000123347888999999999 9999999999999999887 77778999998665 799999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH-H--HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-----CHHHHHHHH
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGAS-L--ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG-----ANTQAVEHF 1854 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~a-y--~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG-----dyEEAie~y 1854 (1956)
+.+|+++. |.++.++++||.+ + ...+++++|+.+|+++.+. +++.++++||.+|. .| ++++|+.+|
T Consensus 237 ~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 237 QALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99999987 8899999999998 4 4689999999999999865 47899999999998 56 999999999
Q ss_pred HHHHHhcCCChhchhccccchhh----hcccHHHHHHHHHhccc
Q psy8682 1855 LTALNQQAATHDGLTPHGLEPRA----VKEMSDSIWYSLRGFHP 1894 (1956)
Q Consensus 1855 ekALeLdPdn~dA~~~LG~l~~~----lg~~seAIws~Lr~Al~ 1894 (1956)
+++. ++++.+++++|.+|.. ..++.+++ .+++++..
T Consensus 311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~Aa~ 350 (452)
T 3e4b_A 311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKAL-DHLLTAAR 350 (452)
T ss_dssp HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHH-HHHHHHHT
T ss_pred HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHH-HHHHHHHh
Confidence 9998 8899999999988865 23555565 66777655
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=168.34 Aligned_cols=147 Identities=13% Similarity=0.068 Sum_probs=134.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1731 nLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
.||.++...|++++|+..+++++...|++ +..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.+|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~---~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK---SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH---HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 37888999999999999999999998887 888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhcCCChhchhccccchhhhcc
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH-FLTALNQQAATHDGLTPHGLEPRAVKE 1880 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~-yekALeLdPdn~dA~~~LG~l~~~lg~ 1880 (1956)
|++++|+.+|+++++++|+++.+++++|.+|..+|++++|... +++|++++|+++.++..++.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999887765 599999999999999998888777664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-15 Score=163.96 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=169.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQE--------PDNAEVWLSLGISLAENEQDPQAIAALSKCLSI------- 1668 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeld--------PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL------- 1668 (1956)
.+.++..+|.++...|++++|+.+|+++++.. |....++..+|.++...|++++|+.+|++++++
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999999999873 556779999999999999999999999999998
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHH
Q psy8682 1669 -EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLS 1747 (1956)
Q Consensus 1669 -dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle 1747 (1956)
+|....++..+|.+|...|++++|+.+++++++. +....... .+....++..+|.++...|++++|+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI----------YATRLGPD-DPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------HHHHSCTT-CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4666788999999999999999999999999987 33332111 34567788999999999999999999
Q ss_pred HHHHHHHhCCC------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1748 LYLNAARQCPS------QSIDPDVQNGLGVLFNLSDE------YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1748 ~LekALel~P~------n~~~a~a~~~LG~ly~~lGd------yeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
+++++++..+. .......+..++..+...+. +.++...++.+....|....++..+|.+|..+|++++
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 270 (283)
T 3edt_B 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270 (283)
T ss_dssp HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987321 11225567777777665544 3344444444333445667889999999999999999
Q ss_pred HHHHHHHHHhhC
Q psy8682 1816 AVEAYHTALQLS 1827 (1956)
Q Consensus 1816 Aie~yeKALeL~ 1827 (1956)
|+.+|+++++..
T Consensus 271 A~~~~~~al~~~ 282 (283)
T 3edt_B 271 AHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=160.98 Aligned_cols=209 Identities=17% Similarity=0.126 Sum_probs=163.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE---ALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnae---Al~ 1677 (1956)
.+..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.+|...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46789999999999999999999999999999876 478999999999999999999999999999998864 788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
.+|.++...+.. .+ . .+..++..+...|++++|+..|+++++..|
T Consensus 83 ~~g~~~~~~~~~-----~~----~--------------------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL----Q--------------------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp HHHHHHHHHHC-------------------------------------------------CCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhhhhh-----hh----h--------------------------hhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 999988776532 11 1 123345677788999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH---HHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV---RAR 1834 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna---eA~ 1834 (1956)
++.....+...++.+... .......+|.+|...|++++|+..|+++++..|+++ .++
T Consensus 128 ~~~~a~~a~~~l~~~~~~--------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 187 (225)
T 2yhc_A 128 NSQYTTDATKRLVFLKDR--------------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDAL 187 (225)
T ss_dssp TCTTHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHH
Confidence 982222222233322211 112346789999999999999999999999999875 689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1835 YNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1835 ~~LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
+.+|.++.++|++++|+..++++....|++.+-
T Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 188 PLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 999999999999999999999999999987653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-15 Score=161.46 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLS----------------LGISLAENEQDPQAIAALSKCLS 1667 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~----------------LA~ay~~lGdyeEALe~yeKALe 1667 (1956)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999988888887 55555555555555555555555
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1668 LdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
++|++..++..+|.+|...|++++|+.+|++++++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555555555555554444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-14 Score=157.43 Aligned_cols=211 Identities=12% Similarity=0.013 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.+..++.+|..+...|++++|+..|+++++..|++. .+++.+|.+|...|++++|+..|+++++. .|+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~P~----- 73 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----NPT----- 73 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcC-----
Confidence 345666777777777777777777777777777764 46667777777777777777777777766 555
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
.+....+++.+|.++...+.. . ...+..++..+...|++++|+..|+++++..|
T Consensus 74 -------~~~~~~a~~~~g~~~~~~~~~----------------~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 74 -------HPNIDYVMYMRGLTNMALDDS----------------A---LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTCT
T ss_pred -------CCcHHHHHHHHHHHHHhhhhh----------------h---hhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 223445666666666554421 1 12233445555567788888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh---hchhcc
Q psy8682 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH---DGLTPH 1871 (1956)
Q Consensus 1795 dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~---dA~~~L 1871 (1956)
++..++..+..+.... .......+.+|.+|...|++++|+..|+++++..|+++ +++..+
T Consensus 128 ~~~~a~~a~~~l~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 128 NSQYTTDATKRLVFLK-----------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp TCTTHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 8765543322211110 01122446789999999999999999999999999986 689999
Q ss_pred ccchhhhcccHHHHHHHHHhccccCCCCcc
Q psy8682 1872 GLEPRAVKEMSDSIWYSLRGFHPPFGDKLP 1901 (1956)
Q Consensus 1872 G~l~~~lg~~seAIws~Lr~Al~l~gr~~~ 1901 (1956)
|.++..+|++.+++ ..++.+....+...+
T Consensus 191 ~~~~~~~g~~~~A~-~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 191 ENAYRQMQMNAQAE-KVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHTTCHHHHH-HHHHHHHHCCSCCCC
T ss_pred HHHHHHcCCcHHHH-HHHHHHHhhCCCchh
Confidence 99999999999887 777777666665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-14 Score=175.96 Aligned_cols=272 Identities=11% Similarity=0.071 Sum_probs=215.4
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
+++++|+.. |.++.. +.++. +++.+|..|...+...++...++...... +.++.+++.+|.+|...+.+++
T Consensus 88 ~~~~~A~~~--~~~Aa~--~g~~~----A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 88 AEHHEAESL--LKKAFA--NGEGN----TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHH--HHHHHH--TTCSS----CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred cCHHHHHHH--HHHHHH--CCCHH----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 477888887 888875 44555 88999999998776555444444333322 3567889999999999986554
Q ss_pred HH----HHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHH
Q psy8682 1658 AI----AALSKCLSIEPKNLEALMAISICFTNEA---CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730 (1956)
Q Consensus 1658 AL----e~yeKALeLdPdnaeAl~~LA~aY~~lG---dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~l 1730 (1956)
++ .+++.+...+|. +++.||.+|...| ++++|+..|+++.+. .|. .+..++
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~---------------~a~~~~ 217 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR----GTV---------------TAQRVD 217 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCS---------------CHHHHH
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCH---------------HHHHHH
Confidence 44 445555554554 9999999999999 999999999999998 444 334457
Q ss_pred HHHHHHHhc----CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1731 TFRSPLSSR----EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVL-F--NLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1731 nLA~ay~~l----GdyeEAle~LekALel~P~n~~~a~a~~~LG~l-y--~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
++|.+|... +++++|+.+|+++. |.+ +.+++.+|.+ + ...+++++|+.+|+++.+. .++.++++|
T Consensus 218 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~L 289 (452)
T 3e4b_A 218 SVARVLGDATLGTPDEKTAQALLEKIA---PGY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLL 289 (452)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 888998765 79999999999998 777 8899999998 4 5789999999999999865 589999999
Q ss_pred HHHHHHCC-----ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1804 GASLANGN-----RPEEAVEAYHTALQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1804 G~ay~qlG-----ryeEAie~yeKALeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
|.+|. .| ++++|+.+|+++. +.++.++++||.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHH
Confidence 99998 55 9999999999998 8999999999999887 4499999999999987 5678899999998
Q ss_pred hhh----hcccHHHHHHHHHhcccc
Q psy8682 1875 PRA----VKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1875 ~~~----lg~~seAIws~Lr~Al~l 1895 (1956)
|.. ..+...++ .++++|...
T Consensus 364 y~~G~g~~~d~~~A~-~~~~~A~~~ 387 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAY-VFSQLAKAQ 387 (452)
T ss_dssp HHSCTTBCCCHHHHH-HHHHHHHTT
T ss_pred HHhCCCCCCCHHHHH-HHHHHHHHC
Confidence 864 23444454 777777554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=154.75 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=132.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
.||.++...|++++|+..+++++.. + +.....++.+|.+|...|++++|+.+|+++++++|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~----~---------------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p 62 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS----P---------------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE 62 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS----H---------------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc----C---------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4788889999999999999999888 3 33555678899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH-HHHHHhhCCCcHHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA-YHTALQLSPGFVRARYN 1836 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~-yeKALeL~PdnaeA~~~ 1836 (1956)
++ +.++..+|.+|..+|++++|+.+|+++++++|+++.++.++|.+|...|++++|... ++++++++|+++.++..
T Consensus 63 ~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l 139 (150)
T 4ga2_A 63 RD---PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKL 139 (150)
T ss_dssp TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHH
T ss_pred CC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 99 999999999999999999999999999999999999999999999999999887766 59999999999999999
Q ss_pred HHHHHHHcCC
Q psy8682 1837 LGITCVHLGA 1846 (1956)
Q Consensus 1837 LA~ay~klGd 1846 (1956)
++.++...|+
T Consensus 140 ~~~ll~~~G~ 149 (150)
T 4ga2_A 140 KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhCc
Confidence 9999988885
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-14 Score=165.60 Aligned_cols=231 Identities=13% Similarity=0.002 Sum_probs=207.6
Q ss_pred HHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---
Q psy8682 1582 SRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQG--DLPSAILYLEAAAKQEPDNAEVWLSLGISL----AEN--- 1652 (1956)
Q Consensus 1582 eeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~G--dydEAIe~fekALeldPdnaeAl~~LA~ay----~~l--- 1652 (1956)
++|+.. +++++.++|++.. +|+.++.++...| ++++++.++.+++..+|++..+|+..+.++ ...
T Consensus 50 ~~aL~~--t~~~L~~nP~~~t----aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 50 ERALHI--TELGINELASHYT----IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp HHHHHH--HHHHHHHCTTCHH----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHCcHHHH----HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 578877 8888888776554 9999999999999 999999999999999999999999999999 777
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHH
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLH--DALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdyd--EALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~l 1730 (1956)
+++++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++. +|+ ...++.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----d~~---------------N~sAW~ 184 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----DLK---------------NNSAWS 184 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----CTT---------------CHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----CCC---------------CHHHHH
Confidence 89999999999999999999999999999999999999 999999999999 776 344567
Q ss_pred HHHHHHHhcCC------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCCHHHH
Q psy8682 1731 TFRSPLSSREI------HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK-AVDCFRSALQVR---PDDSRLW 1800 (1956)
Q Consensus 1731 nLA~ay~~lGd------yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeE-Aie~fekALel~---PdnaeA~ 1800 (1956)
..+.++...++ ++++++++.+++..+|.+ ..+|+.++.++...|+..+ ....+.+++.+. +.++.++
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n---~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN---PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC---ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 77788888877 999999999999999999 9999999999999998555 555777777766 8899999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHh-hCCCcHHHHHHHHHH
Q psy8682 1801 NRLGASLANGNRPEEAVEAYHTALQ-LSPGFVRARYNLGIT 1840 (1956)
Q Consensus 1801 ~nLG~ay~qlGryeEAie~yeKALe-L~PdnaeA~~~LA~a 1840 (1956)
..+|.+|.+.|+.++|+++|+++.+ .+|-....|...+..
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 9999999999999999999999997 799999999877654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=158.80 Aligned_cols=185 Identities=11% Similarity=0.096 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC-chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd-~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Le 1750 (1956)
..+.++..|..+...|++++|+..|+++++. +|+ ...+..................+|.++...|++++|+..|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556778888888888888888888888888 665 11111100000011222333449999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--hHHHHHHHHHHHhhCC
Q psy8682 1751 NAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR--PEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1751 kALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr--yeEAie~yeKALeL~P 1828 (1956)
++++++|++ +.++..+|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+ ...+...|++++...|
T Consensus 79 ~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 79 ELLQKAPNN---VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 999999999 99999999999999999999999999999999999999999999987764 4567778888764333
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1829 dnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
...+++.+|.++..+|++++|+.+|+++++++|+.
T Consensus 156 -~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 156 -MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 23478889999999999999999999999999984
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=169.45 Aligned_cols=210 Identities=13% Similarity=0.092 Sum_probs=152.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE-NEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTL 1696 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~-lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~l 1696 (1956)
.|++++|..+++++.+..+.. ++. .+++++|+.+|.++ |.+|...|++++|+.+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 467788888888887765532 111 47788888777765 45677788888888888
Q ss_pred HHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHH
Q psy8682 1697 KDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLF 1773 (1956)
Q Consensus 1697 eKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly 1773 (1956)
.+++.+ +..... ....+.++.++|.+|...|++++|+.+|++++++.+.. .....++.++|.+|
T Consensus 60 ~~al~~----------~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 60 LQEAEA----------HANNRS---LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp HHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------HHHcCC---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888877 333221 12445677788888888888888888888888775432 01245677888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHH
Q psy8682 1774 NLSDEYDKAVDCFRSALQVRPDD------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITC 1841 (1956)
Q Consensus 1774 ~~lGdyeEAie~fekALel~Pdn------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay 1841 (1956)
.. |++++|+.+|++++.+.+.. ..++.++|.+|..+|++++|+.+|++++.+.|.+ ..++..+|.++
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 77 88888888888888776543 4677888888888888888888888888765432 34677788888
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1842 VHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1842 ~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
..+|++++|+.+|++++ ++|+...
T Consensus 206 ~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 88888888888888888 8887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=147.60 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=96.6
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH
Q psy8682 1753 ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832 (1956)
Q Consensus 1753 Lel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae 1832 (1956)
..++|+. +..+..+|..|+..|+|++|+.+|+++++++|.++.++.++|.+|..+|++++|+..|+++++++|++..
T Consensus 6 a~inP~~---a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 6 AYINPEL---AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp -CCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 3456666 7778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
+++++|.++..+|++++|+.+|+++++++|++.+++..++.+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888888888888888877766543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-13 Score=158.29 Aligned_cols=236 Identities=15% Similarity=0.109 Sum_probs=203.1
Q ss_pred HHHHcCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1614 EKLRQGDLP-SAILYLEAAAKQEPDNAEVWLSLGISLAENEQ----------DPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1614 aylk~Gdyd-EAIe~fekALeldPdnaeAl~~LA~ay~~lGd----------yeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
...+.|.++ +|+.++.+++..+|++..+|+..+.++...+. +++++.++..++..+|.+..+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334566665 89999999999999999999999999988776 7899999999999999999999999999
Q ss_pred HHHcCC--HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCC
Q psy8682 1683 FTNEAC--LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREI-HQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1683 Y~~lGd--ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGd-yeEAle~LekALel~P~n 1759 (1956)
+...+. +++++.++.++++. +|+ ...++...+.++...|. ++++++++.++++.+|.+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~----dpr---------------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA----DER---------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred HhccCcccHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 999994 99999999999999 777 34456777888888888 699999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----------CChH
Q psy8682 1760 SIDPDVQNGLGVLFNLS--------------DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG-----------NRPE 1814 (1956)
Q Consensus 1760 ~~~a~a~~~LG~ly~~l--------------GdyeEAie~fekALel~PdnaeA~~nLG~ay~ql-----------Grye 1814 (1956)
..+|..++.++... +.++++++++.+++..+|++..+|+.+..++... +.++
T Consensus 179 ---~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~ 255 (331)
T 3dss_A 179 ---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ 255 (331)
T ss_dssp ---HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence 99999999998877 5689999999999999999999998776666655 4589
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1815 EAVEAYHTALQLSPGFVRARYNLGITCV---HLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1815 EAie~yeKALeL~PdnaeA~~~LA~ay~---klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
++++++++++++.|++..++..++.+.. ..|..+++..++.+.++++|....-|..+
T Consensus 256 ~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 256 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 9999999999999999766555554433 35788999999999999999865544433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=161.02 Aligned_cols=228 Identities=12% Similarity=0.075 Sum_probs=179.1
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLR-QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk-~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
++|++|... ++++.+..+.. ++. .+++++|+.+|.++ |.+|...|++++
T Consensus 5 ~~~~eA~~~--~~~a~k~~~~~--------------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 5 QKISEAHEH--IAKAEKYLKTS--------------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHH--HHHHHHHHCCC--------------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHH
T ss_pred chHHHHHHH--HHHHHHHcccc--------------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHH
Confidence 566777766 66666554421 111 58899999999876 668889999999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHH
Q psy8682 1658 AIAALSKCLSIEPKN------LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLT 1731 (1956)
Q Consensus 1658 ALe~yeKALeLdPdn------aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ln 1731 (1956)
|+.+|.+++++.+.. ..++.++|.+|..+|++++|+.+|++++.+ +..... ....+.++.+
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l----------~~~~g~---~~~~a~~~~~ 121 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM----------YVENGT---PDTAAMALDR 121 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH----------HHTTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----------HHHcCC---HHHHHHHHHH
Confidence 999999999886432 457889999999999999999999999998 433321 1245678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQS---IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD------SRLWNR 1802 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~---~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn------aeA~~n 1802 (1956)
+|.+|.. |++++|+.+|++++++.+... ....++.++|.+|..+|+|++|+.+|++++.+.+.+ ..++..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 9999999 999999999999999876531 125688999999999999999999999999986543 357889
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHH-----HHHHHHHHHHHcCCHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVR-----ARYNLGITCVHLGANTQAVE 1852 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~Pdnae-----A~~~LA~ay~klGdyEEAie 1852 (1956)
+|.++..+|++++|+.+|++++ ++|.... ....++.++ ..|+.+.+..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999999999999999999 9987532 344555555 5666554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-13 Score=178.94 Aligned_cols=223 Identities=16% Similarity=0.129 Sum_probs=190.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
...+|+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..|.+..++. .+-..+|.+|
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHH
Confidence 4569999999999999999999999885 789999999999999999999999999999988542 2334699999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
.+++++++ ++.| +. .++ ...+..+|..+...|+|++|+.+|.++ .
T Consensus 1178 AKl~rlee-le~f---I~-----~~n----------------~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~----- 1222 (1630)
T 1xi4_A 1178 AKTNRLAE-LEEF---IN-----GPN----------------NAHIQQVGDRCYDEKMYDAAKLLYNNV-----S----- 1222 (1630)
T ss_pred HhhcCHHH-HHHH---Hh-----CCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHhh-----h-----
Confidence 99999885 4444 22 222 124567999999999999999999996 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
.|..+|.+|.++|++++|++++++| .+..+|...+.++...|+|..|..+... +..+ ++.+..++..|..
T Consensus 1223 -ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1223 -NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQD 1292 (1630)
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHH
Confidence 4899999999999999999999998 6679999999999999999999998874 4444 4556689999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
.|.+++|+.++++++.+++.+...+..+|.++.+
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 9999999999999999999999999899888853
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=172.14 Aligned_cols=165 Identities=18% Similarity=0.077 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV 1765 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a 1765 (1956)
.|++++|+..|+++++. +|+ ...++..+|.++...|++++|+..|+++++.+|++ ..+
T Consensus 2 ~g~~~~A~~~~~~al~~----~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 59 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----RPQ---------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEA 59 (568)
T ss_dssp -----------------------C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---HHH
T ss_pred CccHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Confidence 47899999999999998 665 45678899999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL- 1844 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl- 1844 (1956)
+..+|.+|..+|++++|+.+|+++++++|++..++.++|.+|..+|++++|+.+|+++++++|++..++.++|.++..+
T Consensus 60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1845 --GANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1845 --GdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
|++++|+..|+++++.+|++...+..++
T Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999988888777
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=156.44 Aligned_cols=168 Identities=12% Similarity=0.120 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
|.+...++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++.. +|+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----~p~------ 183 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----DQD------ 183 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG----GCS------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh----hcc------
Confidence 7888889999999999999999999999999999999999999999999999999999999988887 565
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
........+..+...++.++|+..|++++..+|++ ..+++.+|.++...|++++|+..|+++++.+|+
T Consensus 184 ---------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~---~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 184 ---------TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED---AALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp ---------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 11223445555666777777888888888888887 778888888888888888888888888888877
Q ss_pred C--HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1796 D--SRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1796 n--aeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
+ ..++..+|.++..+|+.++|+..|++++.
T Consensus 252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7 77778888888888888888877777764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-13 Score=137.91 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=112.4
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
|+.+.++.++|..++..|++++|+..|+++++++|.+ +.++..+|.+|..+|++++|+..|+++++++|+++.+|..
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 5678889999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
+|.++..+|++++|+..|+++++++|++..++..|+.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999998764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=155.91 Aligned_cols=170 Identities=15% Similarity=0.126 Sum_probs=152.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHH
Q psy8682 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL 1748 (1956)
Q Consensus 1669 dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~ 1748 (1956)
.|++...+..+|..+...|++++|+..|+++++. +|+ ...+++.+|.++...|++++|+..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~---------------~~~a~~~la~~~~~~g~~~~A~~~ 173 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL----SNQ---------------NGEIGLLLAETLIALNRSEDAEAV 173 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTS---------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCc---------------chhHHHHHHHHHHHCCCHHHHHHH
Confidence 3888889999999999999999999999999999 776 456778899999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1749 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1749 LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
+++++..+|+. .......+..+...++.++|+..|++++..+|+++.+++++|.++...|++++|+..|+++++.+|
T Consensus 174 l~~~~~~~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 174 LXTIPLQDQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HTTSCGGGCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhCchhhcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 99999999976 666667777788888999999999999999999999999999999999999999999999999999
Q ss_pred Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1829 GF--VRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1829 dn--aeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
++ ..++.+++.++..+|+.++|...|++++..
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 88 889999999999999999999999998863
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=169.92 Aligned_cols=163 Identities=18% Similarity=0.179 Sum_probs=77.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1619 GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1619 GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leK 1698 (1956)
|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555666666666555655555666666666666666666666666655555555555555555555555555555555
Q ss_pred HHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc--
Q psy8682 1699 KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-- 1776 (1956)
Q Consensus 1699 ALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-- 1776 (1956)
+++. +|+ ...++.++|.++...|++++|+..|+++++.+|++ ..++..+|.++..+
T Consensus 83 al~~----~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 83 ASDA----APE---------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---PYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHH----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTC
T ss_pred HHhc----CCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhc
Confidence 5555 333 22334445555555555555555555555555544 44555555555555
Q ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1777 -DEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1777 -GdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
|++++|+..|+++++.+|.+...+..+
T Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred cccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 555555555555555555444443333
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=145.91 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1640 EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1640 eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 345555555555555555555555555555555555555555555555555555555555444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=146.21 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~ 1685 (1956)
+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++...| ++..+..++.+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888888887 66544333322110
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV 1765 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a 1765 (1956)
. .+...+|+..++++++.+|++ +.+
T Consensus 86 ~----------------------------------------------------~~~~~~a~~~~~~al~~~P~~---~~~ 110 (176)
T 2r5s_A 86 Q----------------------------------------------------QAAESPELKRLEQELAANPDN---FEL 110 (176)
T ss_dssp H----------------------------------------------------HHTSCHHHHHHHHHHHHSTTC---HHH
T ss_pred h----------------------------------------------------hcccchHHHHHHHHHHhCCCC---HHH
Confidence 0 000112456666666677766 667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDD--SRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~Pdn--aeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++..+|+.++|+..|++++.
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 7777777777777777777777777776654 44666777777777777777777766653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=126.66 Aligned_cols=134 Identities=24% Similarity=0.415 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGAS 1806 (1956)
Q Consensus 1727 ~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~a 1806 (1956)
.+++.+|.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 357789999999999999999999999999988 89999999999999999999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1807 LANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1807 y~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+...|++++|+..+++++...|.+..++..+|.++...|++++|+.+|++++..+|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999999999986
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-12 Score=152.46 Aligned_cols=230 Identities=10% Similarity=0.011 Sum_probs=193.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-QDPQAIAALSKCLSIEPKNLEALMAISICFTNE-A-CLHD 1691 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l-G-dydE 1691 (1956)
....+..++|+.++.+++.++|++..+|+..+.++...| .+++++..+.+++..+|++..+|+..+.++... + ++++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 334455679999999999999999999999999999999 599999999999999999999999999999998 8 8999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCCCCH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQ--------QVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdye--------EAle~LekALel~P~n~~~a 1763 (1956)
++.++.++++. +|+ ...++...+.++...|.++ ++++++.++++.+|.+ .
T Consensus 144 EL~~~~k~L~~----dpk---------------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N---~ 201 (349)
T 3q7a_A 144 EIEYIHGSLLP----DPK---------------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN---N 201 (349)
T ss_dssp HHHHHHHHTSS----CTT---------------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC---H
T ss_pred HHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC---H
Confidence 99999999999 777 3345566666666666666 9999999999999999 9
Q ss_pred HHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh--------------------HHH
Q psy8682 1764 DVQNGLGVLFNLSDE-------YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP--------------------EEA 1816 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGd-------yeEAie~fekALel~PdnaeA~~nLG~ay~qlGry--------------------eEA 1816 (1956)
.+|..++.++...++ ++++++++++++.++|++..+|+.+..++...|+. .+-
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETV 281 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhH
Confidence 999999999999987 79999999999999999999999999999988875 122
Q ss_pred HHHHHHHHhhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhcCCChh
Q psy8682 1817 VEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL-NQQAATHD 1866 (1956)
Q Consensus 1817 ie~yeKALeL~------PdnaeA~~~LA~ay~klGdyEEAie~yekAL-eLdPdn~d 1866 (1956)
.......+... +....++..|+.+|...|+.++|+++|+... +.+|-...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 22222222222 4678899999999999999999999999986 56775333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-14 Score=149.45 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1745 VLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1745 Ale~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
+-..++++++++|++ ..+++.+|.++...|++++|+..|++++.++|+++.+|.++|.+|..+|++++|+.+|++++
T Consensus 21 ~~~~l~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 21 SGATLKDINAIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp TSCCTGGGCCSCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHhCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 334566778888988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1825 QLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1825 eL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+++|+++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999854
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-12 Score=141.73 Aligned_cols=174 Identities=13% Similarity=0.090 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q psy8682 1623 SAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA----CLHDALDTLKD 1698 (1956)
Q Consensus 1623 EAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lG----dydEALe~leK 1698 (1956)
+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.||.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 455666666553 55666666666666666666666666666553 456666666666665 4 56666666666
Q ss_pred HHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC--CCCCCHHHHHHHHHH
Q psy8682 1699 KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS----REIHQQVLSLYLNAARQCP--SQSIDPDVQNGLGVL 1772 (1956)
Q Consensus 1699 ALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~----lGdyeEAle~LekALel~P--~n~~~a~a~~~LG~l 1772 (1956)
+.+. ..+.+++++|.+|.. .+++++|+.+|+++++..+ .. +.+++.||.+
T Consensus 79 A~~~---------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~---~~a~~~Lg~~ 134 (212)
T 3rjv_A 79 AVEA---------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA---VDAQMLLGLI 134 (212)
T ss_dssp HHHT---------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH---HHHHHHHHHH
T ss_pred HHHC---------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch---HHHHHHHHHH
Confidence 6544 123345555666655 5566666666666665554 12 4556666666
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-----ChHHHHHHHHHHHhh
Q psy8682 1773 FNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG-N-----RPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1773 y~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql-G-----ryeEAie~yeKALeL 1826 (1956)
|.. .+++++|+.+|+++++. +.++.++++||.+|... | ++++|+.+|+++++.
