Psyllid ID: psy8684

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MEPNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEATF
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccEEEEEEccccccccEEEcccccEEEEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcccccEEEEEcccccEEEEcEEEEcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEEccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEccccEEEEEEccEEEEEEcccEEEccEEEEcccccEEEEEccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccEEEEEEEEEcccEEEEEEEccccccEEEcEEEEcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHEccccccEEEEEEEcccEEEEEcccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mepnlpdisagtevtcgTTTIAceyengvmmgadtrttlgTYVCNreaekltkisdniyccrsgtaadtQAISDLVSYHIDldvaygyremnepplvYRAANLFQKIFRSNEGSFKAAIIIAGWdtvkggqvyalpasgvltrqncavggsgssyILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAsgglinigvlengkpmekLVFTQEEVQHFFNHEATF
Flexible Loop (DISEMBL)
mepnlpdisagtevtcGTTTIACEYENGVMMGADTRTTLGTYVCNREaekltkisdniYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTrqncavggsgsSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEATF
Low Complexity Region (SEG)
MEPNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEATF
Disordered region (IsUnstruct)
**********GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF******
Disordered Region (DISOPRED)
*************VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGY**MNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF*N*****
Disordered Region (DISEMBL)
MEPNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEATF
Disordered Region (DISPRO)
*****PDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEATF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q60692	238	Proteasome subunit beta t	yes	N/A	0.893	0.848	0.473	2e-52
P28072	239	Proteasome subunit beta t	yes	N/A	0.889	0.841	0.480	2e-52
P28073	238	Proteasome subunit beta t	yes	N/A	0.880	0.836	0.475	3e-52
Q3MHN0	239	Proteasome subunit beta t	yes	N/A	0.889	0.841	0.480	4e-52
Q55GJ6	214	Proteasome subunit beta t	yes	N/A	0.853	0.901	0.461	1e-46
P38624	215	Proteasome subunit beta t	yes	N/A	0.889	0.934	0.429	8e-45
O43063	226	Probable proteasome subun	yes	N/A	0.853	0.853	0.43	4e-44
Q8LD27	233	Proteasome subunit beta t	yes	N/A	0.915	0.888	0.387	6e-43
Q3SZC2	219	Proteasome subunit beta t	no	N/A	0.924	0.954	0.409	3e-41
Q8UW64	217	Proteasome subunit beta t	N/A	N/A	0.902	0.940	0.423	2e-40

>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/207 (47%), Positives = 142/207 (68%), Gaps = 5/207 (2%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV+ GTT +A ++  GV++GAD+RTT G+Y+ NR  +KLT I D+I+CCRSG+AADTQA+
Sbjct: 29  EVSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAV 88

Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +D V+Y +     +   E+NEPPLV+ AA+LF+++         A IIIAGWD  +GGQV
Sbjct: 89  ADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQV 144

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y++P  G++ RQ+ A+GGSGSSYI GYVD  +R  M K EC+ F    L+LAM RD +SG
Sbjct: 145 YSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 204

Query: 193 GLINIGVLENGKPMEKLVFTQEEVQHF 219
           G+I +  ++    +E+ V   +++  F
Sbjct: 205 GVIRLAAIQESG-VERQVLLGDQIPKF 230

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. May catalyze basal processing of intracellular antigens.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1

>sp|P28072|PSB6_HUMAN Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/208 (48%), Positives = 145/208 (69%), Gaps = 7/208 (3%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV+ GTT +A +++ GV++GAD+RTT G+Y+ NR  +KLT I D I+CCRSG+AADTQA+
Sbjct: 30  EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89

Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +D V+Y +     +   E+NEPPLV+ AA+LF+++         A IIIAGWD  +GGQV
Sbjct: 90  ADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQV 145

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y++P  G++ RQ+ A+GGSGSSYI GYVD  +R  M K+EC+ F    L+LAM RD +SG
Sbjct: 146 YSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205

Query: 193 GLINIGVL-ENGKPMEKLVFTQEEVQHF 219
           G+I +  + E+G  +E+ V   +++  F
Sbjct: 206 GVIRLAAIAESG--VERQVLLGDQIPKF 231

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This unit is responsible of the peptidyl glutamyl-like activity. May catalyze basal processing of intracellular antigens.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P28073|PSB6_RAT Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 142/204 (69%), Gaps = 5/204 (2%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV+ GTT +A +++ GV++GAD+RTT G+Y+ NR  +KLT I D+I+CCRSG+AADTQA+
Sbjct: 29  EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAV 88

Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +D V+Y +     +   E+NEPPLV+ AA+LF+++         A IIIAGWD  +GGQV
Sbjct: 89  ADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQV 144

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y++P  G++ RQ+ A+GGSGSSYI GYVD  +R  M K EC+ F    L+LAM RD +SG
Sbjct: 145 YSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 204

Query: 193 GLINIGVLENGKPMEKLVFTQEEV 216
           G+I +  ++    +E+ V   +++
Sbjct: 205 GVIRLAAIQQSG-VERQVLLGDQI 227

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q3MHN0|PSB6_BOVIN Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1

 Score =  204 bits (519), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 100/208 (48%), Positives = 143/208 (68%), Gaps = 7/208 (3%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV+ GTT +A +++ GV++GAD+RTT G+Y+ NR  +KLT I D I+CCRSG+AADTQA+
Sbjct: 30  EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89

Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +D V+Y +     +   E+NEPPLV+ AA+LF+++         A IIIAGWD  +GGQV
Sbjct: 90  ADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQV 145

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y++P  G++ RQ  A+GGSGSSYI GYVD  +R  M K+EC+ F    L+LAM RD +SG
Sbjct: 146 YSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205

Query: 193 GLINIGVL-ENGKPMEKLVFTQEEVQHF 219
           G+I +  + E G  +E+ V   +++  F
Sbjct: 206 GVIRLAAIAEPG--VERQVLLGDQIPKF 231

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. May catalyze basal processing of intracellular antigens.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q55GJ6|PSB6_DICDI Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 133/197 (67%), Gaps = 4/197 (2%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  GT+ +A EY+ GV+MGAD+RTT G Y+ NR   K+T I + IYCCRSG+AADTQAIS
Sbjct: 11  VDLGTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAIS 70

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVY 133
           D V Y++++  +    E+ + P V  AA+LFQ +  SN+ +  A II+AGWD  +GG VY
Sbjct: 71  DYVRYYLEMHTS----ELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVY 126

Query: 134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
            +   G + +Q  A+GGSGS+YI GY D +++  M K ECI+F++  L+LAM RD +SGG
Sbjct: 127 NISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGG 186

Query: 194 LINIGVLENGKPMEKLV 210
           +I + +++      K++
Sbjct: 187 VIRLCIIDKNGVERKMI 203

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P38624|PSB1_YEAST Proteasome subunit beta type-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRE3 PE=1 SV=2

 Score =  180 bits (456), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 136/207 (65%), Gaps = 6/207 (2%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV+ GT+ +A  +++GV++GAD+RTT G Y+ NR  +KLT++ D I+CCRSG+AADTQAI
Sbjct: 15  EVSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAI 74

Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +D+V YH++L     Y      P    AA++F+++   N+ +  A II+AG+D    G+V
Sbjct: 75  ADIVQYHLEL-----YTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 129

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y +P  G + +   A+ GSGS++I GY DK +R NM K+E +DFIK  LS A+  D +SG
Sbjct: 130 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 189

Query: 193 GLINIGVLENGKPMEKLVFTQEEVQHF 219
           G+I + VL     +E+L+F  +E +  
Sbjct: 190 GVIRMVVL-TAAGVERLIFYPDEYEQL 215

This subunit is necessary for the peptidylglutamyl-peptide hydrolyzing activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O43063|PSB1_SCHPO Probable proteasome subunit beta type-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pre3 PE=3 SV=1

 Score =  177 bits (450), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 133/200 (66%), Gaps = 7/200 (3%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           E+  GTT  A  Y++GV++ AD+RTT+G Y+ NR  +KLT+++DNI+CCRSG+AADTQ +
Sbjct: 20  EIRMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTV 79

Query: 73  SDLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQ 131
           +DL+ Y++ +     YR +    P V+ AA L  ++   N+    A +I+AG+D   GG 
Sbjct: 80  ADLLKYYLSM-----YRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGD 134

Query: 132 VYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAS 191
           VY++P  G L +Q  A+GGSGS++I G+ D  +R NM ++E ++F+K  ++LAM RD +S
Sbjct: 135 VYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSS 194

Query: 192 GGLINIGVLENGKPMEKLVF 211
           GG I + +L N   ME+  F
Sbjct: 195 GGTIRMVIL-NKDGMERKFF 213

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2

 Score =  174 bits (440), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/217 (38%), Positives = 131/217 (60%), Gaps = 10/217 (4%)

Query: 7   DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTA 66
           D++     + GTT I   Y  GV++GAD+RT+ G YV NR ++K+T+++DN+Y CRSG+A
Sbjct: 2   DLNLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSA 61

Query: 67  ADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDT 126
           AD+Q +SD V Y +         +  +P  V  +ANL + +  +N+   +  +I+ GWD 
Sbjct: 62  ADSQVVSDYVRYFLHQHTI----QHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDK 117

Query: 127 VKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMA 186
            +GG++Y +P  G +  Q  A+GGSGSSY+ G+ D+ W+ NM K+E    +   +SLA+A
Sbjct: 118 YEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIA 177

Query: 187 RDYASGGLINI------GVLENGKPMEKLVFTQEEVQ 217
           RD ASGG++        GV  N  P +KL    EE++
Sbjct: 178 RDGASGGVVRTVIINSEGVTRNFYPGDKLQLWHEELE 214

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q3SZC2|PSB9_BOVIN Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1

 Score =  168 bits (425), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 133/215 (61%), Gaps = 6/215 (2%)

Query: 7   DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTA 66
           D+    EV  GTT +A E++ GV++G+D+R + G  V NR  +KL+ +  +IYC  SG+A
Sbjct: 10  DLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSA 69

Query: 67  ADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDT 126
           AD QAI+D+ +Y ++L   +G  E+ EPPLV  AAN+ + I         A +++AGWD 
Sbjct: 70  ADAQAIADMAAYQLEL---HGM-ELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQ 125

Query: 127 VKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMA 186
            +GGQVY    SG+L RQ  A+GGSGS+YI GYVD  ++  M  +EC  F    ++LAM 
Sbjct: 126 REGGQVYGT-MSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMK 184

Query: 187 RDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221
           RD +SGG+I +  +  G  ++  V   +E+  F++
Sbjct: 185 RDGSSGGVIYLATI-TGAGVDHRVILGDELPRFYD 218

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q8UW64|PSB9_ORYLA Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1

 Score =  165 bits (418), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/210 (42%), Positives = 128/210 (60%), Gaps = 6/210 (2%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV  GTT IA E+  GV++G+D+R + G  V NR   KL+ + D IYC  SG+AAD Q I
Sbjct: 14  EVKTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTI 73

Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +++V+Y +D+       E++E P V  AA L + I    +    A +I+AGWD   GGQV
Sbjct: 74  AEMVNYQLDVHSL----EIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQV 129

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           +A    G+LTRQ  A+GGSGSSY+ G+VD E+R  M K+EC  F+   L+LAM RD +SG
Sbjct: 130 FA-TLGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSG 188

Query: 193 GLINIGVLENGKPMEKLVFTQEEVQHFFNH 222
           G+  I  ++     EK++    ++  FF+ 
Sbjct: 189 GVAYIVTIDEHSTDEKVILGN-DLPTFFDQ 217

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides.

Oryzias latipes (taxid: 8090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
380027365	232	PREDICTED: proteasome subunit beta type-	0.938	0.913	0.479	2e-53
307190437	229	Proteasome subunit beta type-6 [Camponot	0.942	0.930	0.479	2e-53
350425330	232	PREDICTED: proteasome subunit beta type-	0.951	0.926	0.449	5e-53
193716235	243	PREDICTED: proteasome subunit beta type-	0.955	0.888	0.443	8e-53
239788939	243	ACYPI009408 [Acyrthosiphon pisum]	0.955	0.888	0.443	9e-53
167521337	216	hypothetical protein [Monosiga brevicoll	0.946	0.990	0.481	1e-52
242014499	226	proteasome subunit beta type 6 precursor	0.920	0.920	0.493	5e-52
332030043	197	Proteasome subunit beta type-6 [Acromyrm	0.862	0.989	0.5	5e-52
410979655	239	PREDICTED: proteasome subunit beta type-	0.893	0.845	0.483	9e-52
405951012	218	Proteasome subunit beta type-6 [Crassost	0.924	0.958	0.469	1e-51

>gi|380027365|ref|XP_003697397.1| PREDICTED: proteasome subunit beta type-6-like [Apis florea]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 152/217 (70%), Gaps = 5/217 (2%)

Query: 4   NLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRS 63
           NL      +E + GT+ +ACE++ GV++GAD+R T G Y+ NR A+KLTKI+D IYCCRS
Sbjct: 19  NLVQDWVSSEQSTGTSIMACEFDGGVVIGADSRATTGAYISNRFADKLTKITDYIYCCRS 78

Query: 64  GTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAG 123
           G+AADTQAISD+V+YH+ L       E+   PLV  AAN+F+++  +   S  A I++AG
Sbjct: 79  GSAADTQAISDIVAYHLSLH----KMELGIEPLVETAANVFRELCYNYRDSLMAGILVAG 134

Query: 124 WDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSL 183
           WD+ KGGQVY++P  G+  RQ  ++GGSGS+Y+ GY+D +++ NM K EC+  ++  L+L
Sbjct: 135 WDSRKGGQVYSVPIGGMCVRQPISIGGSGSTYVYGYMDSQYKPNMSKNECVKLVENTLAL 194

Query: 184 AMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220
           AM+RD +SGG+I IGV+ N K +E+ V    E+  F+
Sbjct: 195 AMSRDGSSGGVIRIGVITN-KGIERKVILGNELPRFY 230

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190437|gb|EFN74473.1| Proteasome subunit beta type-6 [Camponotus floridanus]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 153/219 (69%), Gaps = 6/219 (2%)

Query: 2   EPNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCC 61
           E  +PD    +E + GT+ +ACE++ GV++GAD+R T G YV NR A+KLT+++D IYCC
Sbjct: 15  ENMMPDW-LNSEQSTGTSIMACEFDGGVVIGADSRGTTGAYVSNRYADKLTRVTDYIYCC 73

Query: 62  RSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIII 121
           RSG+AADTQAI+D+V+YH+ L       E+  PPLV  AAN+F++I  +   S  A I++
Sbjct: 74  RSGSAADTQAIADIVAYHLGLH----QMELGTPPLVETAANVFREICYNYRDSLMAGILV 129

Query: 122 AGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGL 181
           AGWD  KGGQVY++P  G+  RQ  ++GGSGS+Y+ GYVD ++++NM K EC+  ++  L
Sbjct: 130 AGWDKQKGGQVYSIPIGGMCVRQPISIGGSGSTYVYGYVDAQYKSNMPKDECLKLVENTL 189

Query: 182 SLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220
           +LAMARD +SGG+I  GV+   K +E+ V    E+  F+
Sbjct: 190 ALAMARDGSSGGVIRTGVITE-KGIERKVILGNELPRFY 227

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425330|ref|XP_003494087.1| PREDICTED: proteasome subunit beta type-6-like [Bombus impatiens]

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 157/227 (69%), Gaps = 12/227 (5%)

Query: 1   MEPNLPDISA-------GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTK 53
           ++PN+  +++        +E + GT+ +ACE++ GV++GAD+R T G Y+ NR A+KLTK
Sbjct: 9   VQPNISSVASNLGPDWLSSEQSTGTSIMACEFDGGVVIGADSRATTGAYISNRFADKLTK 68

Query: 54  ISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG 113
           I+D+IYCCRSG+AADTQAISD+V+YH+ L       E+   PLV  AAN+F+++  +   
Sbjct: 69  ITDHIYCCRSGSAADTQAISDIVAYHLSLH----KMELGMEPLVETAANVFRELCYNYRD 124

Query: 114 SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC 173
           S  A I++AGWD+ KGGQVY++P  G+  RQ  ++GGSGS+Y+ GY+D +++ NM + EC
Sbjct: 125 SLMAGILVAGWDSRKGGQVYSIPLGGMCVRQPISIGGSGSTYVYGYMDAQYKPNMSRDEC 184

Query: 174 IDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220
           +  ++  L+LAM+RD +SGG+I IGV+   K  E+ V    E+  F+
Sbjct: 185 VKLVENTLALAMSRDGSSGGVIRIGVITE-KGAERKVILGNELPRFY 230

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193716235|ref|XP_001951926.1| PREDICTED: proteasome subunit beta type-6-like [Acyrthosiphon pisum]

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/221 (44%), Positives = 156/221 (70%), Gaps = 5/221 (2%)

Query: 2   EPNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCC 61
           + ++ DI+   EVT GTT IA  Y+ GV++GAD+RTT G Y+ NR  +KLTK+ DNIYCC
Sbjct: 11  DGDIHDITK-DEVTTGTTIIAAIYDGGVIIGADSRTTTGAYIANRVTDKLTKVCDNIYCC 69

Query: 62  RSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIII 121
           RSG+AADTQAI+D+V+Y++DL       +M+EPPLV  AAN+F+ +   N     A +I+
Sbjct: 70  RSGSAADTQAITDIVAYYMDLTSI----QMDEPPLVRAAANVFKNLIYENRHQLTAGVIV 125

Query: 122 AGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGL 181
           AGWD+  GGQVY++  SG + +QN ++GGSGSSY+ G++D +++  M +QEC + +   +
Sbjct: 126 AGWDSRFGGQVYSINVSGTIVQQNISIGGSGSSYLYGFMDSQYKDGMTQQECENLVLNAI 185

Query: 182 SLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNH 222
           SLA+ RD +SGG++ +GV+ +   +++ +   +++  F+++
Sbjct: 186 SLAIKRDGSSGGVVRMGVINHTGQIQRKLTLGDQLPKFYDN 226

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239788939|dbj|BAH71121.1| ACYPI009408 [Acyrthosiphon pisum]

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 98/221 (44%), Positives = 156/221 (70%), Gaps = 5/221 (2%)

Query: 2   EPNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCC 61
           + ++ DI+   EVT GTT IA  Y+ GV++GAD+RTT G Y+ NR  +KLTK+ DNIYCC
Sbjct: 11  DGDIHDITK-DEVTTGTTIIAAIYDGGVIIGADSRTTTGAYIANRVTDKLTKVCDNIYCC 69

Query: 62  RSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIII 121
           RSG+AADTQAI+D+V+Y++DL       +M+EPPLV  AAN+F+ +   N     A +I+
Sbjct: 70  RSGSAADTQAITDIVAYYMDLTSI----QMDEPPLVRAAANVFKNLIYENRHQLTAGVIV 125

Query: 122 AGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGL 181
           AGWD+  GGQVY++  SG + +QN ++GGSGSSY+ G++D +++  M +QEC + +   +
Sbjct: 126 AGWDSRFGGQVYSINVSGTIVQQNISIGGSGSSYLYGFMDSQYKDGMTQQECENLVLNAI 185

Query: 182 SLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNH 222
           SLA+ RD +SGG++ +GV+ +   +++ +   +++  F+++
Sbjct: 186 SLAIKRDGSSGGVVRMGVINHTGQIQRKLTLGDQLPKFYDN 226

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167521337|ref|XP_001745007.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776621|gb|EDQ90240.1| predicted protein [Monosiga brevicollis MX1]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/220 (48%), Positives = 150/220 (68%), Gaps = 6/220 (2%)

Query: 1   MEPNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYC 60
           MEP  PD      +T GTT +A E+ +GV++GAD+RTT G+YV NR  +KLTKI+DNIYC
Sbjct: 1   MEPAQPDWVTAEHLT-GTTIMAVEFADGVVIGADSRTTTGSYVANRVTDKLTKITDNIYC 59

Query: 61  CRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAII 120
           CRSG+AADTQAI+D+V Y++DL       EM+E P V+ AA++F+    +N  S  A II
Sbjct: 60  CRSGSAADTQAIADIVRYYLDLHSM----EMDEDPEVHTAASVFRTFCYNNRESLMAGII 115

Query: 121 IAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMG 180
            AGWD  KGGQVY++P  G+L RQ  ++GGSGS+++ G+ D  ++ NM K EC+ F++  
Sbjct: 116 CAGWDKKKGGQVYSIPLGGLLVRQPFSIGGSGSTFLYGHCDASYKENMTKDECLKFVRTA 175

Query: 181 LSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220
           L+LAM+RD +SGG+I   V+     +E+ V    E+  F+
Sbjct: 176 LALAMSRDGSSGGVIRTAVITEAG-VEREVVLGNELPTFY 214

Source: Monosiga brevicollis MX1

Species: Monosiga brevicollis

Genus: Monosiga

Family: Codonosigidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|242014499|ref|XP_002427927.1| proteasome subunit beta type 6 precursor, putative [Pediculus humanus corporis] gi|212512411|gb|EEB15189.1| proteasome subunit beta type 6 precursor, putative [Pediculus humanus corporis]

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 150/217 (69%), Gaps = 9/217 (4%)

Query: 5   LPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSG 64
           LPD     E T GTT +A EY+ GV++G D+RTT G YV NR  +KLTKI+D IYCCRSG
Sbjct: 16  LPDWMQ--EETTGTTIMAVEYDGGVVIGGDSRTTTGGYVANRFTDKLTKITDRIYCCRSG 73

Query: 65  TAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGW 124
           +AADTQAI+D+V YH++L       E+    LV  AAN+F++I  S   S  A II+AG+
Sbjct: 74  SAADTQAIADIVEYHMNLQNI----ELGSESLVSTAANVFKEICYSYRDSLTAGIIVAGY 129

Query: 125 DTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
           D++ GGQVY +P  G+L RQN A GGSGS+Y+ GYVD  ++ NM K+E ++F+   ++LA
Sbjct: 130 DSLYGGQVYCIPIGGMLQRQNVATGGSGSTYVYGYVDSHYKPNMSKEESVNFVTNTVALA 189

Query: 185 MARDYASGGLINIGVL-ENGKPMEKLVFTQEEVQHFF 220
           M RD +SGG+I +G++ ENG  +E+ +   E++  F+
Sbjct: 190 MMRDSSSGGVIRLGIIDENG--IERRLIKGEDIPKFY 224

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030043|gb|EGI69868.1| Proteasome subunit beta type-6 [Acromyrmex echinatior]

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 100/200 (50%), Positives = 144/200 (72%), Gaps = 5/200 (2%)

Query: 21  IACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHI 80
           +ACE+ +GV++GAD+R T GTYV NR A+KLT+++D IYCCRSG+AADTQAI+D+V+YH+
Sbjct: 1   MACEFNDGVVIGADSRGTTGTYVSNRFADKLTRVTDYIYCCRSGSAADTQAIADIVAYHL 60

Query: 81  DLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGV 140
            L       E+  PPLV  AAN+F++I  +   S  A I++AGWD  KGGQVY++P  G+
Sbjct: 61  GLH----QMELGTPPLVETAANVFREICYNYRDSLMAGILVAGWDKQKGGQVYSIPIGGM 116

Query: 141 LTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL 200
             RQ  ++GGSGS+Y+ GYVD ++++NM K EC+  ++  L+LAMARD +SGG+I  GV+
Sbjct: 117 CVRQPISIGGSGSTYVYGYVDAQYKSNMSKDECLGLVENTLALAMARDGSSGGVIRTGVI 176

Query: 201 ENGKPMEKLVFTQEEVQHFF 220
              K +E+ V    E+  F+
Sbjct: 177 TE-KGIERKVILGNELPRFY 195

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410979655|ref|XP_003996197.1| PREDICTED: proteasome subunit beta type-6 isoform 1 [Felis catus]

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 100/207 (48%), Positives = 143/207 (69%), Gaps = 5/207 (2%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV+ GTT +A ++E GV++GAD+RTT G+Y+ NR  +KLT I D I+CCRSG+AADTQA+
Sbjct: 30  EVSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89

Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +D V+Y +     +   E+NEPPLV+ AA+LF+++         A IIIAGWD  +GGQV
Sbjct: 90  ADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQV 145

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y++P  G++ RQ+ A+GGSGSSYI GYVD  +R  M K+EC+ F    L+LAM RD +SG
Sbjct: 146 YSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 205

Query: 193 GLINIGVLENGKPMEKLVFTQEEVQHF 219
           G+I +  +E    +E+ V   +++  F
Sbjct: 206 GVIRLAAIEESG-VERRVLLGDQIPKF 231

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405951012|gb|EKC18961.1| Proteasome subunit beta type-6 [Crassostrea gigas]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 146/215 (67%), Gaps = 6/215 (2%)

Query: 6   PDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGT 65
           PD ++    T GTT +A EY+ GV++GAD+RTT G Y+ NR  +KLTKI+D IYCCRSG+
Sbjct: 7   PDWTSAEHET-GTTIMAVEYDGGVVIGADSRTTTGAYIANRVTDKLTKITDKIYCCRSGS 65

Query: 66  AADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWD 125
           AADTQA++D+VSYH++        +M E P V  AAN+F+++  +N  +  A II+ GWD
Sbjct: 66  AADTQAVADIVSYHLNFQ----KMDMGEEPKVKVAANIFRELCYNNRDNLSAGIIVGGWD 121

Query: 126 TVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM 185
             +GGQVYA+P  G+LTR     GGSGS+YI GYVD  ++  M K+EC+ F+  G+ LA+
Sbjct: 122 KTEGGQVYAIPLGGMLTRMPFTTGGSGSTYIYGYVDANFKTGMTKEECLKFVANGVGLAI 181

Query: 186 ARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220
           +RD +SGG++ +  + N   +E+ V T  +V  F+
Sbjct: 182 SRDGSSGGVVRLAAI-NKDGVERFVLTGNQVPTFY 215

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
UNIPROTKB|E2R0B6	239	PSMB6 "Proteasome subunit beta	0.911	0.861	0.486	5.8e-50
UNIPROTKB|P28072	239	PSMB6 "Proteasome subunit beta	0.911	0.861	0.481	1.2e-49
MGI|MGI:104880	238	Psmb6 "proteasome (prosome, ma	0.884	0.840	0.488	3.2e-49
UNIPROTKB|F1RFV5	241	PSMB6 "Proteasome subunit beta	0.884	0.829	0.483	4.1e-49
UNIPROTKB|Q3MHN0	239	PSMB6 "Proteasome subunit beta	0.884	0.836	0.488	6.7e-49
RGD|61881	238	Psmb6 "proteasome (prosome, ma	0.876	0.831	0.482	6.7e-49
ZFIN|ZDB-GENE-990415-216	232	psmb6 "proteasome (prosome, ma	0.867	0.844	0.497	6e-48
FB|FBgn0010590	224	Prosbeta1 "Proteasome beta1 su	0.902	0.910	0.448	2e-47
DICTYBASE|DDB_G0267390	214	psmB6 "proteasome subunit beta	0.853	0.901	0.461	3.4e-45
ASPGD|ASPL0000017034	233	AN3756 [Emericella nidulans (t	0.827	0.802	0.473	5e-44

UNIPROTKB|E2R0B6 PSMB6 "Proteasome subunit beta type" [Canis lupus familiaris (taxid:9615)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 105/216 (48%), Positives = 151/216 (69%)

Query:     6 PDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGT 65
             PD  +  EV+ GTT +A ++E GV++GAD+RTT G+Y+ NR  +KLT I D I+CCRSG+
Sbjct:    24 PDWES-REVSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGS 82

Query:    66 AADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKI-FRSNEGSFKAAIIIAGW 124
             AADTQA++D V+Y +     +   E+NEPPLV+ AA+LF+++ +R  E    A IIIAGW
Sbjct:    83 AADTQAVADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGW 137

Query:   125 DTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
             D  +GGQVY++P  G++ RQ+ A+GGSGSSYI GYVD  +R  M K+EC+ F    L+LA
Sbjct:   138 DPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALA 197

Query:   185 MARDYASGGLINIGVL-ENGKPMEKLVFTQEEVQHF 219
             M RD +SGG+I +  + E+G  +E+ V   +++  F
Sbjct:   198 MERDGSSGGVIRLAAIAESG--VERQVLLGDQIPKF 231

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P28072 PSMB6 "Proteasome subunit beta type-6" [Homo sapiens (taxid:9606)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 104/216 (48%), Positives = 151/216 (69%)

Query:     6 PDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGT 65
             PD  +  EV+ GTT +A +++ GV++GAD+RTT G+Y+ NR  +KLT I D I+CCRSG+
Sbjct:    24 PDWES-REVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGS 82

Query:    66 AADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKI-FRSNEGSFKAAIIIAGW 124
             AADTQA++D V+Y +     +   E+NEPPLV+ AA+LF+++ +R  E    A IIIAGW
Sbjct:    83 AADTQAVADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGW 137

Query:   125 DTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
             D  +GGQVY++P  G++ RQ+ A+GGSGSSYI GYVD  +R  M K+EC+ F    L+LA
Sbjct:   138 DPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALA 197

Query:   185 MARDYASGGLINIGVL-ENGKPMEKLVFTQEEVQHF 219
             M RD +SGG+I +  + E+G  +E+ V   +++  F
Sbjct:   198 MERDGSSGGVIRLAAIAESG--VERQVLLGDQIPKF 231

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISS;NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0004175 "endopeptidase activity" evidence=NAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

MGI|MGI:104880 Psmb6 "proteasome (prosome, macropain) subunit, beta type 6" [Mus musculus (taxid:10090)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 102/209 (48%), Positives = 147/209 (70%)

Query:    13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
             EV+ GTT +A ++  GV++GAD+RTT G+Y+ NR  +KLT I D+I+CCRSG+AADTQA+
Sbjct:    29 EVSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAV 88

Query:    73 SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKI-FRSNEGSFKAAIIIAGWDTVKGGQ 131
             +D V+Y +     +   E+NEPPLV+ AA+LF+++ +R  E    A IIIAGWD  +GGQ
Sbjct:    89 ADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQ 143

Query:   132 VYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAS 191
             VY++P  G++ RQ+ A+GGSGSSYI GYVD  +R  M K EC+ F    L+LAM RD +S
Sbjct:   144 VYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSS 203

Query:   192 GGLINIGVL-ENGKPMEKLVFTQEEVQHF 219
             GG+I +  + E+G  +E+ V   +++  F
Sbjct:   204 GGVIRLAAIQESG--VERQVLLGDQIPKF 230

GO:0000502 "proteasome complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|F1RFV5 PSMB6 "Proteasome subunit beta type" [Sus scrofa (taxid:9823)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 101/209 (48%), Positives = 147/209 (70%)

Query:    13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
             EV+ GTT +A +++ GV++GAD+RTT G+Y+ NR  +KLT I D I+CCRSG+AADTQA+
Sbjct:    32 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 91

Query:    73 SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKI-FRSNEGSFKAAIIIAGWDTVKGGQ 131
             +D V+Y +     +   E+NEPPLV+ AA+LF+++ +R  E    A II+AGWD  +GGQ
Sbjct:    92 ADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIVAGWDPQEGGQ 146

Query:   132 VYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAS 191
             VY++P  G++ RQ  A+GGSGSSYI GYVD  +R  M K+EC+ F    L+LAM RD +S
Sbjct:   147 VYSVPMGGMMVRQAFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSS 206

Query:   192 GGLINIGVL-ENGKPMEKLVFTQEEVQHF 219
             GG+I +  + E+G  +E+ V   +++  F
Sbjct:   207 GGVIRLAAIAESG--VERQVLLGDQIPKF 233

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|Q3MHN0 PSMB6 "Proteasome subunit beta type-6" [Bos taurus (taxid:9913)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 102/209 (48%), Positives = 146/209 (69%)

Query:    13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
             EV+ GTT +A +++ GV++GAD+RTT G+Y+ NR  +KLT I D I+CCRSG+AADTQA+
Sbjct:    30 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89

Query:    73 SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKI-FRSNEGSFKAAIIIAGWDTVKGGQ 131
             +D V+Y +     +   E+NEPPLV+ AA+LF+++ +R  E    A IIIAGWD  +GGQ
Sbjct:    90 ADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQ 144

Query:   132 VYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAS 191
             VY++P  G++ RQ  A+GGSGSSYI GYVD  +R  M K+EC+ F    L+LAM RD +S
Sbjct:   145 VYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSS 204

Query:   192 GGLINIGVL-ENGKPMEKLVFTQEEVQHF 219
             GG+I +  + E G  +E+ V   +++  F
Sbjct:   205 GGVIRLAAIAEPG--VERQVLLGDQIPKF 231

GO:0005839 "proteasome core complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

RGD|61881 Psmb6 "proteasome (prosome, macropain) subunit, beta type 6" [Rattus norvegicus (taxid:10116)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 99/205 (48%), Positives = 145/205 (70%)

Query:    13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
             EV+ GTT +A +++ GV++GAD+RTT G+Y+ NR  +KLT I D+I+CCRSG+AADTQA+
Sbjct:    29 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAV 88

Query:    73 SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKI-FRSNEGSFKAAIIIAGWDTVKGGQ 131
             +D V+Y +     +   E+NEPPLV+ AA+LF+++ +R  E    A IIIAGWD  +GGQ
Sbjct:    89 ADAVTYQL----GFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQ 143

Query:   132 VYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAS 191
             VY++P  G++ RQ+ A+GGSGSSYI GYVD  +R  M K EC+ F    L+LAM RD +S
Sbjct:   144 VYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSS 203

Query:   192 GGLINIGVLENGKPMEKLVFTQEEV 216
             GG+I +  ++    +E+ V   +++
Sbjct:   204 GGVIRLAAIQQSG-VERQVLLGDQI 227

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISO;ISS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

ZFIN|ZDB-GENE-990415-216 psmb6 "proteasome (prosome, macropain) subunit, beta type, 6" [Danio rerio (taxid:7955)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 101/203 (49%), Positives = 139/203 (68%)

Query:    13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
             EV+ GTT +A E++ GV+MGAD+R T G Y+ NR  +KLT I D I+CCRSG+AADTQAI
Sbjct:    28 EVSTGTTIMAVEFDGGVVMGADSRATTGAYIANRVTDKLTPIHDRIFCCRSGSAADTQAI 87

Query:    73 SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKI-FRSNEGSFKAAIIIAGWDTVKGGQ 131
             +D V+Y +     +   E++E PLV  AA+LF+ + +R  E    A II+AGWD  +GGQ
Sbjct:    88 ADAVTYQL----GFHSIELDEAPLVQTAASLFRDMCYRYRE-ELMAGIIVAGWDRRRGGQ 142

Query:   132 VYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAS 191
             VY +P  G+LTRQ  +VGGSGSSYI GYVD  +R+ M K+EC+ F    L+LAM RD +S
Sbjct:   143 VYTVPVGGMLTRQPVSVGGSGSSYIYGYVDSNYRSGMSKEECLKFTAGALTLAMERDGSS 202

Query:   192 GGLINIGVL-ENGKPMEKLVFTQ 213
             GG++ + V+ E G   + ++  Q
Sbjct:   203 GGVVRLAVISEQGVERQAILGNQ 225

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

FB|FBgn0010590 Prosbeta1 "Proteasome beta1 subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 95/212 (44%), Positives = 146/212 (68%)

Query:     6 PDIS-AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSG 64
             PD     T V+ GTT +A E++ GV++GAD+RT+ G YV NR  +KLT+I+D +YCCRSG
Sbjct:     3 PDFDFTDTPVSTGTTIMAVEFDGGVVIGADSRTSSGAYVANRVTDKLTRITDKVYCCRSG 62

Query:    65 TAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGW 124
             +AADTQAI+D+V+Y ++    Y   + N+  LV+ AA+ F+    S   S  A II+AGW
Sbjct:    63 SAADTQAIADIVAYSLN----YHENQTNKDALVFEAASEFRNYCYSYRESLLAGIIVAGW 118

Query:   125 DTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
             D  +GGQVY++P  G+LTR++C +GGSGSS+I G+V + +R NM  ++C+ F+K  +  A
Sbjct:   119 DEQRGGQVYSIPLGGMLTRESCTIGGSGSSFIYGFVREHYRPNMALEDCVTFVKKAVQHA 178

Query:   185 MARDYASGGLINIGVL-ENGKPMEKLVFTQEE 215
             +  D +SGG++ IG++ ++G  +E+ +F   E
Sbjct:   179 IYHDGSSGGVVRIGIITKDG--IERRIFYNTE 208

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0005839 "proteasome core complex" evidence=ISS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

DICTYBASE|DDB_G0267390 psmB6 "proteasome subunit beta type 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 91/197 (46%), Positives = 133/197 (67%)

Query:    14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
             V  GT+ +A EY+ GV+MGAD+RTT G Y+ NR   K+T I + IYCCRSG+AADTQAIS
Sbjct:    11 VDLGTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAIS 70

Query:    74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVY 133
             D V Y++++  +    E+ + P V  AA+LFQ +  SN+ +  A II+AGWD  +GG VY
Sbjct:    71 DYVRYYLEMHTS----ELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVY 126

Query:   134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
              +   G + +Q  A+GGSGS+YI GY D +++  M K ECI+F++  L+LAM RD +SGG
Sbjct:   127 NISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGG 186

Query:   194 LINIGVLENGKPMEKLV 210
             +I + +++      K++
Sbjct:   187 VIRLCIIDKNGVERKMI 203

GO:0008233 "peptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IPI

GO:0005634 "nucleus" evidence=IEA;IPI

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000017034 AN3756 [Emericella nidulans (taxid:162425)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 91/192 (47%), Positives = 133/192 (69%)

Query:    13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
             EV  GT+ +A  +++GV++GAD+RTT G Y+ NR  +KLT++ D I+CCRSG+AADTQA+
Sbjct:    27 EVNLGTSIMAINFKDGVILGADSRTTTGAYIANRVTDKLTQVHDTIWCCRSGSAADTQAV 86

Query:    73 SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
             +D+VSYH+++   Y     NEPP    AA LFQ++   N+    A IIIAG+D   GGQV
Sbjct:    87 ADIVSYHLNM---YSIVN-NEPPSTQVAAALFQELCYENKDMLSAGIIIAGYDPRHGGQV 142

Query:   133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
             Y++P  G L +Q  ++GGSGS+YI GY D  W+ NM ++E ++F++  L  A+  D +SG
Sbjct:   143 YSIPLGGSLHKQAYSIGGSGSTYIYGYCDANWKENMTEEEGVEFVRGALREAIKWDGSSG 202

Query:   193 GLINIGVL-ENG 203
             G+I + VL +NG
Sbjct:   203 GVIRMVVLTKNG 214

GO:0005634 "nucleus" evidence=IEA

GO:0019774 "proteasome core complex, beta-subunit complex" evidence=IEA

GO:0034515 "proteasome storage granule" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010499 "proteasomal ubiquitin-independent protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LD27	PSB6_ARATH	3, ., 4, ., 2, 5, ., 1	0.3870	0.9159	0.8884	yes	N/A
Q8SR11	PSB1_ENCCU	3, ., 4, ., 2, 5, ., 1	0.4193	0.7831	0.8719	yes	N/A
Q2NI68	PSB_METST	3, ., 4, ., 2, 5, ., 1	0.2952	0.8672	0.9560	yes	N/A
Q8ZYF2	PSB1_PYRAE	3, ., 4, ., 2, 5, ., 1	0.2636	0.8584	0.9603	yes	N/A
D3S8M7	PSB_METSF	3, ., 4, ., 2, 5, ., 1	0.3177	0.8805	0.8883	yes	N/A
C7P6N4	PSB_METFA	3, ., 4, ., 2, 5, ., 1	0.3116	0.8849	0.8928	yes	N/A
Q58634	PSB_METJA	3, ., 4, ., 2, 5, ., 1	0.3145	0.8849	0.8928	yes	N/A
Q60692	PSB6_MOUSE	3, ., 4, ., 2, 5, ., 1	0.4734	0.8938	0.8487	yes	N/A
Q3MHN0	PSB6_BOVIN	3, ., 4, ., 2, 5, ., 1	0.4807	0.8893	0.8410	yes	N/A
A0RXV1	PSB2_CENSY	3, ., 4, ., 2, 5, ., 1	0.2926	0.8672	0.9333	yes	N/A
A8AB58	PSB2_IGNH4	3, ., 4, ., 2, 5, ., 1	0.2797	0.8185	0.8726	yes	N/A
A9A2U7	PSB2_NITMS	3, ., 4, ., 2, 5, ., 1	0.2789	0.8141	0.8761	yes	N/A
A4WH05	PSB1_PYRAR	3, ., 4, ., 2, 5, ., 1	0.2636	0.8584	0.9603	yes	N/A
P28073	PSB6_RAT	3, ., 4, ., 2, 5, ., 1	0.4754	0.8805	0.8361	yes	N/A
P28072	PSB6_HUMAN	3, ., 4, ., 2, 5, ., 1	0.4807	0.8893	0.8410	yes	N/A
O43063	PSB1_SCHPO	3, ., 4, ., 2, 5, ., 1	0.43	0.8539	0.8539	yes	N/A
Q55GJ6	PSB6_DICDI	3, ., 4, ., 2, 5, ., 1	0.4619	0.8539	0.9018	yes	N/A
P38624	PSB1_YEAST	3, ., 4, ., 2, 5, ., 1	0.4299	0.8893	0.9348	yes	N/A
D3RX66	PSB_FERPA	3, ., 4, ., 2, 5, ., 1	0.2641	0.8938	0.9619	yes	N/A
B1L6S7	PSB1_KORCO	3, ., 4, ., 2, 5, ., 1	0.2834	0.8008	0.8786	yes	N/A
Q975D1	PSB2_SULTO	3, ., 4, ., 2, 5, ., 1	0.2892	0.8539	0.9323	yes	N/A
A6UT20	PSB_META3	3, ., 4, ., 2, 5, ., 1	0.2890	0.8938	0.9308	yes	N/A
B5IEE5	PSB_ACIB4	3, ., 4, ., 2, 5, ., 1	0.3025	0.8097	0.8714	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.25.1	0.914
3rd Layer	3.4.25	0.921

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	226
cd03762	188	cd03762, proteasome_beta_type_6, proteasome beta t	1e-81
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	3e-54
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	4e-47
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	1e-46
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	1e-41
cd03763	189	cd03763, proteasome_beta_type_7, proteasome beta t	7e-31
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	2e-26
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	3e-26
cd03764	188	cd03764, proteasome_beta_archeal, Archeal proteaso	4e-26
cd03761	188	cd03761, proteasome_beta_type_5, proteasome beta t	2e-18
PTZ00488	247	PTZ00488, PTZ00488, Proteasome subunit beta type-5	3e-15
cd03758	193	cd03758, proteasome_beta_type_2, proteasome beta t	2e-13
cd03757	212	cd03757, proteasome_beta_type_1, proteasome beta t	5e-10
cd03756	211	cd03756, proteasome_alpha_archeal, proteasome_alph	1e-09
cd03760	197	cd03760, proteasome_beta_type_4, proteasome beta t	1e-08
TIGR03633	224	TIGR03633, arc_protsome_A, proteasome endopeptidas	2e-07
cd01911	209	cd01911, proteasome_alpha, proteasome alpha subuni	3e-07
TIGR03690	219	TIGR03690, 20S_bact_beta, proteasome, beta subunit	4e-07
PRK03996	241	PRK03996, PRK03996, proteasome subunit alpha; Prov	3e-06
cd03759	195	cd03759, proteasome_beta_type_3, proteasome beta t	3e-06
cd03753	213	cd03753, proteasome_alpha_type_5, proteasome_alpha	9e-06
cd03755	207	cd03755, proteasome_alpha_type_7, proteasome_alpha	4e-05
cd03752	213	cd03752, proteasome_alpha_type_4, proteasome_alpha	0.001
PTZ00246	253	PTZ00246, PTZ00246, proteasome subunit alpha; Prov	0.001
cd03750	227	cd03750, proteasome_alpha_type_2, proteasome_alpha	0.003

>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit

 Score =  241 bits (617), Expect = 1e-81
 Identities = 99/204 (48%), Positives = 139/204 (68%), Gaps = 17/204 (8%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT IA EY+ GV++GAD+RT+ G+YV NR  +KLT++ D IYCCRSG+AADTQAI+D V 
Sbjct: 1   TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVR 60

Query: 78  YHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
           Y++D+     +  E+ EPPLV  AA+LF+ +  + +    A II+AGWD   GGQVY++P
Sbjct: 61  YYLDM-----HSIELGEPPLVKTAASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIP 115

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
             G+L RQ  A+GGSGS+YI GYVD  ++  M  +ECI F+K  LSLAM+RD +SGG+I 
Sbjct: 116 LGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIR 175

Query: 197 IGVLENGKPMEKLVFTQEEVQHFF 220
           + ++           T++ V+  F
Sbjct: 176 LVII-----------TKDGVERKF 188

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score =  171 bits (436), Expect = 3e-54
 Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 5/185 (2%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +  + ++GV++ ADTR + G+ V +R  +K+ KISDNI    +G+AADTQA++ L+ 
Sbjct: 1   TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLK 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKI-FRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
            ++ L   Y  R       V  AANL   I +      +  ++I+ G D   G  +Y + 
Sbjct: 61  RNLRL---YELRN-GRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVD 116

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
             G L        GSGS Y  G +D+ ++ +M  +E ++ +K  +  A+ RD +SGG ++
Sbjct: 117 PLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVD 176

Query: 197 IGVLE 201
           + V+ 
Sbjct: 177 VAVIT 181

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score =  153 bits (389), Expect = 4e-47
 Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 7/186 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +  + ++GV++ AD R T G  V +   EK+ KI D+I C  +G AAD Q + + + 
Sbjct: 1   TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLR 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKI---FRSNEGSFKAAIIIAGWDTVKGGQVYA 134
               L   Y  R   EP  V   A L   +   +  +      ++++AG D   G Q+Y+
Sbjct: 61  KEAQL---YRLRY-GEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYS 116

Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
           +  SG          GSGS Y LG ++K ++ +M  +E I+     L  A+ RD  SGG 
Sbjct: 117 VDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGN 176

Query: 195 INIGVL 200
           I + V+
Sbjct: 177 IEVAVI 182

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score =  152 bits (386), Expect = 1e-46
 Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 7/191 (3%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNR-EAEKLTKISDNIYCCRSGTAADTQAI 72
           V  GTT +  + ++GV++ AD R T G+ + ++   EK+ KI D+I    +G AAD Q +
Sbjct: 1   VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTL 60

Query: 73  SDLVSYHIDLDVAYGYREMNEPP--LVYRAANLFQK-IFRSNEGSFKAAIIIAGWDTVKG 129
            D       L   Y  R        L  R A+  Q     S    +  +++IAG+D   G
Sbjct: 61  VDYARAEAQL---YRLRYGRPISVELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDEDGG 117

Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDY 189
             +Y++  SG +        GSGS Y  G+++K ++ +M  +E ++     L  A+ RD 
Sbjct: 118 PHLYSIDPSGSVIEYKATAIGSGSQYAYGFLEKLYKPDMTLEEAVELAVKALKEAIERDA 177

Query: 190 ASGGLINIGVL 200
            SGG I + V+
Sbjct: 178 LSGGNIEVAVI 188

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score =  141 bits (357), Expect = 1e-41
 Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 10/208 (4%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           GTTT+  + ++GV++ AD R T G  + +   EK+ KI D+I    +G AAD Q +    
Sbjct: 30  GTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYA 89

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS---FKAAIIIAGWDTVKGGQVY 133
                           EP  V   A L   I +    S   +  ++++AG D   G ++Y
Sbjct: 90  RAEA----QLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLY 144

Query: 134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
           +   SG          GSGS +  G+++KE+R ++  +E I+     L  A+ RD ASGG
Sbjct: 145 STDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGG 204

Query: 194 LINIGVLENGKPMEKLVFTQEEVQHFFN 221
            I + V+   +   KL    EE++   +
Sbjct: 205 GIEVAVITKDEGFRKL--DGEEIKKLLD 230

Length = 236

>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit

 Score =  111 bits (281), Expect = 7e-31
 Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 11/190 (5%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +   +++GV++GADTR T G  V ++  EK+  I+ NIYCC +GTAADT+A+++++S
Sbjct: 1   TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMIS 60

Query: 78  YHIDLDVAYGYREMN---EPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYA 134
            +++L        +N   +P +V     L Q +FR   G   AA+++ G D   G  +Y+
Sbjct: 61  SNLEL------HRLNTGRKPRVVTALTMLKQHLFRYQ-GHIGAALVLGGVD-YTGPHLYS 112

Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
           +   G   +      GSGS   +  ++  ++ +M ++E    +   +   +  D  SG  
Sbjct: 113 IYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSN 172

Query: 195 INIGVLENGK 204
           +++ V+    
Sbjct: 173 VDLCVITKDG 182

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score = 99.8 bits (249), Expect = 2e-26
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           +T++A + + GV++ AD R + G  V      K+ K  D I    +G AAD Q +   + 
Sbjct: 1   STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLR 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSN--EGSFKAAIIIAGWDTVKGGQVYAL 135
             + L   Y  R   EP  V   A    K+ +       F   +I+AG D   GG +Y +
Sbjct: 61  EALQL---YRLRY-GEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYI 115

Query: 136 PASG-VLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIK 178
             SG V+        GS S      ++K ++ +M  +E ++   
Sbjct: 116 DPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELAL 159

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score = 99.6 bits (249), Expect = 3e-26
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 8/186 (4%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           GTTT+  + ++GV++ AD R ++G +V ++ A+K+ +I D I    +G+  D Q++  ++
Sbjct: 1   GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRIL 60

Query: 77  SYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYA 134
                L     Y      P  V   A L   I  SN    F   +++ G D  +G  +Y+
Sbjct: 61  KAEAKL-----YELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGVDE-EGPHLYS 114

Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
           L  +G +   +    GSGS    G ++ E+R +M  +E        +  A+ RD ASG  
Sbjct: 115 LDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNG 174

Query: 195 INIGVL 200
           I++ V+
Sbjct: 175 IDVAVI 180

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit

 Score = 99.6 bits (249), Expect = 4e-26
 Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 7/192 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+    ++GV++ AD R ++G ++ ++  +K+ +I D I    +G+  D Q++  ++ 
Sbjct: 1   TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILK 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALP 136
                +          P  +   A L   I  S++   +   ++I G D  +G  +Y+L 
Sbjct: 61  ----AEARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLD 115

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
             G +        GSGS Y  G ++ E++ +M  +E        +  A+ RD ASG  I+
Sbjct: 116 PLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGID 175

Query: 197 IGVL-ENGKPME 207
           + V+ ++G    
Sbjct: 176 VVVITKDGYKEL 187

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit

 Score = 79.2 bits (196), Expect = 2e-18
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 6/181 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+A  ++ GV++  D+R T G+Y+ ++  +K+ +I+  +    +G AAD Q    ++ 
Sbjct: 1   TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLG 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALP 136
               L   Y  R   E   V  A+ L   +    +G       +I GWD   G  +Y + 
Sbjct: 61  RECRL---YELRN-KERISVAAASKLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVD 115

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
           + G   + +    GSGS+Y  G +D  +R ++  +E  D  +  +  A  RD  SGG +N
Sbjct: 116 SDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVN 175

Query: 197 I 197
           +
Sbjct: 176 L 176

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional

 Score = 71.9 bits (176), Expect = 3e-15
 Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 6/193 (3%)

Query: 6   PDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGT 65
            D +   E   GTTT+A +Y  G+++  D++ T G Y+ ++  +K+ +I+  +    +G 
Sbjct: 28  GDANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGG 87

Query: 66  AADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGW 124
           AAD       ++    L   Y  R   E   V  A+ +   I  + +G       +I GW
Sbjct: 88  AADCSFWERELAMQCRL---YELRN-GELISVAAASKILANIVWNYKGMGLSMGTMICGW 143

Query: 125 DTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
           D  KG  ++ +   G     N    GSGS+Y  G +D  ++ ++  +E  D  +  +  A
Sbjct: 144 DK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHA 202

Query: 185 MARDYASGGLINI 197
             RD  SGG IN+
Sbjct: 203 TFRDAYSGGAINL 215

Length = 247

>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 26  ENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVA 85
           ++ V++ ADT       V   + +K+ K+SD+     SG A D    ++ +  +I L   
Sbjct: 10  KDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQL--- 66

Query: 86  YGYREMNEPPLVYRAANLFQKI----FRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVL 141
           Y  R          AAN  ++      RS    ++  +++AG+D V+G  +Y +   G L
Sbjct: 67  YKMRN-GYELSPKAAANFTRRELAESLRSRTP-YQVNLLLAGYDKVEGPSLYYIDYLGTL 124

Query: 142 TRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIK 178
            +   A  G G+ + L  +D+ ++ +M  +E ++ +K
Sbjct: 125 VKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMK 161

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 193

>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 20/185 (10%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G T +A    +  ++  DTR + G  + +R++ K+ K++D      SG  AD  A++  +
Sbjct: 8   GGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRL 67