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 665 55666666666666655 44455566666665543 2 566666666666554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-12 Score=143.50 Aligned_cols=184 Identities=10% Similarity=-0.010 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. ..+.+++++|.+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------------------g~~~a~~~lg~~ 59 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---------------------GDGDALALLAQL 59 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------------------TCHHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------------------CCHHHHHHHHHH
Confidence 3578899999876 78999999999999999999999999999877 245678899999
Q ss_pred HHhcC----CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q psy8682 1736 LSSRE----IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRP--DDSRLWNRLGA 1805 (1956)
Q Consensus 1736 y~~lG----dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~----lGdyeEAie~fekALel~P--dnaeA~~nLG~ 1805 (1956)
|.. + ++++|+.+|+++.+. .+ +.+++.+|.+|.. .+++++|+.+|+++++..+ .++.++++||.
T Consensus 60 y~~-~g~~~~~~~A~~~~~~A~~~--g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 60 KIR-NPQQADYPQARQLAEKAVEA--GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133 (212)
T ss_dssp TTS-STTSCCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred HHc-CCCCCCHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 998 7 999999999999764 55 8899999999987 8999999999999999887 35899999999
Q ss_pred HHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1806 SLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL-G-----ANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1806 ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl-G-----dyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
+|.. .+++++|+.+|+++++. +.++.++++||.+|... | ++++|+.+|+++.+.. +..+...+
T Consensus 134 ~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l 206 (212)
T 3rjv_A 134 IYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEF 206 (212)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 9999 89999999999999998 67788999999999875 3 8999999999999884 33444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-11 Score=147.53 Aligned_cols=232 Identities=11% Similarity=0.018 Sum_probs=194.4
Q ss_pred HHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1582 SRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGD----------LPSAILYLEAAAKQEPDNAEVWLSLGISLAE 1651 (1956)
Q Consensus 1582 eeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~Gd----------ydEAIe~fekALeldPdnaeAl~~LA~ay~~ 1651 (1956)
++|+.. +++++.++|++. .+|..++.++...+. +++++.++..++..+|.+..+|+..+.++..
T Consensus 47 ~eaL~~--t~~~L~~nP~~y----taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 47 ESVLEL--TSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HHHHHH--HHHHHTTCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHCchhH----HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 366776 777887766654 599999999988776 7899999999999999999999999999999
Q ss_pred cCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHH
Q psy8682 1652 NEQ--DPQAIAALSKCLSIEPKNLEALMAISICFTNEAC-LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728 (1956)
Q Consensus 1652 lGd--yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGd-ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a 1728 (1956)
.++ +++++.++.++++.+|.+..+|...+.++...|. ++++++++.++++. +|. ...+
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~----~p~---------------N~SA 181 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR----NFS---------------NYSS 181 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CSC---------------CHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----CCC---------------CHHH
Confidence 994 8999999999999999999999999999999998 69999999999999 777 3345
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-----------CCHHHHH
Q psy8682 1729 TLTFRSPLSSR--------------EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-----------DEYDKAV 1783 (1956)
Q Consensus 1729 ~lnLA~ay~~l--------------GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-----------GdyeEAi 1783 (1956)
+..++.++... +.++++++++.+++..+|++ ..+|+.+..++... +.+++++
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d---~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND---QSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 55666666554 56899999999999999999 99997666665554 4689999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH---HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1784 DCFRSALQVRPDDSRLWNRLGASLA---NGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1784 e~fekALel~PdnaeA~~nLG~ay~---qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
+++++++++.|++...+..++.+.. ..|..+++..++.+.++++|....-|..++.-+
T Consensus 259 ~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 259 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 9999999999999655544444332 367889999999999999999887777766544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-12 Score=170.90 Aligned_cols=255 Identities=15% Similarity=0.067 Sum_probs=209.6
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
+....++|++|+.+ |.++ + ++..++..|.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+++
T Consensus 1114 Aql~~G~~kEAIds--YiKA-----d----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDS--YIKA-----D----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTN 1181 (1630)
T ss_pred HHHhCCCHHHHHHH--HHhc-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhc
Confidence 44556789999998 7664 3 4559999999999999999999999999988754 233445999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHH
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFR 1733 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA 1733 (1956)
++++ ++.|. ..+ +...+..+|..+...|+|++|+.+|.++- .|..+|
T Consensus 1182 rlee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------------------------ny~rLA 1228 (1630)
T 1xi4_A 1182 RLAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------------------NFGRLA 1228 (1630)
T ss_pred CHHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------------------------HHHHHH
Confidence 9885 44442 233 44567789999999999999999998862 246678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
.++.++|++++|++.+++| .+ ..+|...+.++...|+|..|..+... +.. +++.+..++..|...|.+
T Consensus 1229 ~tLvkLge~q~AIEaarKA-----~n---~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh-----CC---HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCH
Confidence 9999999999999999998 34 67899999999999999999998774 433 455566889999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcC-----CChhchhccccchhhhcccHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVH--LGANTQAVEHFLTALNQQA-----ATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~k--lGdyEEAie~yekALeLdP-----dn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
++|+.++++++.+++.+...+..||.+|.+ -++..+++++|...+.+.| .++..|..+..+|..-+++..|+
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999999998899888888765 4578889999998888877 77778888888888888888777
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-14 Score=167.44 Aligned_cols=138 Identities=13% Similarity=0.098 Sum_probs=116.8
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID-------------PDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~-------------a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
+..+.++..+|.++...|++++|+..|++++++.|.+ .. ..++.++|.+|..+|++++|+.+|+++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~-~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE-SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc-ccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566778889999999999999999999999998886 10 478888888888888888888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhc
Q psy8682 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA-VEHFLTALNQQ 1861 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA-ie~yekALeLd 1861 (1956)
++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+|++++| ...|++++...
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888888888888 55677776543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-13 Score=141.51 Aligned_cols=120 Identities=15% Similarity=0.079 Sum_probs=114.0
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
-..|++++.++|.+ ..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++..+|++++|+.+|++++.
T Consensus 7 ~~~~~~al~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 7 GGTIAMLNEISSDT---LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CCSHHHHTTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35678889999988 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1826 L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
++|+++.+++++|.+|..+|++++|+.+|+++++++|+++...
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999999999987653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.4e-13 Score=154.48 Aligned_cols=222 Identities=11% Similarity=0.027 Sum_probs=177.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCCCCC-chhh
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI-------SICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY 1713 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L-------A~aY~~lGdydEALe~leKALelg~e~dPd-~eay 1713 (1956)
++..|..+ ..+++..|.+.|.+++.++|+..++|..+ +.++...+++.+++..+.+.+.+ .|. ....
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l----~p~~l~a~ 84 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI----SMSTLNAR 84 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC----CGGGGCCE
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC----Chhhhhhh
Confidence 34444444 46788888888888888888888888888 77888888888888888888887 665 0001
Q ss_pred hh---hc--CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1714 KA---DA--LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788 (1956)
Q Consensus 1714 ~~---Ll--~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fek 1788 (1956)
.. ++ ..............++.++...|++++|.+.|..++...|.. . +.+.+|.++...+++++|+.+|++
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~---~-~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH---L-VAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH---H-HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch---H-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 00 000112345667788999999999999999999999888887 6 999999999999999999999998
Q ss_pred HHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1789 ALQVRPDD--SRLWNRLGASLANGNRPEEAVEAYHTALQLS--PG-FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1789 ALel~Pdn--aeA~~nLG~ay~qlGryeEAie~yeKALeL~--Pd-naeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+....+.. ..+++.+|.++..+|++++|+.+|++++... |. ...+++++|.++.++|+.++|...|++++..+|+
T Consensus 161 a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 161 AGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred hhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 87653221 3589999999999999999999999998654 65 6789999999999999999999999999999999
Q ss_pred Chhchhcccc
Q psy8682 1864 THDGLTPHGL 1873 (1956)
Q Consensus 1864 n~dA~~~LG~ 1873 (1956)
+.++..|..
T Consensus 241 -~~~~~aL~~ 249 (282)
T 4f3v_A 241 -PKVAAALKD 249 (282)
T ss_dssp -HHHHHHHHC
T ss_pred -HHHHHHHhC
Confidence 777666544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-13 Score=156.92 Aligned_cols=210 Identities=11% Similarity=0.071 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhCCCCH----
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSL-------GISLAENEQDPQAIAALSKCLSIEPKNL---- 1673 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~L-------A~ay~~lGdyeEALe~yeKALeLdPdna---- 1673 (1956)
...+|..|..+ ..+++..|...|.+++..+|+.+++|..+ +.++...+++.+++..+++++.+.|...
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 34667777776 58999999999999999999999999999 8999999999999999999999876533
Q ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH
Q psy8682 1674 -----------------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL 1736 (1956)
Q Consensus 1674 -----------------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay 1736 (1956)
++...++.++...|+|++|.+.|..++.. .|. .. ..+.+|.++
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~---------------~~-~~~~~a~l~ 145 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSE---------------HL-VAWMKAVVY 145 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCH---------------HH-HHHHHHHHH
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCc---------------hH-HHHHHHHHH
Confidence 44556889999999999999999888776 444 33 678899999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCh
Q psy8682 1737 SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR--PD-DSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1737 ~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~--Pd-naeA~~nLG~ay~qlGry 1813 (1956)
...+++++|+.+|+++....+.. ....+++.+|.++..+|++++|+.+|++++.-. |. .+.+++.+|.++.++|+.
T Consensus 146 ~~~~r~~dA~~~l~~a~~~~d~~-~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 146 GAAERWTDVIDQVKSAGKWPDKF-LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp HHTTCHHHHHHHHTTGGGCSCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHhhccCCcc-cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 99999999999999776643211 113589999999999999999999999998654 55 667999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNL 1837 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~L 1837 (1956)
++|...|++++..+|+ ..+...|
T Consensus 225 deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 225 SAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-HHHHHHH
Confidence 9999999999999999 7766555
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-13 Score=136.07 Aligned_cols=122 Identities=17% Similarity=0.121 Sum_probs=110.7
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
..|++++..+|.+ ...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++.+
T Consensus 5 ~~l~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 5 GTLAMLRGLSEDT---LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp ----CCTTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHH---HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4667778888887 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
+|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.....+
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999999999999999999999988765443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-13 Score=163.45 Aligned_cols=258 Identities=14% Similarity=0.048 Sum_probs=145.7
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
.+..-.+++++|+.. |.++ .+ ...+...+..+...|++++|+.+++.+++..+ ++.+...++.+|.+.
T Consensus 40 ~A~l~~g~~~eAIds--fika-----~D----~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 40 KAQLQKGMVKEAIDS--YIKA-----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCHHHHHHH--HHcC-----CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHh
Confidence 344556778888887 6442 23 33888899999999999999999999888544 377788899999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
|++.++.++++. |+ ..++..+|..+...|+|++|+.+|.++ .. +..+
T Consensus 108 g~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-~n--------------------------~~~L 154 (449)
T 1b89_A 108 NRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-SN--------------------------FGRL 154 (449)
T ss_dssp -CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-TC--------------------------HHHH
T ss_pred CCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh-hh--------------------------HHHH
Confidence 999998888752 43 358999999999999999999999865 11 4667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
|.++..+|++++|++.++++ .+ +.+|...+.++...|+++.|..+... +.. +++-...+..+|.+.|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA-----~~---~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-----TC---HHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHc-----CC---chhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCC
Confidence 89999999999999999999 35 78899999999999999999877765 323 34445568889999999
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcC-----CChhchhccccchhhhcccHHHH
Q psy8682 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVH--LGANTQAVEHFLTALNQQA-----ATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1813 yeEAie~yeKALeL~PdnaeA~~~LA~ay~k--lGdyEEAie~yekALeLdP-----dn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
+++|+.++++++.+++.....+..||.+|.+ .++..++++.|...+.+.| .++..|..+..+|...+++..|+
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999999999999999999999988865 4678888888888888888 88889999999999999998887
Q ss_pred HH
Q psy8682 1886 WY 1887 (1956)
Q Consensus 1886 ws 1887 (1956)
..
T Consensus 303 ~t 304 (449)
T 1b89_A 303 IT 304 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=9.4e-13 Score=152.19 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
++..++.+|..++..|++++|+..|++++..+|+++.+++.+|.+|...|++++|+..|+++++++|++..+++.+|.+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q psy8682 1684 TNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALel 1702 (1956)
..+|++++|+..|++++++
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=151.26 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
|.++.++..+|..+...|++++|+..|+++++.+|++..++.++|.+|...|++++|+..+++++++ +|+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~------ 70 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQ------ 70 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTT------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCC------
Confidence 5678899999999999999999999999999999999999999999999999999999999999999 666
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS--IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~--~~a~a~~~LG~ly~~lGdyeEAie~fekALel~ 1793 (1956)
...+++.+|.++...|++++|+..|+++++++|++. ....++..+ +..++...........
T Consensus 71 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 71 ---------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--------RIAKKKRWNSIEERRI 133 (281)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--------HHHHHHHHHHHHHTCC
T ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 455778999999999999999999999999988651 111222211 1222333344444567
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCC
Q psy8682 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL-GANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1794 PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl-GdyEEAie~yekALeLdPd 1863 (1956)
+.+..+...++.++ .|++++|++.|+++++.+|++......++.++... +.+++|.+.|.++.+..+.
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKK 202 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 78888888887765 69999999999999999999988888888888777 7789999999998875433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-12 Score=135.53 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
...++.+|..+...|++++|+..|++++ .| + +.+++.+|.+|...|++++|+..|++++.++|+++.++.++|.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-H---SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4457889999999999999999999995 33 4 7899999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFV----------------RARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~Pdna----------------eA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
++..+|++++|+..|+++++..|.+. .+++++|.++..+|++++|+.+|+++++++|++.
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 99999999999999999999888765 9999999999999999999999999999999853
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-13 Score=160.71 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=142.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHH
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---------------SRLWNRL 1803 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---------------aeA~~nL 1803 (1956)
++++++|+..+++++...|.. +.++..+|.++...|++++|+.+|++++.+.|.+ ..++.++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~---a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQ---STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 455667777788888888887 8899999999999999999999999999999998 6999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHH
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSD 1883 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~se 1883 (1956)
|.+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..+|.++..++++.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhccccC
Q psy8682 1884 SIWYSLRGFHPPF 1896 (1956)
Q Consensus 1884 AIws~Lr~Al~l~ 1896 (1956)
+....++..+..+
T Consensus 283 a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 283 REKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8666666665444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=137.99 Aligned_cols=112 Identities=11% Similarity=0.113 Sum_probs=106.9
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
+++++.++|++ +++++.+|..++..|++++|+..|++++..+|+++.+|+.+|.+|...|++++|+.+|+++++++
T Consensus 25 l~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 25 LKDINAIPDDM----MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TGGGCCSCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 77888776664 55999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
|+++.+++++|.+|..+|++++|+.+|++++++ .|+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l----~~~ 136 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH----SND 136 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC
Confidence 999999999999999999999999999999999 777
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.37 E-value=6.2e-13 Score=163.69 Aligned_cols=222 Identities=15% Similarity=0.104 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
+.+|..+|.++.+.|++++|+..|.++ .++..+...+.++...|++++|+.+++.+.+..++ +.+...++.+|.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 349999999999999999999999774 46678999999999999999999999999886444 667889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
++|++.++.++++ .|+ ..++..+|..+...|++++|..+|.++ .+
T Consensus 106 Klg~l~e~e~f~~---------~pn----------------~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n----- 150 (449)
T 1b89_A 106 KTNRLAELEEFIN---------GPN----------------NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN----- 150 (449)
T ss_dssp ---CHHHHTTTTT---------CC--------------------------------CTTTHHHHHHHT-----TC-----
T ss_pred HhCCHHHHHHHHc---------CCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHh-----hh-----
Confidence 9999999876663 233 126788999999999999999999977 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
|..+|.++.++|+|++|+++++++ .++.+|..++.++...|+++.|..+... +...|+. ...++.+|.+.
T Consensus 151 -~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~ 220 (449)
T 1b89_A 151 -FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDR 220 (449)
T ss_dssp -HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHT
T ss_pred -HHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHC
Confidence 899999999999999999999999 5789999999999999999999887775 3344443 55688999999
Q ss_pred CCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1845 GANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
|++++|+.++++++.+++.+..++..+|.++.+
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998853
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=125.88 Aligned_cols=137 Identities=15% Similarity=0.082 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..+..+|..+...|++++|+..|.++++..|.+ ..++..+|.++...|++++|+.++++++..+|.++.++..+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 87 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456778899999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG--ITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA--~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
|.++..+|++++|+.+|+++++++|.+..++..++ ..+...|++++|+..+.++..+.+.
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 99999999999999999999999999998885544 4488899999999999998876543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-12 Score=135.13 Aligned_cols=130 Identities=17% Similarity=0.258 Sum_probs=120.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHCCCh-
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGAS-LANGNRP- 1813 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~a-y~qlGry- 1813 (1956)
+...|++++|+..++++++.+|.+ +.++..+|.+|...|++++|+.+|++++.++|+++.++..+|.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 456889999999999999999998 99999999999999999999999999999999999999999999 8899999
Q ss_pred -HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1814 -EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1814 -eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
++|+.+|+++++.+|++..+++.+|.++...|++++|+.+|++++.++|++....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999999999999999999999999999999999999999999976543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-11 Score=139.18 Aligned_cols=177 Identities=10% Similarity=0.091 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
..+...+..+...|++++|+..+.++++. .+. ... .......++.+|.++...|++++|+.++++++
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~----~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKK----EEY---HPE------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----CCC---CHH------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcc----ccC---Chh------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34556667777788888888888887776 333 000 11233345668888888899999999999998
Q ss_pred HhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1754 RQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL---QVRPDDS----RLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1754 el~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekAL---el~Pdna----eA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+..+.. .....++..+|.+|..+|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.+|+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 776543 1125588899999999999999999999998 4455543 68899999999999999999999999
Q ss_pred HhhCCC------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhcCC
Q psy8682 1824 LQLSPG------FVRARYNLGITCVHLGANTQA-VEHFLTALNQQAA 1863 (1956)
Q Consensus 1824 LeL~Pd------naeA~~~LA~ay~klGdyEEA-ie~yekALeLdPd 1863 (1956)
+++.+. ...+++++|.+|..+|++++| ..+|++|+.+...
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 987532 367899999999999999999 8889999987543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-11 Score=116.45 Aligned_cols=133 Identities=22% Similarity=0.379 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
+++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS 1758 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~ 1758 (1956)
|++++|+..+++++.. .|. ....+..+|.++...|++++|...+++++..+|.
T Consensus 83 ~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALEL----DPR---------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHh----CCC---------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 6666666666666655 333 1223445555566666666666666666555553
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-12 Score=125.54 Aligned_cols=109 Identities=18% Similarity=0.233 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..+..+|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++..+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhc------CCChhchhcc
Q psy8682 1843 HLGANTQAVEHFLTALNQQ------AATHDGLTPH 1871 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLd------Pdn~dA~~~L 1871 (1956)
.+|++++|+.+|+++++++ |++..++..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 7777777777777777777 5555444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-11 Score=142.62 Aligned_cols=232 Identities=13% Similarity=-0.024 Sum_probs=195.0
Q ss_pred HHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHH
Q psy8682 1581 FSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQG-DLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN-E-QDPQ 1657 (1956)
Q Consensus 1581 YeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~G-dydEAIe~fekALeldPdnaeAl~~LA~ay~~l-G-dyeE 1657 (1956)
.++|+.. +++++.++|++.. +|..++.++...| .+++++.++++++..+|++..+|+..+.++... + ++++
T Consensus 70 se~AL~l--t~~~L~~nP~~yt----aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 70 SERALEL--TEIIVRMNPAHYT----VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp SHHHHHH--HHHHHHHCTTCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CHHHHHH--HHHHHHhCchhHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 3567777 8888888776554 9999999999999 599999999999999999999999999999998 8 9999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH
Q psy8682 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLH--------DALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT 1729 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~LA~aY~~lGdyd--------EALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ 1729 (1956)
+++++.++++.+|.+..+|...+.++...|.++ +++++++++++. +|. ...++
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~----dp~---------------N~SAW 204 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV----DGR---------------NNSAW 204 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH----CTT---------------CHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh----CCC---------------CHHHH
Confidence 999999999999999999999999999988888 999999999999 776 44567
Q ss_pred HHHHHHHHhcCC-------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH--------------------HHH
Q psy8682 1730 LTFRSPLSSREI-------HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY--------------------DKA 1782 (1956)
Q Consensus 1730 lnLA~ay~~lGd-------yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdy--------------------eEA 1782 (1956)
...+.++...++ ++++++++.+++..+|.+ ..+|+.+..++...|+. .+-
T Consensus 205 ~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n---~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (349)
T 3q7a_A 205 GWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN---VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETV 281 (349)
T ss_dssp HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCCcccccccccccccccccccchhH
Confidence 778888888886 799999999999999999 99999988888877764 222
Q ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-hhCCCcHHHHHHHHHH
Q psy8682 1783 VDCFRSALQVR------PDDSRLWNRLGASLANGNRPEEAVEAYHTAL-QLSPGFVRARYNLGIT 1840 (1956)
Q Consensus 1783 ie~fekALel~------PdnaeA~~nLG~ay~qlGryeEAie~yeKAL-eL~PdnaeA~~~LA~a 1840 (1956)
.......+... +..+.++..|+.+|...|+.++|+++|+... +.+|-....|...+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 22222222222 4678899999999999999999999999987 6788888777766543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=120.92 Aligned_cols=118 Identities=9% Similarity=0.022 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..+..+|..+...|++++|+..|+++++.+|.+ +.++..+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 356678899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHc
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~------PdnaeA~~~LA~ay~kl 1844 (1956)
|.++..+|++++|+..|+++++++ |.+..++..++.+..++
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999998888877653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=130.04 Aligned_cols=112 Identities=21% Similarity=0.314 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..++.+|.++...|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|++..+++.+|.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
.+|++++|+.+|+++++++|++..++..++..
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999998887777653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.8e-11 Score=136.74 Aligned_cols=178 Identities=11% Similarity=0.077 Sum_probs=142.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
|.....+...+..+...|++++|++.+.++++..+... ..++.+|.++...|++++|+.++++++.. .+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~ 147 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ----QLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT----CCC
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----Hhc
Confidence 33445566778888888888888888888888776654 23567888899999999999999999987 332
Q ss_pred chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1710 PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA---RQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1710 ~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL---el~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
... ......++.++|.+|...|++++|+.+|++++ +..|.+ .....+++++|.+|..+|+|++|+.+
T Consensus 148 ---~~~------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~ 218 (293)
T 2qfc_A 148 ---GID------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp ---SSC------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CCc------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence 000 11245678999999999999999999999999 445553 01126899999999999999999999
Q ss_pred HHHHHHhCCC------CHHHHHHHHHHHHHCCChHHH-HHHHHHHHhh
Q psy8682 1786 FRSALQVRPD------DSRLWNRLGASLANGNRPEEA-VEAYHTALQL 1826 (1956)
Q Consensus 1786 fekALel~Pd------naeA~~nLG~ay~qlGryeEA-ie~yeKALeL 1826 (1956)
+++++.+.+. ...+++++|.+|..+|++++| ..+|++|+.+
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 9999987532 278899999999999999999 8889999875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-11 Score=116.12 Aligned_cols=122 Identities=23% Similarity=0.252 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+.....+..+|..+...|++++|+..+++++...|.+ ..++..+|.++...|++++|+.++++++...|+++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 3455566677777777777777777777777777766 6777777777777777777777777777777777777777
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdy 1847 (1956)
+|.++...|++++|+.+|+++++..|++..++..+|.++..+|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777777777777777777777766654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=122.05 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
..++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.+|+++++.+|.+..+++.+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34444445555555555555555555555545444555555555555555555555555555555554555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.+|++++|+.+|++++.++|++..++..++.++.
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5555555555555555555544444444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=140.04 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=76.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------H
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----------------R 1798 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna----------------e 1798 (1956)
.....|++++|.+.+.......+.. ...+..+|..+...|+|++|+..|++++.+.|.++ .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQS---AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3334444444444444333333333 44455555555555555555555555555555544 5
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhh
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAV 1878 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~l 1878 (1956)
++.++|.++..+|++++|+.+|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|+++.++..++.++...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666665555544
Q ss_pred ccc
Q psy8682 1879 KEM 1881 (1956)
Q Consensus 1879 g~~ 1881 (1956)
++.
T Consensus 170 ~~~ 172 (198)
T 2fbn_A 170 KEA 172 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-11 Score=117.63 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.++++++...|++..+++.+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhccc
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~ 1881 (1956)
..|++++|+.+|++++.++|+++.++..+|.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999988877765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-12 Score=160.38 Aligned_cols=188 Identities=12% Similarity=0.006 Sum_probs=164.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhh
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEAC----------LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGd----------ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e 1724 (1956)
.++|++.+.+++..+|++..+|+..+.++...|+ +++|+..++++++. +|+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~----~pK--------------- 105 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPK--------------- 105 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTT---------------
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----CCC---------------
Confidence 3577888888888888888888888888887777 89999999999999 777
Q ss_pred hHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1725 LANHTLTFRSPLSSRE--IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD-EYDKAVDCFRSALQVRPDDSRLWN 1801 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lG--dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG-dyeEAie~fekALel~PdnaeA~~ 1801 (1956)
...+|...+.++...+ ++++|++++.++++.+|.+ ..+|..++.++...| .+++++++++++++.+|.+..+|+
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN---FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 4456777888888999 7799999999999999999 999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHC--------------CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH------------HHHHHH
Q psy8682 1802 RLGASLANG--------------NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ------------AVEHFL 1855 (1956)
Q Consensus 1802 nLG~ay~ql--------------GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEE------------Aie~ye 1855 (1956)
.+|.++..+ +++++|++++.+|+.++|++..+|++++.++.+.+++++ |+.+|.
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~ 262 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFS 262 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEec
Confidence 999998875 567999999999999999999999999999999998777 666788
Q ss_pred HHHHhcCCC
Q psy8682 1856 TALNQQAAT 1864 (1956)
Q Consensus 1856 kALeLdPdn 1864 (1956)
+++.++|..
T Consensus 263 ~~i~~~~~~ 271 (567)
T 1dce_A 263 RPLTVGSRM 271 (567)
T ss_dssp EEECTTBTT
T ss_pred cceeccccc
Confidence 888888764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-12 Score=135.34 Aligned_cols=135 Identities=17% Similarity=0.136 Sum_probs=117.0
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS--ID-----------PDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~--~~-----------a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
...+..+..+|..+...|++++|+..|.+++.+.|.+. .. ..++.++|.++..+|++++|+.+++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45667788999999999999999999999999988870 00 289999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q psy8682 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV-EHFLTA 1857 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi-e~yekA 1857 (1956)
+.++|++..+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++. ..|.+.
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887776 334433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=8.4e-11 Score=126.98 Aligned_cols=150 Identities=12% Similarity=0.078 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
..++.+|.++...|++++|+..|++++.. . ..++.++|.++...|++++|+..|++++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP------H----------------SRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC------C----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC------C----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678899999999999999999887422 2 3467889999999999999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHCCChHHHH
Q psy8682 1754 RQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----------------RLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1754 el~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna----------------eA~~nLG~ay~qlGryeEAi 1817 (1956)
+.+|.+ ..+++.+|.+|..+|++++|+..|+++++..|.+. .++.++|.++..+|++++|+
T Consensus 65 ~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 65 NRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 999998 99999999999999999999999999999888766 99999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
.+|++++++.|++. .+..++|+..+.+....
T Consensus 142 ~~~~~al~~~p~~~------------~~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 142 EQLALATSMKSEPR------------HSKIDKAMECVWKQKLY 172 (213)
T ss_dssp HHHHHHHTTCCSGG------------GGHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCcccc------------cchHHHHHHHHHhcccc
Confidence 99999999999863 23455666666544433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-12 Score=161.13 Aligned_cols=153 Identities=13% Similarity=0.106 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---------------SRLWNRLGA 1805 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---------------aeA~~nLG~ 1805 (1956)
++++|+..+..++...|.. +..+..+|.+++.+|+|++|+..|++|+++.|.+ ..+++++|.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~---a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQ---AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554 5556666666666666666666666666666655 577777777
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
+|.++|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..++++.++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777776666
Q ss_pred HHHHHhccccC
Q psy8682 1886 WYSLRGFHPPF 1896 (1956)
Q Consensus 1886 ws~Lr~Al~l~ 1896 (1956)
...++..+..+
T Consensus 406 ~~~~~~~f~k~ 416 (457)
T 1kt0_A 406 RRIYANMFKKF 416 (457)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHhhh
Confidence 55555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.28 E-value=9.5e-11 Score=134.96 Aligned_cols=176 Identities=12% Similarity=-0.004 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAE------VWLSLGISLAENEQDPQAIAALSKCLSIEPKN------ 1672 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnae------Al~~LA~ay~~lGdyeEALe~yeKALeLdPdn------ 1672 (1956)
...+...+..+...|++++|+..+++++...+..+. .+..+|.++...+++++|+.+|++++++.+..
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 345556788899999999999999999998777655 33458888988999999999999999975432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
..++.++|.+|...|++++|+.+|+++++. +..... ..+....+++++|.+|..+|++++|+.+++++
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~----------~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQ----------LEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHhccc--chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 347899999999999999999999999976 322210 12455667888888888888888888888888
Q ss_pred HHhCCCC---CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q psy8682 1753 ARQCPSQ---SIDPDVQNGLGVLFNLSD-EYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1753 Lel~P~n---~~~a~a~~~LG~ly~~lG-dyeEAie~fekALel 1792 (1956)
+++.+.. ...+.+++.+|.+|..+| .+++|+.+|++|+.+
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8765432 123667788888888888 468888888887764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.4e-12 Score=159.64 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=174.4
Q ss_pred HHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1616 LRQGD-LPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ----------DPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1616 lk~Gd-ydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd----------yeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
...|+ .++|+..+.+++..+|++..+|+..+.++...|+ +++|++.++++++.+|++..+|+..+.++.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34454 4678999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HcC--CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCCC
Q psy8682 1685 NEA--CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE-IHQQVLSLYLNAARQCPSQSI 1761 (1956)
Q Consensus 1685 ~lG--dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG-dyeEAle~LekALel~P~n~~ 1761 (1956)
..+ ++++|+++++++++. +|+ ...+|...+.++...| .++++++++.++++.+|.+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~----d~~---------------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-- 177 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEA----DER---------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-- 177 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC--
T ss_pred HcccccHHHHHHHHHHHHhh----ccc---------------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC--
Confidence 999 779999999999999 777 3456777888888999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH------------
Q psy8682 1762 DPDVQNGLGVLFNLS--------------DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE------------ 1815 (1956)
Q Consensus 1762 ~a~a~~~LG~ly~~l--------------GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE------------ 1815 (1956)
..+|..++.++..+ +.+++|++++.+|+.++|++..+|+.++.++...+++++
T Consensus 178 -~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 256 (567)
T 1dce_A 178 -YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEAC 256 (567)
T ss_dssp -HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTE
T ss_pred -ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCce
Confidence 99999999998875 568999999999999999999999999999999999777
Q ss_pred HHHHHHHHHhhCCC
Q psy8682 1816 AVEAYHTALQLSPG 1829 (1956)
Q Consensus 1816 Aie~yeKALeL~Pd 1829 (1956)
|+.+|.+++.++|.
T Consensus 257 ~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 257 LSVCFSRPLTVGSR 270 (567)
T ss_dssp EEEEEEEEECTTBT
T ss_pred EEEEeccceecccc
Confidence 66778888877765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.28 E-value=8.3e-11 Score=139.36 Aligned_cols=248 Identities=11% Similarity=-0.039 Sum_probs=191.8
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
..|++.|..++.. +-++.+.++. ...+.+.+++..+|++.... ..+....+...++..+. ++
T Consensus 23 ~fy~G~yq~~i~e-----~~~~~~~~~~---~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~ 84 (310)
T 3mv2_B 23 NYYTGNFVQCLQE-----IEKFSKVTDN---TLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK 84 (310)
T ss_dssp HHTTTCHHHHTHH-----HHTSSCCCCH---HHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT
T ss_pred HHHhhHHHHHHHH-----HHhcCccchH---HHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc
Confidence 4578889988875 3344555443 46777888888899887421 12223335555555442 32
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ 1734 (1956)
|+..+++.++..+....++..+|.++...|++++|++.+.+.+.. +|. .....+...++.
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~----~~~-------------~~~lea~~l~vq 144 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN----DEA-------------EGTTELLLLAIE 144 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS----SCS-------------TTHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCC-------------cCcHHHHHHHHH
Confidence 889999988876666777889999999999999999999999887 542 134566778899
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCC----CCCCHHHHHHHH--HHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCPS----QSIDPDVQNGLG--VLFNLSD--EYDKAVDCFRSALQVRPD--DSRLWNRLG 1804 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P~----n~~~a~a~~~LG--~ly~~lG--dyeEAie~fekALel~Pd--naeA~~nLG 1804 (1956)
++...|+.+.|.+.++++.+.+|+ + -.+...++ .+....| ++.+|...|+++....|+ ....+.+
T Consensus 145 i~L~~~r~d~A~k~l~~~~~~~~d~~~~~---d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-- 219 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNYTNAIEDTVSGD---NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-- 219 (310)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHHH---HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--
T ss_pred HHHHCCCHHHHHHHHHHHHhcCccccccc---hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH--
Confidence 999999999999999999999982 1 23444444 4466566 999999999999888886 3344444
Q ss_pred HHHHHCCChHHHHHHHHHHHhh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQL----------SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL----------~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.+++.++.+.+|+++-+.
T Consensus 220 -~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 220 -LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp -HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred -HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 899999999999999988876 48899999999999999998 89999999999999998754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-11 Score=135.28 Aligned_cols=174 Identities=10% Similarity=0.070 Sum_probs=139.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q psy8682 1677 MAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC 1756 (1956)
Q Consensus 1677 ~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~ 1756 (1956)
...+..+...|++++|+..+++++.. .+. ... .......+..+|.++...+++++|+.+|++++...
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~----~~~---~~~------~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKK----EEY---HPE------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT----CCC---CHH------HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcc----ccC---ChH------HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh
Confidence 34566788889999999999999887 443 000 01123345568999999999999999999999976
Q ss_pred CCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1757 PSQSI---DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-------PDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1757 P~n~~---~a~a~~~LG~ly~~lGdyeEAie~fekALel~-------PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+.... ...++..+|.+|..+|++++|+.+|+++++.. +....+++++|.+|..+|++++|+.++++++++
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55411 24479999999999999999999999999532 223468999999999999999999999999987
Q ss_pred CCC------cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCC
Q psy8682 1827 SPG------FVRARYNLGITCVHLGA-NTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1827 ~Pd------naeA~~~LA~ay~klGd-yEEAie~yekALeLdPd 1863 (1956)
.+. .+.+++++|.+|..+|+ +++|+.+|++|+.+...
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 543 37899999999999995 69999999999987653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-11 Score=118.42 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+....++..+|.++...|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.+++++++..|.+..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 4577889999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGd 1846 (1956)
+|.++...|++++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988774
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=128.81 Aligned_cols=109 Identities=11% Similarity=0.061 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+.....++.+|.++...|++++|+..|++++..+|.+ +.++..+|.++..+|++++|+.+|++++.++|+++.++++
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4567788999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
+|.+|..+|++++|+.+|++++++.|+++...
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999999998876543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.4e-11 Score=123.84 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=109.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+..+..++.+|.++...|++++|+.+|+++++++|.+ +.+++.+|.+|..+|++++|+.+|+++++++|++..+++.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3567788999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
+|.+|..+|++++|+.+|+++++++|++..+++.++...
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999999988777666544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.1e-11 Score=119.07 Aligned_cols=101 Identities=18% Similarity=0.280 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..+..+|.++...|++++|+.+|++++..+|+++.++..+|.++..+|++++|+..|+++++++|++..+++.+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCC
Q psy8682 1843 HLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPd 1863 (1956)
.+|++++|+.+|++++.++|+
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999998
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-10 Score=117.64 Aligned_cols=135 Identities=11% Similarity=0.133 Sum_probs=120.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+..++.+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
...|++++|+.++++++.. +|. ... ......++..+...|++++|+..+.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~----~p~---~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV----KPH---DKD----------AKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH----STT---CHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh----CCC---CHH----------HHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999 776 111 112345566678889999999999887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=112.75 Aligned_cols=112 Identities=27% Similarity=0.487 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
.++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccch
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEP 1875 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~ 1875 (1956)
.|++++|+.+|++++.++|+++.++..+|.++
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 55555555555555555555555555544433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.4e-11 Score=121.59 Aligned_cols=116 Identities=8% Similarity=-0.012 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+.....++.+|..+...|++++|+..|++++..+|.+ +.++..+|.++..+|++++|+.+|++++.++|+++.+++.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4567788999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
+|.+|..+|++++|+.+|++++++.|+++.....+..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 999999999999999999999999998776554444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=112.55 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
..|++++|+.+|+++++++|+++.++..++.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666666666666666666666665555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.6e-11 Score=120.80 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-------HHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-------VRARY 1835 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-------aeA~~ 1835 (1956)
+.++..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666665543 24666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1836 NLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1836 ~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
++|.++..+|++++|+++|++++...|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7777777777777777777777777664
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.5e-11 Score=120.02 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|+++++++|++..+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 36777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhcCCChh
Q psy8682 1845 GANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~d 1866 (1956)
|++++|+..|+++++++|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 8888888888888888887543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-10 Score=108.70 Aligned_cols=117 Identities=24% Similarity=0.431 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
...+..+|.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 5678889999999999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
++...|++++|+..|+++++.+|++..++..+|.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999987765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=125.79 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQV------------------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel------------------~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
.+..+|..++..|+|++|+..|.+++.+ +|....++.++|.+|..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444444444445555555555544444 4555566677777777777777777777777777
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+|+++.+++.+|.+|..+|++++|+.+|++++.++|+++
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 777777777777777777777777777777777777665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.2e-11 Score=142.37 Aligned_cols=224 Identities=6% Similarity=-0.002 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
+.+..|..+...|+|++|+..|.++++..|.........+...... .... .++..+|.+|...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~----------~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRR-------NEQE----------TSILELGQLYVTM 68 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHH-------HHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHh-------hhHH----------HHHHHHHHHHHHC
Confidence 6778888888889999999999999888776533211111111111 1111 1234555556666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDP 1763 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a 1763 (1956)
|++++|++++.+++.. ...+. +..........++.++...|++++|+.++++++...+.. ....
T Consensus 69 ~~~~~a~~~~~~~~~~----------~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEY----------MMQFA---KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp TCHHHHHHHHHHTHHH----------HHTSC---HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred CCHHHHHHHHHHHHHH----------HHHcc---chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 6666666666555554 11111 001122233445555555666666666666665543211 1224
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC---Cc----
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVR------PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP---GF---- 1830 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~------PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P---dn---- 1830 (1956)
.++..+|.+|...|+|++|+..+++++... +....++..+|.+|..+|++++|..+|++++...+ ..
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 556666666666666666666666665431 22345566666666666666666666666665421 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1831 aeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
...+..+|.++...|++++|..+|.+++..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 234555666666666666666666666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.6e-11 Score=127.72 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhh------
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD-------D-----SRLWNRLGASLANGNRPEEAVEAYHTALQL------ 1826 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~Pd-------n-----aeA~~nLG~ay~qlGryeEAie~yeKALeL------ 1826 (1956)
.+..+|..+...|+|++|+..|+++++++|+ + ..+|.++|.++..+|++++|+.+|++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555555555555555555555555554 3 338888888888888888888888888888
Q ss_pred -CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1827 -SPGFVRAR----YNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1827 -~PdnaeA~----~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999 999999999999999999999999999998877665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-10 Score=108.01 Aligned_cols=114 Identities=19% Similarity=0.152 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
.+..+..+|..+...|++++|+..|++++...|.+ +.++..+|.++...|++++|+..+++++...|+++.++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 35678889999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
.++...|++++|+..|+++++.+|++..++..++.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999888775
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-10 Score=116.55 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD------ 1796 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn------ 1796 (1956)
.+.+.++.++|..+...|++++|+.+|+++++++|++ +.++.++|.+|..+|++++|+..|+++++++|++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 4667788999999999999999999999999999999 9999999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1797 -SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1797 -aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
..++.++|.++..+|++++|+.+|++++...|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 368899999999999999999999999999886
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=116.10 Aligned_cols=112 Identities=16% Similarity=0.087 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ 1839 (1956)
...++.+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+.+|+++++.+|++..+++.+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 7778888888888888888888888888888876 7888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1840 TCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1840 ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
++..+|++++|+.+|++++.++|++..++..++.+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 88888888888888888888888887776665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-11 Score=154.90 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
+.++..+|..+...|++++|+.+|+++++.+|.+ ..++..+|.+|..+|++++|+.+|+++++++|+++.+++++|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3445667888999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhcCCChhchhccc
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGIT--CVHLGANTQAVEHFL-----------TALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~a--y~klGdyEEAie~ye-----------kALeLdPdn~dA~~~LG 1872 (1956)
+|..+|++++|+.+|+++++++|++..++..++.+ +...|++++|++.++ +++.++|+...++...+
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 162 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG 162 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccc
Confidence 99999999999999999999999999999999998 889999999999999 99999999887777665
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=121.72 Aligned_cols=121 Identities=10% Similarity=0.054 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQ------------------CPSQSIDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel------------------~P~n~~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
..+..+..+|..+...|++++|+..|.+++.+ .|.. ..++.++|.+|..+|++++|+..
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN---IPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH---HHHHHHHHHHHHhcCcHHHHHHH
Confidence 35667889999999999999999999999998 5555 78999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCH
Q psy8682 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV-RARYNLGITCVHLGAN 1847 (1956)
Q Consensus 1786 fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna-eA~~~LA~ay~klGdy 1847 (1956)
+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++. .+...++.+....++.
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 6677777776554433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-10 Score=121.49 Aligned_cols=166 Identities=11% Similarity=-0.020 Sum_probs=122.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI------EPKNLEALMAISICFTNEAC 1688 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL------dPdnaeAl~~LA~aY~~lGd 1688 (1956)
++..|++++|...++.+....+..+.++..+|.++...|++++|+.++++++++ .+....++..+|.+|...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456899999999666555433366889999999999999999999999999984 34456789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHH
Q psy8682 1689 LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDV 1765 (1956)
Q Consensus 1689 ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a 1765 (1956)
+++|+.++++++.. ....... ......++.++|.++...|++++|+.++++++...+.. .....+
T Consensus 82 ~~~A~~~~~~al~~----------~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 82 WDAARRCFLEEREL----------LASLPED--PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHHHHHHH----------HHHSCCC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHcCcc--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999988 3222100 11345667888888888889999988888888764322 011234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
+..+|.++..+|++++|+.++++++.+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567777777777777777777777765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.5e-11 Score=118.82 Aligned_cols=110 Identities=34% Similarity=0.549 Sum_probs=99.1
Q ss_pred hhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q psy8682 1596 FAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675 (1956)
Q Consensus 1596 L~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeA 1675 (1956)
+...+|......++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..+
T Consensus 8 ~~~~~p~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 87 (121)
T 1hxi_A 8 FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87 (121)
T ss_dssp CCSSCGGGGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCCCccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34455543445789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1676 LMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1676 l~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
+..+|.+|...|++++|+..++++++. +|+
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~----~P~ 117 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLS----QPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CcC
Confidence 999999999999999999999999999 776
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=123.00 Aligned_cols=125 Identities=13% Similarity=0.174 Sum_probs=90.3
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHH
Q psy8682 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISIC-FTNEACL--HDA 1692 (1956)
Q Consensus 1616 lk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~a-Y~~lGdy--dEA 1692 (1956)
...|++++|+..|++++..+|+++.+++.+|.+|...|++++|+.+|+++++++|++..++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4567777788888888888888888888888888888888888888888888888777777777777 6677777 777
Q ss_pred HHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1693 LDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1693 Le~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
+.+++++++. +|. ...++..+|.++...|++++|+..|+++++..|.+
T Consensus 101 ~~~~~~al~~----~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKALAL----DSN---------------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHh----CCC---------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 7777777777 554 23455667777777777777777777777777765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-10 Score=114.39 Aligned_cols=119 Identities=14% Similarity=0.024 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..+..+|.++...|++++|+.+|.+++..+|.+ +.++..+|.++..+|++++|+..|++++.++|+++.++..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 356778999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHcC
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPG-----FVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~Pd-----naeA~~~LA~ay~klG 1845 (1956)
|.++..+|++++|+..|++++++.|+ +..+...+..+..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 6666666666655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-10 Score=110.26 Aligned_cols=107 Identities=23% Similarity=0.284 Sum_probs=96.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--cHHH
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG--FVRA 1833 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd--naeA 1833 (1956)
+|.+ ..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|+++++..|. +..+
T Consensus 2 ~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 2 VDQN---PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCSS---TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCc---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence 4555 6778889999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCh
Q psy8682 1834 RYNLGITCVHL-GANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1834 ~~~LA~ay~kl-GdyEEAie~yekALeLdPdn~ 1865 (1956)
+..+|.++..+ |++++|++++++++...|.++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999999 999999999999999988754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.6e-10 Score=119.47 Aligned_cols=165 Identities=10% Similarity=0.020 Sum_probs=106.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHH
Q psy8682 1649 LAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728 (1956)
Q Consensus 1649 y~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a 1728 (1956)
+...|++++|...++......+....++..+|.++...|++++|+.++++++.. +..... .+....+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~---~~~~~~~ 68 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ----------AQKSGD---HTAEHRA 68 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHTTCC---HHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----------HHHcCC---cHHHHHH
Confidence 356788999988655554433366778889999999999999999999999886 222220 2345566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQ---CPSQS-IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP--DD----SR 1798 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel---~P~n~-~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P--dn----ae 1798 (1956)
+.++|.++...|++++|+.++++++.+ .+++. ....++..+|.++..+|++++|+.++++++.+.+ .+ ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 777888888888888888888888776 33220 1244567777777777777777777777765422 11 12
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
++..+|.++...|++++|+.++++++++
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3455555555555555555555555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.7e-11 Score=140.17 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP-----------------DVQNGLGVLFNLSDEYDKAVDCF 1786 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a-----------------~a~~~LG~ly~~lGdyeEAie~f 1786 (1956)
..+..+..+|..+...|++++|+..|++++...|.+ . .+++++|.+|..+|+|++|+.+|
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~---~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD---FMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH---HHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc---hhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455667889999999999999999999999999886 3 24555555555555555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGIT-CVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1787 ekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~a-y~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..|+.+ ....+..+++...|.+++...|+++
T Consensus 254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 555555555555555555555555555555555555555555555555555555 2233444555555555555555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.8e-10 Score=112.08 Aligned_cols=105 Identities=18% Similarity=0.186 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---HHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS---RLWNRLGASLANGNRPEEAVEAYHTALQLSPGF---VRARYNLG 1838 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~Pdna---eA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn---aeA~~~LA 1838 (1956)
+++.+|.++...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 355666666777777777777777777666665 566677777777777777777777777777666 66677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
.++..+|++++|+.+|++++...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 7777777777777777777777776655433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=121.94 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=96.5
Q ss_pred hCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCC--------HHHHHHHHHHHHHcCCHHHH
Q psy8682 761 VRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMV--------ISNWIKYAQWEESQKQVDRA 832 (1956)
Q Consensus 761 kfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s--------~~lWlkYAqfE~~~Gd~ErA 832 (1956)
..|.+++.|..|+..+. +.+++..- .++.+.|.+|+|++...|.. +-+|++||.|+. .+|+++|
T Consensus 8 ~~p~~yd~W~~yl~llE------~~g~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e-i~D~d~a 79 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLE------KNSVPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA-IQEPDDA 79 (161)
T ss_dssp --CCSHHHHHHHHHHHH------HHTCSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH-HHCGGGC
T ss_pred eCCCCHHHHHHHHHHHH------HcCCCchh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH-hcCHHHH
Confidence 45899999999998877 33555333 67789999999999877543 568999999954 4899999
Q ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 833 RSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYK 886 (1956)
Q Consensus 833 RsIfERALs~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~k 886 (1956)
|.+|..+++.+.+-..+|+.|++||.++|++.+||.|..+++..+|+...+...
T Consensus 80 R~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 80 RDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 999999988777778999999999999999999999999999999988665443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.5e-10 Score=139.01 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=119.3
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID-------------PDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~-------------a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
+..+..+..+|..+...|++++|+..|++++++.|.+ .. ..+++++|.+|..+|+|++|+.+|+++
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~-~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME-YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc-ccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4567788999999999999999999999999999986 11 588999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHH
Q psy8682 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH-FLTA 1857 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~-yekA 1857 (1956)
+.++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..++++++|... |.+.
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888743 4433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.5e-10 Score=112.48 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---- 1796 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---- 1796 (1956)
..+.++..+|.++...|++++|+.+++++++..+.. .....++..+|.++...|++++|+.++++++.+.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 456778899999999999999999999999886543 1123588999999999999999999999999876442
Q ss_pred --HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1797 --SRLWNRLGASLANGNRPEEAVEAYHTALQLSP------GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1797 --aeA~~nLG~ay~qlGryeEAie~yeKALeL~P------dnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
..++..+|.++...|++++|+.++++++++.+ ....++..+|.++...|++++|+.++++++++...
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999998632 23567899999999999999999999999998765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-10 Score=110.10 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-------HHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-------VRARY 1835 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-------aeA~~ 1835 (1956)
+..+..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|++++...|.+ ..+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666655544 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1836 NLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1836 ~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
.+|.++...|++++|+.+|++++.+.| ++..+..++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 666666666666666666666666665 3444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.09 E-value=8.5e-10 Score=107.99 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD------- 1796 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn------- 1796 (1956)
..+..+..+|..+...|++++|+.+|.++++..|.+ +.++..+|.++...|++++|+.++++++...|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 345678899999999999999999999999999998 9999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1797 SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1797 aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
..++..+|.++...|++++|+.+|+++++..| +......++.+...++
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 5888888888776544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-09 Score=107.37 Aligned_cols=118 Identities=16% Similarity=0.113 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLG 1804 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG 1804 (1956)
+++.+|..+...|++++|+..|+++++..|++.....+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467889999999999999999999999999882233799999999999999999999999999999999 89999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
.++..+|++++|+..|+++++..|++..+...+..+....+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887766655544443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.3e-10 Score=122.35 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS-------Q--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV-- 1792 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~-------n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel-- 1792 (1956)
..+..+.++|..+...|++++|+..|+++++++|+ + +....+|.++|.++..+|+|++|+.+|+++|++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 35667889999999999999999999999999998 3 001239999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy8682 1793 -----RPDDSRLW----NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839 (1956)
Q Consensus 1793 -----~PdnaeA~----~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ 1839 (1956)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999 999999999999999999999999999887654444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.7e-10 Score=117.68 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHhhcccCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy8682 810 RMVISNWIKYAQWEESQKQV------DRARSIYERALDVDHR--------NITLWLKYTELEMRNRQVNHARNLWDRAVT 875 (1956)
Q Consensus 810 ~~s~~lWlkYAqfE~~~Gd~------ErARsIfERALs~~Pk--------~~dLWl~YadfE~k~gnierARsLFERAL~ 875 (1956)
+.+++.|..|+..+++.|+. ++.|.+|+||+...|- .+.||+.|+.|+ ..+++++||++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence 78899999999999988999 9999999999995443 368999999995 45999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 876 ILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 876 ~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
.+.+-+++|+.|++||.++||.++||+|+.+|+
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 866669999999999999999999999999998
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=109.95 Aligned_cols=121 Identities=15% Similarity=0.043 Sum_probs=110.3
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+.....++.+|..+...|++++|+.+|+++++..|++.....++..+|.+|...|++++|+.++++++...|++..++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 45677889999999999999999999999999988631125789999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
+|.++...|++++|+.+|+++++++|++..++..++.+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998888877543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=131.71 Aligned_cols=124 Identities=13% Similarity=0.145 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAAR----------------QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALe----------------l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fek 1788 (1956)
.+..+..+|..+...|++++|+..|+++++ ..|.. ..++.++|.+|..+|++++|+.++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA---LSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 345567789999999999999999999998 44444 55666666666666666666666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1789 ALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
+++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..++++++|.
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666665554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.2e-10 Score=136.01 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQ----------------VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALe----------------l~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+..+..+|..+...|+|++|+..|+++++ ..|.+..++.++|.+|..+|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 67788899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
+|++..+++.+|.+|..+|++++|+.+|++|++++|++..++..++.++..+++..++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888777765554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-10 Score=135.05 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS-----------------RLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna-----------------eA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
+..+..+|..+...|+|++|+.+|++++.+.|++. .+++++|.+|..+|++++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55688999999999999999999999999999876 4899999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1826 L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
++|++..+++++|.+|..+|++++|+.+|+++++++|+++.++..++.+........+.....+++++...+.
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999999999999999999999988655544444443555555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=108.85 Aligned_cols=143 Identities=10% Similarity=0.015 Sum_probs=109.4
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----
Q psy8682 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN---- 1672 (1956)
Q Consensus 1603 ~daeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn---- 1672 (1956)
..+.++..+|..+...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 356688899999999999999999999998875432 2478889999999999999999999988875432
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy8682 1673 --LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1673 --aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Le 1750 (1956)
..++..+|.++...|++++|+.++++++.. ...... .......+..+|.++...|++++|+.+++
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI----------AQELKD---RIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHccc---hHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 457788888899999999999999888877 222110 12345566777888888888888888888
Q ss_pred HHHHhCCC
Q psy8682 1751 NAARQCPS 1758 (1956)
Q Consensus 1751 kALel~P~ 1758 (1956)
+++++...
T Consensus 154 ~a~~~~~~ 161 (164)
T 3ro3_A 154 KHLEISRE 161 (164)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 87766443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=121.04 Aligned_cols=191 Identities=8% Similarity=-0.046 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy8682 1624 AILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP--KNLEALMAISICFTNEACLHDALDTLKDKIR 1701 (1956)
Q Consensus 1624 AIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdP--dnaeAl~~LA~aY~~lGdydEALe~leKALe 1701 (1956)
|+..|++.+...+....++..+|.++...|++++|++.+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 89999999887766777888999999999999999999999999887 8889999999999999999999999999988
Q ss_pred cCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC
Q psy8682 1702 PGQESNPRPSAYKADALPSKLTRLANHTLTFRSP--LSSRE--IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777 (1956)
Q Consensus 1702 lg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a--y~~lG--dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG 1777 (1956)
. +|+. + .........++.. ....| ++++|..+|+++.+..|+. .....+++ ++..+|
T Consensus 165 ~----~~d~-----~------~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~-~~~~lLln---~~~~~g 225 (310)
T 3mv2_B 165 A----IEDT-----V------SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW-KTQLGLLN---LHLQQR 225 (310)
T ss_dssp H----SCHH-----H------HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH-HHHHHHHH---HHHHHT
T ss_pred c----Cccc-----c------ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc-ccHHHHHH---HHHHcC
Confidence 8 5510 0 0011222334333 44444 9999999999999888862 00233333 899999
Q ss_pred CHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1778 EYDKAVDCFRSALQV----------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1778 dyeEAie~fekALel----------~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+..|+++.+.-
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 999999999988876 48899999999999999998 899999999999999986554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=102.73 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=95.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK--NLEALMAISI 1681 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd--naeAl~~LA~ 1681 (1956)
++..++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|+ +..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34488999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHhc
Q psy8682 1682 CFTNE-ACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1682 aY~~l-GdydEALe~leKALel 1702 (1956)
++... |++++|++++++++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 99999 9999999999999998
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-09 Score=127.87 Aligned_cols=216 Identities=8% Similarity=0.009 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCc-hhhhhh-cCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRP-SAYKAD-ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~-eay~~L-l~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
.+....|..+...|+|++|++.|.++++. .|.. ...... ...........++..+|.+|...|++++|.+++.+
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDK----DSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHS----CCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34566778888899999999999999988 5541 111111 10112345566788999999999999999999999
Q ss_pred HHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHH
Q psy8682 1752 AARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP------DDSRLWNRLGASLANGNRPEEAVEAYHT 1822 (1956)
Q Consensus 1752 ALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P------dnaeA~~nLG~ay~qlGryeEAie~yeK 1822 (1956)
++...+.. .....+...+|.++...|++++|+.++++++...+ ....++..+|.+|...|+|++|+..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 99876553 01124566788888899999999999999987642 2367899999999999999999999999
Q ss_pred HHhh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh-------hchhccccchhhhcccHHHHHHHH
Q psy8682 1823 ALQL------SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH-------DGLTPHGLEPRAVKEMSDSIWYSL 1889 (1956)
Q Consensus 1823 ALeL------~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~-------dA~~~LG~l~~~lg~~seAIws~L 1889 (1956)
++.. .+....++..+|.+|..+|++++|..+|++++.+.+... ..+..+|.++...+++.++. .++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~-~~~ 239 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF-SYF 239 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH-HHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH-HHH
Confidence 9875 234567899999999999999999999999998865432 34566777777788887766 555
Q ss_pred Hhccc
Q psy8682 1890 RGFHP 1894 (1956)
Q Consensus 1890 r~Al~ 1894 (1956)
..++.