Query: 77  SYHIDLDVAYGY---REMNEPPLVYRAAN-LFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
              I +   Y Y   +EM+   +    +  L+ + F      +    I+AG D    G V
Sbjct: 68  KARIKM---YKYSHNKEMSTEAIAQLLSTILYSRRFF----PYYVFNILAGIDEEGKGVV 120

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVD-----KEW----RANMKKQECIDFIKMGLSL 183
           Y+    G   R+  + GGS SS I   +D     K      R  +  +E +  +K   + 
Sbjct: 121 YSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTS 180

Query: 184 AMARD 188
           A  RD
Sbjct: 181 AAERD 185

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212

>gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 13/172 (7%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A   V  GTT +  + + GV++  D R T    V     EK+ KI D++    SG  AD 
Sbjct: 21  AREAVKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADA 79

Query: 70  QAISDLVSYHIDLDVAYGYREMNEPP----LVYRAANLFQKIFRSNEGS--FKAAIIIAG 123
           +    L+         +      EP     LV +  +L Q+ +  + G   F  A++IAG
Sbjct: 80  RV---LIDRARVEAQIHRLT-YGEPIDVEVLVKKICDLKQQ-YTQHGGVRPFGVALLIAG 134

Query: 124 WDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECID 175
            D   G +++    SG          GSG   +  +++KE++ +M  +E I+
Sbjct: 135 VDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIE 185

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 211

>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 14/191 (7%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           GT+ IA +Y++GV++ ADT  + G+    +  E++ K+ DN     SG  AD Q +  L+
Sbjct: 2   GTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLL 61

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIF---RSNEGSFKAAIIIAGWDTVKG---G 130
              +  D          P  ++   +   ++    RS        +++ G D       G
Sbjct: 62  DQLVIDDECLDDGHSLSPKEIH---SYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLG 118

Query: 131 QVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA--NMKKQECIDFIKMGLSLAMARD 188
            V  L   G          G G+   L  + + W    ++ ++E    I+  + +   RD
Sbjct: 119 YVDLL---GTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRD 175

Query: 189 YASGGLINIGV 199
             S     I V
Sbjct: 176 ARSINKYQIAV 186

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197

>gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex, archaeal, alpha subunit

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 27/218 (12%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A   V  GTT +  + ++GV++  D R T    V     EK+ KI D+I    SG  AD 
Sbjct: 22  AREAVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADA 80

Query: 70  QAISDL---------VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAA 118
           + + D          ++Y   +DV           L  +  +L Q+ +  + G   F  A
Sbjct: 81  RVLIDRARIEAQINRLTYGEPIDVET---------LAKKICDLKQQ-YTQHGGVRPFGVA 130

Query: 119 IIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIK 178
           ++IAG D   G +++    SG L        G+G   +  +++KE+R ++   E I+   
Sbjct: 131 LLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELAL 189

Query: 179 MGLSLAMARDYASGGLINIGVLE-NGKPMEKLVFTQEE 215
             L  A+  D  +   + +  +    K   KL  + EE
Sbjct: 190 KALYSAV-EDKLTPENVEVAYITVEDKKFRKL--SVEE 224

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 224

>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit

 Score = 49.0 bits (118), Expect = 3e-07
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 18/170 (10%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  G+T +  + ++GV++  + + T    +     EK+ KI D+I C  +G  AD + + 
Sbjct: 24  VKNGSTAVGIKGKDGVVLAVEKKVT-SKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLV 82

Query: 74  DL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS---FKAAIIIAGWD 125
           +       +Y       YG   +    LV R A+L Q    +  G    F  +++IAG+D
Sbjct: 83  NRARVEAQNYRYT----YGE-PIPVEVLVKRIADLAQV--YTQYGGVRPFGVSLLIAGYD 135

Query: 126 TVKGGQVYALPASGVLTR-QNCAVGGSGSSYILGYVDKEWRANMKKQECI 174
              G Q+Y    SG     +  A+ G GS     +++K ++ ++  +E I
Sbjct: 136 EEGGPQLYQTDPSGTYFGYKATAI-GKGSQEAKTFLEKRYKKDLTLEEAI 184

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each. Length = 209

>gnl|CDD|163402 TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 12/184 (6%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           GTT +A  Y  GV+M  D R T G  + +R+ EK+    +      +GTA     +  L 
Sbjct: 2   GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRL- 60

Query: 77  SYHIDLDVAYGYREMNEPPLVYRA-ANLFQKIFRSNEGS----FKAAIIIAGWDTVKG-G 130
            + ++L+    Y ++   PL     AN    + R N  +         ++AG+D   G G
Sbjct: 61  -FQVELE---HYEKIEGVPLTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAG 116

Query: 131 QVYAL-PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDY 189
           ++++     G    +     GSGS +  G + K +  ++ + + +      L  A   D 
Sbjct: 117 RIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAADDDS 176

Query: 190 ASGG 193
           A+GG
Sbjct: 177 ATGG 180

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 219

>gnl|CDD|235192 PRK03996, PRK03996, proteasome subunit alpha; Provisional

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 45/217 (20%), Positives = 90/217 (41%), Gaps = 27/217 (12%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAAD-------- 68
           GTT +  + ++GV++  D R T    +     EK+ KI D+I    +G  AD        
Sbjct: 36  GTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRA 94

Query: 69  -TQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWD 125
             +A  + ++Y   + V           L  +  +  Q+ +  + G   F  A++IAG D
Sbjct: 95  RVEAQINRLTYGEPIGVET---------LTKKICDHKQQ-YTQHGGVRPFGVALLIAGVD 144

Query: 126 TVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM 185
              G +++    SG          G+G   ++ +++K ++ ++  +E I+     L+ A 
Sbjct: 145 D-GGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKAN 203

Query: 186 ARDYASGGLINIGVLE-NGKPMEKLVFTQEEVQHFFN 221
                    + I  ++   K   KL  + EE++ +  
Sbjct: 204 EGKLDPEN-VEIAYIDVETKKFRKL--SVEEIEKYLE 237

Length = 241

>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 6/178 (3%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G   +A   ++ V + +D R  +     + + +K+ +I D +Y   +G A D Q ++  +
Sbjct: 3   GGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKL 62

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAAN-LFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYAL 135
            + ++L      RE+         ++ L++K F    G +    ++AG D      +  +
Sbjct: 63  RFRVNLYRLREEREIKPKTFSSLISSLLYEKRF----GPYFVEPVVAGLDPDGKPFICTM 118

Query: 136 PASGVL-TRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
              G      +  V G+ S  + G  +  WR +M+  E  + I   L  A+ RD  SG
Sbjct: 119 DLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSG 176

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 195

>gnl|CDD|239722 cd03753, proteasome_alpha_type_5, proteasome_alpha_type_5

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 16/150 (10%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  G+T I  + + GV++  + R T    +     EK+ +I D+I C  SG  AD + + 
Sbjct: 24  IKLGSTAIGIKTKEGVVLAVEKRIT-SPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLI 82

Query: 74  DLVSYHIDLDV---AYGYRE-MNEPPLVYRAANLFQKIFRSNEGS------FKAAIIIAG 123
           D    H  ++     + Y E M    +    ++L  +    ++G       F  A++IAG
Sbjct: 83  D----HARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAG 138

Query: 124 WDTVKGGQVYALPASGVLTRQNCAVGGSGS 153
            D   G Q++    SG  TR +    GSGS
Sbjct: 139 VDE-NGPQLFHTDPSGTFTRCDAKAIGSGS 167

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 213

>gnl|CDD|239724 cd03755, proteasome_alpha_type_7, proteasome_alpha_type_7

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 20/183 (10%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A   V  GTT +    ++ V++G + ++        R   K+  + D++    +G  AD 
Sbjct: 20  AQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQD-PRTVRKICMLDDHVCLAFAGLTADA 78

Query: 70  QAISDLV-----SYHIDLDVAYGYREMNEPPLVYRA---ANLFQKIFRSNEGS--FKAAI 119
           + + +       S+ + ++            + Y     A L Q+  +S  G   F  + 
Sbjct: 79  RVLINRARLECQSHRLTVEDP--------VTVEYITRYIAGLQQRYTQSG-GVRPFGIST 129

Query: 120 IIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKM 179
           +I G+D     ++Y    SG  +       G  S  +  +++K ++  M + + I     
Sbjct: 130 LIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIK 189

Query: 180 GLS 182
            L 
Sbjct: 190 ALL 192

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 207

>gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 17/130 (13%)

Query: 19  TTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSY 78
           T +    ++G+++ A+ + T      +  +EK+ KI D+I C  +G  +D      L++Y
Sbjct: 31  TCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANI---LINY 87

Query: 79  HIDLDVAYGYREM-NEPPLVYRAANLFQKIFRSNEG--------SFKAAIIIAGWDTVKG 129
                +A  Y     EP  V     L Q++    +G         F  + + AGWD   G
Sbjct: 88  A--RLIAQRYLYSYQEPIPV---EQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYG 142

Query: 130 GQVYALPASG 139
            Q+Y    SG
Sbjct: 143 FQLYQSDPSG 152

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 213

>gnl|CDD|173491 PTZ00246, PTZ00246, proteasome subunit alpha; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 10/209 (4%)

Query: 20  TIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQA-ISDLVSY 78
           T+    + GV++GAD   +       +  EK+ KI  +I+C  +G  AD    I+    Y
Sbjct: 34  TVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLY 93

Query: 79  HIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG--SFKAAIIIAGWDTVKGGQVYALP 136
                  YG  +  E  LV +  +L Q  +    G   F  + + AG+D   G Q+Y   
Sbjct: 94  AQRYRYTYGEPQPVEQ-LVVQICDLKQS-YTQFGGLRPFGVSFLFAGYDENLGYQLYHTD 151

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
            SG  +       G  +      + +EW+ ++  ++ +      L+ +M         I 
Sbjct: 152 PSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIE 211

Query: 197 IGVLEN----GKPMEKLVFTQEEVQHFFN 221
           +G+L +    G+P++K++ +++E+     
Sbjct: 212 VGILSHGETDGEPIQKML-SEKEIAELLK 239

Length = 253

>gnl|CDD|239719 cd03750, proteasome_alpha_type_2, proteasome_alpha_type_2

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 38/224 (16%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A   V+ G  ++  +  NGV++  + +      +      K+ +I+ +I    SG   D 
Sbjct: 20  ALAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPD- 77

Query: 70  QAISDLVSYHIDLDVA------YGYREMNEPP----LVYRAANLFQKIFRSNEG--SFKA 117
                   + + +  A      Y Y    EP     LV   A++ Q+ +  + G   F  
Sbjct: 78  --------FRVLVKKARKIAQQY-YLVYGEPIPVSQLVREIASVMQE-YTQSGGVRPFGV 127

Query: 118 AIIIAGWDTVKGGQVYALPASGV-LTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF 176
           +++IAGWD   G  +Y +  SG   T +  A+ G   S    +++K +  ++   E  D 
Sbjct: 128 SLLIAGWD-EGGPYLYQVDPSGSYFTWKATAI-GKNYSNAKTFLEKRYNEDL---ELEDA 182

Query: 177 IKMGLSLAMARDYASGGL----INIGVLENGKPMEKLVFTQEEV 216
           I   +     ++   G +    I IG+    K    L  T  E+
Sbjct: 183 IHTAIL--TLKEGFEGQMTEKNIEIGICGETKGFRLL--TPAEI 222

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 227

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	100.0
PTZ00488	247	Proteasome subunit beta type-5; Provisional	100.0
PTZ00246	253	proteasome subunit alpha; Provisional	100.0
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	100.0
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	100.0
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	100.0
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	100.0
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	100.0
PRK03996	241	proteasome subunit alpha; Provisional	100.0
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	100.0
KOG0176|consensus	241		100.0
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	100.0
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	100.0
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	100.0
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	100.0
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	100.0
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	100.0
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	100.0
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	100.0
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	100.0
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	100.0
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	100.0
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	100.0
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	100.0
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	100.0
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	100.0
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	100.0
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	100.0
KOG0178|consensus	249		100.0
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	100.0
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	100.0
KOG0174|consensus	224		100.0
KOG0183|consensus	249		100.0
KOG0179|consensus	235		100.0
KOG0175|consensus	285		100.0
KOG0181|consensus	233		100.0
KOG0173|consensus	271		100.0
KOG0184|consensus	254		100.0
KOG0182|consensus	246		100.0
KOG0177|consensus	200		100.0
KOG0180|consensus	204		100.0
KOG0863|consensus	264		100.0
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	100.0
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	100.0
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	100.0
KOG0185|consensus	256		100.0
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.97
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	99.64
COG3484	255	Predicted proteasome-type protease [Posttranslatio	99.42
PF09894	194	DUF2121: Uncharacterized protein conserved in arch	97.37
COG4079	293	Uncharacterized protein conserved in archaea [Func	96.52
KOG3361|consensus	157		85.72

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6e-48  Score=320.54  Aligned_cols=208  Identities=28%  Similarity=0.441  Sum_probs=197.2

Q ss_pred             CCCCccccCC-ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           8 ISAGTEVTCG-TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         8 ~~~~~ai~~g-ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +. .+++++| +|+|||+++||||||+|+|.+++.++.+++.+||++|++||+|++||+.+|++.++++++.+++.|+  
T Consensus        21 ~a-~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~--   97 (236)
T COG0638          21 YA-LEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYR--   97 (236)
T ss_pred             HH-HHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHH--
Confidence            45 6777775 9999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKE  163 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~  163 (226)
                        +.++++++++.+++++++++|.++   +||++++|+||+|+ ++|+||.+||+|++.++++.|+|+|++.++++||+.
T Consensus        98 --~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~  174 (236)
T COG0638          98 --LRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKE  174 (236)
T ss_pred             --HHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhh
Confidence              999999999999999999999998   49999999999999 899999999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CCeEEEEeChhhHhhHhhccC
Q psy8684         164 WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENG-KPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       164 ~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~-g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      |+++|+++||++++.+||..+.+||..+++++++++++++ |   ++.+.++|+..++.++.
T Consensus       175 y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~---~~~~~~~~~~~~~~~~~  233 (236)
T COG0638         175 YREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEG---FRKLDGEEIKKLLDDLS  233 (236)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCC---eEEcCHHHHHHHHHHHh
Confidence            9999999999999999999999999988899999999995 5   46789999999887764

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=100.00  E-value=1.4e-46  Score=313.99  Aligned_cols=206  Identities=24%  Similarity=0.393  Sum_probs=194.9

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      +-.+.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+    ++
T Consensus        33 ~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~----~~  108 (247)
T PTZ00488         33 AIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYE----LR  108 (247)
T ss_pred             ccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHH----HH
Confidence            34578999999999999999999999998899999999999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCC
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMK  169 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s  169 (226)
                      +|++|+++.+|+++++++|++|. |+.+++|+||||. .||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||
T Consensus       109 ~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms  187 (247)
T PTZ00488        109 NGELISVAAASKILANIVWNYKGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLN  187 (247)
T ss_pred             HCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCC
Confidence            99999999999999999998853 5667789999997 689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         170 KQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       170 ~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      .+||++++++||..+.+||..++++++|++|+++| +  +.++++||+++++.++
T Consensus       188 ~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g-~--~~l~~~ei~~~l~~~~  239 (247)
T PTZ00488        188 DEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG-W--KKISADDCFDLHQKYA  239 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc-c--EECCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999 4  6799999999998765

>PTZ00246 proteasome subunit alpha; Provisional

Probab=100.00  E-value=4.9e-47  Score=318.78  Aligned_cols=213  Identities=18%  Similarity=0.290  Sum_probs=199.2

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+|+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|+++++|..+|++.+.+.++.+++.|+   
T Consensus        23 YA-~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~---   98 (253)
T PTZ00246         23 YA-LEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYR---   98 (253)
T ss_pred             HH-HHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHH---
Confidence            56 89999999999999999999999999999877777789999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       +.++.++++..+++.++..+|.++     |||++++|+||||++.+|+||.+||+|++.+++++|+|+|+.+++++|++
T Consensus        99 -~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~  177 (253)
T PTZ00246         99 -YTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQ  177 (253)
T ss_pred             -HHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHH
Confidence             899999999999999999888764     59999999999996578999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC---CeEEEEeChhhHhhHhhccCC
Q psy8684         163 EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK---PMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       163 ~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g---~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      .|+++|+++||++++.+||..+.++|..+++.++|++++++|   +..++.|+++||+++|.+++.
T Consensus       178 ~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~~~  243 (253)
T PTZ00246        178 EWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKVTQ  243 (253)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHHhh
Confidence            999999999999999999999999999899999999999874   233688999999999998763

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=100.00  E-value=2.1e-46  Score=303.60  Aligned_cols=191  Identities=19%  Similarity=0.292  Sum_probs=180.6

Q ss_pred             CCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCC
Q psy8684          16 CGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPP   95 (226)
Q Consensus        16 ~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   95 (226)
                      +|+|+|||+++||||||+|+|.+++.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+    +++++++
T Consensus         2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~----~~~~~~~   77 (195)
T cd03759           2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYR----LREEREI   77 (195)
T ss_pred             CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHH----HHhCCCC
Confidence            699999999999999999999999877777789999999999999999999999999999999999999    9999999


Q ss_pred             CHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeee-eEEecCChHHHHHHHhhhhcCCCCHHHH
Q psy8684          96 LVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQN-CAVGGSGSSYILGYVDKEWRANMKKQEC  173 (226)
Q Consensus        96 ~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~-~~a~Gsg~~~~~~~Le~~~~~~~s~~ea  173 (226)
                      +++.+|++++++++.+| +||++++|+||||++++|+||.+||.|++.++. ++|+|+|++.++++||+.|+++||.+||
T Consensus        78 ~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea  157 (195)
T cd03759          78 KPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDEL  157 (195)
T ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence            99999999999998764 699999999999976789999999999987766 9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684         174 IDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF  211 (226)
Q Consensus       174 i~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l  211 (226)
                      ++++++||+.+.+||..++++++|++|+++| +.++.|
T Consensus       158 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~~~~  194 (195)
T cd03759         158 FETISQALLSAVDRDALSGWGAVVYIITKDK-VTTRTL  194 (195)
T ss_pred             HHHHHHHHHHHHhhCcccCCceEEEEEcCCc-EEEEec
Confidence            9999999999999999999999999999999 866544

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=100.00  E-value=4.9e-46  Score=306.43  Aligned_cols=203  Identities=21%  Similarity=0.313  Sum_probs=189.7

Q ss_pred             CCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCC
Q psy8684          16 CGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPP   95 (226)
Q Consensus        16 ~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   95 (226)
                      +|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+    +++++++
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~----~~~~~~i   76 (219)
T TIGR03690         1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYE----KIEGVPL   76 (219)
T ss_pred             CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHH----HHHCCCC
Confidence            489999999999999999999999999999999999999999999999999999999999999999999    9999999


Q ss_pred             CHHHHHHHHHHHHHhc----cCCceeEEEEEEEeCC-CCeEEEEECCCCc-eeeeeeEEecCChHHHHHHHhhhhcCCCC
Q psy8684          96 LVYRAANLFQKIFRSN----EGSFKAAIIIAGWDTV-KGGQVYALPASGV-LTRQNCAVGGSGSSYILGYVDKEWRANMK  169 (226)
Q Consensus        96 ~~~~~a~~l~~~~~~~----~~p~~v~~liaG~d~~-~~p~ly~id~~G~-~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s  169 (226)
                      +++.+++.+++++|.+    .|||++++|+||||.. ++|+||++||+|+ +..++++|+|+|+.+++++||+.|+++||
T Consensus        77 ~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms  156 (219)
T TIGR03690        77 TLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLD  156 (219)
T ss_pred             CHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcC
Confidence            9999999999999865    4699999999999964 6799999999995 77789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCc-------EEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684         170 KQECIDFIKMGLSLAMARDYASGGL-------INIGVLENGKPMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       170 ~~eai~la~~~l~~~~~~d~~~~~~-------i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      .+||++++.+||..+.++|..+++.       ++|++++++|   ++.++++||++++..++|
T Consensus       157 ~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g---~~~l~~~ei~~~~~~~~~  216 (219)
T TIGR03690       157 EDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG---ARRVPESELEELARAIVE  216 (219)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc---eEEcCHHHHHHHHHHHHh
Confidence            9999999999999999999866664       3999999888   468999999999998876

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=100.00  E-value=2.3e-46  Score=310.04  Aligned_cols=205  Identities=17%  Similarity=0.291  Sum_probs=191.5

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|+++|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+  
T Consensus        18 eyA-~~av~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~--   93 (227)
T cd03750          18 EYA-LAAVSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYY--   93 (227)
T ss_pred             HHH-HHHHHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHH--
Confidence            466 89999999999999999999999999985 78888899999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        +++|++++++.+++.+++++|.+     .|||++++|++|||. .||+||.+||+|++.+++++|+|+|+.+++++||
T Consensus        94 --~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le  170 (227)
T cd03750          94 --LVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLE  170 (227)
T ss_pred             --HHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHH
Confidence              99999999999999999999866     369999999999997 6899999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684         162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN  221 (226)
Q Consensus       162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~  221 (226)
                      +.|+++||++||++++++||..+.++|. ++.++++.+++++++  ++.++++||++++.
T Consensus       171 ~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~--~~~~~~~ei~~~~~  227 (227)
T cd03750         171 KRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKG--FRLLTPAEIKDYLA  227 (227)
T ss_pred             hhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCC--EEECCHHHHHHHhC
Confidence            9999999999999999999999998875 789999999999632  46899999999873

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=100.00  E-value=6.4e-46  Score=299.14  Aligned_cols=184  Identities=26%  Similarity=0.426  Sum_probs=178.6

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      +|+|||+++||||||+|+|.+++.++.+++.+|||+|++|+++++||..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~----~~~~~~i~~   76 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYE----LRNKERISV   76 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHH----HHHCCCCCH
Confidence            6899999999999999999999889888999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      +.+|+++++++|.+|+ ||++++|+||||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||+++
T Consensus        77 ~~la~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l  155 (188)
T cd03761          77 AAASKLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDL  155 (188)
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            9999999999999975 8999999999997 7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVLENGKPME  207 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~  207 (226)
                      +.+||..+.+||..+++.+++++|+++| +.
T Consensus       156 ~~~~l~~~~~rd~~sg~~~~v~ii~~~g-~~  185 (188)
T cd03761         156 ARRAIYHATHRDAYSGGNVNLYHVREDG-WR  185 (188)
T ss_pred             HHHHHHHHHHhcccCCCCeEEEEEcCCc-eE
Confidence            9999999999999999999999999999 63

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=100.00  E-value=8.5e-46  Score=303.65  Aligned_cols=193  Identities=24%  Similarity=0.326  Sum_probs=183.2

Q ss_pred             ccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684          14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE   93 (226)
Q Consensus        14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   93 (226)
                      +++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||..+|++.+.++++.+++.|+    +.+|+
T Consensus         5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~----~~~g~   80 (212)
T cd03757           5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYK----YSHNK   80 (212)
T ss_pred             cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHh----HHhCC
Confidence            46799999999999999999999999988888999999999999999999999999999999999999999    99999


Q ss_pred             CCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc-------
Q psy8684          94 PPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-------  165 (226)
Q Consensus        94 ~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~-------  165 (226)
                      +++++.++++++++++..| +||++++|+||||++++|+||.+||.|++.+++++|+|+|+.+++++||+.|+       
T Consensus        81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~  160 (212)
T cd03757          81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV  160 (212)
T ss_pred             CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence            9999999999999998765 49999999999997678999999999999999999999999999999999985       


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684         166 --ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF  211 (226)
Q Consensus       166 --~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l  211 (226)
                        ++||++||++++.+||+.+.+||..+++.++|++|+++| +..+.+
T Consensus       161 ~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g-~~~~~~  207 (212)
T cd03757         161 ERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG-IEEETF  207 (212)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC-EEEEee
Confidence              899999999999999999999999999999999999999 766544

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PRK03996 proteasome subunit alpha; Provisional

Probab=100.00  E-value=4.6e-46  Score=310.84  Aligned_cols=208  Identities=20%  Similarity=0.313  Sum_probs=195.3

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|+++|+|+|||+++||||||+|+|.++ .+...++.+||+.|++++++++||..+|++.++++++.+++.|+  
T Consensus        27 eya-~~av~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~--  102 (241)
T PRK03996         27 EYA-REAVKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINR--  102 (241)
T ss_pred             HHH-HHHHHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHH--
Confidence            567 89999999999999999999999999985 67777899999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        ++++++++++.+++.+++.+|.++     |||++++|+||||+ .||+||.+||+|++.+++++|+|+|+..++++|+
T Consensus       103 --~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le  179 (241)
T PRK03996        103 --LTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLE  179 (241)
T ss_pred             --HHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCcHHHHHHHH
Confidence              999999999999999999998763     59999999999997 6899999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684         162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~  223 (226)
                      +.|+++|+++||++++++||..+.++ ..+++.++|++++++| ..++.++++||++++..+
T Consensus       180 ~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~-~~~~~~~~~ei~~~~~~~  239 (241)
T PRK03996        180 KNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVET-KKFRKLSVEEIEKYLEKL  239 (241)
T ss_pred             HhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCC-CcEEECCHHHHHHHHHHh
Confidence            99999999999999999999999876 4578999999999998 568899999999998765

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=100.00  E-value=1.2e-45  Score=298.71  Aligned_cols=185  Identities=21%  Similarity=0.316  Sum_probs=177.8

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      +|+|||+++||||||+|+|.+++.++.+++.+|||+|++++++++||..+|++.+.++++.+++.|+    +++++++++
T Consensus         2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~----~~~~~~i~~   77 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYK----MRNGYELSP   77 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence            7899999999999999999999888999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhc---cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHH
Q psy8684          98 YRAANLFQKIFRSN---EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECI  174 (226)
Q Consensus        98 ~~~a~~l~~~~~~~---~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai  174 (226)
                      +.+++++++++|.+   ++||++++|+||||++.+|+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||+
T Consensus        78 ~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai  157 (193)
T cd03758          78 KAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEAL  157 (193)
T ss_pred             HHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHH
Confidence            99999999999754   259999999999997678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684         175 DFIKMGLSLAMARDYASGGLINIGVLENGKPME  207 (226)
Q Consensus       175 ~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~  207 (226)
                      +++.+||+.+.+||..++++++|.+|+++| +.
T Consensus       158 ~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g-~~  189 (193)
T cd03758         158 ELMKKCIKELKKRFIINLPNFTVKVVDKDG-IR  189 (193)
T ss_pred             HHHHHHHHHHHHhccccCCceEEEEEcCCC-eE
Confidence            999999999999999999999999999999 64

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0176|consensus

Probab=100.00  E-value=3.5e-46  Score=290.00  Aligned_cols=207  Identities=22%  Similarity=0.321  Sum_probs=193.9