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-10 Score=142.65 Aligned_cols=126 Identities=12% Similarity=0.172 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
..+..+|.++...|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|++..+++++|.+|..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccc--hhhhcccHHHHHHHHH
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLE--PRAVKEMSDSIWYSLR 1890 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l--~~~lg~~seAIws~Lr 1890 (1956)
+|++++|+.+|+++++++|++..++..++.+ +...|++.+|+ ..+.
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~-~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI-AGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 9999999999999999999999999999988 77778887777 5555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-10 Score=112.57 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=76.5
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1775 LSDEYDKAVDCFRSALQV---RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1775 ~lGdyeEAie~fekALel---~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
.+|++++|+.+|++++++ +|+++.++..+|.+|..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 367888888888888888 57778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCChhch
Q psy8682 1852 EHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1852 e~yekALeLdPdn~dA~ 1868 (1956)
.+|++++...|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888877653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=108.81 Aligned_cols=95 Identities=20% Similarity=0.185 Sum_probs=85.7
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q psy8682 1738 SREIHQQVLSLYLNAARQ---CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPE 1814 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel---~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGrye 1814 (1956)
..|++++|+.+|+++++. +|.+ ..++..+|.+|..+|++++|+.+|+++++.+|+++.++..+|.++..+|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL---AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence 468999999999999999 5776 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHH
Q psy8682 1815 EAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1815 EAie~yeKALeL~PdnaeA~~ 1835 (1956)
+|+..|++++...|+++....
T Consensus 79 ~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999887654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-09 Score=116.56 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR----------PEEAVEAYHTALQLSPGFVRARYNLGITCVHLG- 1845 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr----------yeEAie~yeKALeL~PdnaeA~~~LA~ay~klG- 1845 (1956)
+.+++|++.++++++++|+++.+|+++|.++..+++ +++|+..|++|++++|++..+|+++|.+|..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 344555555555555555555555555555554444 346666666666666666666666666666553
Q ss_pred ----------CHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1846 ----------ANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1846 ----------dyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
++++|+.+|++|++++|++...+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 677777777777777777654433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=7.8e-09 Score=111.50 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=85.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1737 SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY----------DKAVDCFRSALQVRPDDSRLWNRLGAS 1806 (1956)
Q Consensus 1737 ~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdy----------eEAie~fekALel~PdnaeA~~nLG~a 1806 (1956)
.+.+.+++|++.++++++++|++ +.+++++|.++..++++ ++|+..|++|++++|++..+|+++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~---aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 35677999999999999999999 99999999999998875 599999999999999999999999999
Q ss_pred HHHCC-----------ChHHHHHHHHHHHhhCCCcH
Q psy8682 1807 LANGN-----------RPEEAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1807 y~qlG-----------ryeEAie~yeKALeL~Pdna 1831 (1956)
|..+| ++++|+.+|++|++++|++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99885 89999999999999999975
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.6e-09 Score=100.16 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF------VRARYN 1836 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~ 1836 (1956)
+.++..+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 56677788888888888888888888888888888888888888888888888888888888888877 777778
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q psy8682 1837 LGITCVHLGANTQAVEHFL 1855 (1956)
Q Consensus 1837 LA~ay~klGdyEEAie~ye 1855 (1956)
+|.++..+|++++|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888877777666655444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=98.59 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN------LEALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn------aeAl~ 1677 (1956)
++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy8682 1678 AISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leK 1698 (1956)
.+|.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999998887777655543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.9e-08 Score=95.72 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1781 KAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1781 EAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
+|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..+++.+|.++..+|++++|+.+|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred cCCC
Q psy8682 1861 QAAT 1864 (1956)
Q Consensus 1861 dPdn 1864 (1956)
.|++
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 7753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-07 Score=86.76 Aligned_cols=84 Identities=29% Similarity=0.465 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+..++.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcC
Q psy8682 1684 TNEA 1687 (1956)
Q Consensus 1684 ~~lG 1687 (1956)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-07 Score=86.79 Aligned_cols=83 Identities=29% Similarity=0.553 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
..++..+|.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+.+|+++++++|++..++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HcC
Q psy8682 1843 HLG 1845 (1956)
Q Consensus 1843 klG 1845 (1956)
.+|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-07 Score=93.33 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1744 EAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+|+..|+++++.+|.+ +.+++.+|.+|...|++++|+.+|++++.++|++..++..+|.++..+|++++|+..|+++
T Consensus 3 ~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5789999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC--cHHHHHHHHHHHHH
Q psy8682 1824 LQLSPG--FVRARYNLGITCVH 1843 (1956)
Q Consensus 1824 LeL~Pd--naeA~~~LA~ay~k 1843 (1956)
+++.|. +..+...+...+..
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHH
Confidence 998774 33444444444433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.57 E-value=8e-08 Score=91.82 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR-LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~Pdnae-A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
+.+|.++...|++++|+..|+++++.+|+++. ++..+|.++..+|++++|+.+|+++++++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56788888889999999999999999998888 89999999999999999999999999999988877644 5
Q ss_pred CHHHHHHHHHHHHHhcCCChh
Q psy8682 1846 ANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~d 1866 (1956)
.+.+|+.+|++++..+|+++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHhccCccccc
Confidence 577888888888888887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-07 Score=116.19 Aligned_cols=139 Identities=8% Similarity=-0.035 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ-----EPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSI-----EPKNL 1673 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALel-----dPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeL-----dPdna 1673 (1956)
..+..+..+..+|+|++|+.+|++++++ .|++ +.++.++|.+|..+|+|++|+.++++++++ .|+++
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3445666777899999999999999976 3444 567899999999999999999999999986 34544
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy8682 1674 ---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1674 ---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Le 1750 (1956)
..+++||.+|..+|++++|+.+|++++++ +...+... .|........++.++..++.+++|...|.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i----------~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI----------LLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999998 65555443 57777788889999999999999999998
Q ss_pred HHHHhC
Q psy8682 1751 NAARQC 1756 (1956)
Q Consensus 1751 kALel~ 1756 (1956)
++.+..
T Consensus 460 ~~~~~~ 465 (490)
T 3n71_A 460 KMREAA 465 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-07 Score=114.83 Aligned_cols=137 Identities=10% Similarity=-0.033 Sum_probs=111.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1644 SLGISLAENEQDPQAIAALSKCLSI-----EPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1644 ~LA~ay~~lGdyeEALe~yeKALeL-----dPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
..+..+..+|+|++|+..|++++++ .|+++ .++.+||.+|..+|+|++|+.++++++++ +..
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------~~~ 383 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------YMK 383 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------HHH
Confidence 3444567899999999999999986 34444 57899999999999999999999999998 777
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-----CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel-----~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
.+... .+..+..+.+||.+|..+|++++|+.+|++|+++ .|+++....+..+++.++..++.|++|...|.++.
T Consensus 384 ~lG~~-Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 384 LYHHN-NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HSCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66444 6888889999999999999999999999999865 45552335566777888888888888888887775
Q ss_pred H
Q psy8682 1791 Q 1791 (1956)
Q Consensus 1791 e 1791 (1956)
+
T Consensus 463 ~ 463 (490)
T 3n71_A 463 E 463 (490)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=9.9e-07 Score=91.62 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEE 1815 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeE 1815 (1956)
+++++|+.+|+++.+..... +. +|.+|...+..++|+.+|+++.+. .++.++++||.+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~-----a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF-----GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-----HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh-----hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 47899999999999987544 34 999999999999999999999986 789999999999999 899999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
|+.+|+++.+. .++.+.++||.+|.. .+++++|+.+|++|.+. .++.+...++.
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 99999999986 779999999999999 99999999999999987 55666666653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-07 Score=89.77 Aligned_cols=71 Identities=15% Similarity=0.321 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1793 ~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+|+++.+++.+|.+|...|++++|+.+|+++++++|++..+++.+|.+|..+|++++|+..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 46666667777777777777777777777777777776667777777777777777777777777766654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.39 E-value=8.1e-07 Score=86.60 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
+|++ +.+++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.+|..+|++++|+..|++++++.|.
T Consensus 3 ~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPED---PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5676 8899999999999999999999999999999999999999999999999999999999999987654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.1e-07 Score=86.22 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAE-VWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdnae-Al~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
.+.+|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999988744
Q ss_pred CCHHHHHHHHHHHHhc
Q psy8682 1687 ACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1687 GdydEALe~leKALel 1702 (1956)
+.+.+|+..|++++..
T Consensus 75 ~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHHHHCCTTHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5567778888777766
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=83.69 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
+++++|+.+|+++.+.+ ++. +. +|.+|...+..++|+.+|+++.+. .+ +.++
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~---~~a~ 60 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMF------------------GC--LSLVSNSQINKQKLFQYLSKACEL--NS---GNGC 60 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTT------------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TC---HHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHh------------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CC---HHHH
Confidence 46889999999999881 222 22 889999999999999999999987 45 8899
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1767 NGLGVLFNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1767 ~~LG~ly~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
+++|.+|.. .+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+. .+..+..+|+
T Consensus 61 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 999999998 89999999999999986 789999999999999 99999999999999987 4455555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.9e-05 Score=92.60 Aligned_cols=107 Identities=15% Similarity=0.094 Sum_probs=89.0
Q ss_pred hCCCCCCCHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHC-----CChHHH
Q psy8682 1755 QCPSQSIDPDVQNGLGVLFNL---S--D------EYDKAVDCFRSALQVRPD--DSRLWNRLGASLANG-----NRPEEA 1816 (1956)
Q Consensus 1755 l~P~n~~~a~a~~~LG~ly~~---l--G------dyeEAie~fekALel~Pd--naeA~~nLG~ay~ql-----GryeEA 1816 (1956)
.+|++ +.+++..|.+... . | ...+|...++++++++|+ +..+|..+|.+|... |+.++|
T Consensus 147 ~~~~d---ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA 223 (301)
T 3u64_A 147 CTRVD---VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKA 223 (301)
T ss_dssp CCGGG---HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHH
T ss_pred cCccc---cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence 34555 6666655555422 1 3 257899999999999999 677999999999995 999999
Q ss_pred HHHHHHHHhhCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCC
Q psy8682 1817 VEAYHTALQLSPGF-VRARYNLGITCVH-LGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1817 ie~yeKALeL~Pdn-aeA~~~LA~ay~k-lGdyEEAie~yekALeLdPdn 1864 (1956)
.++|++|++++|+. ..+++..|..+.. .|++++|..+++++++..|..
T Consensus 224 ~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 224 HTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999975 9999999999988 599999999999999998874
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=97.02 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH----HHHHH----HHHH--HHHhCCCCHHHHHHHHHHHHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY----DKAVD----CFRS--ALQVRPDDSRLWNRLGASLAN 1809 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdy----eEAie----~fek--ALel~PdnaeA~~nLG~ay~q 1809 (1956)
..+.+|+.+|+++++++|++ +.++..++.+|.....+ ..... .++. ++...|.++.++..+|..+..
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~---a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~ 289 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEF---TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV 289 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence 34589999999999999999 88888888877532111 11111 2222 234568999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1810 lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
.|++++|+..+++|+.++|+ ..++..+|.++...|++++|++.|++|+.++|..+.
T Consensus 290 ~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999999975 678899999999999999999999999999998654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.98 E-value=7.4e-05 Score=90.53 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPDNAEVWLSLGISLA 1650 (1956)
Q Consensus 1604 daeall~LG~aylk~Gd---ydEAIe~fekALeldPdnaeAl~~LA~ay~ 1650 (1956)
++-.++.+|..++..++ +.+|+.+|++|++++|+++.++..++.+|.
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45567777888777654 578999999999999999888888888776
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00034 Score=82.16 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-CCCh
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-----DEYDKAVDCFRSALQVRPDD-SRLWNRLGASLAN-GNRP 1813 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-----GdyeEAie~fekALel~Pdn-aeA~~nLG~ay~q-lGry 1813 (1956)
....|...++++++++|+. ....+|..+|.+|... |+.++|.++|++|++++|+. ...++.+|..+.. .|++
T Consensus 178 ~l~~A~a~lerAleLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred hHHHHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4578999999999999994 2377999999999996 99999999999999999975 9999999999988 5999
Q ss_pred HHHHHHHHHHHhhCCC
Q psy8682 1814 EEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1814 eEAie~yeKALeL~Pd 1829 (1956)
++|..++++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999998776
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.6e-05 Score=95.25 Aligned_cols=121 Identities=7% Similarity=-0.046 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ-----EPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSI-----EPKNL 1673 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALel-----dPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeL-----dPdna 1673 (1956)
..+.....+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++++ .|+++
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3344455667889999999999999975 3445 557899999999999999999999999976 24444
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh
Q psy8682 1674 ---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738 (1956)
Q Consensus 1674 ---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~ 1738 (1956)
..+++||.+|..+|++++|+.+|++++++ +....... .|....++.+|+.+...
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i----------~~~~lG~~-Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI----------MRVTHGRE-HSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHTCTT-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------HHHhcCCC-ChHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999998 55555333 56666666677766643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.8e-05 Score=74.71 Aligned_cols=73 Identities=14% Similarity=0.042 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1793 RPDDSRLWNRLGASLANGNR---PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1793 ~PdnaeA~~nLG~ay~qlGr---yeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..+++.|+|++|+.+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57788888888888876555 68888888888888888888888888888888888888888888888888733
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.3e-05 Score=93.71 Aligned_cols=117 Identities=15% Similarity=-0.010 Sum_probs=93.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSIE-----PKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeLd-----Pdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
.-+..+|+|++|+..+++++++. |+++ .++.++|.+|..+|+|++|+.++++++.+ +...+.
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i----------~~~~lg 364 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP----------YRIFFP 364 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------HHHHSC
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----------HHHHcC
Confidence 34567899999999999999863 5554 56889999999999999999999999998 777665
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-----CPSQSIDPDVQNGLGVLFN 1774 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel-----~P~n~~~a~a~~~LG~ly~ 1774 (1956)
.. .+..+..++++|.+|..+|++++|+.+|++|+++ .|+++....++.+|+.+..
T Consensus 365 ~~-Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 365 GS-HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp SS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 44 7888899999999999999999999999999875 4555222344455555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4e-05 Score=95.00 Aligned_cols=87 Identities=9% Similarity=-0.062 Sum_probs=76.1
Q ss_pred HHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHH
Q psy8682 1616 LRQGDLPSAILYLEAAAKQ-----EPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSI-----EPKN---LEALMAI 1679 (1956)
Q Consensus 1616 lk~GdydEAIe~fekALel-----dPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeL-----dPdn---aeAl~~L 1679 (1956)
...|+|++|+.+|++++++ .|++ +.++.++|.+|..+|+|++|+.++++++++ .|++ +..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999985 4555 457889999999999999999999999986 3444 4568999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1680 SICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1680 A~aY~~lGdydEALe~leKALel 1702 (1956)
|.+|..+|++++|+.+|++|+++
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999998
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=4.8e-05 Score=81.64 Aligned_cols=93 Identities=10% Similarity=-0.001 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGN---RPEEAVEAYHTALQLS-P-GFVRARYNLGITCVHLGANTQAVEH 1853 (1956)
Q Consensus 1779 yeEAie~fekALel~PdnaeA~~nLG~ay~qlG---ryeEAie~yeKALeL~-P-dnaeA~~~LA~ay~klGdyEEAie~ 1853 (1956)
...+.+.|.+.+..++.+..+.+++|.++.+.+ +.++|+..++..++.+ | +..+++|+||..+.++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 445777788888888888888999999998888 5668999999988887 6 5678889999999999999999999
Q ss_pred HHHHHHhcCCChhchhcc
Q psy8682 1854 FLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1854 yekALeLdPdn~dA~~~L 1871 (1956)
++++|+++|+|..+...+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 999999999888765544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=6.9e-05 Score=92.91 Aligned_cols=94 Identities=12% Similarity=-0.021 Sum_probs=81.7
Q ss_pred HcCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchh
Q psy8682 1651 ENEQDPQAIAALSKCLSI-----EPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKL 1722 (1956)
Q Consensus 1651 ~lGdyeEALe~yeKALeL-----dPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl 1722 (1956)
..|+|++|+..|++++++ .|+++ .++.+||.+|..+|+|++|+.++++++.+ +...+... .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------~~~~lG~~-H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP----------YSKHYPVY-S 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHSCSS-C
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH----------HHHHcCCC-C
Confidence 468999999999999986 35554 56889999999999999999999999999 77766544 6
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
+..+..+.+||.+|..+|++++|+.+|++|+++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00017 Score=71.35 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQE-------PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEAL 1676 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeld-------PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl 1676 (1956)
++..++.+|..++..|+|..|+..|++|++.. +....++..+|.++.++|++++|+.++++++++.|++..++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 56789999999999999999999999999863 34578999999999999999999999999999999999998
Q ss_pred HHHH
Q psy8682 1677 MAIS 1680 (1956)
Q Consensus 1677 ~~LA 1680 (1956)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 8877
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0019 Score=81.40 Aligned_cols=165 Identities=7% Similarity=-0.061 Sum_probs=123.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhcCCCCCCCch
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSKCLSIE-PKNLEALMAISICFTNEA---------CLHDALDTLKDKIRPGQESNPRPS 1711 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeKALeLd-PdnaeAl~~LA~aY~~lG---------dydEALe~leKALelg~e~dPd~e 1711 (1956)
+..+-..+.+.|+.++|+++|+++.+.. .-+...|..+-.++...+ ..++|.+.|+++... ...|+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--G~~Pd-- 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--KVVPN-- 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--TCCCC--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--CCCCC--
Confidence 3444455666677777777777666543 223445555555554433 368899999988776 23455
Q ss_pred hhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1712 AYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1712 ay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
..++..+...|.+.|++++|..+|+++.+..-. .+..+|..+-..|.+.|+.++|.+.|++..+
T Consensus 105 --------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~--Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 105 --------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ--PRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp --------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 234566778999999999999999999875321 1278899999999999999999999999987
Q ss_pred hC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1792 VR-PDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1792 l~-PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
.. .-+...|..+-.+|.+.|+.++|.+++++..+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 64 336788999999999999999999999998774
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0013 Score=82.73 Aligned_cols=166 Identities=8% Similarity=-0.051 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc---------CCHHHH
Q psy8682 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR---------EIHQQV 1745 (1956)
Q Consensus 1675 Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l---------GdyeEA 1745 (1956)
.+..+-..+.+.|+.++|+++|+++.+. ...|+...| ..+-.++... +..++|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd~~ty----------------n~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN--GVQLSQYHY----------------NVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCCHHHH----------------HHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHhHH----------------HHHHHHHHhCCchhhhhhcchHHHH
Confidence 4566677889999999999999999876 235552223 3333444433 347899
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
.++|.++....-. .+..+|..+...|.+.|++++|...|++..+.. ..+..+|..+-..|.+.|+.++|.+.|++..
T Consensus 90 ~~lf~~M~~~G~~--Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 90 FDIFKQMIVDKVV--PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHTTCC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999998775422 127889999999999999999999999988764 3468899999999999999999999999998
Q ss_pred hhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1825 QLSP-GFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1825 eL~P-dnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
+..- -+...|..|..+|.+.|+.++|.++|++..+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 7532 25678999999999999999999999988654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00024 Score=70.24 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-------PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~-------PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
+.-.+.+|..++..|+|..|+..|++|++.. +....++..+|.++.++|++++|+.++++++++.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445555666666666666666666555542 123444555555555555555555555555555555555444
Q ss_pred HHH
Q psy8682 1836 NLG 1838 (1956)
Q Consensus 1836 ~LA 1838 (1956)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00026 Score=69.52 Aligned_cols=68 Identities=18% Similarity=0.023 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy8682 1604 NETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1604 daeall~LG~aylk~Gd---ydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd 1671 (1956)
+++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33444455554443333 345555555555555555555555555555555555555555555544444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0005 Score=73.84 Aligned_cols=94 Identities=12% Similarity=-0.028 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCChHH
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD---EYDKAVDCFRSALQVR-P-DDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG---dyeEAie~fekALel~-P-dnaeA~~nLG~ay~qlGryeE 1815 (1956)
....+.+.|.+.+..++.+ ..+.+++|.++.+.+ +.++++..++.+++.+ | +..+.+++||..++++|+|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~---~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3456777888888877776 999999999999988 6779999999999998 6 568999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHH
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNL 1837 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~L 1837 (1956)
|++++++++++.|++..+...+
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999988776543
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00078 Score=72.24 Aligned_cols=122 Identities=15% Similarity=0.225 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHH---cCCHHHHHHHHHHhhc---------ccCCCHHHHHHHHHHHHHc
Q psy8682 795 QHRKRKAFEDNIRKNRMV--ISNWIKYAQWEES---QKQVDRARSIYERALD---------VDHRNITLWLKYTELEMRN 860 (1956)
Q Consensus 795 ~~RAR~lyEraL~~~~~s--~~lWlkYAqfE~~---~Gd~ErARsIfERALs---------~~Pk~~dLWl~YadfE~k~ 860 (1956)
..++|+.||..|...... ..+|.+|++|-.. .|. ..-..++||+++ .+|+...||+.|+++ +
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~ 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY---N 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT---B
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh---c
Confidence 346888999999885222 5889999999765 354 347789999998 345568999999998 3
Q ss_pred CChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc----cCchHHHHHHHHhhc
Q psy8682 861 RQVNHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRDS----ISQVTLWLGALTLSL 923 (1956)
Q Consensus 861 gnierARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL----~~~~~LWl~Yi~fEl 923 (1956)
.+ .+.+|+..... --+.+.+|..|+.+.+..|+.+.|..||++++ .+...|-..|-.|..
T Consensus 82 ~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~ 147 (152)
T 4a1g_A 82 SD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQT 147 (152)
T ss_dssp SC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 33 79999998873 34458999999999999999999999999999 566677777755543
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0015 Score=72.97 Aligned_cols=128 Identities=13% Similarity=0.206 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhh--c-CCC-HHHHHHHHHHHHH---cCCH--H-HHH-HHHHHhhc---------ccCCCHHHHHHH
Q psy8682 794 YQHRKRKAFEDNIRK--N-RMV-ISNWIKYAQWEES---QKQV--D-RAR-SIYERALD---------VDHRNITLWLKY 853 (1956)
Q Consensus 794 ~~~RAR~lyEraL~~--~-~~s-~~lWlkYAqfE~~---~Gd~--E-rAR-sIfERALs---------~~Pk~~dLWl~Y 853 (1956)
.+...|+.||+.|.. . ... ..+|.+|++|-.. .|.. + .-. .++||+++ .+|+..+||+.|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 456788999999987 2 222 5899999999653 2443 2 233 79999998 355668999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc----cCchHHHHHHHHhh
Q psy8682 854 TELEMRNRQVNHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRDS----ISQVTLWLGALTLS 922 (1956)
Q Consensus 854 adfE~k~gnierARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL----~~~~~LWl~Yi~fE 922 (1956)
+++- ..++....+.+|...... --+.+.+|..|+.+.+..|+.+.|..||.+++ .+...|-..|-.|.
T Consensus 87 a~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~ 160 (202)
T 3esl_A 87 INLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYE 160 (202)
T ss_dssp HHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred HHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 9974 234467899999998874 34458999999999999999999999999999 56666777774443
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=75.05 Aligned_cols=125 Identities=14% Similarity=0.234 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHc---CC--HHHHHHHHHHhhc---------ccCCCHHHHHHH
Q psy8682 791 LRDYQHRKRKAFEDNIRKN---RMVISNWIKYAQWEESQ---KQ--VDRARSIYERALD---------VDHRNITLWLKY 853 (1956)
Q Consensus 791 a~~~~~RAR~lyEraL~~~---~~s~~lWlkYAqfE~~~---Gd--~ErARsIfERALs---------~~Pk~~dLWl~Y 853 (1956)
....+.+.|..||..|... ..-..+|.+|++|-... |. -..-..++||+++ .+|+...||+.|
T Consensus 47 ~~~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Y 126 (223)
T 4aez_C 47 EVAGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQY 126 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 3445667889999999873 23368999999996643 32 1235689999998 345568999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc----cCchHHHHHHHHh
Q psy8682 854 TELEMRNRQVNHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRDS----ISQVTLWLGALTL 921 (1956)
Q Consensus 854 adfE~k~gnierARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL----~~~~~LWl~Yi~f 921 (1956)
+++ + +..+.+|...... --+.+.+|..|+.+.+..|+.+.|..||.+++ .+...|-..|-.|
T Consensus 127 a~~---~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 194 (223)
T 4aez_C 127 VNY---I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQF 194 (223)
T ss_dssp HTT---C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHH
T ss_pred HHc---c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 997 2 4667899998874 34458999999999999999999999999999 5666666677333
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0016 Score=70.79 Aligned_cols=120 Identities=23% Similarity=0.328 Sum_probs=89.4
Q ss_pred HHHHHHHHhhc--CCCHHHHHHHHHHHHH---cCCHH-HHHHHHHHhhcc---------cCCCHHHHHHHHHHHHHcCCh
Q psy8682 799 RKAFEDNIRKN--RMVISNWIKYAQWEES---QKQVD-RARSIYERALDV---------DHRNITLWLKYTELEMRNRQV 863 (1956)
Q Consensus 799 R~lyEraL~~~--~~s~~lWlkYAqfE~~---~Gd~E-rARsIfERALs~---------~Pk~~dLWl~YadfE~k~gni 863 (1956)
|+.||..|... ..-..+|.+|++|-.. .|..+ .-..++||+++. +|+...||+.|+++ +++
T Consensus 3 r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~~- 78 (164)
T 2wvi_A 3 KRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRL---CNE- 78 (164)
T ss_dssp THHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH---CSC-
T ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh---cCC-
Confidence 35688777643 2226899999999654 23322 346799999983 45558999999998 333
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc----cCchHHHHHHHHhhcc
Q psy8682 864 NHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRDS----ISQVTLWLGALTLSLE 924 (1956)
Q Consensus 864 erARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL----~~~~~LWl~Yi~fEle 924 (1956)
.+.+|...... .-+.+.+|..|+.+.+..|+.+.|..||.+++ .+...|-..|-.|...
T Consensus 79 --p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 79 --PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQAR 143 (164)
T ss_dssp --HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 67889988773 34458999999999999999999999999999 6767788888666554
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.011 Score=66.08 Aligned_cols=139 Identities=10% Similarity=0.121 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHHHHhh---CCCC-HHHHHHHHhhccCCCCCCCCCChHHhhH-HHHHHH-HHHHHHHhhcC---------
Q psy8682 746 DEYDKAVDCFRSALQV---RPDF-TELLVYLFSSLDFQPPKQKISDPDELRD-YQHRKR-KAFEDNIRKNR--------- 810 (1956)
Q Consensus 746 geyEkArelFerALkk---fP~d-~~IWl~ylsfL~~~~~~~ki~d~Eea~~-~~~RAR-~lyEraL~~~~--------- 810 (1956)
.+....+..|++.+.. ..+| -.+|.+|+....... ..... ...... .++|||++.+.
T Consensus 6 ~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~y--------P~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~ 77 (202)
T 3esl_A 6 SQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSY--------IEVDSESGQEVLRSTMERCLIYIQDMETYRNDP 77 (202)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH--------HHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCH
T ss_pred HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhC--------CCCCCcchhchHHHHHHHHHHHhcccccccCCH
Confidence 4556778888888776 3455 589999998765111 11110 011122 68899987542
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHH
Q psy8682 811 MVISNWIKYAQWEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA-NQFWYKY 887 (1956)
Q Consensus 811 ~s~~lWlkYAqfE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks-~~LW~kY 887 (1956)
...++|++||++. ..++....+.||.-+.+ .-.+...+|..|+.+....|++++|..||+.++...-.. ..|-.+|
T Consensus 78 RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~ 156 (202)
T 3esl_A 78 RFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSL 156 (202)
T ss_dssp HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred HHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 2268999999985 23447789999998887 677889999999999999999999999999999965443 4677789
Q ss_pred HHHHHH
Q psy8682 888 TYMEEM 893 (1956)
Q Consensus 888 idfE~k 893 (1956)
-+|+.+
T Consensus 157 ~~F~~R 162 (202)
T 3esl_A 157 SNYEDR 162 (202)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 898876
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.004 Score=64.94 Aligned_cols=93 Identities=10% Similarity=0.006 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH---HHHHHHHHHhhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE---AVEAYHTALQLS-P-GFVRARYNLGITCVHLGANTQAVEH 1853 (1956)
Q Consensus 1779 yeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE---Aie~yeKALeL~-P-dnaeA~~~LA~ay~klGdyEEAie~ 1853 (1956)
...+...|.+.+..++....+.+++|.++.+..+... ++.+++..+... | ..-+.++.||..++++|+|++|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4456667777777777778888888888888777665 888888877765 4 4566888888889999999999999
Q ss_pred HHHHHHhcCCChhchhcc
Q psy8682 1854 FLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1854 yekALeLdPdn~dA~~~L 1871 (1956)
++.+|+.+|+|..+....
T Consensus 97 ~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHH
Confidence 999999999888765544
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.014 Score=66.22 Aligned_cols=133 Identities=10% Similarity=0.151 Sum_probs=96.9
Q ss_pred cHHHHHHHHHHHHhh--CCCC-HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCC---------CHH
Q psy8682 747 EYDKAVDCFRSALQV--RPDF-TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRM---------VIS 814 (1956)
Q Consensus 747 eyEkArelFerALkk--fP~d-~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~---------s~~ 814 (1956)
..++.+..|++.+.- ..+| -.+|.+|+.......|.-.. ... .-..++|+|++.+.. ..+
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~-~~s-------~L~~lLErc~~~F~~~~rYknD~RyLk 121 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGET-KTS-------GLVTLLERCTREFVRNPLYKDDVRYLR 121 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCC-TTT-------CHHHHHHHHHHHTTTCGGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCc-chh-------hHHHHHHHHHHHhcccccccCCHHHHH
Confidence 466788888888864 2334 68999999887744432110 000 123578888876522 268
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q psy8682 815 NWIKYAQWEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA-NQFWYKYTYME 891 (1956)
Q Consensus 815 lWlkYAqfE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks-~~LW~kYidfE 891 (1956)
+|++||++. +..+.||.-+.+ +-.+...+|..|+.+....|++++|..||+.++...-.- ..|-.+|-.|+
T Consensus 122 lWl~Ya~~~------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~ 195 (223)
T 4aez_C 122 IWMQYVNYI------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFT 195 (223)
T ss_dssp HHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHH
T ss_pred HHHHHHHcc------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 999999962 466788888777 577888999999999999999999999999999976444 46667888887
Q ss_pred HH
Q psy8682 892 EM 893 (1956)
Q Consensus 892 ~k 893 (1956)
.+
T Consensus 196 ~R 197 (223)
T 4aez_C 196 HR 197 (223)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.016 Score=62.17 Aligned_cols=129 Identities=11% Similarity=0.178 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhhC-CCC-HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcC---------CCHHHHH
Q psy8682 749 DKAVDCFRSALQVR-PDF-TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNR---------MVISNWI 817 (1956)
Q Consensus 749 EkArelFerALkkf-P~d-~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~---------~s~~lWl 817 (1956)
..++..|+..+... .+| -.+|.+|+.......|. +. . .-..++|+|++.+. ...++|+
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~---g~-~-------~l~~lLErc~~~f~~~~~YknD~RyLklWl 75 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPE---NK-E-------YLITLLEHLMKEFLDKKKYHNDPRFISYCL 75 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSS---CT-H-------HHHHHHHHHHHHHTTCGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCC---Cc-h-------hHHHHHHHHHHHhcccccccCCHHHHHHHH
Confidence 45677788877654 344 58999999988855442 21 1 13357788876541 2268999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q psy8682 818 KYAQWEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA-NQFWYKYTYMEEML 894 (1956)
Q Consensus 818 kYAqfE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks-~~LW~kYidfE~k~ 894 (1956)
+||++. . ..+.||.-+.+ +-.+...+|..|+.+....|++++|..||+.+++....- ..|-.+|-+|+.+.
T Consensus 76 ~ya~~~---~---dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~ 149 (152)
T 4a1g_A 76 KFAEYN---S---DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRL 149 (152)
T ss_dssp HHHTTB---S---CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHTC
T ss_pred HHHHhc---C---CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHh
Confidence 999873 2 37899998887 577889999999999999999999999999999975544 46667888888653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.041 Score=57.41 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=81.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCCh
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK---AVDCFRSALQVR-P-DDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeE---Aie~fekALel~-P-dnaeA~~nLG~ay~qlGry 1813 (1956)
......+...|.+.+..++.+ ..+.+.+|.++.+..+... ++..++..+... | ..-+.++.||..++++|+|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s---~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCCCc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334556677778787777766 8999999999999887766 999999988876 4 4567899999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGIT 1840 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~a 1840 (1956)
++|..+++..|+..|++..+......+
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999998876554433
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.051 Score=59.08 Aligned_cols=127 Identities=7% Similarity=0.150 Sum_probs=89.2
Q ss_pred HHHHHHHhhC-CCC-HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCC---------CHHHHHHHHH
Q psy8682 753 DCFRSALQVR-PDF-TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRM---------VISNWIKYAQ 821 (1956)
Q Consensus 753 elFerALkkf-P~d-~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~---------s~~lWlkYAq 821 (1956)
..|+..+... .+| -.+|.+|+.......|. +..+ . .-..++|+|++.+.. ..++|++||+
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~---~~~~-s-----~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~ 74 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQ---GGKE-S-----NMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGR 74 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC--------C-----CHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcC---CCcc-c-----hHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHH
Confidence 3466665422 233 58999999877643321 1111 0 123478888876522 2689999999
Q ss_pred HHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q psy8682 822 WEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA-NQFWYKYTYMEEML 894 (1956)
Q Consensus 822 fE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks-~~LW~kYidfE~k~ 894 (1956)
+. ++ .+.||.-+.+ +..+...+|..|+.+....|++++|..||..++...... ..|-.+|-.|+.+.
T Consensus 75 ~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 75 LC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp HC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred hc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 84 33 6678887777 577889999999999999999999999999999976443 46777888888764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.029 Score=61.01 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------C-
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---------AEVWLSLGISLAENEQDPQAIAALSKCLSIE------P- 1670 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn---------aeAl~~LA~ay~~lGdyeEALe~yeKALeLd------P- 1670 (1956)
+++.....++..|.|+.|+.....++....++ ..++..+|.+++..++|.+|...|+++|+.. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67788888889999999999888877653222 3478899999999999999999999987652 1
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1671 ------------------KNLEALMAISICFTNEACLHDALDTLKDK 1699 (1956)
Q Consensus 1671 ------------------dnaeAl~~LA~aY~~lGdydEALe~leKA 1699 (1956)
.+.++.+.+|.||..++++++|+..++..
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11267899999999999999999998764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.11 E-value=1.4 Score=56.95 Aligned_cols=77 Identities=9% Similarity=-0.110 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA 1687 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lG 1687 (1956)
....+..+...|..++|+...+ ++... .......|++++|.+..+ ..++...|..+|..+...+
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcC
Confidence 3556666777788888776553 22222 234567788888887753 2356778888999999999
Q ss_pred CHHHHHHHHHHHH
Q psy8682 1688 CLHDALDTLKDKI 1700 (1956)
Q Consensus 1688 dydEALe~leKAL 1700 (1956)
+++.|.++|.++-
T Consensus 696 ~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 696 NFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcc
Confidence 9999988888764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.052 Score=58.99 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1640 EVWLSLGISLAENEQDPQAIAALSKCLSIEPKN---------LEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1640 eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn---------aeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
.+++.-...++..|.|+.|+-....++.+..++ ..++..+|.+++..++|..|...|+++++.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 356667778889999999999999877664222 247889999999999999999999999887
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.11 Score=54.48 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPD-NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1604 daeall~LG~aylk~Gd---ydEAIe~fekALeldPd-naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
.+.+.|+.|.++.+..+ ..+++.+++..++.+|. .-+.++.+|..++++|+|.+|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 67899999999998874 45799999999999884 578999999999999999999999999999999999876554
Q ss_pred HH
Q psy8682 1680 SI 1681 (1956)
Q Consensus 1680 A~ 1681 (1956)
..
T Consensus 119 ~~ 120 (134)
T 3o48_A 119 SM 120 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.58 Score=60.50 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=58.3
Q ss_pred HHHHHcCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1613 QEKLRQGDLPSAIL-YLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1613 ~aylk~GdydEAIe-~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
......+++++|.. ++.. -+ +...+..++..+...|.+++|+...+ ++...+ ......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHH
Confidence 34456788888866 4411 11 01223666666777777777765542 222222 23456777887
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
|.+..+. + .....|..+|..+...++++.|+.+|.++
T Consensus 671 A~~~~~~---~---------------------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTD---E---------------------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTT---C---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh---h---------------------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7766432 1 11234666778888888888888877765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.27 Score=52.30 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPD-NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1604 daeall~LG~aylk~Gd---ydEAIe~fekALeldPd-naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
..++.|+.|.++.+..+ ..+++.+++..+...|. .-+.++.+|..++++|+|.+|..+.+.+|+..|++..+....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 67899999999999874 55799999999999884 567999999999999999999999999999999998876544
Q ss_pred H
Q psy8682 1680 S 1680 (1956)
Q Consensus 1680 A 1680 (1956)
.
T Consensus 118 ~ 118 (144)
T 1y8m_A 118 S 118 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.37 Score=51.22 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHCCCh---HHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1794 PDDSRLWNRLGASLANGNRP---EEAVEAYHTALQLSPG-FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1794 PdnaeA~~nLG~ay~qlGry---eEAie~yeKALeL~Pd-naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
.-...+.+++|.++.+..+. .+++..++..+...|. .-+.++.||..+.++|+|++|.++.+..|+.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44677888888888877654 4688888888887774 5567888888888888888888888888888888777654
Q ss_pred cc
Q psy8682 1870 PH 1871 (1956)
Q Consensus 1870 ~L 1871 (1956)
..
T Consensus 116 Lk 117 (144)
T 1y8m_A 116 LK 117 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.84 E-value=1.2 Score=54.81 Aligned_cols=173 Identities=10% Similarity=-0.012 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q psy8682 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS-REIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1675 Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~-lGdyeEAle~LekAL 1753 (1956)
+.+.||.+|...|++++-.+++...... +..+.. ...+.....+-..+.. .+..+.-++....++
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~k----ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~ 86 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPF----------LSSISK----AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCI 86 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTG----------GGGSCH----HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHHhch----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 5678888888888888888887765444 222220 1122223333333332 344555566666666
Q ss_pred HhCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1754 RQCPSQS---IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD------DSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1754 el~P~n~---~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd------naeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
+...... ....+-..+|.+|+..|+|.+|.+.+.+.++--.. ..+++.....+|..++++.++..+|.+|.
T Consensus 87 ~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 87 EWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5432220 01113347889999999999998888887763211 13556667788889999999999998887
Q ss_pred hhC----CC---cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Q psy8682 1825 QLS----PG---FVRARYNLGITCV-HLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1825 eL~----Pd---naeA~~~LA~ay~-klGdyEEAie~yekALeLd 1861 (1956)
... +. .+.....-|..+. ..++|..|..+|-+++.-.
T Consensus 167 ~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 167 TTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 542 11 2234556678888 7899999999988887544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.23 Score=52.23 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHCCCh---HHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1796 DSRLWNRLGASLANGNRP---EEAVEAYHTALQLSPG-FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1796 naeA~~nLG~ay~qlGry---eEAie~yeKALeL~Pd-naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
.+.+.+++|.++.+..+. .+++..++..+...|. .-+.++.||..+.++|+|++|.++.+.+|+.+|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 456777777777776544 3577777777777764 456778888888888888888888888888888877765544
Q ss_pred c
Q psy8682 1872 G 1872 (1956)
Q Consensus 1872 G 1872 (1956)
.
T Consensus 119 ~ 119 (134)
T 3o48_A 119 S 119 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=4.9 Score=52.07 Aligned_cols=127 Identities=9% Similarity=-0.066 Sum_probs=81.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
++.......+.+.|...+....+...-+ ......+..+|.-+...+...++...+.++.....++.. ...++....+.
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHC
Confidence 3444445558889998888876544333 001112222333333344356777777776655444333 33333344567
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
|+++.|...|++.-..........|.+|.++..+|+.++|..+|+++..
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999876553345677889999999999999999999998875
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.26 Score=64.96 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=86.3
Q ss_pred hcCC-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------CCCC---------
Q psy8682 1738 SREI-HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFN--LS-DEYDKAVDCFRSALQV--------RPDD--------- 1796 (1956)
Q Consensus 1738 ~lGd-yeEAle~LekALel~P~n~~~a~a~~~LG~ly~--~l-GdyeEAie~fekALel--------~Pdn--------- 1796 (1956)
..++ ++.|+.++++..+.+|.. .+++..+.+.. .. .+--+|+..+.++++. .+.+
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~----~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~ 335 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIH----DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNC 335 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCc
Confidence 3445 688999999999998875 33333333322 12 2344678888777642 2222
Q ss_pred -HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1797 -SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTA 1857 (1956)
Q Consensus 1797 -aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekA 1857 (1956)
...+..-+..+...|+++-|+++.++|+...|.....|+.|+.+|..+|+++.|+-.+..+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2345556777889999999999999999999999999999999999999999998766544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.61 Score=57.24 Aligned_cols=194 Identities=9% Similarity=0.028 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHH-----
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAE-----VWLSLGISLAE-NEQDPQAIAALSKCLSIEPKNLE----- 1674 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPdnae-----Al~~LA~ay~~-lGdyeEALe~yeKALeLdPdnae----- 1674 (1956)
.+.+.+|..|...|++++-..++......-+.-+. ....+-..+.. -+..+.-++....+++...+.-.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998876544333222 22233333332 24455556666666654322211
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1675 -ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1675 -Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
.-..+|.+|...|+|.+|...+.+..+.....+. .....+.+..-..+|...+++.++...|.++.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-------------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDD-------------KNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-------------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-------------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2237899999999999999999998876211111 13456677788899999999999999999997
Q ss_pred HhC----CCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C---HHHHHHHHHHHHHCCC
Q psy8682 1754 RQC----PSQSIDPDVQNGLGVLFN-LSDEYDKAVDCFRSALQVRPD--D---SRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1754 el~----P~n~~~a~a~~~LG~ly~-~lGdyeEAie~fekALel~Pd--n---aeA~~nLG~ay~qlGr 1812 (1956)
... +.....+.+...-|.++. ..++|.+|..+|-++++.... . ..+...++.+-...++
T Consensus 167 ~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 167 TTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 653 111123445566788888 899999999999999754322 1 2334445555555555
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.59 E-value=14 Score=40.42 Aligned_cols=221 Identities=14% Similarity=0.110 Sum_probs=126.9
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDT 1695 (1956)
Q Consensus 1616 lk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~ 1695 (1956)
++-.+|+.++-+-.- +.|..++.-..++.+++-.|.|..|+-++.. -+...+.+..+.||...++|..|+..
T Consensus 13 ~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677776544332 2344556677888899999999998876642 35566778888999999999999999
Q ss_pred HHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy8682 1696 LKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL 1775 (1956)
Q Consensus 1696 leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~ 1775 (1956)
++..+.-..+.+|+...-.+..... ..+....+..+|.++...|+-++|+.++.......|-. +.+-+.+ |..
T Consensus 85 le~il~~kvd~d~~~d~~~~~ffvd-~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf---~~vEnli---yeN 157 (242)
T 3kae_A 85 LESILEGKVERDPDVDARIQEMFVD-PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF---SPVENLL---LEN 157 (242)
T ss_dssp HHHHHTTCSBCCCCCCHHHHTTSCC-TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH---HHHHHHH---HTT
T ss_pred HHHHHhcccccCcccccccceeeec-cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc---chHHHHH---hhc
Confidence 9999965445567633222222111 12333445668999999999999999999998887764 2222111 111
Q ss_pred ----cCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHcCCHH
Q psy8682 1776 ----SDEYDKAVDCFRSALQVRPDDSR--LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA-RYNLGITCVHLGANT 1848 (1956)
Q Consensus 1776 ----lGdyeEAie~fekALel~Pdnae--A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA-~~~LA~ay~klGdyE 1848 (1956)
..+.+. .+..+..+.. -+......+..... ...++-...-|..... ....+..|..+|-.+
T Consensus 158 ~vp~~~d~~~-------i~~~~~~~i~~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d 225 (242)
T 3kae_A 158 KVPQKRDKEN-------VRQTGRRGIEEEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMND 225 (242)
T ss_dssp CCCCCC------------------CHHHHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHH-------HHhhhhccchhhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccch
Confidence 000000 0000011100 00011111111111 2333334445654432 235567788889999
Q ss_pred HHHHHHHHHHHhcCC
Q psy8682 1849 QAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1849 EAie~yekALeLdPd 1863 (1956)
+...+|...-+.+|.
T Consensus 226 ~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 226 KSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHhcCCC
Confidence 999999888888885
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.41 E-value=9.8 Score=41.65 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--C---------------
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--E--------------- 1669 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL--d--------------- 1669 (1956)
--+.++..++-.|.|..|+-.+.. -+...+.+..+.||...++|..|+..++..+.- +
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred HHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 567789999999999999887753 356788899999999999999999999999932 2
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1670 PKNLE-ALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1670 Pdnae-Al~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
|.+.+ .+..+|.++...|+.++|+.++......
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 33333 3567899999999999999999998877
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.48 E-value=1.2 Score=59.00 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
.+..-+..+...|+|+-|+++.++|+...|.....|..|+.+|..+|+|+.|+-.++-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45555777788999999999999999999999999999999999999999999776654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.44 E-value=11 Score=46.65 Aligned_cols=174 Identities=10% Similarity=-0.027 Sum_probs=114.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH---H-HcCChHHHHHHHHHHHHhC----C-----
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISL---A-ENEQDPQAIAALSKCLSIE----P----- 1670 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay---~-~lGdyeEALe~yeKALeLd----P----- 1670 (1956)
...++..+...+...|+++...+.+.-..+.......+...+.... . .....+. ......+..- .
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kifl 132 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFV 132 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHH
Confidence 5678888889999999999988887766555443333322222211 1 1222221 1112222211 0
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHH
Q psy8682 1671 --KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL 1748 (1956)
Q Consensus 1671 --dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~ 1748 (1956)
........|+.+|...|++.+|...+.....-. +. .. ........+.....+|...+++.+|...
T Consensus 133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et---------~~-~~---~~~~kve~~l~q~rl~l~~~d~~~a~~~ 199 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVET---------YG-SM---EMSEKIQFILEQMELSILKGDYSQATVL 199 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------CS-SS---CHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---------Hh-cc---cHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 023455789999999999999999999876441 11 11 0234566777888999999999999999
Q ss_pred HHHHHHh---CCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1749 YLNAARQ---CPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1749 LekALel---~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
++++... .+.. ......+...|.++...++|.+|-.+|.+++..
T Consensus 200 ~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 200 SRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9987431 2222 123456778899999999999999999998864
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.37 E-value=2.4 Score=51.65 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----------------------AEVWLSLGISLAENEQDPQAIAALSK 1664 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn----------------------aeAl~~LA~ay~~lGdyeEALe~yeK 1664 (1956)
.+...|......|+.+.|...+++|+.+.... ..+...++..+...|++.+|+..+.+
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555666789999999999999874321 12445667788899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1665 CLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1665 ALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
++..+|-+..++..+..+|...|+..+|+..|+++-+.
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=2.3 Score=51.74 Aligned_cols=112 Identities=7% Similarity=-0.040 Sum_probs=70.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA-VDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEA-ie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
.|......|+.+.|...+.+|+.+.... .-+... ...+-.+ ...+++.. ..+...++.++...
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~-~L~~~~---------~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~ 184 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGP-VLDDLR---------DFQFVEPFATALVEDK------VLAHTAKAEAEIAC 184 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTGGGT---------TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCC-CCCCCC---------chhHHHHHHHHHHHHH------HHHHHHHHHHHHHC
Confidence 3444456789999999999999987654 111100 0111111 11111111 12344566677777
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
|++.+|+..+.+++..+|-+-.++..+..+|...|+..+|+..|+++-+
T Consensus 185 g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 185 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888878887777777778888888888888777776644
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.65 E-value=15 Score=45.68 Aligned_cols=198 Identities=14% Similarity=-0.002 Sum_probs=124.9
Q ss_pred CChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH---H-HcCC
Q psy8682 1619 GDLPSAILYLEAAAKQ------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF---T-NEAC 1688 (1956)
Q Consensus 1619 GdydEAIe~fekALel------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY---~-~lGd 1688 (1956)
|++++|++.+...-+. .+....+...+..++...|+++...+.+.-..+.......+...+.... . ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888877554432 2334678888899999999999888877665554444333332222211 1 1121
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC--CCCHHH
Q psy8682 1689 LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC-PSQ--SIDPDV 1765 (1956)
Q Consensus 1689 ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~-P~n--~~~a~a 1765 (1956)
.+. ......+..-.....+ ..|.. ...+.....|+.++...|++.+|...+.....-. ... .....+
T Consensus 110 ~d~--~~~~~~i~~l~~vte~-kiflE-------~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~ 179 (445)
T 4b4t_P 110 LDL--NTRISVIETIRVVTEN-KIFVE-------VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQF 179 (445)
T ss_dssp THH--HHHHHHHHCCSSSSSC-CCCCC-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred hhH--HHHHHHHHHHHHHhcc-chHHH-------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 111 1112222220000000 00110 1245556789999999999999999999886431 111 123567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQ---VRPDDS----RLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALe---l~Pdna----eA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+....++|...+++.+|...++++.. ..+..+ ..+...|.++...++|.+|..+|..++..
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 78888999999999999999998743 223333 45667899999999999999999998763
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.51 E-value=1.8 Score=54.61 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
...+..+|++......+..|..+|.+|..+.|.+ ...++.||.+....|+.-+|+-+|-+++......+.+..++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~---G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~ 228 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN---GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB---SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC---CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 4566789999999999999999999999999998 8999999999999999999999999999888778899999988
Q ss_pred HHHH
Q psy8682 1806 SLAN 1809 (1956)
Q Consensus 1806 ay~q 1809 (1956)
.+..
T Consensus 229 ~f~~ 232 (497)
T 1ya0_A 229 ALSK 232 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.48 E-value=8 Score=45.18 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=88.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
..+.+.|++++|++.+...++.+|.+ +.....+..+++-.|+++.|.+.++.+.+++|.....-..+..+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~d---a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI------ 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKD---ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV------ 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH------
Confidence 45678899999999999999999999 999999999999999999999999999999998654322211110
Q ss_pred HHHHHHHHHHHh--hCC---CcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1814 EEAVEAYHTALQ--LSP---GFVR---ARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1814 eEAie~yeKALe--L~P---dnae---A~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
.|...=.+.+. ..| ..+. ....-+......|+.++|...-.+|++..|..+.
T Consensus 76 -~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 76 -KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp -HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred -HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111111221 111 1222 3334455667789999999999999999887554
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.28 E-value=3.6 Score=51.94 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
...+..||.+......++.|..+|.+|+.+.|++...++.||.+....|+.-+|+-+|-+++......+.+..+|...+.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999887778888888888876
Q ss_pred H
Q psy8682 1843 H 1843 (1956)
Q Consensus 1843 k 1843 (1956)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.75 E-value=81 Score=40.88 Aligned_cols=257 Identities=11% Similarity=-0.055 Sum_probs=145.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH---HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy8682 1627 YLEAAAKQEPDNAEVWLSLGIS---LAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPG 1703 (1956)
Q Consensus 1627 ~fekALeldPdnaeAl~~LA~a---y~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg 1703 (1956)
-+...++.+|+.+..-...... +.+.+++..-+..|.. .|.+....+..+.+....|+..+|.....++-..+
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 4445567788887654444433 3345677666654443 37888888888888999999888888777776652
Q ss_pred CCCCCC-ch-hhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH-------------HHHhCCCCC--------
Q psy8682 1704 QESNPR-PS-AYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN-------------AARQCPSQS-------- 1760 (1956)
Q Consensus 1704 ~e~dPd-~e-ay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek-------------ALel~P~n~-------- 1760 (1956)
...|+ .. .+....... ......+.......+..|+...|..+... ++..+|...
T Consensus 133 -~~~p~~c~~l~~~~~~~g--~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~ 209 (618)
T 1qsa_A 133 -KSQPNACDKLFSVWRASG--KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTG 209 (618)
T ss_dssp -SCCCTHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSC
T ss_pred -CCCcHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccC
Confidence 22344 11 111111000 01122233344555555655555444332 122334320
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1761 --IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL----WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1761 --~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA----~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
........++.......+.+.|...+........-+... +..+|.-+...+...++...+.++.....++....
T Consensus 210 ~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 289 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE 289 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHH
Confidence 000112223444445568889999988876544333322 22333334445546788888888766554443333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1835 YNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1835 ~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
.++....+.|+++.|..+|...-.-....+...+-+|.++...|+..++- ..++.+
T Consensus 290 -~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~-~~~~~~ 345 (618)
T 1qsa_A 290 -RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK-EILHQL 345 (618)
T ss_dssp -HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 33344556799999999998765544455677888898888888876654 344433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.71 E-value=26 Score=48.41 Aligned_cols=148 Identities=5% Similarity=-0.092 Sum_probs=92.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---------------------
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--------------------- 1668 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL--------------------- 1668 (1956)
.+...+...+.++-|.. .+...|.++...+.+|.++...|++++|..+|+++..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445666677765544 33455677777788888888888888888888776221
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1669 --EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1669 --dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
....+..|..+..++...+.++.+++..+.|++.. .++. .......+.++-..+...|+|++|.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~---~~~~-----------~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK---ETDD-----------EDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC---CSCC-----------HHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---cCCC-----------hhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 01122446677778888899999999999888761 1110 0011224566777888889999987
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY 1779 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdy 1779 (1956)
..+...-... .....+..+...++..|..
T Consensus 959 ~aL~~~pd~~----~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 959 VALMVLSTTP----LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHSS----SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHhCCCHH----HHHHHHHHHHHHHHhCCCh
Confidence 7775443211 2245555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.55 E-value=14 Score=40.52 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=17.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeK 1664 (1956)
.|+++.|.+..+.+ ++...|..+|......|+++-|..+|.+
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444443332 2333444444444444444444444433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.39 E-value=7.2 Score=53.08 Aligned_cols=100 Identities=9% Similarity=-0.016 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-----CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDDS 1797 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel-----~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-Pdna 1797 (1956)
.....+..+...|.+.|+.++|..+|.+..+. .|+ ..+|+.+...|++.|+.++|.+.|++..... .-+.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 45567788899999999999999999886532 343 7889999999999999999999999988754 3467
Q ss_pred HHHHHHHHHHHHCCCh-HHHHHHHHHHHhhC
Q psy8682 1798 RLWNRLGASLANGNRP-EEAVEAYHTALQLS 1827 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGry-eEAie~yeKALeL~ 1827 (1956)
.+|+.+-.++.+.|+. ++|.++|+++.+..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8888888899998885 68889999998753
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.55 E-value=19 Score=49.25 Aligned_cols=108 Identities=12% Similarity=0.020 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQ----EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE-PKNLEALMAIS 1680 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALel----dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd-PdnaeAl~~LA 1680 (1956)
..+..+-..|.+.|+.++|..+|.+..+. -.-+...|..+-..|.+.|+.++|.++|++..+.. .-+...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 46778889999999999999999776432 23478899999999999999999999999998764 34666888898
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1681 ICFTNEAC-LHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1681 ~aY~~lGd-ydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
.++.+.|+ .++|.++++++.+. +..|+...|..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k--G~~PD~vtY~~ 241 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE--GLKLQALFTAV 241 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH--TCCSHHHHHHS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc--CCCCChhhccc
Confidence 99999998 57899999999987 34566333333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.13 E-value=15 Score=40.34 Aligned_cols=103 Identities=6% Similarity=-0.108 Sum_probs=66.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
.+....|+++.|.+..+.. ++ ...|..+|......|+++-|+.+|.++-. +..+..+|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----ND---SITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCH
Confidence 4556889999998887654 44 67899999999999999999999988522 22344445555655
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTA 1857 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekA 1857 (1956)
+.-.+.-+.+..... +.....++..+|+++++++.|.+.