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|++.|+|.|||+.++|||||+++|+++ .+..+.+..||++|++||+|++||+.+|++.++++.|.++++|.  
T Consensus        25 EYa-ieAikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~--  100 (241)
T KOG0176|consen   25 EYA-IEAIKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHW--  100 (241)
T ss_pred             hhH-HHHHhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhce--
Confidence            456 88999999999999999999999999999 68889999999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhc----------cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHH
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSN----------EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYI  156 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~----------~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~  156 (226)
                        +.|+++|+++.+.+.++++--++          +|||||++|+||+|. .||+||+.||+|++..+++-|+|||++-+
T Consensus       101 --f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~~~AKAIGSgsEga  177 (241)
T KOG0176|consen  101 --FTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIRYKAKAIGSGSEGA  177 (241)
T ss_pred             --eecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEEecceeccccchHH
Confidence              99999999999999999876654          479999999999997 79999999999999999999999999999


Q ss_pred             HHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684         157 LGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       157 ~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~  223 (226)
                      .+.|++.|+++++++||+.+++..|+..++... ...++++.++++.|.  ++.+++||++.++.++
T Consensus       178 ~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl-~~~Nvev~~vt~e~~--f~~~t~EE~~~~i~~~  241 (241)
T KOG0176|consen  178 ESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKL-NSNNVEVAVVTPEGE--FHIYTPEEVEQVIKRL  241 (241)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhc-CccceEEEEEcccCc--eEecCHHHHHHHHhcC
Confidence            999999999999999999999999999998665 558999999999862  6789999999998764

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=100.00  E-value=6.1e-45  Score=293.41  Aligned_cols=185  Identities=52%  Similarity=0.928  Sum_probs=179.5

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      +|+|||+++||||||+|+|.++|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+    .++++++++
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~----~~~~~~~~~   76 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHS----IELGEPPLV   76 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhH----HhhCCCCCH
Confidence            6899999999999999999999988888999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI  177 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la  177 (226)
                      +.+++++++++|.+|+||++++|+||||++.+|+||.+||.|++.+++++++|+|+.+++++|++.|+++||++||++++
T Consensus        77 ~~~a~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~  156 (188)
T cd03762          77 KTAASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFV  156 (188)
T ss_pred             HHHHHHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence            99999999999999999999999999997678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684         178 KMGLSLAMARDYASGGLINIGVLENGKPME  207 (226)
Q Consensus       178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~  207 (226)
                      ++||+.+.+||..+++.++|++|+++| +.
T Consensus       157 ~~al~~~~~rd~~~~~~~~i~~i~~~g-~~  185 (188)
T cd03762         157 KNALSLAMSRDGSSGGVIRLVIITKDG-VE  185 (188)
T ss_pred             HHHHHHHHHhccccCCCEEEEEECCCC-EE
Confidence            999999999999999999999999999 64

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=100.00  E-value=5e-45  Score=295.99  Aligned_cols=187  Identities=19%  Similarity=0.275  Sum_probs=177.4

Q ss_pred             CCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHH-hhhhccccccCCC
Q psy8684          16 CGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHID-LDVAYGYREMNEP   94 (226)
Q Consensus        16 ~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~   94 (226)
                      .|+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++++++|..+|++.+++++|.+++ .++    ++++.+
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~----~~~~~~   76 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDEC----LDDGHS   76 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHH----HhCCCC
Confidence            489999999999999999999998899999999999999999999999999999999999999986 566    778999


Q ss_pred             CCHHHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcC--CCC
Q psy8684          95 PLVYRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA--NMK  169 (226)
Q Consensus        95 ~~~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~--~~s  169 (226)
                      ++++.++++++++++.++   +||++++|+||||++++|+||++||.|++.+++++|+|+|+.+++++||+.|++  +||
T Consensus        77 ~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms  156 (197)
T cd03760          77 LSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLT  156 (197)
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCC
Confidence            999999999999988664   699999999999976789999999999999999999999999999999999999  999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684         170 KQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPME  207 (226)
Q Consensus       170 ~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~  207 (226)
                      .+||++++.+||+.+.+||..+++.++|++|+++| +.
T Consensus       157 ~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~  193 (197)
T cd03760         157 EEEARALIEECMKVLYYRDARSINKYQIAVVTKEG-VE  193 (197)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCceEEEEECCCC-EE
Confidence            99999999999999999999999999999999999 64

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=100.00  E-value=8.6e-45  Score=291.82  Aligned_cols=183  Identities=28%  Similarity=0.481  Sum_probs=177.8

Q ss_pred             CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      |+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+    .+++++++
T Consensus         1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~   76 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYE----LRRGRPMS   76 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHH----HHHCCCCC
Confidence            78999999999999999999998899999999999999999999999999999999999999999999    89999999


Q ss_pred             HHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHH
Q psy8684          97 VYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECID  175 (226)
Q Consensus        97 ~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~  175 (226)
                      ++.+++++++++|.++ +||++++|+||||. .||+||.+||+|++.+++++|+|+|+.+++++|++.|+++||++||++
T Consensus        77 ~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~  155 (185)
T TIGR03634        77 VKALATLLSNILNSNRFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKK  155 (185)
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence            9999999999999875 59999999999997 689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684         176 FIKMGLSLAMARDYASGGLINIGVLENGK  204 (226)
Q Consensus       176 la~~~l~~~~~~d~~~~~~i~i~vi~~~g  204 (226)
                      ++.+||+.+.++|..++++++|++|+++|
T Consensus       156 l~~~~l~~~~~r~~~~~~~~~v~ii~~~g  184 (185)
T TIGR03634       156 LAVRAIKSAIERDVASGNGIDVAVITKDG  184 (185)
T ss_pred             HHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence            99999999999999999999999999988

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=100.00  E-value=3.5e-45  Score=302.43  Aligned_cols=200  Identities=24%  Similarity=0.329  Sum_probs=187.6

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|+++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++|++||..+|++.+.+.++.+++.|+  
T Consensus        20 eya-~~av~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~--   95 (224)
T TIGR03633        20 EYA-REAVKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINR--   95 (224)
T ss_pred             HHH-HHHHHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHH--
Confidence            356 88999999999999999999999999985 67777899999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        ++++++++++.+++++++++|.+     +|||++++|+||+|+ ++|+||.+||.|++.+++++|+|+|+.+++++|+
T Consensus        96 --~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~  172 (224)
T TIGR03633        96 --LTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLE  172 (224)
T ss_pred             --HHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHH
Confidence              99999999999999999998866     359999999999996 7899999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhh
Q psy8684         162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEE  215 (226)
Q Consensus       162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~e  215 (226)
                      +.|+++|+.+||++++++||..+.+ |..+++.++|++|+++| ..++.++++|
T Consensus       173 ~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g-~~~~~~~~~~  224 (224)
T TIGR03633       173 KEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVED-KKFRKLSVEE  224 (224)
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCC-CcEEECCCCC
Confidence            9999999999999999999999988 88889999999999998 5577888875

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=100.00  E-value=1.5e-44  Score=291.37  Aligned_cols=184  Identities=28%  Similarity=0.529  Sum_probs=178.7

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      +|+|||+|+||||||+|+|.+++.++..++.+|||+|+++++++++|..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHR----LNTGRKPRV   76 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence            6899999999999999999999988988999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI  177 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la  177 (226)
                      +.+++++++.+|.++.||++++|+||||+ .||+||.+||.|++.+++++|+|+|+.+++++|++.|+++||++||++++
T Consensus        77 ~~~a~~l~~~l~~~~~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~  155 (189)
T cd03763          77 VTALTMLKQHLFRYQGHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLV  155 (189)
T ss_pred             HHHHHHHHHHHHHcCCccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence            99999999999999899999999999997 67999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684         178 KMGLSLAMARDYASGGLINIGVLENGKPME  207 (226)
Q Consensus       178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~  207 (226)
                      .+||+.+.+||..++++++|++|+++| +.
T Consensus       156 ~~~l~~~~~rd~~~~~~~~v~ii~~~g-~~  184 (189)
T cd03763         156 CEAIEAGIFNDLGSGSNVDLCVITKDG-VE  184 (189)
T ss_pred             HHHHHHHHHhcCcCCCceEEEEEcCCc-EE
Confidence            999999999999999999999999999 64

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=100.00  E-value=1.2e-43  Score=285.84  Aligned_cols=182  Identities=25%  Similarity=0.458  Sum_probs=177.1

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      +|+|||+++||||||+|+|.++|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+    +.+++++++
T Consensus         1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYE----LRRGRPMSI   76 (188)
T ss_pred             CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHH----HHHCCCCCH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999    899999999


Q ss_pred             HHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      +.+++++++++|.++ +||++++|+||||+ ++|+||.+||+|++.+++++|+|+|+++++++|++.|+++|+++||+++
T Consensus        77 ~~l~~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l  155 (188)
T cd03764          77 KALATLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKL  155 (188)
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            999999999999875 59999999999998 7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVLENGK  204 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g  204 (226)
                      +++||+.+.+||..++++++|++++++|
T Consensus       156 ~~~~l~~~~~rd~~~~~~i~i~iv~~~g  183 (188)
T cd03764         156 AIRAIKSAIERDSASGDGIDVVVITKDG  183 (188)
T ss_pred             HHHHHHHHHhhcCCCCCcEEEEEECCCC
Confidence            9999999999999999999999999999

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=100.00  E-value=5.7e-44  Score=293.10  Aligned_cols=189  Identities=18%  Similarity=0.275  Sum_probs=178.8

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|+|++||..+|++.+.++++.+++.|+  
T Consensus        20 eya-~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~--   96 (213)
T cd03752          20 EYA-MEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYL--   96 (213)
T ss_pred             HhH-HHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHH--
Confidence            466 89999999999999999999999999999777667799999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        ++++++|+++.+++.++..+|.++     |||++++|++|||.+.||+||.+||+|++.+++++|+|+|+.+++++||
T Consensus        97 --~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le  174 (213)
T cd03752          97 --YSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLK  174 (213)
T ss_pred             --HHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHH
Confidence              999999999999999999887653     6999999999999757899999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                      +.|+++||++||++++.+||..+.+||..++.+++|.++
T Consensus       175 ~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~  213 (213)
T cd03752         175 QDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL  213 (213)
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence            999999999999999999999999999888899999874

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01912 proteasome_beta proteasome beta subunit

Probab=100.00  E-value=4.2e-43  Score=282.76  Aligned_cols=185  Identities=32%  Similarity=0.520  Sum_probs=178.9

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.+++..+..++.+|||+|++++++++||..+|++.+.++++.+++.|+    +.+++++++
T Consensus         1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYE----LRNGRELSV   76 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence            6899999999999999999999888778999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      +.+++++++++|++++ ||++++|+||||++++|+||.+||.|++.+++++|+|+++++++++|++.|+++||++||+++
T Consensus        77 ~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~  156 (189)
T cd01912          77 KAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVEL  156 (189)
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence            9999999999999986 999999999999767899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVLENGKPME  207 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~  207 (226)
                      +.+||..+.++|..++++++|++|+++| +.
T Consensus       157 ~~~~l~~~~~~d~~~~~~~~v~vi~~~g-~~  186 (189)
T cd01912         157 VKKAIDSAIERDLSSGGGVDVAVITKDG-VE  186 (189)
T ss_pred             HHHHHHHHHHhcCccCCcEEEEEECCCC-EE
Confidence            9999999999999999999999999999 63

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=100.00  E-value=6.5e-43  Score=289.24  Aligned_cols=191  Identities=16%  Similarity=0.220  Sum_probs=172.3

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeec----CeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKIS----DNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE   93 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   93 (226)
                      |-+|||+++||||||+|+|.+.+ ++..++.+||++|+    +||+|+.||..+|++.+++++|.+++.|+    +++|+
T Consensus         1 ~~~vGIk~kdGVVLaadkr~~~~-l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~----~~~g~   75 (236)
T cd03765           1 TYCLGIKLDAGLVFASDSRTNAG-VDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPE----ETNLL   75 (236)
T ss_pred             CeEEEEEeCCeEEEEEccCccCC-CccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhH----HhhCC
Confidence            46899999999999999998876 44445799999998    89999999999999999999999999999    99999


Q ss_pred             -CCCHHHHHHHHHHHHHhc-----------cCCceeEEEEEEEeCCCCeEEEEECCCCceeee----eeEEecCChHHHH
Q psy8684          94 -PPLVYRAANLFQKIFRSN-----------EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ----NCAVGGSGSSYIL  157 (226)
Q Consensus        94 -~~~~~~~a~~l~~~~~~~-----------~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~----~~~a~Gsg~~~~~  157 (226)
                       +++++.+|+.+++++++.           .+||++++|+||||++.||+||.+||+|++.++    +|+|+|+ +.+++
T Consensus        76 ~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~  154 (236)
T cd03765          76 NAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGK  154 (236)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhH
Confidence             799999999999986651           379999999999996578999999999999988    6789995 69999


Q ss_pred             HHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEE---EEeChhh
Q psy8684         158 GYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEK---LVFTQEE  215 (226)
Q Consensus       158 ~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~---~~l~~~e  215 (226)
                      ++||+.|+++||++||++++++||..+.++|..++++|+|++|+++| +..   +.+..+|
T Consensus       155 ~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G-~~~~~~~~~~~~~  214 (236)
T cd03765         155 PILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDS-LQVGHYRRIEEDD  214 (236)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCC-eeeeeeEEecCCC
Confidence            99999999999999999999999999999999999999999999998 544   3355444

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=100.00  E-value=2.5e-43  Score=288.12  Aligned_cols=185  Identities=16%  Similarity=0.281  Sum_probs=173.9

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|+++|+|+|||+++||||||+|+|.+. .++.++..+||++|++|+++++||+++|++.+.++++.+++.|+  
T Consensus        18 eya-~~av~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~--   93 (207)
T cd03755          18 EYA-QEAVRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHR--   93 (207)
T ss_pred             HHH-HHHHHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHH--
Confidence            466 89999999999999999999999999776 56777789999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        ++++++++++.+++++++++|.++     |||++++|++|||++++|+||.+||+|++.+++++|+|+|+.+++++||
T Consensus        94 --~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le  171 (207)
T cd03755          94 --LTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLE  171 (207)
T ss_pred             --HHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHH
Confidence              999999999999999999998763     5999999999999767999999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                      +.|+++|+.+||++++++||..+.+   .++.++||+++
T Consensus       172 ~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~  207 (207)
T cd03755         172 KNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM  207 (207)
T ss_pred             hhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence            9999999999999999999999987   57789999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=100.00  E-value=2.5e-43  Score=288.88  Aligned_cols=187  Identities=14%  Similarity=0.152  Sum_probs=174.5

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|+++|+|+|||+++||||||+|+|.++ .+...++.+||++|++|++++++|.++|++.+.++++.+++.|+  
T Consensus        21 eya-~~a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~--   96 (212)
T cd03751          21 EYA-NKAVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYR--   96 (212)
T ss_pred             HHH-HHHHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHH--
Confidence            356 89999999999999999999999999987 66666789999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        ++++++++++.+++.+++++|.+     .|||++++|++|||+ +||+||.+||+|++.+++++|+|+|+.+++++||
T Consensus        97 --~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Le  173 (212)
T cd03751          97 --DNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELE  173 (212)
T ss_pred             --HHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHH
Confidence              99999999999999999988875     369999999999997 6899999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                      +.|+++||++||+++++++|..+.+.+...+.+|||.++
T Consensus       174 k~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~  212 (212)
T cd03751         174 KLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV  212 (212)
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence            999999999999999999999999866567788998764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=100.00  E-value=5.7e-43  Score=289.05  Aligned_cols=202  Identities=13%  Similarity=0.236  Sum_probs=181.4

Q ss_pred             CCCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhh
Q psy8684           6 PDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVA   85 (226)
Q Consensus         6 ~~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   85 (226)
                      ++|+ .+|+++|+|+|||+++||||||+|++.        ++.+||++|++||+|+++|+.+|++.++++++.+++.|+ 
T Consensus        17 ~EYA-~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~-   86 (228)
T TIGR03691        17 AELA-RKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRG-   86 (228)
T ss_pred             HHHH-HHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHh-
Confidence            4677 899999999999999999999999962        357899999999999999999999999999999999999 


Q ss_pred             ccccccC-CCCCHHHHHHHHHHHHHh----ccCCceeEEEEEEEeC-CCCeEEEEECCCCceeeee-eEEecCChHHHHH
Q psy8684          86 YGYREMN-EPPLVYRAANLFQKIFRS----NEGSFKAAIIIAGWDT-VKGGQVYALPASGVLTRQN-CAVGGSGSSYILG  158 (226)
Q Consensus        86 ~~~~~~~-~~~~~~~~a~~l~~~~~~----~~~p~~v~~liaG~d~-~~~p~ly~id~~G~~~~~~-~~a~Gsg~~~~~~  158 (226)
                         +.++ .+++++.+|+.+++.+..    ..|||+|++|++|||+ +.||+||.+||+|++.+++ ++|+|+|++.+++
T Consensus        87 ---~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~  163 (228)
T TIGR03691        87 ---YSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIAT  163 (228)
T ss_pred             ---hhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHH
Confidence               8887 689999999988887654    3589999999999985 4689999999999999865 8999999999999


Q ss_pred             HHhhhhcCCCCHHHHHHHHHHHHHHHH--hcccCCCCcEEEEEEcCCC-CeEEEEeChhhHhhHh
Q psy8684         159 YVDKEWRANMKKQECIDFIKMGLSLAM--ARDYASGGLINIGVLENGK-PMEKLVFTQEEVQHFF  220 (226)
Q Consensus       159 ~Le~~~~~~~s~~eai~la~~~l~~~~--~~d~~~~~~i~i~vi~~~g-~~~~~~l~~~ei~~~~  220 (226)
                      +||+.|+++||.+||++++++||..+.  +++..++.++||.++++++ ...++.|+++||++++
T Consensus       164 ~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l  228 (228)
T TIGR03691       164 ALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL  228 (228)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence            999999999999999999999999995  4566888999999999753 1347899999999875

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=100.00  E-value=7.4e-43  Score=286.14  Aligned_cols=187  Identities=23%  Similarity=0.344  Sum_probs=177.1

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|+++|+|+|||+++||||||+|+|.+. .++..++.+||++|++++++++||+.+|++.+.++++.+++.|+  
T Consensus        19 eya-~~av~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~--   94 (211)
T cd03756          19 EYA-REAVKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHR--   94 (211)
T ss_pred             HHH-HHHHHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH--
Confidence            566 89999999999999999999999999985 67777899999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        ++++++++++.+++.+++.+|.++     |||++++|+||||+ .+|+||.+||.|++.+++++|+|+|+++++++|+
T Consensus        95 --~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le  171 (211)
T cd03756          95 --LTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLE  171 (211)
T ss_pred             --HHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHH
Confidence              999999999999999999988763     49999999999997 6899999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q psy8684         162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLE  201 (226)
Q Consensus       162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~  201 (226)
                      +.|+++|+++||++++.+||..+.++|. ++..++|++|+
T Consensus       172 ~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~  210 (211)
T cd03756         172 KEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT  210 (211)
T ss_pred             hhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence            9999999999999999999999998876 88999999986

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=100.00  E-value=8.1e-43  Score=285.83  Aligned_cols=186  Identities=17%  Similarity=0.213  Sum_probs=173.4

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|+++|+|+|||+++||||||+|+|.+++ +  .+..+||++|+++++|++||+.+|++.+.++++.+++.|+  
T Consensus        18 eya-~~av~~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~--   91 (211)
T cd03749          18 EYA-MEAVKQGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYR--   91 (211)
T ss_pred             HHH-HHHHhcCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHH--
Confidence            355 789999999999999999999999998774 3  4567999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        ++++++++++.+++.+++.+|.+     +|||++++|++|||. .||+||.+||+|++.+++++|+|+|++.++++||
T Consensus        92 --~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le  168 (211)
T cd03749          92 --FVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSIGARSQSARTYLE  168 (211)
T ss_pred             --HHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHH
Confidence              99999999999999999988764     469999999999997 6899999999999999999999999999999999


Q ss_pred             hhhc--CCCCHHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEc
Q psy8684         162 KEWR--ANMKKQECIDFIKMGLSLAMARDY-ASGGLINIGVLE  201 (226)
Q Consensus       162 ~~~~--~~~s~~eai~la~~~l~~~~~~d~-~~~~~i~i~vi~  201 (226)
                      +.|+  ++|+++|++++++++|+.+..+|. .++.+|||++|+
T Consensus       169 ~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~  211 (211)
T cd03749         169 RHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG  211 (211)
T ss_pred             HhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence            9998  699999999999999999999886 788999999984

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=100.00  E-value=1.4e-42  Score=284.83  Aligned_cols=186  Identities=23%  Similarity=0.314  Sum_probs=174.3

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+++++|+|+|||+++||||||+|+|.+. .+...++.+||+.|+++++|++||+.+|++.+.+.++.+++.|+  
T Consensus        18 eya-~~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~--   93 (213)
T cd03753          18 EYA-IEAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHR--   93 (213)
T ss_pred             HHH-HHHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH--
Confidence            466 89999999999999999999999999986 56667889999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcc----------CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHH
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNE----------GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYI  156 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~----------~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~  156 (226)
                        ++++++++++.+++.+++++|.++          +||++++|+||||+ .||+||.+||+|++.+++++|+|+|++++
T Consensus        94 --~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~  170 (213)
T cd03753          94 --FTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGA  170 (213)
T ss_pred             --HHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHH
Confidence              999999999999999999998753          69999999999997 78999999999999999999999999999


Q ss_pred             HHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         157 LGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       157 ~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                      +++|++.|+++|+++||++++++||+.+.+++ .++..+||+++
T Consensus       171 ~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~  213 (213)
T cd03753         171 QSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV  213 (213)
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence            99999999999999999999999999998765 67789999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=100.00  E-value=1.6e-42  Score=283.79  Aligned_cols=187  Identities=21%  Similarity=0.320  Sum_probs=176.2

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+++++|+|+||++++||||||+|+|.+.+ ++..++.+||++|++++++++||..+|++.+.+.++..++.|+  
T Consensus        18 eya-~~~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~--   93 (209)
T cd01911          18 EYA-LEAVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYR--   93 (209)
T ss_pred             HHH-HHHHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHH--
Confidence            355 789999999999999999999999999874 6667899999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        .++|++++++.+|++++++++.+     .|||++++|++|||++++|+||.+||.|++.+++++++|+|+.+++++|+
T Consensus        94 --~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~  171 (209)
T cd01911          94 --YTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLE  171 (209)
T ss_pred             --HHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHH
Confidence              89999999999999999998755     35999999999999866999999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                      +.|+++|+.+||++++.+||..+.++|. ++..++++++
T Consensus       172 ~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~  209 (209)
T cd01911         172 KRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV  209 (209)
T ss_pred             HhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence            9999999999999999999999999998 8999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=100.00  E-value=4e-42  Score=282.44  Aligned_cols=187  Identities=17%  Similarity=0.239  Sum_probs=172.6

Q ss_pred             CCCCCccccC-CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhh
Q psy8684           7 DISAGTEVTC-GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVA   85 (226)
Q Consensus         7 ~~~~~~ai~~-gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   85 (226)
                      +|+ .+|+++ |+|+|||+++||||||+|+|.+.+ ++..+..+||++|+++++|++||+.+|++.+.+++|.+++.|+ 
T Consensus        19 eya-~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~-   95 (215)
T cd03754          19 EYA-FKAVKNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFK-   95 (215)
T ss_pred             HhH-HHHHhcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHH-
Confidence            466 899875 889999999999999999999874 5555688999999999999999999999999999999999999 


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHH
Q psy8684          86 YGYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYV  160 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~L  160 (226)
                         ++++++++++.+|+.+++++|.+     .|||++++|+||||++++|+||.+||+|++.+++++|+|+|+..++++|
T Consensus        96 ---~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~L  172 (215)
T cd03754          96 ---YKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFL  172 (215)
T ss_pred             ---HHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHH
Confidence               99999999999999999987655     2599999999999976799999999999999999999999999999999


Q ss_pred             hhhhcCC--C--CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         161 DKEWRAN--M--KKQECIDFIKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       161 e~~~~~~--~--s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                      |+.|+++  |  |.+||++++++||..+.++|.. +..+||.++
T Consensus       173 e~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~  215 (215)
T cd03754         173 EKKLKKKPDLIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV  215 (215)
T ss_pred             HHHhccccccCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence            9999985  7  9999999999999999999964 899999874

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0178|consensus

Probab=100.00  E-value=2e-42  Score=271.52  Aligned_cols=211  Identities=16%  Similarity=0.230  Sum_probs=198.0

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+++.+.+|+|||.++||||||++++.++..+-.+.+.+||++|+|+|+|+++|+++|+..|++++|..+|+|.   
T Consensus        23 yA-meais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl---   98 (249)
T KOG0178|consen   23 YA-MEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYL---   98 (249)
T ss_pred             HH-HHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHH---
Confidence            45 78899999999999999999999999999877788899999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       +++|+++|++.+...++++.|.|+     ||||||+|.+|||...|.+||+.||+|++..|++.|+|.++..+++.|+.
T Consensus        99 -~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkq  177 (249)
T KOG0178|consen   99 -FRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQ  177 (249)
T ss_pred             -HHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHh
Confidence             999999999999999999999885     69999999999999889999999999999999999999999999999999


Q ss_pred             hhcCC-CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-CeEEEEeChhhHhhHhhcc
Q psy8684         163 EWRAN-MKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK-PMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       163 ~~~~~-~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g-~~~~~~l~~~ei~~~~~~~  223 (226)
                      .|+.+ ++++||..+|++.|..+.+.+..+...+|+..++++. +...++++++||..+++..
T Consensus       178 dykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~  240 (249)
T KOG0178|consen  178 DYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKY  240 (249)
T ss_pred             hhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHh
Confidence            99866 5699999999999999999998889999999999975 3457789999999998765

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=100.00  E-value=2.9e-41  Score=271.89  Aligned_cols=183  Identities=26%  Similarity=0.375  Sum_probs=168.4

Q ss_pred             ccCCceEEEEEeCCeEEEEEeCCccCCceeeecc-cCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684          14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNRE-AEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN   92 (226)
Q Consensus        14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   92 (226)
                      |++|+|+|||+++|||+||+|+|.+.|..+..++ .+||++|++|+++++||..+|++.+.++++.+++.|+    +.++
T Consensus         1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~----~~~~   76 (190)
T PF00227_consen    1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYR----FSYG   76 (190)
T ss_dssp             HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHHS
T ss_pred             CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhh----hccC
Confidence            5789999999999999999999999887775666 6999999999999999999999999999999999999    9999