T Consensus 77 e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 544444443333221 122234456677777777777543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.21 E-value=7.1 Score=45.59 Aligned_cols=129 Identities=18% Similarity=0.102 Sum_probs=79.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDA 1692 (1956)
Q Consensus 1613 ~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEA 1692 (1956)
..+++.|+.++|+......++.+|.++.....+..+++-.|++++|.+.++.+.+++|+....-..+..+ -.|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHH
Confidence 3566788888899888888888898888888888888888999999888888888888765432111111 111
Q ss_pred HHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1693 LDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1693 Le~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
...=.+.+.- ...|. +.. .+..-.....-+......|+.++|..+-.++++..|..
T Consensus 78 E~~R~~vfaG--~~~P~------~~g---~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 AQARKDFAQG--AATAK------VLG---ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHTTS--CCCEE------CCC---SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcC--CCCCC------CCC---CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111222221 11222 110 01111122233455556788888888888887776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1956 | ||||
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-23 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-23 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-22 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-17 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-15 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-16 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-13 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 9e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 9e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.001 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 5e-13 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 4e-09 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 7e-09 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 5e-08 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 5e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 6e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.004 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-09 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-09 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-05 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-06 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 7e-07 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 0.003 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 7e-04 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-06 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 0.004 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 8e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 8e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.001 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (253), Expect = 1e-23
Identities = 130/298 (43%), Positives = 179/298 (60%), Gaps = 12/298 (4%)
Query: 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652
Y F E+NP+++ F G +L++GDLP+A+L EAA +Q+P + E W LG + AEN
Sbjct: 7 GYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 66
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA 1712
EQ+ AI+AL +CL ++P N ALMA+++ FTNE+ A + L+D + P +
Sbjct: 67 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL----RYTPAYAH 122
Query: 1713 YKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVL 1772
A + L S + +V L+L A R P+ LGVL
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG-LGVL 181
Query: 1773 FNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832
FNLS EYDKAVDCF +AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R
Sbjct: 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241
Query: 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+RYNLGI+C++LGA+ +AVEHFL ALN Q + G MS++IW +LR
Sbjct: 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG-------AMSENIWSTLR 292
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 1e-04
Identities = 14/129 (10%), Positives = 24/129 (18%)
Query: 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862
G AV + A+Q P + A LG T A+ L +
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84
Query: 1863 ATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEWDQEKSRAHDCSD 1922
L + + + +
Sbjct: 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144
Query: 1923 DDDDPSGYQ 1931
S +
Sbjct: 145 SLLSDSLFL 153
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (254), Expect = 2e-23
Identities = 51/318 (16%), Positives = 90/318 (28%), Gaps = 12/318 (3%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
L + + GD +A + +QEPDN V L L + + ++ + +
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 1669 EPKNLEALMAISICF------------TNEACLHDALDTLKDKIRPGQESNPRPSAYKAD 1716
P EA + + A
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 1717 ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776
A S L + + + ++ + +Q + LG +FN
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
E A+ F A+ + P+ + LG L + AV AY AL LSP N
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 1837 LGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPF 1896
L G A++ + A+ Q D + ++++
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 1897 GDKLPHINLTQPEWDQEK 1914
NL + +Q
Sbjct: 303 THADSLNNLANIKREQGN 320
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.6 bits (244), Expect = 4e-22
Identities = 61/293 (20%), Positives = 108/293 (36%), Gaps = 22/293 (7%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALG 1612
+ + + + R + Y A + LG
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
QG++ AI + E A +P+ + +++LG L E +A+AA + LS+ P +
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732
++ + + + A+DT + I E P P LAN
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAI----ELQPH--------FPDAYCNLANA---- 280
Query: 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792
L + + Y A R CP+ D N L + ++AV +R AL+V
Sbjct: 281 ---LKEKGSVAEAEDCYNTALRLCPTH---ADSLNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
P+ + + L + L + +EA+ Y A+++SP F A N+G T +
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.1 bits (209), Expect = 1e-17
Identities = 46/225 (20%), Positives = 74/225 (32%), Gaps = 22/225 (9%)
Query: 1634 QEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDAL 1693
+P+ A W +LG + AI K ++++P L+A + + A+
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753
R S + LA + + + Y A
Sbjct: 224 AAYL---RALSLSPNHAVVH---------GNLACV-------YYEQGLIDLAIDTYRRAI 264
Query: 1754 RQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813
P PD L +A DC+ +AL++ P + N L
Sbjct: 265 ELQPH---FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
EEAV Y AL++ P F A NL G +A+ H+ A+
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.2 bits (191), Expect = 2e-15
Identities = 46/291 (15%), Positives = 92/291 (31%), Gaps = 12/291 (4%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
L + L + + A KQ P AE + +LG E Q +AI L +
Sbjct: 37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQ---ESNPRPSAYKADALPSKLTRL 1725
+P ++ + ++ + A+ ++ + +
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156
Query: 1726 ANHTLTFRSPLSSREIHQQVLSLY----LNAARQCPSQSI-----DPDVQNGLGVLFNLS 1776
P + + A +++ D LG + +
Sbjct: 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+D+AV + AL + P+ + + L + A++ Y A++L P F A N
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 1837 LGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWY 1887
L G+ +A + + TAL D L R + +++
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 5e-08
Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 14/205 (6%)
Query: 682 HKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID-PDVQNGLGV 740
A K L + L L + ++ + A + S S + V L
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Query: 741 LFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRK 800
++ D A+D +R A++++P F + L ++L ++ E D +
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL------KEKGSVAEAEDCYNT--- 296
Query: 801 AFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRN 860
+R + A + Q ++ A +Y +AL+V + +
Sbjct: 297 ----ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352
Query: 861 RQVNHARNLWDRAVTILPRANQFWY 885
++ A + A+ I P +
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYS 377
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 3e-04
Identities = 23/207 (11%), Positives = 60/207 (28%), Gaps = 24/207 (11%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
+ + RQ P + V L + D++ A++ P E
Sbjct: 15 FEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 771 YLFSSL---------------------DFQPPKQKISDPDELRDYQHRKRKAFEDNIRKN 809
L + DF ++ +A+ ++ N
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Query: 810 RMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNL 869
+ ++ +++ A++ Y +A++ W + ++ A +
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 870 WDRAVTILPRANQFWYKYTYMEEMLEN 896
+++AVT+ P + + +
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARI 218
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 7e-04
Identities = 12/136 (8%), Positives = 27/136 (19%)
Query: 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862
L E A + P L ++ A+ Q
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 1863 ATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEWDQEKSRAHDCSD 1922
+ + G + ++ ++I + +INL +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 1923 DDDDPSGYQPCTKLHN 1938
+
Sbjct: 125 VSALQYNPDLYCVRSD 140
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.1 bits (202), Expect = 2e-16
Identities = 33/230 (14%), Positives = 66/230 (28%), Gaps = 18/230 (7%)
Query: 1624 AILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683
+ YL A + D + L + K L + + +
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLY---QKMLVTDLEYALDKKVEQDLW 61
Query: 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL-----TFRSPLSS 1738
+ + + TL+ + + N + L F L
Sbjct: 62 NH--AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC 119
Query: 1739 REIHQQVLSLYLN-----AARQCPSQSIDPDVQ---NGLGVLFNLSDEYDKAVDCFRSAL 1790
R Q+ + A + S S Q LG + ++ +A +R A
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAA 179
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGIT 1840
Q+ P + + +N+L ++ + Y ++ + F A NL
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (179), Expect = 1e-13
Identities = 25/212 (11%), Positives = 61/212 (28%), Gaps = 12/212 (5%)
Query: 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDA------LDTLKDKIRPGQESNPRP 1710
Q+ L + ++ ++ + + +T+ L D D + ++
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNH 63
Query: 1711 SAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-SIDPD---VQ 1766
+ + + + + Y ++ + ++D
Sbjct: 64 AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKS 123
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826
+ LG++ N V S+ LG N+ +A Y A QL
Sbjct: 124 SQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
Query: 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
P + L I G + + ++ ++
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (122), Expect = 9e-07
Identities = 29/217 (13%), Positives = 62/217 (28%), Gaps = 27/217 (12%)
Query: 1624 AILYLEAAAKQE--PDNAEVWLSLGISLAENEQD-PQAIAALSKCLSIEPKNLEALMAIS 1680
I L+ AK P+ +EV +L + L Q + L +++ +
Sbjct: 68 QITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLG 127
Query: 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE 1740
I + + + D R
Sbjct: 128 IISNKQTHTSAIVKPQSSSCSY---ICQHCLVHLGDIA------------------RYRN 166
Query: 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLW 1800
Q S Y +AA+ PS + N L +L + ++ + + ++ V+
Sbjct: 167 QTSQAESYYRHAAQLVPS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223
Query: 1801 NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
L +L+ + V+ F++ ++
Sbjct: 224 TNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHV 260
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (97), Expect = 9e-04
Identities = 12/137 (8%), Positives = 31/137 (22%), Gaps = 8/137 (5%)
Query: 1781 KAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGIT 1840
++ R A ++ D + + + + Y L + +
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQD- 59
Query: 1841 CVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEP---RAVKEMSDSIWYSLRGFHPPFG 1897
+ A + +A + L A + + F+
Sbjct: 60 -LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP 118
Query: 1898 DKLPHINLTQPEWDQEK 1914
++ L Q
Sbjct: 119 CRVKSSQLGIISNKQTH 135
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 0.001
Identities = 13/83 (15%), Positives = 26/83 (31%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG + A Y AA+ P N + + L I + I + ++++
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217
Query: 1671 KNLEALMAISICFTNEACLHDAL 1693
A + + D +
Sbjct: 218 PFPAASTNLQKALSKALESRDEV 240
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.0 bits (170), Expect = 5e-13
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 23/117 (19%)
Query: 813 ISNWIKYAQWEESQKQV--------DRARSIYERALDVDHRNITLWLKYTE--------- 855
+ W KY QWE+S R YE+ L V + +W + +
Sbjct: 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLL 67
Query: 856 -----LEMRNRQVNHARNLWDRAVTIL-PRANQFWYKYTYMEEMLENVAGKLFVFHR 906
+ + A N+++RA++ L + ++ Y EE +++R
Sbjct: 68 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 124
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.1 bits (139), Expect = 4e-09
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 19/142 (13%)
Query: 784 KISDPDELRD---YQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQ-------------- 826
+ S+P D R A+E + W + AQ+ E
Sbjct: 18 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 77
Query: 827 KQVDRARSIYERALDV-DHRNITLWLKYTELEMRNRQVNHARNLWDRAVTIL-PRANQFW 884
D A +IYERA+ +N+ L+ Y + E + ++++R + I +
Sbjct: 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY 137
Query: 885 YKYTYMEEMLENVAGKLFVFHR 906
+Y E + +F +
Sbjct: 138 IQYMKFARRAEGIKSGRMIFKK 159
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.3 bits (137), Expect = 7e-09
Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 9/156 (5%)
Query: 747 EYDKAVDCFRSALQVRPDFTEL----LVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAF 802
+ + + L V ++ YL S K +++ D +
Sbjct: 31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD---EAANIY 87
Query: 803 EDNIRK-NRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITL-WLKYTELEMRN 860
E I + + + YA +EES+ + ++ SIY R L ++ + TL +++Y + R
Sbjct: 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147
Query: 861 RQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLEN 896
+ R ++ +A + + ME
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 183
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.6 bits (130), Expect = 5e-08
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 10/106 (9%)
Query: 796 HRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD----HRNITLWL 851
K FE ++K + + Y + + + R ++ER L ++ +W
Sbjct: 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245
Query: 852 KYTELEMRNRQVNHARNLWDRAVTILPR------ANQFWYKYTYME 891
++ E + + R T +Y +M+
Sbjct: 246 RFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMD 291
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 59.8 bits (143), Expect = 7e-10
Identities = 30/250 (12%), Positives = 63/250 (25%), Gaps = 15/250 (6%)
Query: 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAAL 1662
++E A L ++ L L + A + + A++ G+ A
Sbjct: 1 KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF 60
Query: 1663 SKCLSIEPKNLEAL----MAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718
S+ L+I P E + ++ +A L+ R A
Sbjct: 61 SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120
Query: 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ----------CPSQSIDPDVQNG 1768
R + + L+ + + ++
Sbjct: 121 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 180
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
+ ++ + S LG + + A + A+ +
Sbjct: 181 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240
Query: 1829 G-FVRARYNL 1837
FV RY L
Sbjct: 241 HNFVEHRYAL 250
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 47.9 bits (112), Expect = 5e-06
Identities = 34/229 (14%), Positives = 59/229 (25%), Gaps = 17/229 (7%)
Query: 1598 EDNPMQNETNA---FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654
+ ++ A + G G A A PD EV+ LGI L +
Sbjct: 27 ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 86
Query: 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP------------ 1702
A A L ++P A + I A D L +
Sbjct: 87 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 146
Query: 1703 --GQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS 1760
Q+ + + + K + L + + L +A
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206
Query: 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN 1809
+ LG + + D A F+ A+ + L+
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 255
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 4/193 (2%)
Query: 1735 PLSSREIHQQVLSLYLNA-ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793
PL + +L+ A + + + GVL++ A + F AL +R
Sbjct: 8 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 67
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
PD ++N LG L + A EA+ + L+L P + A N GI + G + A +
Sbjct: 68 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 127
Query: 1854 FLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPP---FGDKLPHINLTQPEW 1910
L L + + E +G + L
Sbjct: 128 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 187
Query: 1911 DQEKSRAHDCSDD 1923
R + D
Sbjct: 188 QTLMERLKADATD 200
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 0.004
Identities = 23/191 (12%), Positives = 48/191 (25%), Gaps = 14/191 (7%)
Query: 704 PLSSREIHQQVLSLYLNA-ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
PL + +L+ A + + + GVL++ A + F AL +R
Sbjct: 8 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 67
Query: 763 PDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQW 822
PD E+ Y + + D + + + +
Sbjct: 68 PDMPEVFNY------LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 121
Query: 823 EESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQ 882
+ +Q D + L E + + L
Sbjct: 122 KLAQDD-------LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 174
Query: 883 FWYKYTYMEEM 893
+ Y+ +
Sbjct: 175 WNIVEFYLGNI 185
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 58.9 bits (142), Expect = 1e-09
Identities = 18/107 (16%), Positives = 32/107 (29%)
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
+ L +G L A+ L A K P +A + S L + +A L + + + P+
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718
L + D G+ S +
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS 109
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 57.7 bits (139), Expect = 3e-09
Identities = 15/88 (17%), Positives = 29/88 (32%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
+ +A++ A++ P D+ L + L E A E +++L P ++ L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 1838 GITCVHLGANTQAVEHFLTALNQQAATH 1865
A + TA
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEE 98
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 46.6 bits (110), Expect = 1e-05
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 1807 LANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
L+ G + ++A+E A++ SP R + G +A E + ++
Sbjct: 7 LSEG-QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65
Query: 1867 GLTPHGLEPRAVKEMSD 1883
G + +A + D
Sbjct: 66 GASQLRHLVKAAQARKD 82
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.5 bits (127), Expect = 1e-07
Identities = 19/223 (8%), Positives = 44/223 (19%), Gaps = 26/223 (11%)
Query: 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
E + + + + ++ + N W L + P
Sbjct: 136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195
Query: 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKAD 1716
+ ++ K LE + A D D P
Sbjct: 196 DSGPQGRLPENVLLKELELV--------QNAFFTDPNDQSAWFYHRWLLGRAEPL----- 242
Query: 1717 ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776
+ + + + + L +
Sbjct: 243 --------FRCELSVEK--STVLQSELESCKELQELEPENKW---CLLTIILLMRALDPL 289
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819
+ + F + V P + + L + N + A
Sbjct: 290 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.4 bits (119), Expect = 1e-06
Identities = 33/274 (12%), Positives = 67/274 (24%), Gaps = 22/274 (8%)
Query: 1607 NAFALGQEKLRQGDLPS-AILYLEAAAKQEPDNAEVWLSLGISLAENEQDP--------- 1656
+A +K + G+L + PD A +W L E +
Sbjct: 30 SATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALV 89
Query: 1657 -QAIAALSKCLSIEPKNLEA--LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAY 1713
+ L CL + PK+ + E L+ + + +
Sbjct: 90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 149
Query: 1714 KADALPSK---------LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764
+ A + L + S R L ++ Q
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209
Query: 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824
+ L +D D++ + L R + E+ +
Sbjct: 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269
Query: 1825 QLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ + L L + +++F T
Sbjct: 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 303
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 51.1 bits (120), Expect = 7e-07
Identities = 26/282 (9%), Positives = 64/282 (22%), Gaps = 14/282 (4%)
Query: 1598 EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-----AEVWLSLGISLAEN 1652
++ M E NA Q + G+ A + A ++ P LG L
Sbjct: 6 REDTMHAEFNAL-RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 64
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK--DKIRPGQESNPRP 1710
+ +++A + + + ++ A+ L + +
Sbjct: 65 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 124
Query: 1711 SAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC--PSQSIDPDVQNG 1768
+ + A + + + + + + Q ++
Sbjct: 125 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 184
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
G L N + ++ + + S A +
Sbjct: 185 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 244
Query: 1829 GFVRAR----YNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
N+ + LG A +
Sbjct: 245 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 286
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (90), Expect = 0.003
Identities = 26/245 (10%), Positives = 56/245 (22%), Gaps = 14/245 (5%)
Query: 1626 LYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685
L E +Q P + + L + +A A+ + + +
Sbjct: 120 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179
Query: 1686 EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQV 1745
+ L E+ Y +D + + + ++ +
Sbjct: 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 239
Query: 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRL 1799
+ + L E++ A + D +R
Sbjct: 240 AKPE------FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSP--GFVRARYNLGITCVHLGANTQAVEHFLTA 1857
L R +A AL+L+ GF+ G +
Sbjct: 294 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 353
Query: 1858 LNQQA 1862
+A
Sbjct: 354 EQHRA 358
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.8 bits (115), Expect = 2e-06
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
+Y +A C+ A+ P + + +PE+A+ AL+L V+A + L
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 1838 GITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
G + + + +A+ + A + L D I +LR
Sbjct: 79 GQCQLEMESYDEAIANLQRAYS-------------LAKEQRLNFGDDIPSALR 118
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 3/128 (2%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
+ + + Y A + P + + + ++A+ R AL++ +
Sbjct: 20 YPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
LG +EA+ A L+ + + + + + ++Q+
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQE 136
Query: 1862 AATHDGLT 1869
+ H LT
Sbjct: 137 SELHSYLT 144
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.7 bits (94), Expect = 7e-04
Identities = 15/87 (17%), Positives = 33/87 (37%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G P A A + P A + + + + +Q QA+A + L ++
Sbjct: 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69
Query: 1671 KNLEALMAISICFTNEACLHDALDTLK 1697
++++A + C +A+ L+
Sbjct: 70 QSVKAHFFLGQCQLEMESYDEAIANLQ 96
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (115), Expect = 3e-06
Identities = 9/68 (13%), Positives = 23/68 (33%)
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
+ +++ A L R E A + A++L+ + + L +
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 1849 QAVEHFLT 1856
+++T
Sbjct: 95 HEEMNYIT 102
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 3e-05
Identities = 22/241 (9%), Positives = 55/241 (22%), Gaps = 38/241 (15%)
Query: 1630 AAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN-EAC 1688
+V+ L +E+ +A + + N + + +
Sbjct: 34 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93
Query: 1689 LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL 1748
LH+ ++ + I R + + L
Sbjct: 94 LHEEMNYITAII--------------------------EEQPKNYQVWHHRRVLVEWLRD 127
Query: 1749 YLNAARQCPSQSI----DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804
+ + +D + L+ ++ +WN+
Sbjct: 128 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY 187
Query: 1805 ASLANGNRPE------EAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
++N V+ ++L P A L G ++ L
Sbjct: 188 FVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLL 246
Query: 1859 N 1859
+
Sbjct: 247 D 247
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 0.004
Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 12/164 (7%)
Query: 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELR 792
DV + + + ++A R A+++ + + L L+
Sbjct: 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLL------------KSLQ 91
Query: 793 DYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLK 852
H + I + W E + + L+ D +N W
Sbjct: 92 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 151
Query: 853 YTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLEN 896
+ + ++ D+ + R N W + ++
Sbjct: 152 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 195
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 2e-05
Identities = 25/218 (11%), Positives = 61/218 (27%), Gaps = 55/218 (25%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G + D A+ A + ++ + ++G + +A A ++ ++ +
Sbjct: 11 EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730
A + + A+ LK+ + Q + YK L KL
Sbjct: 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALI--QLRGNQLIDYKILGLQFKLF------- 118
Query: 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790
+V + ++ +E+ KA + A
Sbjct: 119 -------------------------------ACEVLYNIAFMYAKKEEWKKAEEQLALAT 147
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
++ + ++ ++A+E P
Sbjct: 148 SMKSEPRH------------SKIDKAMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 8e-04
Identities = 17/128 (13%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 1750 LNAARQCPSQSIDPDVQ--NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807
A S DP + +G ++ + +A F ++ + + + G
Sbjct: 21 WKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 80
Query: 1808 ANGNRPEEAVEAYHTALQLSPG----------------FVRARYNLGITCVHLGANTQAV 1851
+ + A++ AL G YN+ +A
Sbjct: 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 140
Query: 1852 EHFLTALN 1859
E A +
Sbjct: 141 EQLALATS 148
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 4e-05
Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG ++D A+ + A ++ P + A + E A+++
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 1829 GFV-------RARYNLGITCVHLGANTQAVEHFLTAL 1858
+A +G + A+ + +L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 7e-04
Identities = 14/112 (12%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Query: 738 LGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHR 797
LG ++D A+ + A ++ P + + D ++ R+ +
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTY------ITNQAAVYFEKGDYNKCRELCEK 63
Query: 798 KRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITL 849
+ +N R + + + +++ A Y ++L L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (90), Expect = 8e-04
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 1624 AILYLEAAAKQ--EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI 1681
I+ LE + + + + L + ++ +A+ + L EP+N +A +
Sbjct: 55 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 39.6 bits (91), Expect = 0.001
Identities = 23/117 (19%), Positives = 43/117 (36%)
Query: 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN 1809
L+ S+S L + + EY KAV+C AL + + + R G +
Sbjct: 51 LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 110
Query: 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
N E A + L+++P AR + + + + + ++ A D
Sbjct: 111 MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQD 167
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1956 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.87 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.82 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.8 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.77 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.76 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.73 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.72 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.72 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.68 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.67 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.36 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.35 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.34 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.33 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.17 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.14 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.12 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.1 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.1 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.09 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.09 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.08 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.07 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.05 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.04 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.96 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.95 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.94 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.72 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.57 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.51 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.32 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.24 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.06 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.36 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.04 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.02 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.97 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.81 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 89.58 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.6e-28 Score=275.30 Aligned_cols=317 Identities=18% Similarity=0.212 Sum_probs=234.0
Q ss_pred CCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHH
Q psy8682 1504 PVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSR 1583 (1956)
Q Consensus 1504 ~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYee 1583 (1956)
.+.+.+...|+|++|++++....... |. +... |..++ ..+..+++|++
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~--p~---------------~~~~-------~~~la--------~~~~~~~~~~~ 51 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQE--PD---------------NTGV-------LLLLS--------SIHFQCRRLDR 51 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC--TT---------------CHHH-------HHHHH--------HHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------------CHHH-------HHHHH--------HHHHHcCCHHH
Confidence 34566778889999999876543321 11 1122 22333 34556778899
Q ss_pred HHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------------------------
Q psy8682 1584 NQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD-------------------------- 1637 (1956)
Q Consensus 1584 ALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPd-------------------------- 1637 (1956)
|+.. |++++++.|.+ +.+++.+|.++...|++++|+..+..++..+|.
T Consensus 52 A~~~--~~~al~~~p~~----~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (388)
T d1w3ba_ 52 SAHF--STLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp HHHH--HHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred HHHH--HHHHHHhCCCC----HHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9988 88888876654 458999999999999999999888877765543
Q ss_pred ------------------------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q psy8682 1638 ------------------------------------------NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675 (1956)
Q Consensus 1638 ------------------------------------------naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeA 1675 (1956)
++.++..+|..+...|++++|...++++++.+|++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T d1w3ba_ 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHH
Confidence 34556666677777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1676 LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1676 l~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
+..+|.++...|++++|+..++++... .|. ....+..+|.++...|++++|+..|++++++
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSL----SPN---------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHH----hhh---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777777777777777777777777766 333 3345566777777778888888888888777
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
+|++ +.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|+++++++|+++.+++
T Consensus 267 ~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T d1w3ba_ 267 QPHF---PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp CSSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 7777 7777777877777788888888888777777777777777888887788888888888888777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcc
Q psy8682 1836 NLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKE 1880 (1956)
Q Consensus 1836 ~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~ 1880 (1956)
.+|.+|..+|++++|+.+|++|++++|++++++.++|.++..+|+
T Consensus 344 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 788888888888888888888888888777777777777766553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.5e-28 Score=274.46 Aligned_cols=295 Identities=47% Similarity=0.773 Sum_probs=253.6
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
|++++.+.++||..+....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++
T Consensus 4 ~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~ 83 (323)
T d1fcha_ 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83 (323)
T ss_dssp HHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc
Confidence 78899999999877777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc---hhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS---KLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~---Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
|++..++..+|.+|...|++++|+..+++++.. .|. ........ ...............+...+.+.+|.
T Consensus 84 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (323)
T d1fcha_ 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRY----TPA---YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVK 156 (323)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----STT---TGGGCC---------------CTTHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhhHHHh----ccc---hHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999 776 22222110 00011111222334455677889999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
..|.++++.+|.. ..+.++..+|.++...|++++|+..|++++...|+++.+|..+|.++..+|++++|+.+|++++++
T Consensus 157 ~~~~~al~~~p~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 235 (323)
T d1fcha_ 157 ELFLAAVRLDPTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 235 (323)
T ss_dssp HHHHHHHHHSTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc-cccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence 9999999999986 668899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+|+++.+++.+|.+|..+|++++|+.+|++|++++|++..++..++.++ ..+|..++.++..+++.
T Consensus 236 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-------~~~~~~l~~al~~~~~~ 301 (323)
T d1fcha_ 236 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS-------ENIWSTLRLALSMLGQS 301 (323)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC-------HHHHHHHHHHHHHHTCG
T ss_pred hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHH-------HHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999998888777644 56678888888777764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.8e-27 Score=265.32 Aligned_cols=295 Identities=19% Similarity=0.245 Sum_probs=270.0
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.-.++|++|+.. |+++++..|.+ +.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.+|...|++
T Consensus 10 ~~~G~~~~A~~~--~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 10 YQAGDFEAAERH--CMQLWRQEPDN----TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHTCHHHHHHH--HHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHH--HHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 345789999998 99999876654 459999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-----------------------------------------------------------------
Q psy8682 1656 PQAIAALSKCLSIEP----------------------------------------------------------------- 1670 (1956)
Q Consensus 1656 eEALe~yeKALeLdP----------------------------------------------------------------- 1670 (1956)
++|+..+..+++..|
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 999999987766544
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHH
Q psy8682 1671 ---KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLS 1747 (1956)
Q Consensus 1671 ---dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle 1747 (1956)
++..++..+|..+...|++++|...++++++. +|+ ...++..+|.++...|++++|+.
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~---------------~~~~~~~l~~~~~~~~~~~~A~~ 224 (388)
T d1w3ba_ 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPN---------------FLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHTTTCTTHHHH
T ss_pred cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh----Ccc---------------cHHHHHHHhhhhhccccHHHHHH
Confidence 34556777788888899999999999999988 666 45567889999999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1748 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1748 ~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
.+.++....|.. ...+..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|++++...
T Consensus 225 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 301 (388)
T d1w3ba_ 225 AYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHhhhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1828 PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1828 PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
|.+...+..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++.+|+ ..+++|+.+.+.+
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTF 372 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTC
T ss_pred CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999988 7788888776654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.7e-21 Score=221.80 Aligned_cols=252 Identities=17% Similarity=0.153 Sum_probs=215.2
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+.-.++|++|+.. |+++++.+|.+ +.+++.+|.++...|++++|+.+|.++++++|++..++..+|.+|...|
T Consensus 28 ~~~~~g~~~~A~~~--~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 28 RRLQEGDLPNAVLL--FEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHH--HHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 34456789999999 99999876664 5599999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEAL---------------MAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl---------------~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
++++|+..+++++...|...... ......+...+.+.+|+..+.+++.. +|+ .