Q ss_pred             CCCCHHHHHHHHHHHHH----h-ccCCceeEEEEEEEeCCCCeEEEEECCCCceeee-eeEEecCChHHHHHHHhhhhcC
Q psy8684          93 EPPLVYRAANLFQKIFR----S-NEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ-NCAVGGSGSSYILGYVDKEWRA  166 (226)
Q Consensus        93 ~~~~~~~~a~~l~~~~~----~-~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~-~~~a~Gsg~~~~~~~Le~~~~~  166 (226)
                      .+++++.+++.+.+.++    . +++|+++++|+||||++++|+||.+||+|++.++ +++|+|+|+++++++|++.|++
T Consensus        77 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~  156 (190)
T PF00227_consen   77 RPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKP  156 (190)
T ss_dssp             SGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTT
T ss_pred             ccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccC
Confidence            99999955555554443    3 3579999999999998677999999999999999 6999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         167 NMKKQECIDFIKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       167 ~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                      +|+++||++++++||+.+.++|..+++++++++|
T Consensus       157 ~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi  190 (190)
T PF00227_consen  157 DLSLEEAIELALKALKEAIDRDILSGDNIEVAVI  190 (190)
T ss_dssp             TSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence            9999999999999999999999999999999986

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=100.00  E-value=4.5e-41  Score=269.00  Aligned_cols=179  Identities=31%  Similarity=0.477  Sum_probs=172.4

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      +|+|||+++||||||+|+|.+++.....++.+|||.|+++++++++|..+|++.+.++++.++..|+    +++++++++
T Consensus         1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYR----LRYGEPIPV   76 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence            6899999999999999999999877778999999999999999999999999999999999999999    899999999


Q ss_pred             HHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHH
Q psy8684          98 YRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECI  174 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai  174 (226)
                      +.+++.+++++|.++   +||++++|+||||.+++|+||.+||.|++.+++++|+|+|+.+++++|++.|+++||.+||+
T Consensus        77 ~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~  156 (182)
T cd01906          77 EALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAI  156 (182)
T ss_pred             HHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHH
Confidence            999999999999987   79999999999997679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         175 DFIKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       175 ~la~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                      +++++||..+.++|..++.++++.++
T Consensus       157 ~l~~~~l~~~~~~~~~~~~~~~i~ii  182 (182)
T cd01906         157 ELALKALKSALERDLYSGGNIEVAVI  182 (182)
T ss_pred             HHHHHHHHHHHcccCCCCCCEEEEEC
Confidence            99999999999999989999999875

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>KOG0174|consensus

Probab=100.00  E-value=1.3e-41  Score=263.84  Aligned_cols=207  Identities=49%  Similarity=0.885  Sum_probs=199.7

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      ...+..|||++|+.++|||||++|+|.+.|.++.++..+||.+|.|+|+||-||.++|.|.+.+.++.++..|.    ..
T Consensus        13 ~~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~----~q   88 (224)
T KOG0174|consen   13 KEEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYT----IQ   88 (224)
T ss_pred             ccccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhh----hh
Confidence            44589999999999999999999999999999999999999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCH
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKK  170 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~  170 (226)
                      .++++++...|+.+++++|++|..+.+.+|+||||+..|.++|.+.-.|...+.++...|||+.+++++++..|+++|++
T Consensus        89 ~~~~p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~  168 (224)
T KOG0174|consen   89 ENKPPLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTL  168 (224)
T ss_pred             cCCCchHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCH
Confidence            99999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684         171 QECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNH  222 (226)
Q Consensus       171 ~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~  222 (226)
                      ||++++..+|+..|.+||-.+|+.|.+.+|+++| +.++.+.++++..+..+
T Consensus       169 EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~G-ver~~~~~d~~~~~~v~  219 (224)
T KOG0174|consen  169 EECVRFVKNAVSLAIERDGSSGGVIRLVIINKAG-VERRFFPGDKLGQFAVE  219 (224)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCC-ceEEEecCCcccccccc
Confidence            9999999999999999999999999999999999 99999999998876544

>KOG0183|consensus

Probab=100.00  E-value=6e-41  Score=263.74  Aligned_cols=207  Identities=16%  Similarity=0.283  Sum_probs=193.1

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ ++|+.+|+|+||++++|+|||+.+++... .+.+.+...||..+++|++|+++|+.+|++.++++.|-+|+.|+  
T Consensus        21 EYA-qEAvrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShr--   96 (249)
T KOG0183|consen   21 EYA-QEAVRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHR--   96 (249)
T ss_pred             HhH-HHHHhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhh--
Confidence            467 99999999999999999999999998776 78888999999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        ++.+.+++++.++++++.+.|+|+     ||||++.|++|+|+++.|+||+++|+|.+++|.+.|+|.+++.++.+||
T Consensus        97 --lt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflE  174 (249)
T KOG0183|consen   97 --LTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLE  174 (249)
T ss_pred             --cccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHH
Confidence              999999999999999999999884     6999999999999988899999999999999999999999999999999


Q ss_pred             hhhcCC--CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         162 KEWRAN--MKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       162 ~~~~~~--~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      ++|..+  .+..++++|++++|......   .+.++++.|+++++.  ++.|..++|+.++.+|.
T Consensus       175 K~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~--~~~l~~~~I~~~v~~ie  234 (249)
T KOG0183|consen  175 KNYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKD--LKMLESEEIDDIVKEIE  234 (249)
T ss_pred             HhcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCc--eeecCHHHHHHHHHHHH
Confidence            999866  68899999999999999875   458999999999773  57899999999987763

>KOG0179|consensus

Probab=100.00  E-value=3.2e-38  Score=247.59  Aligned_cols=203  Identities=26%  Similarity=0.346  Sum_probs=188.3

Q ss_pred             CCCCCCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHh
Q psy8684           3 PNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDL   82 (226)
Q Consensus         3 ~~~~~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~   82 (226)
                      |.-++|+ +. ..+|+|+|||.+.|++|+|+|+|.++|..+.++.++|||+++|+++++.+|.++|+..|...++...+.
T Consensus        17 ~~~~~f~-PY-~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~   94 (235)
T KOG0179|consen   17 MDHERFS-PY-EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQ   94 (235)
T ss_pred             cccccCC-cc-ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHH
Confidence            4467888 44 457778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccccCCCCCHHHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          83 DVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                      |+    .++...|++..+|++|+.++|..|+ ||.+..++||+|+++++.+|.+||.|++.+..+.|.|+++.+++++|+
T Consensus        95 Y~----~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLD  170 (235)
T KOG0179|consen   95 YE----HDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLD  170 (235)
T ss_pred             Hh----hcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhh
Confidence            99    9999999999999999999998885 999999999999989999999999999999999999999999999999


Q ss_pred             hhhc-----------CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeC
Q psy8684         162 KEWR-----------ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT  212 (226)
Q Consensus       162 ~~~~-----------~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~  212 (226)
                      +...           +.+++++|+.++.+++..|.+||..+|+.++|++++++| +..+.++
T Consensus       171 nQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~g-V~~e~~~  231 (235)
T KOG0179|consen  171 NQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDG-VEVETLP  231 (235)
T ss_pred             hhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCC-EEEEeee
Confidence            7642           246899999999999999999999999999999999999 8776554

>KOG0175|consensus

Probab=100.00  E-value=7.7e-39  Score=257.91  Aligned_cols=201  Identities=26%  Similarity=0.442  Sum_probs=192.8

Q ss_pred             ccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684          14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE   93 (226)
Q Consensus        14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   93 (226)
                      +.+|||++|+++++||++|+|+|.+.|.+|-+...+||.+|+++.+-.++|-++|++++-+.+..+|..|+    +++++
T Consensus        68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~e----LRnke  143 (285)
T KOG0175|consen   68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHE----LRNKE  143 (285)
T ss_pred             ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHH----HhcCc
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999    99999


Q ss_pred             CCCHHHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHH
Q psy8684          94 PPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQE  172 (226)
Q Consensus        94 ~~~~~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~e  172 (226)
                      .|+|...++.|++++++|+. -+.+..+|+|||. .||.||.+|..|+....+-.++|||+.+|+++|++.|+++|+.+|
T Consensus       144 riSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eE  222 (285)
T KOG0175|consen  144 RISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEE  222 (285)
T ss_pred             ceehHHHHHHHHHHHhhccCcchhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHH
Confidence            99999999999999999986 5889999999998 899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684         173 CIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNH  222 (226)
Q Consensus       173 ai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~  222 (226)
                      |.+|+++++..|..||..+|+.+.+++|+.|| ..  .+.+.|+.+++.+
T Consensus       223 A~~L~rrAI~hAThRDaySGG~vnlyHv~edG-W~--~v~~~Dv~~L~~~  269 (285)
T KOG0175|consen  223 AYDLARRAIYHATHRDAYSGGVVNLYHVKEDG-WV--KVSNTDVSELHYH  269 (285)
T ss_pred             HHHHHHHHHHHHHhcccccCceEEEEEECCcc-ce--ecCCccHHHHHHH
Confidence            99999999999999999999999999999999 54  4789999888443

>KOG0181|consensus

Probab=100.00  E-value=3.4e-39  Score=250.50  Aligned_cols=205  Identities=19%  Similarity=0.309  Sum_probs=192.1

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      ++ ..|+.+|.+.|||+-.||||||++++..+ .+....+.+|++.|.+||+|..||+.+|++.+++..|..++.|.   
T Consensus        24 yA-L~Av~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy---   98 (233)
T KOG0181|consen   24 YA-LTAVVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYY---   98 (233)
T ss_pred             HH-HHHHhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHH---
Confidence            44 67899999999999999999999998777 67778899999999999999999999999999999999999998   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       ..|++++|+..+.+.++..+|+|+     ||||+++++||||. ++|.||++||+|++..|+++|.|.+...+..+||+
T Consensus        99 -~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEk  176 (233)
T KOG0181|consen   99 -RVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEK  176 (233)
T ss_pred             -HHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhhhccCcchHHHHHHH
Confidence             899999999999999999999996     59999999999998 79999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684         163 EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       163 ~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~  223 (226)
                      +|+.++.+++++..|+..|+...+... +..++||.++..++   |+.|++.||+.+|.++
T Consensus       177 R~~edleldd~ihtailtlkE~fege~-~~~nieigv~~~~~---F~~lt~~eI~d~l~~l  233 (233)
T KOG0181|consen  177 RYNEDLELDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENG---FRRLTPAEIEDYLASL  233 (233)
T ss_pred             HhccccccchHHHHHHHHHHHHhcccc-ccCceEEEEecCCc---eeecCHHHHHHHHhcC
Confidence            999999999999999999999987654 67999999999766   7889999999999864

>KOG0173|consensus

Probab=100.00  E-value=6e-38  Score=252.22  Aligned_cols=193  Identities=28%  Similarity=0.536  Sum_probs=186.9

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      -+.++++.+.|||++|+.++||||+++|+|.|.|.++...+.+||+.+.++|+|+.+|.++|...+.+.+..+.+.|+  
T Consensus        27 g~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~--  104 (271)
T KOG0173|consen   27 GLKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHR--  104 (271)
T ss_pred             CCCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHH--
Confidence            355788999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcC
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA  166 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~  166 (226)
                        ++.++.++|..+-+++++.+.+|..-.++.++++|+|. .||+||++.|.|+....+|.+.|||+..++++||..|+|
T Consensus       105 --l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~  181 (271)
T KOG0173|consen  105 --LNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKP  181 (271)
T ss_pred             --hccCCCCceeeHHHHHHHHHHHhcCcccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCc
Confidence              99999999999999999999999999999999999999 799999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684         167 NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK  204 (226)
Q Consensus       167 ~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g  204 (226)
                      +|+.|||++|+.+|+.+.+..|..+|+++++|||++.+
T Consensus       182 dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~  219 (271)
T KOG0173|consen  182 DLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKG  219 (271)
T ss_pred             ccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence            99999999999999999999999999999999999766

>KOG0184|consensus

Probab=100.00  E-value=1.9e-37  Score=245.20  Aligned_cols=204  Identities=15%  Similarity=0.122  Sum_probs=182.1

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ +||+.+++|+|||+|+||||+++|+.+++ .+...++..||+.|++||+|+++|+.+|.+.+.+++|.++..|+  
T Consensus        25 eYA-~KAven~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~--  100 (254)
T KOG0184|consen   25 EYA-QKAVENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWR--  100 (254)
T ss_pred             HHH-HHHHhcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHH--
Confidence            356 89999999999999999999999999999 56677889999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        -+++.++|.+.+++.+.++.|-++     ||||++.++++||. +||+||.++|+|.+..+..+|+|.|.+.+...||
T Consensus       101 --~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElE  177 (254)
T KOG0184|consen  101 --KNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELE  177 (254)
T ss_pred             --HhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHH
Confidence              899999999999999999998775     69999999999996 8999999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhh
Q psy8684         162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQH  218 (226)
Q Consensus       162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~  218 (226)
                      +.--.+|+.+|+++.+.+.|..+.+......-.+|+.++.....-..+. -|.||.+
T Consensus       178 KL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~-vp~el~~  233 (254)
T KOG0184|consen  178 KLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEK-VPSELLE  233 (254)
T ss_pred             hcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCcccc-CcHHHHH
Confidence            9877899999999999999999987766666779999888642122333 3445543

>KOG0182|consensus

Probab=100.00  E-value=2.2e-36  Score=237.59  Aligned_cols=212  Identities=15%  Similarity=0.201  Sum_probs=199.2

Q ss_pred             CCCCCccccC-CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhh
Q psy8684           7 DISAGTEVTC-GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVA   85 (226)
Q Consensus         7 ~~~~~~ai~~-gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   85 (226)
                      +|+ -||+++ |-|+||++++|++|+++.++.+. .++.++....+|+|+.+|+|+++|..+|++..+.++|.++.+++ 
T Consensus        26 EYa-fkAin~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~-  102 (246)
T KOG0182|consen   26 EYA-FKAINQAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFR-  102 (246)
T ss_pred             ehH-HHHhhcCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhh-
Confidence            455 789998 88999999999999999998887 78888999999999999999999999999999999999999999 


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHH
Q psy8684          86 YGYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYV  160 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~L  160 (226)
                         +.+|.+||++.|++.+.++-|.|+     ||+|+.+++.|+|++.||.+|.+||.|.+..+++.|.|-....+.++|
T Consensus       103 ---yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfL  179 (246)
T KOG0182|consen  103 ---YKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFL  179 (246)
T ss_pred             ---hhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHH
Confidence               999999999999999999988774     699999999999998899999999999999999999999999999999


Q ss_pred             hhhhcCC--CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCCC
Q psy8684         161 DKEWRAN--MKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEATF  226 (226)
Q Consensus       161 e~~~~~~--~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~~  226 (226)
                      |+.|+++  .|.+|++++++.||..+..-|..+ ..+||.+++++. .+++.|+.+||+++|..||+.
T Consensus       180 EKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~-se~EVgvv~~~~-p~f~~Ls~~eie~hL~~IAEk  245 (246)
T KOG0182|consen  180 EKKYKKDIDLTFEETVETAISALQSSLGIDFKS-SELEVGVVTVDN-PEFRILSAEEIEEHLQAIAEK  245 (246)
T ss_pred             HHhhccCccchHHHHHHHHHHHHHHHHhcccCC-cceEEEEEEcCC-cceeeccHHHHHHHHHHhhhc
Confidence            9999987  679999999999999999888754 889999999988 778999999999999999974

>KOG0177|consensus

Probab=100.00  E-value=1.4e-36  Score=234.98  Aligned_cols=186  Identities=19%  Similarity=0.292  Sum_probs=179.0

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      .+++||++.|+|++|+|+..+++.++..++.+|++.|+++++|+++|..+|+..+.+++.+.++.|+    +++|.+++|
T Consensus         2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYk----irnGyeLSp   77 (200)
T KOG0177|consen    2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYK----IRNGYELSP   77 (200)
T ss_pred             ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHh----hhcCCcCCH
Confidence            4789999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhc---cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHH
Q psy8684          98 YRAANLFQKIFRSN---EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECI  174 (226)
Q Consensus        98 ~~~a~~l~~~~~~~---~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai  174 (226)
                      ..+|++.++.+..+   |+||.|++|+||+|+..||.||++|..|+..+.++++.|.|+.+..++|++.|+|+||.+||+
T Consensus        78 ~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~  157 (200)
T KOG0177|consen   78 SAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEAL  157 (200)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHH
Confidence            99999999988876   459999999999999889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEE
Q psy8684         175 DFIKMGLSLAMARDYASGGLINIGVLENGKPMEK  208 (226)
Q Consensus       175 ~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~  208 (226)
                      ++..+|+.++.+|-...-.++.+.+|+||| +++
T Consensus       158 ~lmkKCv~El~kRlvin~~~f~v~IVdkdG-ir~  190 (200)
T KOG0177|consen  158 DLMKKCVLELKKRLVINLPGFIVKIVDKDG-IRK  190 (200)
T ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEcCCC-cee
Confidence            999999999999988878899999999999 754

>KOG0180|consensus

Probab=100.00  E-value=4.2e-35  Score=223.59  Aligned_cols=194  Identities=19%  Similarity=0.253  Sum_probs=185.3

Q ss_pred             ccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684          14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE   93 (226)
Q Consensus        14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   93 (226)
                      ..+|+++||+++++||.||+|.|........+.+.+|||++.++++++.+|++.|.+.+.++++...+.|+    ++.++
T Consensus         5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~----lre~R   80 (204)
T KOG0180|consen    5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYE----LREER   80 (204)
T ss_pred             eecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHH----hhhhc
Confidence            35899999999999999999999988788889999999999999999999999999999999999999999    99999


Q ss_pred             CCCHHHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCcee-eeeeEEecCChHHHHHHHhhhhcCCCCHH
Q psy8684          94 PPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLT-RQNCAVGGSGSSYILGYVDKEWRANMKKQ  171 (226)
Q Consensus        94 ~~~~~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~  171 (226)
                      .|.|+.++++++.++|+.|. ||.+..++||.|++++|+|...|..|... ..+|+++|.+++..++++|+.|+|+|..+
T Consensus        81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd  160 (204)
T KOG0180|consen   81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD  160 (204)
T ss_pred             ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence            99999999999999999886 99999999999998999999999999886 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeC
Q psy8684         172 ECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT  212 (226)
Q Consensus       172 eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~  212 (226)
                      +.++.+..+|..+.+||..+|+...+.+|+||. +++|.++
T Consensus       161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdk-v~~r~lK  200 (204)
T KOG0180|consen  161 ELFETISQALLNAVDRDALSGWGAVVYIITKDK-VTKRTLK  200 (204)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCCeEEEEEccch-hhhhhhh
Confidence            999999999999999999999999999999998 8776654

>KOG0863|consensus

Probab=100.00  E-value=7.1e-35  Score=231.72  Aligned_cols=203  Identities=19%  Similarity=0.272  Sum_probs=185.0

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+|+++|++.||++.++-.||++-+|..+ .+  ++.++||++|++|++++++|+++|.+.|.++++.+|..++   
T Consensus        24 ya-~EavkqGsatVGLks~thaVLvAl~r~~s-eL--ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~---   96 (264)
T KOG0863|consen   24 YA-MEAVKQGSATVGLKSRTHAVLVALKRAQS-EL--SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSR---   96 (264)
T ss_pred             HH-HHHHhcccceEeecccceEEEeeeccchh-HH--HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhh---
Confidence            45 78999999999999999999999888776 33  6789999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       +.+++++|+..+...+.+.+|..     ||||||.++++|||+ .||+||.++|+|++.++...+||+.++.++.+||+
T Consensus        97 -~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr  174 (264)
T KOG0863|consen   97 -FIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLER  174 (264)
T ss_pred             -hccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEEeeeecccchhhHHHHHHH
Confidence             99999999999999998877743     679999999999998 79999999999999999999999999999999999


Q ss_pred             hhc--CCCCHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684         163 EWR--ANMKKQECIDFIKMGLSLAMARD-YASGGLINIGVLENGKPMEKLVFTQEEVQHFFN  221 (226)
Q Consensus       163 ~~~--~~~s~~eai~la~~~l~~~~~~d-~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~  221 (226)
                      +..  .+++.+|.|..+++||+.+...| ..++.+++|+|+.||.+  +..+..+++.+++.
T Consensus       175 ~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p--f~~~d~~~~~k~~~  234 (264)
T KOG0863|consen  175 NLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP--FTILDQKDVAKYVD  234 (264)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc--eEeecHHHHHHHHH
Confidence            875  68999999999999999999644 57889999999999974  56899999887653

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=100.00  E-value=5.5e-34  Score=225.39  Aligned_cols=166  Identities=18%  Similarity=0.242  Sum_probs=149.0

Q ss_pred             CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEee-cCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCC
Q psy8684          17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKI-SDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPP   95 (226)
Q Consensus        17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   95 (226)
                      |||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..+|++.|.++++.+++.|+    ...    
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~----~~~----   72 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQ----GNL----   72 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHcc----Ccc----
Confidence            79999999999999999999999999999999999999 999999999999999999999999999987    422    


Q ss_pred             CHHHHHHHHHHHH-HhccCCceeEEEEEEEeCCCCeEEEEECCCCceeee--eeEEecCChHHHHHHHhhhhc-CCCCHH
Q psy8684          96 LVYRAANLFQKIF-RSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ--NCAVGGSGSSYILGYVDKEWR-ANMKKQ  171 (226)
Q Consensus        96 ~~~~~a~~l~~~~-~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~--~~~a~Gsg~~~~~~~Le~~~~-~~~s~~  171 (226)
                       ++.+++.++.+. +.+++|+.+++|+  +|.   |+||.+|+.|+..+.  ++.++|||+.+++++|++.|+ ++|   
T Consensus        73 -~~~~a~l~~~l~~~~~~~~l~~~~lv--~d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---  143 (172)
T PRK05456         73 -LRAAVELAKDWRTDRYLRRLEAMLIV--ADK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---  143 (172)
T ss_pred             -HHHHHHHHHHHHhccCCCccEEEEEE--EcC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---
Confidence             466677776553 3445688899999  344   699999999999665  899999999999999999999 999   


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy8684         172 ECIDFIKMGLSLAMARDYASGGLINIGV  199 (226)
Q Consensus       172 eai~la~~~l~~~~~~d~~~~~~i~i~v  199 (226)
                      ||++++++|++.|.+||..+++++++-.
T Consensus       144 eA~~la~kai~~A~~Rd~~sg~~i~v~~  171 (172)
T PRK05456        144 SAEEIAEKALKIAADICIYTNHNITIEE  171 (172)
T ss_pred             CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence            9999999999999999999999988754

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=100.00  E-value=2.6e-33  Score=220.14  Aligned_cols=165  Identities=18%  Similarity=0.218  Sum_probs=143.6

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecC-eeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISD-NIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|++ |++|++||..+|++.|.++++.+++.|+    .+.++   
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~----~~~~~---   73 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYP----GNLLR---   73 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhh----chHHH---
Confidence            689999999999999999999999999999999999998 9999999999999999999999999999    77663   


Q ss_pred             HHHHHHHHHHHH-HhccCCceeEEEEEEEeCCCCeEEEEECCCCceeee--eeEEecCChHHHHHHHhhhhcCC-CCHHH
Q psy8684          97 VYRAANLFQKIF-RSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ--NCAVGGSGSSYILGYVDKEWRAN-MKKQE  172 (226)
Q Consensus        97 ~~~~a~~l~~~~-~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~--~~~a~Gsg~~~~~~~Le~~~~~~-~s~~e  172 (226)
                        .+++.+..++ ++++..+.+.++++++     ++||.+||.|...+.  ++.++|||+.+++++|+..|+++ |+   
T Consensus        74 --~aa~l~~~l~~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---  143 (171)
T cd01913          74 --AAVELAKDWRTDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---  143 (171)
T ss_pred             --HHHHHHHHHHhccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---
Confidence              4556655553 3333334465665433     389999999999987  59999999999999999999995 99   


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy8684         173 CIDFIKMGLSLAMARDYASGGLINIGV  199 (226)
Q Consensus       173 ai~la~~~l~~~~~~d~~~~~~i~i~v  199 (226)
                      +.++|.+|++.|.+||..+|++|++-.
T Consensus       144 ~~~la~~Av~~A~~rd~~tg~~i~~~~  170 (171)
T cd01913         144 AEEIARKALKIAADICIYTNHNITVEE  170 (171)
T ss_pred             HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence            559999999999999999999998754

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=100.00  E-value=9.6e-33  Score=216.95  Aligned_cols=165  Identities=18%  Similarity=0.228  Sum_probs=143.9

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEee-cCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKI-SDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|++|++||..+|++.|.++++.+++.|+    ...     
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~----~~~-----   71 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQ----GNL-----   71 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHcc----Cch-----
Confidence            6899999999999999999999999999999999999 599999999999999999999999999998    532     


Q ss_pred             HHHHHHHHHHH-HHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeee--eeEEecCChHHHHHHHhhhh-cCCCCHHH
Q psy8684          97 VYRAANLFQKI-FRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ--NCAVGGSGSSYILGYVDKEW-RANMKKQE  172 (226)
Q Consensus        97 ~~~~a~~l~~~-~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~--~~~a~Gsg~~~~~~~Le~~~-~~~~s~~e  172 (226)
                      .+.+++.++++ .+.+++.+.+.++++||     ++||.+||.|...+.  ++.++|||+.+++++|+..| +++|+   
T Consensus        72 ~~~~a~l~~~~~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---  143 (171)
T TIGR03692        72 TRAAVELAKDWRTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---  143 (171)
T ss_pred             HHHHHHHHHHHhhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---
Confidence            46777877774 23333334466666533     389999999999985  69999999999999999999 46777   


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy8684         173 CIDFIKMGLSLAMARDYASGGLINIGV  199 (226)
Q Consensus       173 ai~la~~~l~~~~~~d~~~~~~i~i~v  199 (226)
                      |++++.++++.|.+||..+|++|++-.
T Consensus       144 a~~la~~Av~~A~~rd~~sg~~i~v~~  170 (171)
T TIGR03692       144 AEEIAREALKIAADICIYTNHNITIEE  170 (171)
T ss_pred             HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence            999999999999999999999998764

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>KOG0185|consensus

Probab=100.00  E-value=2.3e-32  Score=218.00  Aligned_cols=204  Identities=17%  Similarity=0.263  Sum_probs=186.5

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      ..++..||+|||++++|||+||+|+..++|++...++.+++++|++|+++++||..+|++.+.+.+.+...+..-   +.
T Consensus        35 ~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~---~~  111 (256)
T KOG0185|consen   35 LNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNR---LD  111 (256)
T ss_pred             cCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccc---cc
Confidence            567889999999999999999999999999999999999999999999999999999999999999988766431   56


Q ss_pred             cCCCCCHHHHHHHHHHHHHhccC---CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc--
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNEG---SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR--  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~~---p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~--  165 (226)
                      .|+.+.|+.+++++.+++|+.|.   |+...+++||+|+.+.|+|-.+|-.|..++.+++|+|.|...+.++|++.|+  
T Consensus       112 Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k  191 (256)
T KOG0185|consen  112 DGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKK  191 (256)
T ss_pred             cccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhcc
Confidence            67899999999999999998764   9999999999999888999999999999999999999999999999999997  


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684         166 -ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF  220 (226)
Q Consensus       166 -~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~  220 (226)
                       ++.+.+||..++.+||+....||+.+...+++.+|+++| +.+  -.|..|+..|
T Consensus       192 ~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG-v~i--~~p~qv~~~W  244 (256)
T KOG0185|consen  192 GEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG-VTI--SKPYQVKTNW  244 (256)
T ss_pred             chhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc-eEe--cCceeeeecc
Confidence             468999999999999999999999999999999999999 653  3555565554

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.97  E-value=8e-29  Score=192.85  Aligned_cols=160  Identities=26%  Similarity=0.362  Sum_probs=153.3

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      +|+||++++|||++|+|++.+.+.........|++.++++++++++|..+|++.+.++++.+++.|+    ++++.++++
T Consensus         1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~   76 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYR----LRYGEPISV   76 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHH----HHHCCCCCH
Confidence            5899999999999999999999877767889999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhcc--CCceeEEEEEEEeCCCCeEEEEECCCCceeee-eeEEecCChHHHHHHHhhhhcCCCCHHHHH
Q psy8684          98 YRAANLFQKIFRSNE--GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ-NCAVGGSGSSYILGYVDKEWRANMKKQECI  174 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~--~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~-~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai  174 (226)
                      ..+++.+++.++.++  +|+++++|+||+|+ ++|+||.+||.|.+.+. .++++|+++..+.++|++.|+++++.+|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~  155 (164)
T cd01901          77 VALAKELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAV  155 (164)
T ss_pred             HHHHHHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHH
Confidence            999999999999886  79999999999998 88999999999999998 999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy8684         175 DFIKMGLS  182 (226)
Q Consensus       175 ~la~~~l~  182 (226)
                      +++.++|.
T Consensus       156 ~~~~~~l~  163 (164)
T cd01901         156 ELALKALK  163 (164)
T ss_pred             HHHHHHHh
Confidence            99999985

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=6.6e-15  Score=112.10  Aligned_cols=170  Identities=16%  Similarity=0.202  Sum_probs=129.2

Q ss_pred             cCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecC-eeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684          15 TCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISD-NIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE   93 (226)
Q Consensus        15 ~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   93 (226)
                      .++||+++++.++-++||.|.++|.|+.++..+..|+.+|.. +++.+++|.++|+..|.+++..++++|.       |.
T Consensus         2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~-------g~   74 (178)
T COG5405           2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ-------GD   74 (178)
T ss_pred             ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc-------Cc
Confidence            368999999999999999999999999999999999999964 7999999999999999999999999887       33


Q ss_pred             CC-CHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCcee--eeeeEEecCChHHHHHHHhhhhc-CCCC
Q psy8684          94 PP-LVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLT--RQNCAVGGSGSSYILGYVDKEWR-ANMK  169 (226)
Q Consensus        94 ~~-~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~--~~~~~a~Gsg~~~~~~~Le~~~~-~~~s  169 (226)
                      -. .+-++++..+.  .++.+...+-+++  .|+   -.+|-+...|...  +.+.+|||||..++++.....++ ++++
T Consensus        75 L~raavelaKdwr~--Dk~lr~LEAmllV--ad~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls  147 (178)
T COG5405          75 LFRAAVELAKDWRT--DKYLRKLEAMLLV--ADK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS  147 (178)
T ss_pred             HHHHHHHHHHhhhh--hhHHHHHhhheeE--eCC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC
Confidence            21 11123332221  0112234444455  454   2467777777665  35699999999999999998875 4666


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q psy8684         170 KQECIDFIKMGLSLAMARDYASGGLINIGVLE  201 (226)
Q Consensus       170 ~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~  201 (226)
                         |.+++.++|..+.+-+..++.++.+-.+.
T Consensus       148 ---A~eIa~~sl~iA~eiciyTN~ni~ve~l~  176 (178)
T COG5405         148 ---AREIAEKSLKIAGDICIYTNHNIVVEELR  176 (178)
T ss_pred             ---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence               77889999999988777777777766554

>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=3.1e-12  Score=101.04  Aligned_cols=181  Identities=19%  Similarity=0.276  Sum_probs=142.6

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeec---Ce-eEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC-
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKIS---DN-IYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN-   92 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~-   92 (226)
                      |-|||++-+.|.|+++|+|...| +--....+|+|.-.   ++ ++++.+|.-+-.|.+++.+.+..+...    -..- 
T Consensus         2 TYCv~l~l~~GlVf~sDsRTNAG-vD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~----~~~L~   76 (255)
T COG3484           2 TYCVGLILDFGLVFGSDSRTNAG-VDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDD----GDSLL   76 (255)
T ss_pred             ceEEEEEeccceEEecccccccC-chHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccc----hhhhh
Confidence            67999999999999999998875 22234456766552   33 677899999999999999988776333    1111 


Q ss_pred             CCCCHHHHHHHHHHHHHh---ccC--------CceeEEEEEEEeCCCCeEEEEECCCCceee----eeeEEecCChHHHH
Q psy8684          93 EPPLVYRAANLFQKIFRS---NEG--------SFKAAIIIAGWDTVKGGQVYALPASGVLTR----QNCAVGGSGSSYIL  157 (226)
Q Consensus        93 ~~~~~~~~a~~l~~~~~~---~~~--------p~~v~~liaG~d~~~~p~ly~id~~G~~~~----~~~~a~Gsg~~~~~  157 (226)
                      .-.+.-+.+..+.....+   .-+        -|.|++|++|.-..+-|.||.+.|.|++.+    .+|.-+| -+.+..
T Consensus        77 n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiG-EtKYGK  155 (255)
T COG3484          77 NIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIG-ETKYGK  155 (255)
T ss_pred             cchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcc-ccccCc
Confidence            112344555555544432   111        499999999998755689999999999864    7899999 667899


Q ss_pred             HHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684         158 GYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK  204 (226)
Q Consensus       158 ~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g  204 (226)
                      ++|++.+..+++++|+.++++-.+....+.+...|-++++.++.+|.
T Consensus       156 PildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds  202 (255)
T COG3484         156 PILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS  202 (255)
T ss_pred             hhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence            99999999999999999999999999999999999999999999986

>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.37  E-value=0.033  Score=44.49  Aligned_cols=150  Identities=13%  Similarity=0.122  Sum_probs=94.8

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      +.+||..+++|.|||.|+|.                      +++-|.-.....|-+.             +..|.--+=
T Consensus         2 SLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEee-------------LYsG~Iktd   46 (194)
T PF09894_consen    2 SLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEE-------------LYSGKIKTD   46 (194)
T ss_pred             eEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHH-------------HhCCccCCH
Confidence            67899999999999999971                      3567777777666554             333554455


Q ss_pred             HHHHHHHHHHH---H--hcc-CCceeEEEEEE-------EeCCCCeEEEEE-------CCCCceeee-------eeEEec
Q psy8684          98 YRAANLFQKIF---R--SNE-GSFKAAIIIAG-------WDTVKGGQVYAL-------PASGVLTRQ-------NCAVGG  150 (226)
Q Consensus        98 ~~~a~~l~~~~---~--~~~-~p~~v~~liaG-------~d~~~~p~ly~i-------d~~G~~~~~-------~~~a~G  150 (226)
                      ++|......+=   +  ..+ .-+-..-++.|       .+. ..-++|.+       |-.|.-...       ..+..|
T Consensus        47 eEL~kkA~Elgv~i~I~D~r~KV~~~~~vlvGEV~s~~g~~s-kRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfG  125 (194)
T PF09894_consen   47 EELLKKAEELGVKIKITDDREKVRKIGDVLVGEVTSISGKDS-KRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFG  125 (194)
T ss_pred             HHHHHHHHHcCCEEEEecCchheEEeCCEEEEEEEEEcCccc-eeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEEC
Confidence            55555555321   1  111 12222223333       232 23456653       333322211       133333


Q ss_pred             CC--hHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC
Q psy8684         151 SG--SSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENG  203 (226)
Q Consensus       151 sg--~~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~  203 (226)
                      ..  -+.+...|.+.|++.|+++++..+..++|..+.+..+..+..+++...++.
T Consensus       126 Nk~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~  180 (194)
T PF09894_consen  126 NKFTKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK  180 (194)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence            22  166777788999999999999999999999998877777888998877764

They do show distant similarity to NTPases and to nucleic acid binding enzymes.

>COG4079 Uncharacterized protein conserved in archaea [Function unknown]

Probab=96.52  E-value=0.11  Score=43.01  Aligned_cols=168  Identities=14%  Similarity=0.130  Sum_probs=105.0

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      |.+|+..+++|.|+|.|.|.                      +.+-|.-.|...|-+.             +..|.--+-
T Consensus         2 tLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEek-------------LYsGeIkte   46 (293)
T COG4079           2 TLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEK-------------LYSGEIKTE   46 (293)
T ss_pred             eEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHH-------------hhcCccccH
Confidence            67899999999999999862                      2455777777666654             344665666


Q ss_pred             HHHHHHHHHHHHhc-----c---CCceeEEEEEEEeCC-----CCeEEEEE-------CCCCce--e-e----eeeEEec
Q psy8684          98 YRAANLFQKIFRSN-----E---GSFKAAIIIAGWDTV-----KGGQVYAL-------PASGVL--T-R----QNCAVGG  150 (226)
Q Consensus        98 ~~~a~~l~~~~~~~-----~---~p~~v~~liaG~d~~-----~~p~ly~i-------d~~G~~--~-~----~~~~a~G  150 (226)
                      +++++.+..+--+.     |   +..+-+++++-+...     ..-++|.+       +-.|+-  + .    ..+.+.|
T Consensus        47 EEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~G  126 (293)
T COG4079          47 EELARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFG  126 (293)
T ss_pred             HHHHHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEEC
Confidence            77777776532111     1   123233444433321     11244443       112211  0 0    2234444


Q ss_pred             CC--hHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684         151 SG--SSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN  221 (226)
Q Consensus       151 sg--~~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~  221 (226)
                      ..  -+.+..+|.+.|.+.++++++.++..++|..+...-+..+...++..+.+.-.. +..|-.+||+.++.
T Consensus       127 nk~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~-~~rl~kkDie~L~k  198 (293)
T COG4079         127 NKFTKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDP-VLRLVKKDIETLRK  198 (293)
T ss_pred             cHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCH-HHHHHHHHHHHHHH
Confidence            22  255677788999999999999999999999999777777788999988875311 23355577766654

>KOG3361|consensus

Probab=85.72  E-value=1.7  Score=32.66  Aligned_cols=43  Identities=21%  Similarity=0.342  Sum_probs=39.5

Q ss_pred             EECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684         134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus       134 ~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      .+|.+|.....+|-..|-|+..+-+-+-..|-+++++||+..+
T Consensus        72 kvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI  114 (157)
T KOG3361|consen   72 KVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI  114 (157)
T ss_pred             EECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence            5688999999999999999999999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
1iru_H	205	Crystal Structure Of The Mammalian 20s Proteasome A		6e-52
3unb_N	205	Mouse Constitutive 20s Proteasome In Complex With P		8e-52
3nzj_N	215	Crystal Structure Of Yeast 20s Proteasome In Comple		7e-46
1ryp_H	205	Crystal Structure Of The 20s Proteasome From Yeast		2e-45
1g65_N	196	Crystal Structure Of Epoxomicin:20s Proteasome Reve		4e-44
1vsy_H	196	Proteasome Activator Complex Length = 196		1e-43
3unf_N	199	Mouse 20s Immunoproteasome In Complex With Pr-957 L		1e-35
3nzj_H	261	Crystal Structure Of Yeast 20s Proteasome In Comple		3e-23
1fnt_I	232	Crystal Structure Of The 20s Proteasome From Yeast		2e-22
1ryp_I	222	Crystal Structure Of The 20s Proteasome From Yeast		2e-22
3unb_H	234	Mouse Constitutive 20s Proteasome In Complex With P		3e-19
1iru_I	234	Crystal Structure Of The Mammalian 20s Proteasome A		4e-19
3h4p_a	219	Proteasome 20s Core Particle From Methanocaldococcu		4e-17
3unf_H	234	Mouse 20s Immunoproteasome In Complex With Pr-957 L		8e-16
3unf_K	204	Mouse 20s Immunoproteasome In Complex With Pr-957 L		3e-13
1ya7_H	217	Implications For Interactions Of Proteasome With Pa		1e-12
1pma_B	211	Proteasome From Thermoplasma Acidophilum Length = 2		1e-12
3c91_H	203	Thermoplasma Acidophilum 20s Proteasome With An Ope		9e-12
3unb_K	205	Mouse Constitutive 20s Proteasome In Complex With P		1e-11
1j2q_H	202	20s Proteasome In Complex With Calpain-inhibitor I		2e-11
1iru_L	204	Crystal Structure Of The Mammalian 20s Proteasome A		6e-11
3nzj_K	287	Crystal Structure Of Yeast 20s Proteasome In Comple		1e-10
4b4t_5	287	Near-Atomic Resolution Structural Model Of The Yeas		2e-10
1g0u_K	212	A Gated Channel Into The Proteasome Core Particle L		1e-09
1ryp_L	212	Crystal Structure Of The 20s Proteasome From Yeast		3e-09
3unb_I	205	Mouse Constitutive 20s Proteasome In Complex With P		2e-07
1g0u_D	241	A Gated Channel Into The Proteasome Core Particle L		5e-07
1ryp_E	242	Crystal Structure Of The 20s Proteasome From Yeast		6e-07
4g4s_E	261	Structure Of Proteasome-Pba1-Pba2 Complex Length =		6e-07
1fnt_E	260	Crystal Structure Of The 20s Proteasome From Yeast		6e-07
2z5c_C	262	Crystal Structure Of A Novel Chaperone Complex For		6e-07
1vsy_E	250	Proteasome Activator Complex Length = 250		6e-07
1g0u_L	241	A Gated Channel Into The Proteasome Core Particle L		7e-07
1ryp_M	222	Crystal Structure Of The 20s Proteasome From Yeast		7e-07
1iru_J	205	Crystal Structure Of The Mammalian 20s Proteasome A		1e-06
3h4p_A	264	Proteasome 20s Core Particle From Methanocaldococcu		2e-06
1g0u_M	266	A Gated Channel Into The Proteasome Core Particle L		3e-06
1ryp_N	233	Crystal Structure Of The 20s Proteasome From Yeast		1e-05
1j2q_A	237	20s Proteasome In Complex With Calpain-inhibitor I		3e-05
1ryp_B	250	Crystal Structure Of The 20s Proteasome From Yeast		1e-04
1iru_M	213	Crystal Structure Of The Mammalian 20s Proteasome A		2e-04
1vsy_B	231	Proteasome Activator Complex Length = 231		2e-04
3unb_L	213	Mouse Constitutive 20s Proteasome In Complex With P		2e-04
1j2p_A	246	Alpha-Ring From The Proteasome From Archaeoglobus F		3e-04

>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score =  200 bits (508), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 141/203 (69%), Gaps = 7/203 (3%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +A +++ GV++GAD+RTT G+Y+ NR  +KLT I D I+CCRSG+AADTQA++D V+
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
           Y +     +   E+NEPPLV+ AA+LF+++         A IIIAGWD  +GGQVY++P 
Sbjct: 61  YQL----GFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 116
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G++ RQ+ A+GGSGSSYI GYVD  +R  M K+EC+ F    L+LAM RD +SGG+I +
Sbjct: 117 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 176
Query: 198 GVL-ENGKPMEKLVFTQEEVQHF 219
             + E+G  +E+ V   +++  F
Sbjct: 177 AAIAESG--VERQVLLGDQIPKF 197

>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score =  199 bits (507), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 138/202 (68%), Gaps = 5/202 (2%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +A ++  GV++GAD+RTT G+Y+ NR  +KLT I D+I+CCRSG+AADTQA++D V+
Sbjct: 1   TTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVT 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
           Y +     +   E+NEPPLV+ AA+LF+++         A IIIAGWD  +GGQVY++P 
Sbjct: 61  YQL----GFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 116
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G++ RQ+ A+GGSGSSYI GYVD  +R  M K EC+ F    L+LAM RD +SGG+I +
Sbjct: 117 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRL 176
Query: 198 GVLENGKPMEKLVFTQEEVQHF 219
             ++    +E+ V   +++  F
Sbjct: 177 AAIQESG-VERQVLLGDQIPKF 197

>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 215

Iteration: 1
 Score =  180 bits (456), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 136/207 (65%), Gaps = 6/207 (2%)
Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV+ GT+ +A  +++GV++GAD+RTT G Y+ NR  +KLT++ D I+CCRSG+AADTQAI
Sbjct: 15  EVSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAI 74
Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +D+V YH++L     Y      P    AA++F+++   N+ +  A II+AG+D    G+V
Sbjct: 75  ADIVQYHLEL-----YTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 129
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y +P  G + +   A+ GSGS++I GY DK +R NM K+E +DFIK  LS A+  D +SG
Sbjct: 130 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 189
Query: 193 GLINIGVLENGKPMEKLVFTQEEVQHF 219
           G+I + VL     +E+L+F  +E +  
Sbjct: 190 GVIRMVVL-TAAGVERLIFYPDEYEQL 215

>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 205

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 135/207 (65%), Gaps = 6/207 (2%)
Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV+ G + +A  +++GV++GAD+RTT G Y+ NR  +KLT++ D I+CCRSG+AADTQAI
Sbjct: 5   EVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAI 64
Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +D+V YH++L     Y      P    AA++F+++   N+ +  A II+AG+D    G+V
Sbjct: 65  ADIVQYHLEL-----YTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 119
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y +P  G + +   A+ GSGS++I GY DK +R NM K+E +DFIK  LS A+  D +SG
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179
Query: 193 GLINIGVLENGKPMEKLVFTQEEVQHF 219
           G+I + VL     +E+L+F  +E +  
Sbjct: 180 GVIRMVVL-TAAGVERLIFYPDEYEQL 205

>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A Molecular Basis For Selectivity Of Alpha,Beta-Epoxyketone Proteasome Inhibitors Length = 196

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 132/202 (65%), Gaps = 6/202 (2%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           T+ +A  +++GV++GAD+RTT G Y+ NR  +KLT++ D I+CCRSG+AADTQAI+D+V 
Sbjct: 1   TSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQ 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
           YH++L     Y      P    AA++F+++   N+ +  A II+AG+D    G+VY +P 
Sbjct: 61  YHLEL-----YTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPL 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G + +   A+ GSGS++I GY DK +R NM K+E +DFIK  LS A+  D +SGG+I +
Sbjct: 116 GGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRM 175
Query: 198 GVLENGKPMEKLVFTQEEVQHF 219
            VL     +E+L+F  +E +  
Sbjct: 176 VVL-TAAGVERLIFYPDEYEQL 196

>pdb|1VSY|H Chain H, Proteasome Activator Complex Length = 196

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 131/201 (65%), Gaps = 6/201 (2%)
Query: 19  TTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSY 78
           + +A  +++GV++GAD+RTT G Y+ NR  +KLT++ D I+CCRSG+AADTQAI+D+V Y
Sbjct: 2   SIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQY 61
Query: 79  HIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPAS 138
           H++L     Y      P    AA++F+++   N+ +  A II+AG+D    G+VY +P  
Sbjct: 62  HLEL-----YTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLG 116
Query: 139 GVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIG 198
           G + +   A+ GSGS++I GY DK +R NM K+E +DFIK  LS A+  D +SGG+I + 
Sbjct: 117 GSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMV 176
Query: 199 VLENGKPMEKLVFTQEEVQHF 219
           VL     +E+L+F  +E +  
Sbjct: 177 VL-TAAGVERLIFYPDEYEQL 196

>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 199

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 6/204 (2%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +A E++ GV++G+D+R + GT V NR  +KL+ +   I+C  SG+AAD QAI+D+ +
Sbjct: 1   TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
           Y ++L       E+ EPPLV  AAN+ + I         A +I+AGWD  +GGQVY    
Sbjct: 61  YQLELHGL----ELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-M 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G+L RQ   +GGSGSSYI GYVD  ++  M  +EC  F    ++LAM RD +SGG+I +
Sbjct: 116 GGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYL 175
Query: 198 GVLENGKPMEKLVFTQEEVQHFFN 221
            V      ++  V   +E+  F++
Sbjct: 176 -VTITAAGVDHRVILGDELPKFYD 198

>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 261

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Query: 15  TCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
           + GTT +  ++ NGV++ ADTR+T G  V ++   KL +IS  I+C  +GTAADT+A++ 
Sbjct: 27  STGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQ 86
Query: 75  LVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYA 134
           L+  +I+L   Y  RE    P V  A  + ++     +G   A +I+AG D   G  +++
Sbjct: 87  LIGSNIELHSLYTSRE----PRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPT-GSHLFS 141
Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
           + A G          GSGS   +  ++  W+ ++ K+E I      +   +  D  SG  
Sbjct: 142 IHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSN 201
Query: 195 INIGVLENGKPMEKL 209
           +++ V+E GK  E L
Sbjct: 202 VDVCVMEIGKDAEYL 216

>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 232

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 5/192 (2%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +  ++ NGV++ ADTR+T G  V ++   KL +IS  I+C  +GTAADT+A++ L+ 
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
            +I+L   Y  RE    P V  A  + ++     +G   A +I+AG D   G  ++++ A
Sbjct: 61  SNIELHSLYTSRE----PRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPT-GSHLFSIHA 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G          GSGS   +  ++  W+ ++ K+E I      +   +  D  SG  +++
Sbjct: 116 HGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDV 175
Query: 198 GVLENGKPMEKL 209
            V+E GK  E L
Sbjct: 176 CVMEIGKDAEYL 187

>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 222

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 5/192 (2%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +  ++ NGV++ ADTR+T G  V ++   KL +IS  I+C  +GTAADT+A++ L+ 
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
            +I+L   Y  RE    P V  A  + ++     +G   A +I+AG D   G  ++++ A
Sbjct: 61  SNIELHSLYTSRE----PRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPT-GSHLFSIHA 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G          GSGS   +  ++  W+ ++ K+E I      +   +  D  SG  +++
Sbjct: 116 HGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDV 175
Query: 198 GVLENGKPMEKL 209
            V+E GK  E L
Sbjct: 176 CVMEIGKDAEYL 187

>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 234

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 5/187 (2%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT     Y++G+++GADTR T G  V ++   K+  IS NIYCC +GTAADT   + L+S
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
            +++L      R     P V  A  + +++    +G   AA+++ G D V G  +Y++  
Sbjct: 61  SNLELHSLTTGRL----PRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYP 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G   +      GSGS   +   + ++R +M+++E    +   ++  +  D  SG  I++
Sbjct: 116 HGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDL 175
Query: 198 GVLENGK 204
            V+   K
Sbjct: 176 CVISKSK 182

>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 234

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 5/187 (2%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT     Y++G+++GADTR T G  V ++   K+  IS NIYCC +GTAADT   + L+S
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
            +++L      R     P V  A  + +++     G   AA+++ G D V G  +Y++  
Sbjct: 61  SNLELHSLSTGRL----PRVVTANRMLKQMLFRYRGYIGAALVLGGVD-VTGPHLYSIYP 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G   +      GSGS   +   + ++R +M+++E  + +   ++  +  D  SG  I++
Sbjct: 116 HGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 175
Query: 198 GVLENGK 204
            V+   K
Sbjct: 176 CVISKNK 182

>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 13/208 (6%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+    ++ V++  D R +LG  V ++EA+KL KI D I    +G+  D QAI  L+ 
Sbjct: 2   TTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLI 61
Query: 78  YHIDLDVAYGYRE-MNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYAL 135
               L   Y  R   N PPL    A L   I  S+    F   III G+D ++G ++++L
Sbjct: 62  AEAKL---YKMRTGRNIPPLA--CATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSL 116
Query: 136 -PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
            P  G+   +     GSGS    G ++  +  +M  +E I      L  AM RD  SG  
Sbjct: 117 DPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNG 176
Query: 195 INIGVL-ENGKPMEKLVFTQEEVQHFFN 221
           I++ V+ ++G      +F  EE++   +
Sbjct: 177 ISLAVITKDGVK----IFEDEEIEKILD 200

>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 234

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 7/203 (3%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT     + +GV++GADTR T  + V ++  EK+  I+  IYCC +G AADT+  + + +
Sbjct: 1   TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
             ++L      RE    P V     + ++     +G   A++++ G D + G Q+Y +  
Sbjct: 61  SKMELHALSTGRE----PRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVHP 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G  +R      GSG    +  ++  ++ NM  +   + +   ++  +  D  SGG ++ 
Sbjct: 116 HGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDA 175
Query: 198 GVLENG--KPMEKLVFTQEEVQH 218
            V+  G  K    L    E VQ 
Sbjct: 176 CVITAGGAKLQRALSTPTEPVQR 198

>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 204

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 6/181 (3%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+A ++++GV++  D+R T G+Y+ +    K+ +I+  +    SG AAD Q    L++
Sbjct: 1   TTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLA 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALP 136
               L     Y    E   V  A+ L   +     G       +I GWD  KG  +Y + 
Sbjct: 61  KECRLY----YLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDK-KGPGLYYVD 115
Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
            +G          GSG++Y  G +D  +R ++  +E  D  +  ++ A  RD  SGG++N
Sbjct: 116 DNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVN 175
Query: 197 I 197
           +
Sbjct: 176 M 176

>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 16  CGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDL 75
            GTTT+    ++ V+M  + R T+  ++ ++  +KL +I        +G   D Q    L
Sbjct: 7   TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQV---L 63
Query: 76  VSY-HIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVY 133
           V Y   +L++    R +N P  +   A L   +    +   +   +++ G DT     V+
Sbjct: 64  VRYMKAELELYRLQRRVNMP--IEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAP--HVF 119
Query: 134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
           ++ A+G       A  GSGS ++ G ++ ++   M   E +D +   +S A  RD ASGG
Sbjct: 120 SIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGG 179
Query: 194 LINIGVL 200
           +I++ V+
Sbjct: 180 MIDVAVI 186