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~p~---~----- 169 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL----DPT---S----- 169 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH----STT---S-----
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH----hhc---c-----
Confidence 99999999999999988754321 11223345567789999999999998 776 1
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
..+..+..+|.++...|++++|+..|++++..+|++ +.++..+|.+|..+|++++|+.+|+++++++|+++.
T Consensus 170 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 170 -----IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp -----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -----cccccchhhHHHHHHHHHHhhhhccccccccccccc---ccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 234567889999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH-----------HHHHHHHHHHcCCHHHHH
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA-----------RYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA-----------~~~LA~ay~klGdyEEAi 1851 (1956)
++..+|.+|..+|++++|+..|++|++++|++..+ +..++.++..+|+.+.+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999998887654 444566666666655443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=9.9e-22 Score=226.53 Aligned_cols=242 Identities=12% Similarity=0.143 Sum_probs=204.3
Q ss_pred cccchhhHHHhhhccc-ccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcc--------------c
Q psy8682 683 KADALPSKLTRLANHT-LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD--------------E 747 (1956)
Q Consensus 683 k~~~l~~~~~~l~~~~-l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sg--------------e 747 (1956)
++.++|..|++++++- +++++. ....++|..+|++|+...|. ++++|+.++..+...+ .
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~---~~~~~Rv~~vyerAl~~~~~---~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~ 79 (308)
T d2onda1 6 QQVDMWKKYIQWEKSNPLRTEDQ---TLITKRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCH---HHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccccc---chhHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCchHHHHHHHhhcccc
Confidence 4678999999997741 111111 12456899999999999997 8999999999886544 3
Q ss_pred HHHHHHHHHHHHhh-CCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHH
Q psy8682 748 YDKAVDCFRSALQV-RPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMV-ISNWIKYAQWEES 825 (1956)
Q Consensus 748 yEkArelFerALkk-fP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s-~~lWlkYAqfE~~ 825 (1956)
+++|+++|++|++. .|.+..+|..|+.++. ..++ .++|+.+|++++...+.+ ..+|+.|+.++.+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~------~~~~-------~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~ 146 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEE------SRMK-------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH------HTTC-------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH------hccc-------HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 58899999999985 5888999999997765 2223 457889999999877654 5689999999999
Q ss_pred cCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 826 QKQVDRARSIYERALDVDHRNITLWLKYTELEMR-NRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVF 904 (1956)
Q Consensus 826 ~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k-~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~Vf 904 (1956)
.|++++||.+|++++...|....+|..++.+|.. .|+++.|+.+|++++..+|....+|..|++||...|++++||.+|
T Consensus 147 ~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~f 226 (308)
T d2onda1 147 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999999999999999999999999999999876 589999999999999999999999999999999999999999999
Q ss_pred Hhhc---c----CchHHHHHHHHhhcccccchHHHHHHHHHHHhcccc
Q psy8682 905 HRDS---I----SQVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECC 945 (1956)
Q Consensus 905 ERAL---~----~~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~ 945 (1956)
+||+ + ....+|..|++||..+ |++....++.+|+.+.+|
T Consensus 227 e~ai~~~~~~~~~~~~iw~~~~~fE~~~--G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 227 ERVLTSGSLPPEKSGEIWARFLAFESNI--GDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHSSSSCGGGCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCc
Confidence 9998 2 3456999999999885 477888888888777655
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=8.9e-20 Score=210.04 Aligned_cols=209 Identities=13% Similarity=0.108 Sum_probs=180.2
Q ss_pred ccchhhHHHhhhcccccccCCC----CchhHHHHHHHHHHHHHHh-CCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHH
Q psy8682 684 ADALPSKLTRLANHTLTFRSPL----SSREIHQQVLSLYLNAARQ-CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 758 (1956)
Q Consensus 684 ~~~l~~~~~~l~~~~l~~en~~----~~~~~~e~v~~vF~~A~q~-n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerA 758 (1956)
+-+||-.|+..++...+..... ......+.+.++|++|++. +|. +..+|..++.++...|++++|+.+|+++
T Consensus 49 ~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~---~~~l~~~ya~~~~~~~~~~~a~~i~~~~ 125 (308)
T d2onda1 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4579999999776544332211 1233567889999999986 454 7899999999999999999999999999
Q ss_pred HhhCCCCH-HHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q psy8682 759 LQVRPDFT-ELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEES-QKQVDRARSIY 836 (1956)
Q Consensus 759 LkkfP~d~-~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~-~Gd~ErARsIf 836 (1956)
++..|.+. .+|+.|+.++. ..+...+||.+|++++..++.+..+|+.++.++.. .|+.++|+.+|
T Consensus 126 l~~~~~~~~~~w~~~~~~~~-------------~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~ 192 (308)
T d2onda1 126 LAIEDIDPTLVYIQYMKFAR-------------RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHH-------------HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHH-------------HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 99998774 58999997765 22335689999999999999999999999999875 68999999999
Q ss_pred HHhhcccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 837 ERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPR----ANQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 837 ERALs~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pk----s~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
++++..+|.+..+|+.|++|+.+.|++++||.+|+++++.+|. ...+|..|+.||..+|+++.++.|++|+.
T Consensus 193 e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997763 47899999999999999999999999975
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.4e-18 Score=202.00 Aligned_cols=236 Identities=11% Similarity=0.053 Sum_probs=210.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ-DPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd-yeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
..+++..+|.++.+.+.+++|+.+++++++++|++..+|+.+|.++...|+ +++|+..++++++.+|++..+|..+|.+
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 567888999999999999999999999999999999999999999999875 8999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCC
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID 1762 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~ 1762 (1956)
+..+|++++|+..+.+++++ +|+ ...++.++|.++...|++++|+..++++++++|.+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~----dp~---------------n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n--- 179 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQ----DAK---------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--- 179 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---
T ss_pred HHhhccHHHHHHHHhhhhhh----hhc---------------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc---
Confidence 99999999999999999999 777 45678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--cHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDE------YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG--FVRAR 1834 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGd------yeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd--naeA~ 1834 (1956)
..+|+++|.++...+. +++|+..+.+++.++|++..+|..+|.++... ..+++...+++++++.|+ +..++
T Consensus 180 ~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 258 (315)
T d2h6fa1 180 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLI 258 (315)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHH
Confidence 9999999999988776 68999999999999999999999999986654 468899999999988776 45666
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHhcC
Q psy8682 1835 YNLGITCVHL--GANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1835 ~~LA~ay~kl--GdyEEAie~yekALeLdP 1862 (1956)
..++.+|... ++.+.+...+++++.+.+
T Consensus 259 ~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~ 288 (315)
T d2h6fa1 259 AFLVDIYEDMLENQCDNKEDILNKALELCE 288 (315)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 7777777543 566667777777776543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.2e-18 Score=200.39 Aligned_cols=221 Identities=12% Similarity=0.054 Sum_probs=200.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCCCc
Q psy8682 1632 AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEAC-LHDALDTLKDKIRPGQESNPRP 1710 (1956)
Q Consensus 1632 LeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGd-ydEALe~leKALelg~e~dPd~ 1710 (1956)
+..+|+..+++..+|.++...+.+++|+.+++++++++|++..+|+.+|.++..+|+ +++|+.+++++++. +|+
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~----~p~- 110 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPK- 110 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTT-
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----HHh-
Confidence 445677788999999999999999999999999999999999999999999999875 99999999999999 777
Q ss_pred hhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1711 SAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1711 eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
...++..+|.++..+|++++|+..+.++++++|.+ ..+|.++|.++...|++++|+.+|++++
T Consensus 111 --------------~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n---~~a~~~~~~~~~~~~~~~~Al~~~~~al 173 (315)
T d2h6fa1 111 --------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---YHAWQHRQWVIQEFKLWDNELQYVDQLL 173 (315)
T ss_dssp --------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred --------------hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc---hHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55678899999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHCCC------hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1791 QVRPDDSRLWNRLGASLANGNR------PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1791 el~PdnaeA~~nLG~ay~qlGr------yeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
+++|.+..+|+++|.++...++ +++|+..+.++++++|++..+|++++.++...| ..++...+++++++.|+.
T Consensus 174 ~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 174 KEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTC
T ss_pred HHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCc
Confidence 9999999999999999998887 579999999999999999999999999876554 688999999999999986
Q ss_pred hhc--hhccccch
Q psy8682 1865 HDG--LTPHGLEP 1875 (1956)
Q Consensus 1865 ~dA--~~~LG~l~ 1875 (1956)
... +..++.++
T Consensus 253 ~~~~~~~~l~~~y 265 (315)
T d2h6fa1 253 SSPYLIAFLVDIY 265 (315)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 543 33444444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=5.8e-18 Score=186.36 Aligned_cols=226 Identities=14% Similarity=-0.016 Sum_probs=163.7
Q ss_pred hHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q psy8682 1580 DFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659 (1956)
Q Consensus 1580 dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEAL 1659 (1956)
+++.++.. +++++......+...+.+++.+|.+|...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 14 ~~e~al~~--~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 14 QQEVILAR--MEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHH--HHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH--HHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 34444444 4555543332333367899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc
Q psy8682 1660 AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR 1739 (1956)
Q Consensus 1660 e~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l 1739 (1956)
..|+++++++|++..++.++|.+|..+|++++|+..++++++. +|. .......++..+...
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~---------------~~~~~~~~~~~~~~~ 152 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPN---------------DPFRSLWLYLAEQKL 152 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh----ccc---------------cHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998 666 122233445555566
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFN----LSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~----~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
+..+.+...........+.. .. ..+...+. ..+.++.+...+..+....|....+++.+|.+|..+|++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 227 (259)
T d1xnfa_ 153 DEKQAKEVLKQHFEKSDKEQ---WG--WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 227 (259)
T ss_dssp CHHHHHHHHHHHHHHSCCCS---TH--HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHhhccchhh---hh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHH
Confidence 65555555555555544443 11 11112211 12234455555555555666666777778888888888888
Q ss_pred HHHHHHHHHhhCCCcH
Q psy8682 1816 AVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1816 Aie~yeKALeL~Pdna 1831 (1956)
|+.+|++++..+|++.
T Consensus 228 A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 228 ATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHcCCCCH
Confidence 8888888887777653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=4.6e-19 Score=204.94 Aligned_cols=264 Identities=9% Similarity=-0.084 Sum_probs=230.7
Q ss_pred HHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1581 FSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQ----------GDLPSAILYLEAAAKQEPDNAEVWLSLGISLA 1650 (1956)
Q Consensus 1581 YeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~----------GdydEAIe~fekALeldPdnaeAl~~LA~ay~ 1650 (1956)
+++|+.. +++++..+|+++ .+|..++.++... |++++|+.+++++++.+|++..+|+.+|.++.
T Consensus 45 ~~~al~~--~~~~l~~~P~~~----~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 45 DESVLEL--TSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (334)
T ss_dssp SHHHHHH--HHHHHHHCTTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHH--HHHHHHHCCCcH----HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence 3678877 888888776654 4777666665543 45899999999999999999999999999998
Q ss_pred HcCC--hHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHH
Q psy8682 1651 ENEQ--DPQAIAALSKCLSIEPKNLEAL-MAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLAN 1727 (1956)
Q Consensus 1651 ~lGd--yeEALe~yeKALeLdPdnaeAl-~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~ 1727 (1956)
..++ +++|+..+.++++.+|.+..++ ..+|.++...+.+++|+..+++++.. +|. ...
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~----~p~---------------~~~ 179 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR----NFS---------------NYS 179 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT----TCC---------------CHH
T ss_pred HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc----CCC---------------CHH
Confidence 8775 8999999999999999999886 56788999999999999999999999 776 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay 1807 (1956)
++.++|.++...|++++|...+.++++..|.. .. ....+...+..++|...+.+++...|....++..+|.++
T Consensus 180 a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~----~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~ 252 (334)
T d1dcea1 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE---LE----LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKS 252 (334)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH---HH----HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH---HH----HHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 78899999999999999999999988887765 33 334455678888999999999999999999999999999
Q ss_pred HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
...|++.+|+..+.+++..+|.+..++..+|.++..+|++++|+.+|+++++++|.+...|..++..+.
T Consensus 253 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 253 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998888887765443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=5.4e-17 Score=178.55 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=183.3
Q ss_pred ChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1620 DLPSAILYLEAAAKQEP----DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDT 1695 (1956)
Q Consensus 1620 dydEAIe~fekALeldP----dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~ 1695 (1956)
+.+.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 45677788888886543 34679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy8682 1696 LKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL 1775 (1956)
Q Consensus 1696 leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~ 1775 (1956)
|++++++ +|+ ...++.++|.++..+|++++|+..|+++++.+|.+ ......++..+..
T Consensus 94 ~~~al~~----~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~ 151 (259)
T d1xnfa_ 94 FDSVLEL----DPT---------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND---PFRSLWLYLAEQK 151 (259)
T ss_dssp HHHHHHH----CTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred hhHHHHH----Hhh---------------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHH
Confidence 9999999 776 34567899999999999999999999999999998 7777888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1776 SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA----NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1776 lGdyeEAie~fekALel~PdnaeA~~nLG~ay~----qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
.+..+.+...........+..... .+...+. ..+.++.+...+..++...|....+++++|.+|..+|++++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 229 (259)
T d1xnfa_ 152 LDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 229 (259)
T ss_dssp HCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHH
Confidence 887776666666666655544321 1111111 2233555666666666777888889999999999999999999
Q ss_pred HHHHHHHHhcCCChh
Q psy8682 1852 EHFLTALNQQAATHD 1866 (1956)
Q Consensus 1852 e~yekALeLdPdn~d 1866 (1956)
.+|++|+..+|++..
T Consensus 230 ~~~~~al~~~p~~~~ 244 (259)
T d1xnfa_ 230 ALFKLAVANNVHNFV 244 (259)
T ss_dssp HHHHHHHTTCCTTCH
T ss_pred HHHHHHHHcCCCCHH
Confidence 999999999998653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=4.6e-16 Score=173.36 Aligned_cols=282 Identities=11% Similarity=-0.053 Sum_probs=234.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-----AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN------ 1672 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn-----aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn------ 1672 (1956)
.++....+|.+++..|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+..|++++++.+..
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 45677788999999999999999999999999876 4578899999999999999999999999875432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
..++..++.++...|++..|...+.+++.. ........ .......+..+|.++...|+++.|...+.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----------~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 159 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQL----------INEQHLEQ-LPMHEFLVRIRAQLLWAWARLDEAEASARSG 159 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTTCTT-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHhcccch-hhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence 346788999999999999999999999987 22211111 2334556778999999999999999999999
Q ss_pred HHhCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1753 ARQCPSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD-------DSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1753 Lel~P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd-------naeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+...+.. .....++..++..+...+++.++...+.++...... ...++..+|.++...|++++|...++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (366)
T d1hz4a_ 160 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 239 (366)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9987654 223567788899999999999999999998876432 2456788899999999999999999999
Q ss_pred HhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCChhchhccccchhhhcccHHHHHHHHHhcc
Q psy8682 1824 LQLSPGF----VRARYNLGITCVHLGANTQAVEHFLTALNQ------QAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFH 1893 (1956)
Q Consensus 1824 LeL~Pdn----aeA~~~LA~ay~klGdyEEAie~yekALeL------dPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al 1893 (1956)
+...+.+ ...+.++|.++...|++++|..++++++.. .|....++..+|.++...|++.+|+ ..++.|+
T Consensus 240 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~l~~Al 318 (366)
T d1hz4a_ 240 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ-RVLLDAL 318 (366)
T ss_dssp CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred HHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHH
Confidence 9876653 456788999999999999999999999854 4556678999999999999998887 7788877
Q ss_pred ccCC
Q psy8682 1894 PPFG 1897 (1956)
Q Consensus 1894 ~l~g 1897 (1956)
.+..
T Consensus 319 ~l~~ 322 (366)
T d1hz4a_ 319 KLAN 322 (366)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=1.3e-17 Score=192.78 Aligned_cols=256 Identities=9% Similarity=-0.054 Sum_probs=225.9
Q ss_pred HcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1617 RQG-DLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN----------EQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685 (1956)
Q Consensus 1617 k~G-dydEAIe~fekALeldPdnaeAl~~LA~ay~~l----------GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~ 1685 (1956)
..+ ..++|+.+++++++.+|++..+|..++.++... |++.+|+.+++++++.+|++..++..+|.++..
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence 344 458999999999999999999998888776654 347899999999999999999999999999888
Q ss_pred cCC--HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1686 EAC--LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1686 lGd--ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
.++ +++|+..+.+++.. +|+ .. ......+|.++...+.+++|+..++++++.+|.+ .
T Consensus 120 ~~~~~~~~a~~~~~~al~~----~~~---~~-----------~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~---~ 178 (334)
T d1dcea1 120 LPEPNWARELELCARFLEA----DER---NF-----------HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---Y 178 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHH----CTT---CH-----------HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC---H
T ss_pred hccccHHHHHHHHHHHHhh----Cch---hh-----------hhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC---H
Confidence 765 89999999999999 776 11 1123567889999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
.+|+.+|.++..+|++++|+..+.+++.+.|.....+ ..+...+..++|...|.+++...|....++..+|.++..
T Consensus 179 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~ 254 (334)
T d1dcea1 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV 254 (334)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 9999999999999999999999999988877655444 345567888899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
.|++.+|+..+.+++..+|++..++..+|.++...|++.+++ .++.+++.+-+.
T Consensus 255 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~-~~~~~ai~ldP~ 308 (334)
T d1dcea1 255 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPM 308 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHH-HHHHHHHHHCGG
T ss_pred HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCcc
Confidence 999999999999999999999999999999999999998887 888888887664
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=2.7e-15 Score=167.03 Aligned_cols=275 Identities=9% Similarity=-0.025 Sum_probs=227.4
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCC-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPM-QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSL 1645 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~-~daeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~L 1645 (1956)
......+++++|+.. |++++...|.++. ....++..+|.++...|++++|+..|++++...+.. ..++..+
T Consensus 20 ~~~~~~g~~~~A~~~--~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 20 QVAINDGNPDEAERL--AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHTTCHHHHHHH--HHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHH--HHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 345667899999998 9999988877653 235678889999999999999999999999875432 4578899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1646 GISLAENEQDPQAIAALSKCLSIEP--------KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1646 A~ay~~lGdyeEALe~yeKALeLdP--------dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
+.++...|++..|...+.+++.+.+ .....+..+|.++...|+++.|...+.+++.. .+. ..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~----~~~------~~ 167 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV----LSS------YQ 167 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTT------SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH----hhh------hh
Confidence 9999999999999999999987642 12346778999999999999999999999988 333 11
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS----IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~----~~a~a~~~LG~ly~~lGdyeEAie~fekALel~ 1793 (1956)
.......+..++..+...+++.++...+.++........ ....++..+|.++...|++++|...+++++...
T Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 243 (366)
T d1hz4a_ 168 ----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 243 (366)
T ss_dssp ----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred ----hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 123445677889999999999999999999988755431 124467788999999999999999999999887
Q ss_pred CCC----HHHHHHHHHHHHHCCChHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1794 PDD----SRLWNRLGASLANGNRPEEAVEAYHTALQL------SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1794 Pdn----aeA~~nLG~ay~qlGryeEAie~yeKALeL------~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+.+ ...+.++|.++...|++++|+..+++++.. .|....++..+|.+|..+|++++|+++|++|+++.+.
T Consensus 244 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 654 466788999999999999999999999854 3456778999999999999999999999999998664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.9e-15 Score=184.39 Aligned_cols=229 Identities=14% Similarity=0.051 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1623 SAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1623 EAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
+|+.+|++|+++.|+.+.++.++|.++...+++++| |++++..+|+...++...+.+. ...|..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence 688888888888888888888888888888888776 7888888887666554333322 12356677777777765
Q ss_pred CCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1703 GQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1703 g~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
. ..++ ... .....++.++...+.|+.|+..+.+++.++|.+ ...+..+|.++...|++++|
T Consensus 79 ~--~~~~---~~~-----------~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~---~~~~~~lg~~~~~~~~~~~A 139 (497)
T d1ya0a1 79 R--ANPN---RSE-----------VQANLSLFLEAASGFYTQLLQELCTVFNVDLPC---RVKSSQLGIISNKQTHTSAI 139 (497)
T ss_dssp S--SCTT---TTH-----------HHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------
T ss_pred c--cCcc---HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhh---HHHHHHhHHHHHhCCCHHHH
Confidence 1 0111 000 111223455556777888888888888888887 77888888888888999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
+..+++++..++ ..++.++|.++...|++++|+.+|++|++++|+++.++++||.++...|++.+|+.+|.+|+.++|
T Consensus 140 ~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~ 217 (497)
T d1ya0a1 140 VKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp ---CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 988888887665 467888899999999999999999999999999999999999999999999999999999999998
Q ss_pred CChhchhccccchhh
Q psy8682 1863 ATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1863 dn~dA~~~LG~l~~~ 1877 (1956)
.++.++.+++.++..
T Consensus 218 ~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 218 PFPAASTNLQKALSK 232 (497)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=2e-13 Score=155.28 Aligned_cols=217 Identities=12% Similarity=0.095 Sum_probs=168.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1620 DLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE------PKNLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1620 dydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd------PdnaeAl~~LA~aY~~lGdydEAL 1693 (1956)
+|++|..+|.++ |.+|...|++++|+.+|.+++++. ++...++.++|.+|...|++++|+
T Consensus 32 ~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~ 97 (290)
T d1qqea_ 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (290)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 466777666654 788999999999999999998873 223467899999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHH
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS-REIHQQVLSLYLNAARQCPSQ---SIDPDVQNGL 1769 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~-lGdyeEAle~LekALel~P~n---~~~a~a~~~L 1769 (1956)
.++++++.+ +..... ......++..+|.++.. .|++++|+.+|++++++.+.. .....++..+
T Consensus 98 ~~~~~a~~~----------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~l 164 (290)
T d1qqea_ 98 DSLENAIQI----------FTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164 (290)
T ss_dssp HHHHHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHH----------hhhccc---chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Confidence 999999998 444331 23456678889988865 699999999999999875433 1124568899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH-----HHHHH
Q psy8682 1770 GVLFNLSDEYDKAVDCFRSALQVRPDDS-------RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR-----ARYNL 1837 (1956)
Q Consensus 1770 G~ly~~lGdyeEAie~fekALel~Pdna-------eA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae-----A~~~L 1837 (1956)
|.++..+|+|++|+..|++++...+... ..+...|.++...|++..|...++++++++|.... ....+
T Consensus 165 a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l 244 (290)
T d1qqea_ 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSL 244 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHH
Confidence 9999999999999999999999887653 45678899999999999999999999999886543 33455
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHHhcCC
Q psy8682 1838 GITCVH--LGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1838 A~ay~k--lGdyEEAie~yekALeLdPd 1863 (1956)
..++.. .+++++|+..|+++.+++|-
T Consensus 245 ~~a~~~~d~e~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 245 IDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence 555544 35689999999887777654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.8e-12 Score=147.43 Aligned_cols=212 Identities=9% Similarity=0.025 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------H
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEP------DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN------L 1673 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldP------dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn------a 1673 (1956)
+.+...|.+|...|++++|+.+|.+++++.. ..+.++..+|.+|..+|++++|+.+|++++++.+.. .
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 3566779999999999999999999998732 235689999999999999999999999999986544 4
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTN-EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1674 eAl~~LA~aY~~-lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
.++..+|.+|.. .|++++|+.+|++++++ +.... .......++.++|.++..+|++++|+..|+++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l----------~~~~~---~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~ 184 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEW----------YAQDQ---SVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----------HHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHH----------HHhcC---chhhhhhHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 578889988865 69999999999999988 33222 12345667889999999999999999999999
Q ss_pred HHhCCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH--CCChHHHHHHHH
Q psy8682 1753 ARQCPSQS----IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS-----RLWNRLGASLAN--GNRPEEAVEAYH 1821 (1956)
Q Consensus 1753 Lel~P~n~----~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna-----eA~~nLG~ay~q--lGryeEAie~ye 1821 (1956)
+...+... .....+...|.++...|++..|...++++++++|... .....++.++.. .+++++|+..|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99987761 1124567889999999999999999999999988643 344556666554 456999999999
Q ss_pred HHHhhCCCc
Q psy8682 1822 TALQLSPGF 1830 (1956)
Q Consensus 1822 KALeL~Pdn 1830 (1956)
++.+++|..
T Consensus 265 ~~~~lD~~~ 273 (290)
T d1qqea_ 265 NFMRLDKWK 273 (290)
T ss_dssp TSSCCCHHH
T ss_pred HHhhcCHHH
Confidence 888776543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.3e-13 Score=167.26 Aligned_cols=228 Identities=11% Similarity=0.014 Sum_probs=153.6
Q ss_pred HHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy8682 1583 RNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAAL 1662 (1956)
Q Consensus 1583 eALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~y 1662 (1956)
+|+.. |++|+++.|+.+. +++.+|.++..+|++++| |++++..+|+.+.+....+.+. ...|..+++.+
T Consensus 4 eA~q~--~~qA~~l~p~~a~----a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~ 72 (497)
T d1ya0a1 4 QSAQY--LRQAEVLKADMTD----SKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTL 72 (497)
T ss_dssp HHHHH--HHHHHHHHGGGTC----SSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHH
T ss_pred HHHHH--HHHHHHcCCCCHH----HHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHH
Confidence 45555 8889988888776 788899999999999876 8999999987666554333332 22366778888
Q ss_pred HHHHHhC--CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc
Q psy8682 1663 SKCLSIE--PKNLE-ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR 1739 (1956)
Q Consensus 1663 eKALeLd--Pdnae-Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l 1739 (1956)
++..+.. ++... ....++.++...+.|+.|+..+.+++.+ +|. ....+.++|..+...
T Consensus 73 r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l----~~~---------------~~~~~~~lg~~~~~~ 133 (497)
T d1ya0a1 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV----DLP---------------CRVKSSQLGIISNKQ 133 (497)
T ss_dssp HHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------------
T ss_pred HHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----Chh---------------hHHHHHHhHHHHHhC
Confidence 8877654 22222 2223455555666777777777766666 444 344567788999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~ 1819 (1956)
|++++|...+.+++..++. .++..+|.++..+|++++|+.+|++|+.++|++..+|++||.++...|++.+|+.+
T Consensus 134 ~~~~~A~~~~~~al~~~~~-----~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~ 208 (497)
T d1ya0a1 134 THTSAIVKPQSSSCSYICQ-----HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208 (497)
T ss_dssp ---------CCHHHHHHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999887664 47888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1820 YHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1820 yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
|.+|+...|..+.++.+|+.++.+..
T Consensus 209 y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 209 YCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999998887654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.1e-12 Score=128.73 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
+...|..++..|+|++|+.+|+++++.+|.++.+|.++|.+|..+|++++|+..|.++++++|+++.+++++|.++..+|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1846 ANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
++++|+..|+++++++|+++.++..++.
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6666666666666666666666555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=5.6e-12 Score=136.20 Aligned_cols=147 Identities=11% Similarity=0.053 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
+..++..|..+...|++++|+..|.++ .+.++.+++++|.+|..+|++++|+..|++|++++|+++.+++++|.+|.
T Consensus 5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 335678899999999999999999864 56788999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCC--chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPR--PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd--~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
.+|++++|+..|++++.. .+. ...|..+.... ......+++++|.++...|++++|++.+.+++++.|..
T Consensus 82 ~~g~~~~A~~~~~kAl~~----~~~n~~~~~~~~~~~~-~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQ----LRGNQLIDYKILGLQF-KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HTTCHHHHHHHHHHHHHT----TTTCSEEECGGGTBCC-EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hhccHHHHHHHHHHHHHh----CccCchHHHHHhhhhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999999987 443 11122221111 11234566777777777777777777777777777664
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=8.3e-12 Score=134.83 Aligned_cols=131 Identities=11% Similarity=0.124 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay 1807 (1956)
.+++.|..+...|++++|++.|.++ .+.+ +.+++++|.+|..+|++++|+.+|++|++++|+++.+|+++|.++
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV---QDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS---SSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc---CCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3456799999999999999999863 4555 889999999999999999999999999999999999999999999
Q ss_pred HHCCChHHHHHHHHHHHhhCCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGF----------------VRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~Pdn----------------aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
.++|++++|+..|++++...+.+ ..+++++|.++..+|++++|++.|++|+.+.|+.