>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 16  CGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDL 75
            GTTT+    ++ V+M  + R T+  ++ ++  +KL +I        +G   D Q    L
Sbjct: 7   TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQV---L 63
Query: 76  VSY-HIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVY 133
           V Y   +L++    R +N P  +   A L   +    +   +   +++ G DT     V+
Sbjct: 64  VRYMKAELELYRLQRRVNMP--IEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAP--HVF 119
Query: 134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
           ++ A+G       A  GSGS ++ G ++ ++   M   E +D +   +S A  RD ASGG
Sbjct: 120 SIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGG 179
Query: 194 LINIGVL 200
           +I++ V+
Sbjct: 180 MIDVAVI 186

>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 9/185 (4%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+    ++ V+M  + R T+  ++ ++  +KL +I        +G   D Q    LV 
Sbjct: 1   TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQV---LVR 57
Query: 78  Y-HIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYAL 135
           Y   +L++    R +N P  +   A L   +    +   +   +++ G DT     V+++
Sbjct: 58  YMKAELELYRLQRRVNMP--IEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAP--HVFSI 113
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLI 195
            A+G       A  GSGS ++ G ++ ++   M   E +D +   +S A  RD ASGG+I
Sbjct: 114 DAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMI 173
Query: 196 NIGVL 200
           ++ V+
Sbjct: 174 DVAVI 178

>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 9/189 (4%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+A ++ +GV++ AD+R T G Y+ ++  +K+ +I+  +    +G AAD      L++
Sbjct: 1   TTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAAN--LFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYAL 135
               +     Y   N+  +   AA+  L   +++          +I GWD  +G  +Y +
Sbjct: 61  RQCRI-----YELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYV 114
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLI 195
            + G          GSGS Y  G +D+ +  ++K +E  D  +  +  A  RD  SGG +
Sbjct: 115 DSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAV 174
Query: 196 NI-GVLENG 203
           N+  V E+G
Sbjct: 175 NLYHVREDG 183

>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 98/206 (47%), Gaps = 12/206 (5%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+    ++GV+M  + R T+G ++ ++ A+K+ +I+D +    +G+  D Q ++ ++ 
Sbjct: 1   TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYAL- 135
              +L   Y  R     P V   A L   +  S     +   ++I G D+ +G  +Y++ 
Sbjct: 61  IEANL---YEIRR-ERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSID 115
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG-GL 194
           P  G +  ++    GSGS    G ++  +   +   E ++     +  AM RD ASG G+
Sbjct: 116 PIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGI 175
Query: 195 INIGVLENGKPMEKLVFTQEEVQHFF 220
             + + E+    E   ++ EEV+   
Sbjct: 176 DVVKITED----EFYQYSPEEVEQIL 197

>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 204

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 9/189 (4%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+A ++ +GV++ AD+R T G Y+ ++  +K+ +I+  +    +G AAD      L++
Sbjct: 1   TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAAN--LFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYAL 135
               +     Y   N+  +   AA+  L   +++          +I GWD  +G  +Y +
Sbjct: 61  RQCRI-----YELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYV 114
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLI 195
            + G          GSGS Y  G +D+ +  +++ ++  D  +  +  A  RD  SGG +
Sbjct: 115 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 174
Query: 196 NI-GVLENG 203
           N+  V E+G
Sbjct: 175 NLYHVREDG 183

>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 287

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 90/192 (46%), Gaps = 4/192 (2%)
Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           ++  GTTT+A  ++ G+++  D+R T G +V ++  +K+ +I+  +    +G AAD Q  
Sbjct: 71  KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFW 130
Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
              +     L   +  RE     +   +  L   +++          +I G+   +G  +
Sbjct: 131 ETWLGSQCRL---HELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTI 187
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y + + G   + +    GSG ++  G +D  ++ ++  ++ +   K  +  A  RD  SG
Sbjct: 188 YYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSG 247
Query: 193 GLINI-GVLENG 203
           G +N+  V E+G
Sbjct: 248 GSVNLYHVTEDG 259

>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 287

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 90/192 (46%), Gaps = 4/192 (2%)
Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           ++  GTTT+A  ++ G+++  D+R T G +V ++  +++ +I+  +    +G AAD Q  
Sbjct: 71  KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFW 130
Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
              +     L   +  RE     +   +  L   +++          +I G+   +G  +
Sbjct: 131 ETWLGSQCRL---HELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTI 187
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y + + G   + +    GSG ++  G +D  ++ ++  ++ +   K  +  A  RD  SG
Sbjct: 188 YYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSG 247
Query: 193 GLINI-GVLENG 203
           G +N+  V E+G
Sbjct: 248 GSVNLYHVTEDG 259

>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle Length = 212

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 4/187 (2%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+A  ++ G+++  D+R T G +V ++  +K+ +I+  +    +G AAD Q     + 
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
               L   +  RE     +   +  L   +++          +I G+   +G  +Y + +
Sbjct: 61  SQCRL---HELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDS 117
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G   + +    GSG ++  G +D  ++ ++  ++ +   K  +  A  RD  SGG +N+
Sbjct: 118 DGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNL 177
Query: 198 -GVLENG 203
             V E+G
Sbjct: 178 YHVTEDG 184

>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 212

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 87/187 (46%), Gaps = 4/187 (2%)
Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+A  ++ G+++  D+R T G +V ++  +++ +I+  +    +G AAD Q     + 
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
               L   +  RE     +   +  L   +++          +I G+   +G  +Y + +
Sbjct: 61  SQCRL---HELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDS 117
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G   + +    GSG ++  G +D  ++ ++  ++ +   K  +  A  RD  SGG +N+
Sbjct: 118 DGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNL 177
Query: 198 -GVLENG 203
             V E+G
Sbjct: 178 YHVTEDG 184

>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 7/191 (3%)
Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G   +A + +N V + AD R  +   +   + +K+  + D +Y   +G A D Q ++  +
Sbjct: 8   GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67
Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWD--TVKGGQVYA 134
            + ++L      R++    L+   ANL   ++    G +    +IAG D  T K   + +
Sbjct: 68  KFRLNLYELKEGRQIKPYTLMSMVANL---LYEKRFGPYYTEPVIAGLDPKTFKPF-ICS 123
Query: 135 LPASGV-LTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
           L   G  +   +  V G+ S  + G  +  W  NM  +   + I   +  A+ RD  SG 
Sbjct: 124 LDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGM 183
Query: 194 LINIGVLENGK 204
            + + V+E  K
Sbjct: 184 GVIVHVIEKDK 194

>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle Length = 241

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 3/160 (1%)
Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  G+T I    + GV++G + R T    + +   EK+ +I  +I C  SG  AD +++ 
Sbjct: 31  IKLGSTAIGIATKEGVVLGVEKRAT-SPLLESDSIEKIVEIDRHIGCAMSGLTADARSMI 89
Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVY 133
           +           Y   ++N   L     +L      S    F  A++IAG D   G Q++
Sbjct: 90  EHARTAAVTHNLYYDEDINVESLTQSVCDLAAAAAMSR--PFGVALLIAGHDADDGYQLF 147
Query: 134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC 173
               SG   R N    GSGS      +  EW +++  +E 
Sbjct: 148 HAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 187

>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 242

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  G+T I    + GV++G + R T    + +   EK+ +I  +I C  SG  AD +++ 
Sbjct: 23  IKLGSTAIGIATKEGVVLGVEKRAT-SPLLESDSIEKIVEIDRHIGCAMSGLTADARSMI 81
Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS----------FKAAIIIAG 123
           +           Y   ++N   L     +L     R  EG+          F  A++IAG
Sbjct: 82  EHARTAAVTHNLYYDEDINVESLTQSVCDL---ALRFGEGASGEERLMSRPFGVALLIAG 138
Query: 124 WDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC 173
            D   G Q++    SG   R N    GSGS      +  EW +++  +E 
Sbjct: 139 HDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 188

>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex Length = 261

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  G+T I    + GV++G + R T    + +   EK+ +I  +I C  SG  AD +++ 
Sbjct: 32  IKLGSTAIGIATKEGVVLGVEKRAT-SPLLESDSIEKIVEIDRHIGCAMSGLTADARSMI 90
Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS----------FKAAIIIAG 123
           +           Y   ++N   L     +L     R  EG+          F  A++IAG
Sbjct: 91  EHARTAAVTHNLYYDEDINVESLTQSVCDL---ALRFGEGASGEERLMSRPFGVALLIAG 147
Query: 124 WDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC 173
            D   G Q++    SG   R N    GSGS      +  EW +++  +E 
Sbjct: 148 HDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 197

>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 260

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  G+T I    + GV++G + R T    + +   EK+ +I  +I C  SG  AD +++ 
Sbjct: 31  IKLGSTAIGIATKEGVVLGVEKRAT-SPLLESDSIEKIVEIDRHIGCAMSGLTADARSMI 89
Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS----------FKAAIIIAG 123
           +           Y   ++N   L     +L     R  EG+          F  A++IAG
Sbjct: 90  EHARTAAVTHNLYYDEDINVESLTQSVCDL---ALRFGEGASGEERLMSRPFGVALLIAG 146
Query: 124 WDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC 173
            D   G Q++    SG   R N    GSGS      +  EW +++  +E 
Sbjct: 147 HDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 196

>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast 20s Proteasome Assembly Length = 262

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  G+T I    + GV++G + R T    + +   EK+ +I  +I C  SG  AD +++ 
Sbjct: 33  IKLGSTAIGIATKEGVVLGVEKRAT-SPLLESDSIEKIVEIDRHIGCAMSGLTADARSMI 91
Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS----------FKAAIIIAG 123
           +           Y   ++N   L     +L     R  EG+          F  A++IAG
Sbjct: 92  EHARTAAVTHNLYYDEDINVESLTQSVCDL---ALRFGEGASGEERLMSRPFGVALLIAG 148
Query: 124 WDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC 173
            D   G Q++    SG   R N    GSGS      +  EW +++  +E 
Sbjct: 149 HDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 198

>pdb|1VSY|E Chain E, Proteasome Activator Complex Length = 250

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  G+T I    + GV++G + R T    + +   EK+ +I  +I C  SG  AD +++ 
Sbjct: 31  IKLGSTAIGIATKEGVVLGVEKRAT-SPLLESDSIEKIVEIDRHIGCAMSGLTADARSMI 89
Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS----------FKAAIIIAG 123
           +           Y   ++N   L     +L     R  EG+          F  A++IAG
Sbjct: 90  EHARTAAVTHNLYYDEDINVESLTQSVCDL---ALRFGEGASGEERLMSRPFGVALLIAG 146
Query: 124 WDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC 173
            D   G Q++    SG   R N    GSGS      +  EW +++  +E 
Sbjct: 147 HDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 196

>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle Length = 241

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI---- 72
           G T +    E+  ++  DTR      + +R   K+    DNI    +G AAD  A+    
Sbjct: 28  GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 87
Query: 73  -SDLVSYHIDLDVAYGYREMNEPPLVYRAA--NLFQKIFRSNEGSFKAAIIIAGWDTVKG 129
            + +  YH D          N+  L   +A  N+   ++      +    IIAG D    
Sbjct: 88  KNSVKWYHFD---------HNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGK 138
Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDK--------EWRANMKKQECIDFIKMGL 181
           G VY+    G   R+ C  GG+ +S I+ ++D         E   N K ++ + ++ +  
Sbjct: 139 GAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEE 198
Query: 182 SLAMARD-YASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220
            + + RD + S    +I V   G  +E L+ T++ V+  F
Sbjct: 199 VIKLVRDSFTSATERHIQV---GDGLEILIVTKDGVRKEF 235

>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 222

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI---- 72
           G T +    E+  ++  DTR      + +R   K+    DNI    +G AAD  A+    
Sbjct: 9   GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 73  -SDLVSYHIDLDVAYGYREMNEPPLVYRAA--NLFQKIFRSNEGSFKAAIIIAGWDTVKG 129
            + +  YH D          N+  L   +A  N+   ++      +    IIAG D    
Sbjct: 69  KNSVKWYHFD---------HNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGK 119
Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDK--------EWRANMKKQECIDFIKMGL 181
           G VY+    G   R+ C  GG+ +S I+ ++D         E   N K ++ + ++ +  
Sbjct: 120 GAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEE 179
Query: 182 SLAMARD-YASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220
            + + RD + S    +I V   G  +E L+ T++ V+  F
Sbjct: 180 VIKLVRDSFTSATERHIQV---GDGLEILIVTKDGVRKEF 216

>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 7/191 (3%)
Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G   +A + +N V + AD R  +   +   + +K+  + D +Y   +G A D Q ++  +
Sbjct: 8   GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67
Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWD--TVKGGQVYA 134
            + ++L      R++    L+   ANL   ++    G +    +IAG D  T K   + +
Sbjct: 68  KFRLNLYELKEGRQIKPYTLMSMVANL---LYEKRFGPYYTEPVIAGLDPKTFKPF-ICS 123
Query: 135 LPASGV-LTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
           L   G  +   +  V G+ +  + G  +  W  NM      + I   +  A+ RD  SG 
Sbjct: 124 LDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGM 183
Query: 194 LINIGVLENGK 204
            + + ++E  K
Sbjct: 184 GVIVHIIEKDK 194

>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 264

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 7/174 (4%)
Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  GTT I    ++GV++  D R T    V  R  EK+ +I D++    SG  AD + + 
Sbjct: 35  VRRGTTAIGIACKDGVVLAVDRRIT-SKLVKIRSIEKIFQIDDHVAAATSGLVADARVLI 93
Query: 74  DLVSYHIDL-DVAYGYREMNEPPLVYRAANLFQKIFRSNEG--SFKAAIIIAGWDTVKGG 130
           D       +  + YG  E++   L  +  ++ Q  +  + G   F  +++IAG D     
Sbjct: 94  DRARLEAQIYRLTYG-EEISIEMLAKKICDIKQA-YTQHGGVRPFGVSLLIAGIDK-NEA 150
Query: 131 QVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
           +++    SG L        GSG   ++  ++KE+R ++   E ++     L+ A
Sbjct: 151 RLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKA 204

>pdb|1G0U|M Chain M, A Gated Channel Into The Proteasome Core Particle Length = 266

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 6   PDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGT 65
           P ++    +  GT+ I+ +Y+NGV++ AD   + G+ +     E+L  + DN     SG 
Sbjct: 30  PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGD 89
Query: 66  AADTQAI----SDLVSYHIDLDVAYGYREMNEPPLV--YRAANLFQKIFRSNEGSFKAAI 119
            +D Q I     DLV+ +   +      E  EP  +  Y A  ++Q+  RS       AI
Sbjct: 90  ISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQR--RSKMNPLWNAI 147
Query: 120 IIAG 123
           I+AG
Sbjct: 148 IVAG 151

>pdb|1RYP|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 233

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI- 72
           +  GT+ I+ +Y+NGV++ AD   + G+ +     E+L  + DN     SG  +D Q I 
Sbjct: 5   IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIE 64
Query: 73  ---SDLVSYHIDLDVAYGYREMNEPPLV--YRAANLFQKIFRSNEGSFKAAIIIAG 123
               DLV+ +   +      E  EP  +  Y A  ++Q+  RS       AII+AG
Sbjct: 65  RLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQR--RSKMNPLWNAIIVAG 118

>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 237

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREA-EKLTKISDNIYCCRSGTAADTQAI 72
           V  G T I  + + GV++ AD R  +G+ +   +  EK+ KI ++I    SG  AD + +
Sbjct: 22  VKRGATAIGIKCKEGVILIADKR--VGSKLLEADTIEKIYKIDEHICAATSGLVADARVL 79
Query: 73  SDLVSYHIDLD-VAYGYREMNEPPLVYRAANL---FQKIFRSNEG--SFKAAIIIAGWDT 126
            D       ++ + Y     +EP  V   A     F++ +    G   F  +++IAG D 
Sbjct: 80  IDRARIEAQINRLTY-----DEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDE 134
Query: 127 VKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC--IDFIKMGLSL 183
           V   ++Y    SG L        G G + +  + +KE+R ++   +   +  + MGLS+
Sbjct: 135 VP--KLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSI 191

>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 250

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 85/202 (42%), Gaps = 12/202 (5%)
Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A T V  G T++  +  NGV++  + +++      +    K++ ++ +I    SG   D 
Sbjct: 24  ALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDY 82
Query: 70  QAISDLVSY--HIDLDVAYGYREMNEPP---LVYRAANLFQKIFRSNE-GSFKAAIIIAG 123
           + + D      H      YG      PP   LV   A + Q+  +S     F  +++IAG
Sbjct: 83  RVLVDKSRKVAHTSYKRIYG----EYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAG 138
Query: 124 WDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSL 183
            D   G  +Y +  SG          G GS     +++K W   ++ ++ I    + L  
Sbjct: 139 HDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKE 198
Query: 184 AMARDYASGGLINIGVLENGKP 205
           ++  ++ +G  I + ++ +  P
Sbjct: 199 SVEGEF-NGDTIELAIIGDENP 219

>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 213

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 9/171 (5%)
Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G T +A   E+  ++ +DTR + G  +  R++ K  K++D      SG   D   ++ ++
Sbjct: 9   GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 77  SYHIDLDVAYGYREMNEPPLVYRA-ANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYA 134
              + +     Y+  N   +   A A +   I  S     +    II G D    G VY+
Sbjct: 69  EARLKM-----YKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYS 123
Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM 185
               G   R +   GGS S+ +   +D +     K  + ++ + + L  AM
Sbjct: 124 FDPVGSYQRDSFKAGGSASAMLQPLLDNQ--VGFKNMQNVEHVPLSLDRAM 172

>pdb|1VSY|B Chain B, Proteasome Activator Complex Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 85/202 (42%), Gaps = 12/202 (5%)
Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A T V  G T++  +  NGV++  + +++      +    K++ ++ +I    SG   D 
Sbjct: 5   ALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDY 63
Query: 70  QAISDLVSY--HIDLDVAYGYREMNEPP---LVYRAANLFQKIFRSNE-GSFKAAIIIAG 123
           + + D      H      YG      PP   LV   A + Q+  +S     F  +++IAG
Sbjct: 64  RVLVDKSRKVAHTSYKRIYG----EYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAG 119
Query: 124 WDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSL 183
            D   G  +Y +  SG          G GS     +++K W   ++ ++ I    + L  
Sbjct: 120 HDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKE 179
Query: 184 AMARDYASGGLINIGVLENGKP 205
           ++  ++ +G  I + ++ +  P
Sbjct: 180 SVEGEF-NGDTIELAIIGDENP 200

>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 213

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 26/211 (12%)
Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G T +A   E+  ++ +DTR + G  +  R++ K  K++D      SG   D   ++ ++
Sbjct: 9   GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 77  SYHIDLDVAYGYREMNEPPLVYRA-ANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYA 134
              + +     Y+  N   +   A A +   I  S     +    II G D    G VY+
Sbjct: 69  EARLKM-----YKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYS 123
Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM--------- 185
               G   R +   GGS S+ +   +D +     K  + ++ + + L  AM         
Sbjct: 124 FDPVGSYQRDSFKAGGSASAMLQPLLDNQ--VGFKNMQNVEHVPLTLDRAMRLVKDVFIS 181
Query: 186 --ARDYASGGLINI------GVLENGKPMEK 208
              RD  +G  + I      G+ E   P+ K
Sbjct: 182 AAERDVYTGDALRICIVTKEGIREETVPLRK 212

>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus Length = 246

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREA-EKLTKISDNIYCCRSGTAADTQAI 72
           V  G T I  + + GV++ AD R  +G+ +  ++  EK+ KI ++I    SG  AD + +
Sbjct: 31  VKRGATAIGIKCKEGVILIADKR--VGSKLLEKDTIEKIYKIDEHICAATSGLVADARVL 88
Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKI--FRSNEGS------FKAAIIIAGW 124
            D       ++     R   + P+  +   L +KI  F+           F  +++IAG 
Sbjct: 89  IDRARIEAQIN-----RLTYDIPITVK--ELAKKICDFKQQYTQYGGVRPFGVSLLIAGV 141
Query: 125 DTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQE--CIDFIKMGLS 182
           + V   ++Y    SG L        G G   +  + +KE+R ++   +   +  + MGLS
Sbjct: 142 NEVP--KLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLS 199
Query: 183 L 183
           +
Sbjct: 200 I 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	4e-73
1iru_H	205	20S proteasome; cell cycle, immune response, prote	1e-71
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	3e-68
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	1e-67
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	2e-67
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	7e-67
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	1e-66
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	4e-66
1iru_I	234	20S proteasome; cell cycle, immune response, prote	1e-65
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	1e-65
1iru_L	204	20S proteasome; cell cycle, immune response, prote	4e-64
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	6e-64
1iru_J	205	20S proteasome; cell cycle, immune response, prote	1e-63
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	7e-63
1iru_N	219	20S proteasome; cell cycle, immune response, prote	7e-62
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	1e-61
1iru_K	201	20S proteasome; cell cycle, immune response, prote	3e-61
1iru_M	213	20S proteasome; cell cycle, immune response, prote	8e-61
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	6e-60
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	2e-59
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	9e-59
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	2e-56
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	1e-55
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	4e-54
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	3e-53
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	3e-28
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	7e-24
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	2e-16
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	6e-11
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	1e-10
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	1e-10
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	2e-10
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	9e-10
1iru_G	254	20S proteasome; cell cycle, immune response, prote	1e-09
1iru_C	261	20S proteasome; cell cycle, immune response, prote	2e-09
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	4e-09
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	1e-08
1iru_E	241	20S proteasome; cell cycle, immune response, prote	2e-08
1iru_D	248	20S proteasome; cell cycle, immune response, prote	2e-08
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	7e-08
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	8e-08
1iru_B	233	20S proteasome; cell cycle, immune response, prote	9e-08
1iru_B	233	20S proteasome; cell cycle, immune response, prote	1e-07
1iru_F	263	20S proteasome; cell cycle, immune response, prote	5e-07
1iru_A	246	20S proteasome; cell cycle, immune response, prote	7e-07
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	8e-07
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	4e-06
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	2e-05

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score =  219 bits (561), Expect = 4e-73
 Identities = 89/208 (42%), Positives = 136/208 (65%), Gaps = 8/208 (3%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV+ G + +A  +++GV++GAD+RTT G Y+ NR  +KLT++ D I+CCRSG+AADTQAI
Sbjct: 5   EVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAI 64

Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +D+V YH++L     Y      P    AA++F+++   N+ +  A II+AG+D    G+V
Sbjct: 65  ADIVQYHLEL-----YTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 119

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y +P  G + +   A+ GSGS++I GY DK +R NM K+E +DFIK  LS A+  D +SG
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179

Query: 193 GLINIGVL-ENGKPMEKLVFTQEEVQHF 219
           G+I + VL   G  +E+L+F  +E +  
Sbjct: 180 GVIRMVVLTAAG--VERLIFYPDEYEQL 205

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score =  216 bits (552), Expect = 1e-71
 Identities = 96/203 (47%), Positives = 139/203 (68%), Gaps = 7/203 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +A +++ GV++GAD+RTT G+Y+ NR  +KLT I D I+CCRSG+AADTQA++D V+
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
           Y +     +     NEPPLV+ AA+LF+++         A IIIAGWD  +GGQVY++P 
Sbjct: 61  YQLGF---HSIEL-NEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 116

Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G++ RQ+ A+GGSGSSYI GYVD  +R  M K+EC+ F    L+LAM RD +SGG+I +
Sbjct: 117 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 176

Query: 198 GVL-ENGKPMEKLVFTQEEVQHF 219
             + E+G  +E+ V   +++  F
Sbjct: 177 AAIAESG--VERQVLLGDQIPKF 197

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score =  209 bits (534), Expect = 3e-68
 Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
             + GTT +  ++ NGV++ ADTR+T G  V ++   KL +IS  I+C  +GTAADT+A+
Sbjct: 25  ATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 84

Query: 73  SDLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQ 131
           + L+  +I+L     +    +  P V  A  + ++     +G   A +I+AG D   G  
Sbjct: 85  TQLIGSNIEL-----HSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVD-PTGSH 138

Query: 132 VYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAS 191
           ++++ A G          GSGS   +  ++  W+ ++ K+E I      +   +  D  S
Sbjct: 139 LFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGS 198

Query: 192 GGLINIGVLENGKPMEKL 209
           G  +++ V+E GK  E L
Sbjct: 199 GSNVDVCVMEIGKDAEYL 216

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score =  205 bits (524), Expect = 1e-67
 Identities = 82/203 (40%), Positives = 122/203 (60%), Gaps = 6/203 (2%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +A E++ GV++G+D+R + GT V NR  +KL+ +   I+C  SG+AAD QAI+D+ +
Sbjct: 1   TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
           Y ++L   +G     EPPLV  AAN+ + I         A +I+AGWD  +GGQVY    
Sbjct: 61  YQLEL---HGLEL-EEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMG 116

Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G+L RQ   +GGSGSSYI GYVD  ++  M  +EC  F    ++LAM RD +SGG+I +
Sbjct: 117 -GMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYL 175

Query: 198 GVLENGKPMEKLVFTQEEVQHFF 220
             +     ++  V   +E+  F+
Sbjct: 176 VTITAAG-VDHRVILGDELPKFY 197

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score =  206 bits (526), Expect = 2e-67
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +  ++ NGV++ ADTR+T G  V ++   KL +IS  I+C  +GTAADT+A++ L+ 
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60

Query: 78  YHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
            +I+L     +    +  P V  A  + ++     +G   A +I+AG D   G  ++++ 
Sbjct: 61  SNIEL-----HSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVD-PTGSHLFSIH 114

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
           A G          GSGS   +  ++  W+ ++ K+E I      +   +  D  SG  ++
Sbjct: 115 AHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 174

Query: 197 IGVLENGKPMEKL 209
           + V+E GK  E L
Sbjct: 175 VCVMEIGKDAEYL 187

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score =  204 bits (522), Expect = 7e-67
 Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 8/200 (4%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT     + +GV++GADTR T  + V ++  EK+  I+  IYCC +G AADT+  + + +
Sbjct: 1   TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60

Query: 78  YHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
             ++L     +       P V     + ++     +G   A++++ G D + G Q+Y + 
Sbjct: 61  SKMEL-----HALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVH 114

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
             G  +R      GSG    +  ++  ++ NM  +   + +   ++  +  D  SGG ++
Sbjct: 115 PHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVD 174

Query: 197 IGVL-ENGKPMEKLVFTQEE 215
             V+   G  +++ + T  E
Sbjct: 175 ACVITAGGAKLQRALSTPTE 194

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score =  206 bits (526), Expect = 1e-66
 Identities = 45/203 (22%), Positives = 95/203 (46%), Gaps = 6/203 (2%)