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999865432 4788999999999999999999999999999973
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.2e-11 Score=128.65 Aligned_cols=126 Identities=15% Similarity=0.088 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
.+..+...|..++..|+|++|+.+|+++++++|++ +.+|.++|.++..+|++++|+..|+++++++|++..++..+|
T Consensus 9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g 85 (159)
T d1a17a_ 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 85 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh---hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHH
Confidence 34556677888888888888888888888888888 888888888888888888888888888888888888888888
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--cCCHHHHHHH
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH--LGANTQAVEH 1853 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k--lGdyEEAie~ 1853 (1956)
.++..+|++++|+.+|++++.++|++..++..++.+... .+.+++|+..
T Consensus 86 ~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 86 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888888888888888888888888777766433 3335555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=7.5e-12 Score=124.60 Aligned_cols=111 Identities=19% Similarity=0.150 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay 1807 (1956)
.+...|..++..|++++|+.+|.++++.+|.+ +.++..+|.+|..+|++++|+..|.++++++|+++.+|+++|.++
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence 45678999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
..+|++++|+..|+++++++|+++.++..++.+.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999988765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=3.2e-12 Score=135.10 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|...|++++|+.+|++|++++|+++.+|+++|.+|.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 56677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
.+|++++|+..|++|+.++|++...+...+
T Consensus 84 ~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 113 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDI 113 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHH
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 999999999999999998887666554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=6.2e-12 Score=130.76 Aligned_cols=114 Identities=11% Similarity=0.202 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..+...|..|+..|+|++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|++..++..+|.++.
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.+|++++|+.+|++++.++|+++.++..++.+..
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999888776543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.28 E-value=9.6e-10 Score=121.65 Aligned_cols=226 Identities=16% Similarity=0.190 Sum_probs=186.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE----NEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~----lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
++++++.+|..++..+++++|+.+|+++.+. +++.+.+.||.+|.. ..++..|..++..+... .++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence 4669999999999999999999999999875 689999999999998 67999999999998765 477788889
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHH----hcCCHHHHHHHHHH
Q psy8682 1680 SICFTN----EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS----SREIHQQVLSLYLN 1751 (1956)
Q Consensus 1680 A~aY~~----lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~----~lGdyeEAle~Lek 1751 (1956)
|.++.. ..+.+.|...++++... .+. .+...++..+. .......|...+.+
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~----g~~-----------------~a~~~l~~~~~~~~~~~~~~~~a~~~~~~ 135 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDL----KYA-----------------EGCASLGGIYHDGKVVTRDFKKAVEYFTK 135 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH-----------------HHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhh----hhh-----------------hHHHhhcccccCCCcccchhHHHHHHhhh
Confidence 888765 46889999999999877 222 23344555555 35667888888888
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHH
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKA 1823 (1956)
.... .+ ...+..+|.++.. ..+...+..+++.+.+ ..++.+.+++|.+|.. ..++++|+.+|+++
T Consensus 136 ~~~~--~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~a 208 (265)
T d1ouva_ 136 ACDL--ND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA 208 (265)
T ss_dssp HHHT--TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hhcc--cc---cchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhh
Confidence 7664 33 6788999999986 4567788888888876 5689999999999997 67899999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCC
Q psy8682 1824 LQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1824 LeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekALeLdPd 1863 (1956)
.+. +++.+.++||.+|.. ..++++|+++|++|......
T Consensus 209 a~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 209 CEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 887 568899999999986 44899999999999888654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=6.9e-12 Score=132.49 Aligned_cols=113 Identities=13% Similarity=0.015 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
+..+...|..++..|++++|+..|.++++++|.+ +.+|.++|.+|..+|++++|+.+|++|++++|+++.+|+++|.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~---~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 4456788999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
+|..+|++++|+..|+++++++|++...+...+..+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 999999999999999999998876543333333333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.22 E-value=1.6e-11 Score=121.35 Aligned_cols=107 Identities=35% Similarity=0.564 Sum_probs=101.2
Q ss_pred hhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q psy8682 1594 YTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673 (1956)
Q Consensus 1594 lqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna 1673 (1956)
+++.+.||..+.+..+.+|..+++.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++.
T Consensus 5 y~f~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 84 (112)
T d1hxia_ 5 YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 84 (112)
T ss_dssp CCCCSSCGGGGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc
Confidence 45667777666778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKI 1700 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKAL 1700 (1956)
.++..+|.+|...|++++|++.+++++
T Consensus 85 ~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 85 AVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999999999999999999999976
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=9e-11 Score=124.07 Aligned_cols=120 Identities=16% Similarity=0.116 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSI------------DPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~------------~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
.+..+...|..++..|++++|+..|++++...|.... ...++.++|.+|..+|++++|+.++++++.+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 4556667888888888888888888888888776510 0123334444444444444444444444444
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1793 ~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...++.+....
T Consensus 92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=3.7e-10 Score=119.28 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---------------SRLWNRLGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---------------aeA~~nLG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
+..+...|..++..|+|++|+..|++++...|.. ..++.++|.+|.++|++++|+.++++++.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 4567789999999999999999999999987653 2567889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHH
Q psy8682 1828 PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSD 1883 (1956)
Q Consensus 1828 PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~se 1883 (1956)
|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.+...++.+....++...
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998866655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.12 E-value=7.6e-09 Score=114.27 Aligned_cols=223 Identities=16% Similarity=0.156 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCchhh
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN----EACLHDALDTLKDKIRPGQESNPRPSAY 1713 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~----lGdydEALe~leKALelg~e~dPd~eay 1713 (1956)
||.+++.+|..+...+++.+|+++|+++.+. ++..+++.||.+|.. ..++..|..++..+...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----------- 67 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----------- 67 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-----------
Confidence 5789999999999999999999999999875 588999999999987 67999999999998876
Q ss_pred hhhcCcchhhhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q psy8682 1714 KADALPSKLTRLANHTLTFRSPLSS----REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL----SDEYDKAVDC 1785 (1956)
Q Consensus 1714 ~~Ll~~~Kl~e~a~a~lnLA~ay~~----lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~----lGdyeEAie~ 1785 (1956)
....+...+|.++.. ..+.+.|...++.+....+ ..+...+|..+.. ......|...
T Consensus 68 ----------~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-----~~a~~~l~~~~~~~~~~~~~~~~a~~~ 132 (265)
T d1ouva_ 68 ----------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY-----AEGCASLGGIYHDGKVVTRDFKKAVEY 132 (265)
T ss_dssp ----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred ----------cccchhhccccccccccccchhhHHHHHHHhhhhhhhh-----hhHHHhhcccccCCCcccchhHHHHHH
Confidence 123345566766654 5788999999999988754 4467777777765 4557788888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q psy8682 1786 FRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTA 1857 (1956)
Q Consensus 1786 fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekA 1857 (1956)
+.+... +.+..++..||.++.. ..+...+..+++.+.+ +.++.+.++||.+|.. ..++++|+.+|+++
T Consensus 133 ~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~a 208 (265)
T d1ouva_ 133 FTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA 208 (265)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhh
Confidence 877665 5678899999999987 4567788888888875 4678999999999988 67899999999999
Q ss_pred HHhcCCChhchhccccchhh----hcccHHHHHHHHHhcccc
Q psy8682 1858 LNQQAATHDGLTPHGLEPRA----VKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1858 LeLdPdn~dA~~~LG~l~~~----lg~~seAIws~Lr~Al~l 1895 (1956)
.+. +++.+++++|.++.. .+++..|+ .++++|...
T Consensus 209 a~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~-~~~~kAa~~ 247 (265)
T d1ouva_ 209 CEL--ENGGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKL 247 (265)
T ss_dssp HHT--TCHHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHH
T ss_pred hcc--cCHHHHHHHHHHHHcCCCCccCHHHHH-HHHHHHHHC
Confidence 887 578899999998874 33565565 788877544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.10 E-value=2.1e-10 Score=113.25 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
.+.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++..+++.+|.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 56678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHH
Q psy8682 1846 ANTQAVEHFLTAL 1858 (1956)
Q Consensus 1846 dyEEAie~yekAL 1858 (1956)
++++|+++++++|
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888888888765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.10 E-value=2.8e-10 Score=118.20 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS-IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~-~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
..+..+...|..++..|+|.+|+..|.+++...+... ...... ......+. ..++.+
T Consensus 15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~-----------------~~~~~~~~-----~~~~~N 72 (153)
T d2fbna1 15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL-----------------LDKKKNIE-----ISCNLN 72 (153)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH-----------------HHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHH-----------------HHhhhhHH-----HHHHhh
Confidence 3455567788888888899999888888888776541 111100 00011111 235677
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
+|.+|.++|++++|+.+++++++++|.+..+++.+|.++..+|++++|+.+|+++++++|++.++...++.+..
T Consensus 73 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 73 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888887766655443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.09 E-value=2.7e-10 Score=119.85 Aligned_cols=123 Identities=17% Similarity=0.094 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-C-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS-I-----------DPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~-~-----------~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
..+..+...|..++..|++.+|+..|.+++...+... . ...++.++|.+|..+|++++|+..+++++.
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 4566677888889999999999999988888766541 1 112344455555555555555555555555
Q ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q psy8682 1792 VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1792 l~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGd 1846 (1956)
++|++..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....++
T Consensus 93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE 147 (168)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555555444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.09 E-value=6.6e-10 Score=116.85 Aligned_cols=128 Identities=14% Similarity=0.103 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---------------SRLWNRLGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---------------aeA~~nLG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
+..+...|..++..|+|.+|+..|++|+...+.. ..++.++|.||..+|++++|+.++++++.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 4567788999999999999999999999764431 3568899999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHH
Q psy8682 1828 PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890 (1956)
Q Consensus 1828 PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr 1890 (1956)
|++..+++.+|.++..+|++++|+..|++++.++|+++.+...++.+....+...+.-...++
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~ 157 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA 157 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776665443333333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.08 E-value=4.8e-10 Score=117.58 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..+...|..+...|++++|+..|.++++..+.. .+.....+...+.|....++.++
T Consensus 25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~nl 83 (169)
T d1ihga1 25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS---------------------RAAAEDADGAKLQPVALSCVLNI 83 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------------HHHSCHHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh---------------------hhhhhhHHHHHhChhhHHHHHHH
Confidence 344556778999999999999999999998753321 01111112223345555666677
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcc
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKE 1880 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~ 1880 (1956)
|.++.++|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+......
T Consensus 84 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 84 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777766666665554443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.07 E-value=2.2e-10 Score=120.17 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
+...|..+...|+|.+|+..|++++...+. ..+.....+...+.|....++.++|.++.++|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDADGAKLQPVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhh------------------hhhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence 456788888999999999999998864321 11222223344566778889999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCCc
Q psy8682 1846 ANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKL 1900 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~~ 1900 (1956)
++++|+..|+++++++|+++.+|+.+|.++..+|++.+|+ ..+.+++.+.+...
T Consensus 92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~-~~~~~al~l~p~n~ 145 (169)
T d1ihga1 92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL-ADLKKAQEIAPEDK 145 (169)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCH
T ss_pred ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHH-HHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999998888 88899999887763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.05 E-value=8.7e-10 Score=114.40 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
..++.++|.+|..+|++++|+..++++++++|.+..+|+.+|.++..+|++++|+.+|+++++++|++..+...++.+..
T Consensus 67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HcC
Q psy8682 1843 HLG 1845 (1956)
Q Consensus 1843 klG 1845 (1956)
+++
T Consensus 147 kl~ 149 (153)
T d2fbna1 147 KLK 149 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2e-10 Score=115.97 Aligned_cols=109 Identities=9% Similarity=-0.021 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCCCc--HHHHHHHHHHHH
Q psy8682 1768 GLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR---PEEAVEAYHTALQLSPGF--VRARYNLGITCV 1842 (1956)
Q Consensus 1768 ~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr---yeEAie~yeKALeL~Pdn--aeA~~~LA~ay~ 1842 (1956)
.++..+...+++++|++.|++++.++|.++.+++++|.++...++ +++|+..|++++..+|.. ..++++||.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 455566677777777777777777777777777777777776443 445777777777776654 347777888888
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.+|++++|+.+|+++++++|++..+...++.+..
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 8888888888888888888887777766655443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.5e-09 Score=109.33 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH-------HHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV-------RARYNL 1837 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna-------eA~~~L 1837 (1956)
.+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|.+. .++..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666666666666666666666666655432 355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
|.++..++++++|+.+|++++..+++
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 77777777777777777777777664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.96 E-value=3.6e-10 Score=116.82 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=59.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
+.+.+.+++|+..|+++++++|++ +.+++++|.++...+++..+.+ ..+.+++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~---~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~ 59 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLD---ADNLTRWGGVLLELSQFHSISD------------------------AKQMIQE 59 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcc---hHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHH
Confidence 445555566666666666666665 5566666655553322211100 1122344
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLG-----------ANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klG-----------dyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
|+..|++|++++|+++.+++++|.+|..+| .+++|+++|+++++++|++..++..++.....
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka 132 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 132 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence 555555555555555555555555554443 24566666666666666666666666554433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.2e-09 Score=110.10 Aligned_cols=112 Identities=12% Similarity=-0.022 Sum_probs=100.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD---EYDKAVDCFRSALQVRPDD--SRLWNRLG 1804 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG---dyeEAie~fekALel~Pdn--aeA~~nLG 1804 (1956)
.+++..+...+++++|.+.|++++.++|.+ +.+++++|.++...+ ++++|+..|++++..+|.. ..+++++|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~---~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 356788899999999999999999999999 999999999998755 4567999999999988765 45899999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.+|..+|++++|+.+|+++++++|++..+...++.+..++
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888776554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.94 E-value=8.6e-10 Score=113.94 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
|..+.++.++|.++...+++..+.+ ..+.+++|+..|+++++++|+++.++++
T Consensus 28 P~~~~~~~~~g~~l~~~~~~~~~~e---------------------------~~~~~~~Ai~~~~kAl~l~P~~~~a~~~ 80 (145)
T d1zu2a1 28 PLDADNLTRWGGVLLELSQFHSISD---------------------------AKQMIQEAITKFEEALLIDPKKDEAVWC 80 (145)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCHHH---------------------------HHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhhhhhhhH---------------------------HHHHHHHHHHHHHHHHHhcchhhHHHhh
Confidence 7788889999998876544432211 1122334555555555555555555555
Q ss_pred HHHHHHHCC-----------ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1803 LGASLANGN-----------RPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1803 LG~ay~qlG-----------ryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
+|.+|..+| .+++|+++|+++++++|++..++..|+.+....
T Consensus 81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 555544433 357788888888888888888777777765433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=7.1e-09 Score=104.27 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------H
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS-------R 1798 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna-------e 1798 (1956)
+..+.++|..++..|+|++|+.+|.++++++|.+ +.++.++|.+|..+|+|++|+..+++++.++|.+. .
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~ 80 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4567789999999999999999999999999999 99999999999999999999999999999987654 5
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHH
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~ 1836 (1956)
++..+|.++..++++++|+.+|++++..+++ ......
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 117 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK 117 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHH
Confidence 7778889999999999999999999998775 344433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.72 E-value=1.2e-08 Score=105.71 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=69.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--------
Q psy8682 1770 GVLFNLSDEYDKAVDCFRSALQVRPDD------------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG-------- 1829 (1956)
Q Consensus 1770 G~ly~~lGdyeEAie~fekALel~Pdn------------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd-------- 1829 (1956)
|..++..|+|++|+..|++++++.|+. +.+|.++|.+|..+|++++|+..+++++.+.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 444445555555555555555544432 345677777777777777777777777765321
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1830 ---FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1830 ---naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
...+++++|.+|..+|++++|+..|++|+++.|+.....
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~ 137 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 137 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence 234788999999999999999999999999988765543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=8.2e-08 Score=91.83 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-------AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEAL 1676 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn-------aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl 1676 (1956)
+++.++.+|.++++.|+|++|+..|++|+++.|.+ +.++.++|.++...|++++|+.+|+++++++|++..++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 57789999999999999999999999999886543 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8682 1677 MAISICFTN 1685 (1956)
Q Consensus 1677 ~~LA~aY~~ 1685 (1956)
.+++.+...
T Consensus 84 ~Nl~~~~~~ 92 (95)
T d1tjca_ 84 GNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.1e-07 Score=90.92 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD-------DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd-------naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
++-.+.+|.++...|+|++|+.+|++|+++.|. ...++.++|.++.++|++++|+.+|+++++++|++..++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 344555666666666666666666666655332 1345555555555555555555555555555555555555
Q ss_pred HHHHHH
Q psy8682 1836 NLGITC 1841 (1956)
Q Consensus 1836 ~LA~ay 1841 (1956)
+++.+.
T Consensus 85 Nl~~~~ 90 (95)
T d1tjca_ 85 NLKYFE 90 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.55 E-value=1.8e-07 Score=96.51 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=88.4
Q ss_pred hhHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHhCCCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1724 RLANHTLTF--RSPLSSREIHQQVLSLYLNAARQCPSQSI---------DPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1724 e~a~a~lnL--A~ay~~lGdyeEAle~LekALel~P~n~~---------~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
+.+.++..+ |..++..|+|++|+..|++++++.|.... .+.++.++|.+|..+|++++|+..+++++.+
T Consensus 5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~ 84 (156)
T d2hr2a1 5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 84 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence 344555554 77888999999999999999999887511 2467899999999999999999999999987
Q ss_pred CCC-----------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1793 RPD-----------DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1793 ~Pd-----------naeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
.|. ...+++++|.+|..+|++++|+..|++++++.|.
T Consensus 85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 432 2357899999999999999999999999998553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.51 E-value=5.8e-08 Score=110.00 Aligned_cols=137 Identities=12% Similarity=0.065 Sum_probs=119.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
.-.+..|++++|+..|+++++.+|.+ ..++..+|.+|+..|++++|+..|+++++++|++..++..++.++...+..
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d---~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKD---ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence 45677899999999999999999999 999999999999999999999999999999999999999999998877777
Q ss_pred HHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1814 EEAVEAYHTALQL-SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1814 eEAie~yeKALeL-~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
+++...+.+.... .|.....+...+.++...|++++|...++++.++.|..+..+...+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~~f 141 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSF 141 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEEE
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccccCH
Confidence 6665554443332 45566778888999999999999999999999999999887776554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.32 E-value=5.6e-07 Score=101.78 Aligned_cols=130 Identities=16% Similarity=0.073 Sum_probs=99.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1612 G~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
+..++..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999888766555444
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
+...+.+.... . .+.....+...+..+...|++++|...+.++.+..|..
T Consensus 83 a~~~~~~~~~~----~--------------~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 83 FAQGAATAKVL----G--------------ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp HTTSCCCEECC----C--------------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhhhhhcc----c--------------CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 33221111111 0 12233445556777777888888888888888777765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.24 E-value=1.3e-06 Score=93.06 Aligned_cols=120 Identities=8% Similarity=-0.109 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
....+...|......|++++|...|.+++.+.+.. ..... ..+.+ .......+.+....++..++
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~---~l~~~-------~~~~w-----~~~~r~~l~~~~~~a~~~la 74 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGP---VLDDL-------RDFQF-----VEPFATALVEDKVLAHTAKA 74 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS---TTGGG-------TTSTT-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc---ccccC-------cchHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999999999998876 11100 00111 11122223344467888999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
.++..+|++++|+.+++++++.+|.+..+|..++.+|..+|++.+|+..|+++..
T Consensus 75 ~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 75 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998844
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.06 E-value=1.7e-05 Score=84.22 Aligned_cols=99 Identities=13% Similarity=0.015 Sum_probs=90.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----------------------AEVWLSLGISLAENEQDPQAIAA 1661 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn----------------------aeAl~~LA~ay~~lGdyeEALe~ 1661 (1956)
..+.++..|..+...|++++|+..|.+++.+.++. ..++..++.++...|++++|+.+
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~ 89 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 89 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence 34688899999999999999999999999987643 25788999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1662 LSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1662 yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
++++++.+|.+..+|..++.+|...|++.+|+..|+++...
T Consensus 90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~ 130 (179)
T d2ff4a2 90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 130 (179)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.36 E-value=0.0011 Score=65.81 Aligned_cols=112 Identities=18% Similarity=0.095 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEE 1815 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeE 1815 (1956)
.++++|+.+|+++.+... +.+.+.+|. ....++++|+.+|+++.+. .++.+.+.||.+|.. ..++++
T Consensus 7 kd~~~A~~~~~kaa~~g~-----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE-----MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC-----TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCC-----hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHH
Confidence 378899999999998753 345666664 3467899999999999874 688999999999986 567899
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekALeLdP 1862 (1956)
|+.+|+++.+. .++.+.+.||.+|.. ..++++|+.+|++|.++..
T Consensus 78 A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999999875 578899999999987 5689999999999988643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.04 E-value=0.0025 Score=63.28 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=12.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
++++|+.+|+++.+. .++.+.+.||.+|.
T Consensus 38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYE 66 (133)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcc--cchhhhhhHHHhhh
Confidence 344444444444332 23444444444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.02 E-value=0.0012 Score=66.09 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQG---DLPSAILYLEAAAKQEPDNA-EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1604 daeall~LG~aylk~G---dydEAIe~fekALeldPdna-eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
..++.|..|.++.+.. +.++|+.+|+.+++.+|.+. +++++||..|+++|+|++|+.+++++|+++|++..+....
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 5789999999999775 56799999999999998764 8999999999999999999999999999999999887655
Q ss_pred HHH
Q psy8682 1680 SIC 1682 (1956)
Q Consensus 1680 A~a 1682 (1956)
-.+
T Consensus 114 ~~I 116 (124)
T d2pqrb1 114 SMV 116 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.00087 Score=67.19 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1797 SRLWNRLGASLANGNR---PEEAVEAYHTALQLSPGFV-RARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1797 aeA~~nLG~ay~qlGr---yeEAie~yeKALeL~Pdna-eA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
..+.+++|.++.+..+ .++|+.+++.++..+|.+. +++++||.+|.++|+|++|..+++++|+++|++..+...
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 4566666666665433 3466677777766666543 566777777777777777777777777777776665443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=5 Score=46.36 Aligned_cols=271 Identities=8% Similarity=-0.022 Sum_probs=165.1
Q ss_pred hHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHHcC
Q psy8682 1592 HEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------------------AEVWLSLGISLAENE 1653 (1956)
Q Consensus 1592 KAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn------------------aeAl~~LA~ay~~lG 1653 (1956)
..+.+.+..|. +.+..+..+.++...|+.++|...+..+....... ...+......+...|
T Consensus 90 ~~~~~~~~~p~-~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~ 168 (450)
T d1qsaa1 90 GLLAFSPEKPG-TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG 168 (450)
T ss_dssp HHHHHCCSCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 34444566666 67777888889999999999998887776543222 223334444555566
Q ss_pred ChHHHHHHHHHH-------------HHhCCC-----------CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q psy8682 1654 QDPQAIAALSKC-------------LSIEPK-----------NLEA--LMAISICFTNEACLHDALDTLKDKIRPGQESN 1707 (1956)
Q Consensus 1654 dyeEALe~yeKA-------------LeLdPd-----------naeA--l~~LA~aY~~lGdydEALe~leKALelg~e~d 1707 (1956)
++..|...+..+ +...|. .... ....+..-....+.+.|...+...... .
T Consensus 169 ~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~----~ 244 (450)
T d1qsaa1 169 NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQA----Q 244 (450)
T ss_dssp CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----T
T ss_pred ChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhc----c
Confidence 666555444311 111221 1111 112222233345666666666665443 1
Q ss_pred CCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1708 PRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787 (1956)
Q Consensus 1708 Pd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fe 1787 (1956)
+. . ..........++..+...+..+.|...+........+. ......++ .....+++..+...+.
T Consensus 245 ~~-------~----~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~w~~~-~al~~~~~~~~~~~~~ 309 (450)
T d1qsaa1 245 QL-------N----EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST---SLIERRVR-MALGTGDRRGLNTWLA 309 (450)
T ss_dssp TC-------C----HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH---HHHHHHHH-HHHHHTCHHHHHHHHH
T ss_pred cc-------c----HHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch---HHHHHHHH-HHHHcCChHHHHHHHH
Confidence 11 0 01122223334455556677788888777776554443 33333333 4456788988888877
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--------------------------c---HHHHHHHH
Q psy8682 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG--------------------------F---VRARYNLG 1838 (1956)
Q Consensus 1788 kALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd--------------------------n---aeA~~~LA 1838 (1956)
..-......+...+-+|.++...|+.++|...|..+... ++ . ...-...+
T Consensus 310 ~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra 388 (450)
T d1qsaa1 310 RLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARV 388 (450)
T ss_dssp HSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHH
T ss_pred hcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHH
Confidence 653333345778899999999999999999999987542 11 0 11234567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
..+..+|+...|...+..++.. .++.-...++.+....|.+..+|
T Consensus 389 ~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI 433 (450)
T d1qsaa1 389 RELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSV 433 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHH
Confidence 8889999999999998887653 34566777888888899988888
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.21 E-value=1.7 Score=50.56 Aligned_cols=238 Identities=11% Similarity=-0.022 Sum_probs=142.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------
Q psy8682 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN------------------ 1672 (1956)
Q Consensus 1611 LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn------------------ 1672 (1956)
--..+...+++...+..| ...|.+...-..++.++...|+..+|...+..+-......
T Consensus 78 ~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCC
Confidence 344566777877655544 3467888888899999999999999988877665443222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCCCCC-chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCH
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRP---------GQESNPR-PSAYKADALPSKLTRLANHTLTFRSPLSSREIH 1742 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALel---------g~e~dPd-~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdy 1742 (1956)
...+...+......|++..|...+..+-.. ....+|. .......... ..........+..-....+.
T Consensus 154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~---~~~~~~~~~~~l~rla~~d~ 230 (450)
T d1qsaa1 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGA---TDFTRQMAAVAFASVARQDA 230 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCC---CHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCC---ChhhhHHHHHHHHHHhccCh
Confidence 222334455556667777666554321100 0000111 0000000000 01111122334444455688
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q psy8682 1743 QQVLSLYLNAARQCPSQSIDPDVQNGLG----VLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1743 eEAle~LekALel~P~n~~~a~a~~~LG----~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie 1818 (1956)
+.|...+.......+.. ...+.... ..+...+..+.|...+........+.......++. ....+++..+..
T Consensus 231 ~~a~~~l~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~ 306 (450)
T d1qsaa1 231 ENARLMIPSLAQAQQLN---EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNT 306 (450)
T ss_dssp HHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHH
T ss_pred hHHHHHHHhhhhccccc---HHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHH
Confidence 88998888877766554 33332222 22234566788888887777665554444444454 455689998888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1819 AYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1819 ~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
.+...-..........|.+|.++..+|+.++|..+|..+..
T Consensus 307 ~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 88765332233467889999999999999999999998865
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.58 E-value=2.1 Score=48.65 Aligned_cols=213 Identities=10% Similarity=0.035 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
..-..|..+.+.|.|+.|..+|...- -+..+..++...++++.|.+.+.++ ++...|..+...+...
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 82 (336)
T ss_dssp -------------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhC
Confidence 34567778888888888888887531 2445567777888888888887765 4566777777777766
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
....-|.. +.. +. ...+.....+...|...|.+++.+.++..++...+.+ ...+
T Consensus 83 ~e~~la~i-----~~~-----~~-------------~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~---~~~~ 136 (336)
T d1b89a_ 83 KEFRLAQM-----CGL-----HI-------------VVHADELEELINYYQDRGYFEELITMLEAALGLERAH---MGMF 136 (336)
T ss_dssp TCHHHHHH-----TTT-----TT-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC---HHHH
T ss_pred cHHHHHHH-----HHH-----Hh-------------hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccc---hHHH
Confidence 65544321 111 00 0011122335567778888899988888888776666 7778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HHhCCC-------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSA-LQVRPD-------DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekA-Lel~Pd-------naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
..++.+|.+.+ .++-.+.++.. ...++. ....|-.+..+|.+.|++++|+...-. .|.+..-....-
T Consensus 137 ~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~----~~~~~~~~~~f~ 211 (336)
T d1b89a_ 137 TELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN----HPTDAWKEGQFK 211 (336)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH----STTTTCCHHHHH
T ss_pred HHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH----cchhhhhHHHHH
Confidence 88888776643 34444444332 111111 112244566677777777777655433 122111123333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.++.+..+.+...+.....++.+|+
T Consensus 212 e~~~k~~N~e~~~~~i~~yL~~~p~ 236 (336)
T d1b89a_ 212 DIITKVANVELYYRAIQFYLEFKPL 236 (336)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHccCChHHHHHHHHHHHHcCHH
Confidence 4455556655555555555555554
|