Query: 3   PNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCR 62
            +  +     ++  GTTT+A  ++ G+++  D+R T G +V ++  +K+ +I+  +    
Sbjct: 61  DDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTM 120

Query: 63  SGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS-FKAAIII 121
           +G AAD Q     +     L   +  RE  E   V  A+ +   +    +G+      +I
Sbjct: 121 AGGAADCQFWETWLGSQCRL---HELRE-KERISVAAASKILSNLVYQYKGAGLSMGTMI 176

Query: 122 AGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGL 181
            G+   +G  +Y + + G   + +    GSG ++  G +D  ++ ++  ++ +   K  +
Sbjct: 177 CGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSI 236

Query: 182 SLAMARDYASGGLINIGVL-ENG 203
             A  RD  SGG +N+  + E+G
Sbjct: 237 LAAAHRDAYSGGSVNLYHVTEDG 259

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score =  202 bits (516), Expect = 4e-66
 Identities = 45/207 (21%), Positives = 93/207 (44%), Gaps = 11/207 (5%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
            +  GTTT+    ++ V+M  + R T+  ++ ++  +KL +I        +G   D Q +
Sbjct: 4   TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVL 63

Query: 73  SDLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGG 130
              +   ++L     YR +      +   A L   +    +   +   +++ G DT    
Sbjct: 64  VRYMKAELEL-----YRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDT--AP 116

Query: 131 QVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYA 190
            V+++ A+G       A  GSGS ++ G ++ ++   M   E +D +   +S A  RD A
Sbjct: 117 HVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSA 176

Query: 191 SGGLINIGVLENGKPMEKLVFTQEEVQ 217
           SGG+I++ V+       +L    ++++
Sbjct: 177 SGGMIDVAVITRKDGYVQL--PTDQIE 201

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score =  201 bits (514), Expect = 1e-65
 Identities = 54/187 (28%), Positives = 97/187 (51%), Gaps = 6/187 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT     Y++G+++GADTR T G  V ++   K+  IS NIYCC +GTAADT   + L+S
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
            +++L   +        P V  A  + +++     G   AA+++ G D V G  +Y++  
Sbjct: 61  SNLEL---HSLST-GRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVD-VTGPHLYSIYP 115

Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G   +      GSGS   +   + ++R +M+++E  + +   ++  +  D  SG  I++
Sbjct: 116 HGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 175

Query: 198 GVL-ENG 203
            V+ +N 
Sbjct: 176 CVISKNK 182

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score =  200 bits (512), Expect = 1e-65
 Identities = 43/188 (22%), Positives = 89/188 (47%), Gaps = 6/188 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+A  ++ G+++  D+R T G +V ++  +++ +I+  +    +G AAD Q     + 
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALP 136
               L   +  RE  E   V  A+ +   +    +G       +I G+   +G  +Y + 
Sbjct: 61  SQCRL---HELRE-KERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVD 116

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
           + G   + +    GSG ++  G +D  ++ ++  ++ +   K  +  A  RD  SGG +N
Sbjct: 117 SDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVN 176

Query: 197 IGVL-ENG 203
           +  + E+G
Sbjct: 177 LYHVTEDG 184

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score =  197 bits (502), Expect = 4e-64
 Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 7/188 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+A ++ +GV++ AD+R T G Y+ ++  +K+ +I+  +    +G AAD      L++
Sbjct: 1   TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALP 136
               +   Y  R   E   V  A+ L   +    +G       +I GWD  +G  +Y + 
Sbjct: 61  RQCRI---YELRN-KERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVD 115

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
           + G          GSGS Y  G +D+ +  +++ ++  D  +  +  A  RD  SGG +N
Sbjct: 116 SEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVN 175

Query: 197 IGVL-ENG 203
           +  + E+G
Sbjct: 176 LYHVREDG 183

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score =  197 bits (502), Expect = 6e-64
 Identities = 13/186 (6%), Positives = 32/186 (17%), Gaps = 6/186 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           +                       Y      E + + +  I                   
Sbjct: 2   SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSK 61

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS-FKAAIIIAGWDTVKGGQVYAL- 135
                      +   +      AA               +    I      +   +  L 
Sbjct: 62  LVKIR---SIEKI-FQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLA 117

Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLI 195
                + +     GG     +   +    +   +  E      +    A A       ++
Sbjct: 118 KKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVM 177

Query: 196 NIGVLE 201
            +   E
Sbjct: 178 ELLEKE 183

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score =  195 bits (498), Expect = 1e-63
 Identities = 39/201 (19%), Positives = 81/201 (40%), Gaps = 7/201 (3%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G   +A + +N V + AD R  +   +   + +K+  + D +Y   +G A D Q ++  +
Sbjct: 8   GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSN-EGSFKAAIIIAGWD-TVKGGQVYA 134
            + ++L   Y  +E       Y   ++   +      G +    +IAG D       + +
Sbjct: 68  KFRLNL---YELKE-GRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICS 123

Query: 135 LPASG-VLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
           L   G  +   +  V G+ +  + G  +  W  NM      + I   +  A+ RD  SG 
Sbjct: 124 LDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGM 183

Query: 194 LINIGVLENGKPMEKLVFTQE 214
            + + ++E  K   + +  + 
Sbjct: 184 GVIVHIIEKDKITTRTLKARM 204

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score =  193 bits (493), Expect = 7e-63
 Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 7/186 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+    ++GV+M  + R T+G ++ ++ A+K+ +I+D +    +G+  D Q ++ ++ 
Sbjct: 1   TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYAL- 135
              +L   Y  R     P V   A L   +  S     +   ++I G D+ +G  +Y++ 
Sbjct: 61  IEANL---YEIRR-ERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSID 115

Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLI 195
           P  G +  ++    GSGS    G ++  +   +   E ++     +  AM RD ASG  I
Sbjct: 116 PIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGI 175

Query: 196 NIGVLE 201
           ++  + 
Sbjct: 176 DVVKIT 181

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score =  191 bits (488), Expect = 7e-62
 Identities = 30/198 (15%), Positives = 68/198 (34%), Gaps = 10/198 (5%)

Query: 12  TEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQA 71
             +  GT+ +  ++E GV++ AD   + G+    R   ++ +++++     SG  AD Q 
Sbjct: 3   NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY 62

Query: 72  ISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIF---RSNEGSFKAAIIIAGWDTVK 128
           +  ++   +                     +   +     RS        ++I G+    
Sbjct: 63  LKQVLGQMVID---EELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-G 118

Query: 129 GGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK--EWRANMKKQECIDFIKMGLSLAMA 186
              +  +   GV         G G+      + +  E +  + + E  D ++  + +   
Sbjct: 119 ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYY 178

Query: 187 RDYASGGLINIGVL-ENG 203
           RD  S        + E G
Sbjct: 179 RDARSYNRFQTATVTEKG 196

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score =  190 bits (485), Expect = 1e-61
 Identities = 30/186 (16%), Positives = 70/186 (37%), Gaps = 8/186 (4%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
              +    ++ V++ +    T G  V     +K  ++S +     +G A DT   ++ + 
Sbjct: 2   DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKI---FRSNEGSFKAAIIIAGWDTVKGG-QVY 133
            +I L   Y  RE +        ++  ++       +   ++  ++I G+D  K   ++Y
Sbjct: 62  ANIQL---YSIRE-DYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELY 117

Query: 134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
            +   G          G    Y    +D  +R +M  +E +D +K+ +     R      
Sbjct: 118 QIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFK 177

Query: 194 LINIGV 199
            + + +
Sbjct: 178 GVIVKI 183

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score =  189 bits (483), Expect = 3e-61
 Identities = 32/190 (16%), Positives = 76/190 (40%), Gaps = 8/190 (4%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
              I  +  + V++ +D            + +K+ K+S+ I     G A DT   ++ + 
Sbjct: 2   EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKI---FRSNEGSFKAAIIIAGWDTVKGGQVYA 134
            ++ L   Y  R          AAN  ++       +   +   +++AG+D  +G  +Y 
Sbjct: 62  KNVQL---YKMRN-GYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYY 117

Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
           +     L +   A  G G+   L  +D+ +   + ++  ++ ++  L     R   +   
Sbjct: 118 MDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPT 177

Query: 195 INIGVL-ENG 203
            ++ ++ +NG
Sbjct: 178 FSVRIIDKNG 187

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score =  188 bits (481), Expect = 8e-61
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 14/208 (6%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G T +A   E+  ++ +DTR + G  +  R++ K  K++D      SG   D   ++ ++
Sbjct: 9   GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYAL 135
              + +   Y +   N+       A +   I  S     +    II G D    G VY+ 
Sbjct: 69  EARLKM---YKHSN-NKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 124

Query: 136 PASGVLTRQNCAVGGSGSSYILGYVD---------KEWRANMKKQECIDFIKMGLSLAMA 186
              G   R +   GGS S+ +   +D               +     +  +K     A  
Sbjct: 125 DPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 184

Query: 187 RDYASGGLINIGVLENGKPMEKLVFTQE 214
           RD  +G  + I ++      E+ V  ++
Sbjct: 185 RDVYTGDALRICIVTKEGIREETVSLRK 212

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score =  187 bits (477), Expect = 6e-60
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 9/205 (4%)

Query: 12  TEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQA 71
             +  GT+ I+ +Y+NGV++ AD   + G+ +     E+L  + DN     SG  +D Q 
Sbjct: 3   QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQH 62

Query: 72  ISDLVSYHIDL-DVAYGYREMNEPPLVYRAANLFQKIF---RSNEGSFKAAIIIAGWDTV 127
           I  L+   +          +  E             +    RS       AII+AG  + 
Sbjct: 63  IERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN 122

Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-----ANMKKQECIDFIKMGLS 182
               +  +   GV         G G+      + K             Q   + I   + 
Sbjct: 123 GDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMR 182

Query: 183 LAMARDYASGGLINIGVLENGKPME 207
           +   RD  S    ++ +++    + 
Sbjct: 183 VLYYRDARSSRNFSLAIIDKNTGLT 207

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score =  185 bits (472), Expect = 2e-59
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 21/217 (9%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G T +    E+  ++  DTR      + +R   K+    DNI    +G AAD  A+    
Sbjct: 9   GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSN-EGSFKAAIIIAGWDTVKGGQVYAL 135
              +     Y +   ++   +  AA   Q +        +    IIAG D    G VY+ 
Sbjct: 69  KNSVKW---YHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSF 125

Query: 136 PASGVLTRQNCAVGGSGSSYILGYVD-----------------KEWRANMKKQECIDFIK 178
              G   R+ C  GG+ +S I+ ++D                 K+    +  +E I  ++
Sbjct: 126 DPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVR 185

Query: 179 MGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEE 215
              + A  R    G  + I ++      ++    + +
Sbjct: 186 DSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score =  183 bits (466), Expect = 9e-59
 Identities = 32/201 (15%), Positives = 79/201 (39%), Gaps = 8/201 (3%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G   +A   ++ V +  D R    +   + + EK+     +++   +G A D   ++++ 
Sbjct: 8   GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMF 66

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSN-EGSFKAAIIIAGWDTVKG-GQVYA 134
            Y  +L   Y  +E            L          G +    ++AG ++  G   +  
Sbjct: 67  RYKTNL---YKLKE-ERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAG 122

Query: 135 LPASG-VLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
               G +   ++  V G+ S  + G  +  +  N++ ++  + I   L  A  RD  SG 
Sbjct: 123 FDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGW 182

Query: 194 LINIGVLENGKPMEKLVFTQE 214
              + +++  + +++ +  ++
Sbjct: 183 GAVVYIIKKDEVVKRYLKMRQ 203

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score =  180 bits (457), Expect = 2e-56
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 17/209 (8%)

Query: 1   MEPNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYC 60
           +    P      ++  GTT +A +Y  GV+M  D R+T G  +  R+  K+    D    
Sbjct: 41  ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT 100

Query: 61  CRSGTAADTQAISDLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNE----GSF 115
             +GTAA     + L +  ++      Y      P       N    + R N        
Sbjct: 101 GIAGTAAVAVEFARLYAVELEH-----YEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGL 155

Query: 116 KAAIIIAGWD-----TVKGGQVYALPASGV--LTRQNCAVGGSGSSYILGYVDKEWRANM 168
            A  ++AG+D         G++ +  A+G   +  +     GSGS +    + K +    
Sbjct: 156 LALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVT 215

Query: 169 KKQECIDFIKMGLSLAMARDYASGGLINI 197
                +      L  A   D A+GG   +
Sbjct: 216 DGDSGLRVAVEALYDAADDDSATGGPDLV 244

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score =  177 bits (451), Expect = 1e-55
 Identities = 39/207 (18%), Positives = 70/207 (33%), Gaps = 15/207 (7%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
            +  GT+ I+ +Y+NGV++ AD   + G+ +     E+L  + DN     SG  +D Q I
Sbjct: 37  PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 96

Query: 73  SDLVSYHIDLDVAYGYRE----MNEPPLVYRAANLFQKIF---RSNEGSFKAAIIIAGWD 125
             L+   +       Y        E             +    RS       AII+AG  
Sbjct: 97  ERLLKDLVTE---NAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 153

Query: 126 TVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-----ANMKKQECIDFIKMG 180
           +     +  +   GV         G G+      + K             Q   + I   
Sbjct: 154 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 213

Query: 181 LSLAMARDYASGGLINIGVLENGKPME 207
           + +   RD  S    ++ +++    + 
Sbjct: 214 MRVLYYRDARSSRNFSLAIIDKNTGLT 240

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score =  172 bits (438), Expect = 4e-54
 Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 17/196 (8%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +A  Y+ GV++  D R T G  + +R+ EK+    +      +GTA     +  L +
Sbjct: 1   TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60

Query: 78  YHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGS----FKAAIIIAGWDTV----- 127
             ++      Y      P      AN    + R N G+         ++ G+D       
Sbjct: 61  VELEH-----YEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDES 115

Query: 128 KGGQVYALPASG--VLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM 185
           + G++ +    G     R      GSGS +    + K +  +  ++  +      L  A 
Sbjct: 116 RAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAA 175

Query: 186 ARDYASGGLINIGVLE 201
             D A+GG      + 
Sbjct: 176 DDDSATGGPDLTRGIY 191

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score =  172 bits (436), Expect = 3e-53
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 17/204 (8%)

Query: 6   PDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGT 65
             + +G     GTT +A  Y+ GV++  D R T G  + +R+ E +    +      +GT
Sbjct: 54  DGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGT 113

Query: 66  AADTQAISDLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGS----FKAAII 120
           A     +  L +  ++      Y      P      AN    + R N G+         +
Sbjct: 114 AGIAIELVRLFAVELEH-----YEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPL 168

Query: 121 IAGWDTV-----KGGQVYALPASG--VLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC 173
           + G+D       + G++ +    G     R      GSGS +    + K +  +  ++  
Sbjct: 169 LVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETA 228

Query: 174 IDFIKMGLSLAMARDYASGGLINI 197
           +      L  A   D A+GG    
Sbjct: 229 LRAAIESLYDAADDDSATGGPDLT 252

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259

 Score =  106 bits (266), Expect = 3e-28
 Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 18/218 (8%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A   +  G + +   + +GV+  A+  +T           K++++ D +     G   + 
Sbjct: 20  ARKGIARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEF 71

Query: 70  QAISDLVSYHIDL-DVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIA---GWD 125
           + +      H D+   +Y  R++    L    A     IF      ++  I +A      
Sbjct: 72  ENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVG 131

Query: 126 TVKGGQVYALPASGVLTRQN-CAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
           + K  Q+Y +   G +  +    V G  +  I   + + +RA++  +  +      L   
Sbjct: 132 SPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQG 191

Query: 185 MARDYASGGL----INIGVLENGKPMEKL-VFTQEEVQ 217
            A +     +    + + VL+  +P           ++
Sbjct: 192 GAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALE 229

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248

 Score = 94.6 bits (235), Expect = 7e-24
 Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 20/220 (9%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A   +    + +A  Y  GV+  A+  +        R  +K++++ D +    +G   + 
Sbjct: 20  ARKGIARAKSVVALAYAGGVLFVAENPS--------RSLQKISELYDRVGFAAAGKFNEF 71

Query: 70  QAISDLVSYHIDL-DVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTV- 127
             +        D    AY  R++    L    A     IF      ++  + +A      
Sbjct: 72  DNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYG 131

Query: 128 --KGGQVYALPASGVLTRQNCAV-GGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
             K  ++Y +   G +  +   V  G  +  I   + + +  N    + +      L   
Sbjct: 132 ETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAG 191

Query: 185 MARDYASGGL------INIGVLENGKPMEKL-VFTQEEVQ 217
            A              + + VL+  +P       T   +Q
Sbjct: 192 SADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQ 231

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Length = 174

 Score = 73.1 bits (179), Expect = 2e-16
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 11/149 (7%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDN-IYCCRSGTAADTQAISDLV 76
           TT ++      V++G D + +LG  V    A K+ ++ +  +    +G  AD   + +L 
Sbjct: 1   TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
                L++  G+          ++A    K +R++    K   ++   D  +   +  + 
Sbjct: 61  ERK--LEMHQGHLL--------KSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIG 110

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWR 165
                        GSG +Y L        
Sbjct: 111 DVVQPEEDQILAIGSGGNYALSAARALVE 139

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Length = 171

 Score = 58.5 bits (141), Expect = 6e-11
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 14/150 (9%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDN-IYCCRSGTAADTQAISDLV 76
           TT +        +MG D + T G+ V    A K+ K+ +  +    +G+ AD   + D  
Sbjct: 1   TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
              +               L  +AA    K +R++    +   ++   D      +    
Sbjct: 61  EAKL---------REWGGNLT-KAAVELAKDWRTDRVLRRLEALLLVADKENIFIIS--G 108

Query: 137 ASGVL-TRQNCAVGGSGSSYILGYVDKEWR 165
              V+    + A  GSG  Y L       R
Sbjct: 109 NGEVIQPDDDAAAIGSGGPYALAAAKALLR 138

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 42/218 (19%), Positives = 85/218 (38%), Gaps = 16/218 (7%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A   ++   T I     +G+++ A+ + T      +   EKL K++D I    +G  AD 
Sbjct: 24  ALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADA 83

Query: 70  QAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIA 122
           + + +       +Y       Y   ++    LV R +++ Q  +  + G   F  + I A
Sbjct: 84  EILINTARIHAQNYLK----TYNE-DIPVEILVRRLSDIKQG-YTQHGGLRPFGVSFIYA 137

Query: 123 GWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLS 182
           G+D   G Q+Y    SG  T       G+ +S     +  +++ +MK  + I+     LS
Sbjct: 138 GYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLS 197

Query: 183 LAMARDYASGGLINIGVLENGKPMEKLVF---TQEEVQ 217
                   +   +    +  G    ++       +E++
Sbjct: 198 KTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIK 235

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 21/220 (9%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDL- 75
           G+T I    + GV++G + R T      +   EK+ +I  +I C  SG  AD +++ +  
Sbjct: 26  GSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84

Query: 76  ----VSYHIDLDVAYGYREMNEPPLVYRAANLFQK-----IFRSNEGS--FKAAIIIAGW 124
               V++++     Y   ++N   L     +L  +            S  F  A++IAG 
Sbjct: 85  RTAAVTHNL----YYDE-DINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGH 139

Query: 125 DTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
           D   G Q++    SG   R N    GSGS      +  EW +++  +E    +   L   
Sbjct: 140 DADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQV 199

Query: 185 MARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224
           M           +  +      +      E+         
Sbjct: 200 MEEKLDENN-AQLSCITKQDGFKIY--DNEKTAELIKELK 236

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 13/187 (6%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNRE-AEKLTKISDN-IYCCRSGTAADTQAISD 74
            TT  A +++    M  D + T G  V  +  A K+ K+ +  +    +G+ AD   + +
Sbjct: 5   ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64

Query: 75  LVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYA 134
                +         E     L  RAA    K +RS++   K   ++   +      V  
Sbjct: 65  KFEAKL---------EEYNGNLK-RAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSG 114

Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
                +         GSG +Y L       +   +     +  +  L  A      +   
Sbjct: 115 T-GEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQ 173

Query: 195 INIGVLE 201
           I +  LE
Sbjct: 174 IILEELE 180

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233

 Score = 55.7 bits (135), Expect = 9e-10
 Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 22/219 (10%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAA 67
           A   V  G+T +  ++ NGV++ +D +    L         EK+  I D +    SG  A
Sbjct: 27  AREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI---EKIQLIDDYVAAVTSGLVA 83

Query: 68  DTQAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAII 120
           D + + D          +     YG   +N   LV R A+  Q+ +    G   +  ++I
Sbjct: 84  DARVLVDFARISAQQEKV----TYGS-LVNIENLVKRVADQMQQ-YTQYGGVRPYGVSLI 137

Query: 121 IAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMG 180
            AG D   G +++    +G +        GSG   ++ ++++E++ N+ ++E +      
Sbjct: 138 FAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 196

Query: 181 LSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
           L  ++           I  +  G         QEEV+ F
Sbjct: 197 LKSSLEEGE-ELKAPEIASITVGNKYRIY--DQEEVKKF 232

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 27/212 (12%), Positives = 69/212 (32%), Gaps = 14/212 (6%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V   +T I    ++GV+ G +       Y      ++L  +  ++    +G  AD ++++
Sbjct: 30  VENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLA 88

Query: 74  DL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDT 126
           D+      ++       +GY  +    L  R A      +        F  + ++  +  
Sbjct: 89  DIAREEASNFRS----NFGY-NIPLKHLADRVAMYVHA-YTLYSAVRPFGCSFMLGSYSV 142

Query: 127 VKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMA 186
             G Q+Y +  SGV         G         ++K     M  ++ +  +   + +   
Sbjct: 143 NDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHD 202

Query: 187 RDYASGGLINIGVLENGKPMEKLVFTQEEVQH 218
                   + +  +         +  ++  + 
Sbjct: 203 EVKDKAFELELSWVGELTNGRHEIVPKDIREE 234

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 39/219 (17%), Positives = 81/219 (36%), Gaps = 15/219 (6%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A   +    T +     +GV++ A+ R           +EK+ K+++++ C  +G  +D 
Sbjct: 24  AMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDA 83

Query: 70  QAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIA 122
             +++        Y +     Y    +    LV    ++ Q  +    G   F  +++  
Sbjct: 84  NVLTNELRLIAQRYLL----QYQE-PIPCEQLVTALCDIKQA-YTQFGGKRPFGVSLLYI 137

Query: 123 GWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-ANMKKQECIDFIKMGL 181
           GWD   G Q+Y    SG          G+ S+  +  + ++++   M  +  +      L
Sbjct: 138 GWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVL 197

Query: 182 SLAMARDYASGGLINIGVLENGKPMEKL-VFTQEEVQHF 219
           +  M     S   + I  L        + V  Q+EV+  
Sbjct: 198 NKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQL 236

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Length = 241

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 40/215 (18%), Positives = 88/215 (40%), Gaps = 18/215 (8%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  GT  +  + +N V++G + R+TL          K++KI  ++    SG  AD++ + 
Sbjct: 25  VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILI 84

Query: 74  DL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDT 126
           +       S+ +          +    L    A + Q+ +  + G   F  + +IAG+D 
Sbjct: 85  EKARVEAQSHRL----TLED-PVTVEYLTRYVAGVQQR-YTQSGGVRPFGVSTLIAGFDP 138

Query: 127 VKGG-QVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM 185
                ++Y    SG+ +  +    G  S  +  +++K +          + +K+ +  ++
Sbjct: 139 RDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVR-SL 197

Query: 186 ARDYASGGL-INIGVLENGKPMEKLVFTQEEVQHF 219
                +G   I I V++    +  L  + EE+  +
Sbjct: 198 LEVVQTGAKNIEITVVKPDSDIVAL--SSEEINQY 230

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 43/220 (19%), Positives = 88/220 (40%), Gaps = 24/220 (10%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAA 67
           A   V  G T I  + + GV++ AD R    L         EK+ KI ++I    SG  A
Sbjct: 27  AREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTI---EKIYKIDEHICAATSGLVA 83

Query: 68  DTQAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAII 120
           D + + D          +     Y    +    L  +  +  Q  +    G   F  +++
Sbjct: 84  DARVLIDRARIEAQINRL----TYDI-PITVKELAKKICDFKQ-QYTQYGGVRPFGVSLL 137

Query: 121 IAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMG 180
           IAG +  +  ++Y    SG L        G G   +  + +KE+R ++   + +    + 
Sbjct: 138 IAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVA 195

Query: 181 LSLAMARDYASGGLINIGVL-ENGKPMEKLVFTQEEVQHF 219
           + L++  +      I +G +  + +  +++  + EE++ +
Sbjct: 196 MGLSIESELVPEN-IEVGYVKVDDRTFKEV--SPEELKPY 232

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Length = 241

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 29/218 (13%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAAD-------- 68
           G+T I  +   GV +  + R T          EK+ +I  +I C  SG  AD        
Sbjct: 34  GSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92

Query: 69  -TQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK------IFRSNEGSFKAAIII 121
             +  +   +Y+  + V           +    +NL  +         +    F  A++ 
Sbjct: 93  RVETQNHWFTYNETMTVES---------VTQAVSNLALQFGEEDADPGAMSRPFGVALLF 143

Query: 122 AGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGL 181
            G D  KG Q++ +  SG   + +    GS S      + + +  +M  +E I    + L
Sbjct: 144 GGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIIL 202

Query: 182 SLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
              M     +   I +  ++ G+       T+EE++  
Sbjct: 203 KQVMEEKLNATN-IELATVQPGQNFHMF--TKEELEEV 237

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 37/213 (17%), Positives = 83/213 (38%), Gaps = 23/213 (10%)

Query: 17  GTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
           G+T +     + V++G + ++   L          K+  + DN+    +G  AD + + +
Sbjct: 29  GSTAVGVRGRDIVVLGVEKKSVAKLQDERTV---RKICALDDNVCMAFAGLTADARIVIN 85

Query: 75  L-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTV 127
                  S+ +          +    +    A+L Q+ +  + G   F  + +I G+D  
Sbjct: 86  RARVECQSHRL----TVED-PVTVEYITRYIASLKQR-YTQSNGRRPFGISALIVGFDFD 139

Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMAR 187
              ++Y    SG          G G+  +  +++K +     +      IK+ +  A+  
Sbjct: 140 GTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE-TDDLTIKLVIK-ALLE 197

Query: 188 DYASGGL-INIGVLENGKPMEKLVFTQEEVQHF 219
              SGG  I + V+   + ++ L    EE++ +
Sbjct: 198 VVQSGGKNIELAVMRRDQSLKIL--NPEEIEKY 228

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Length = 250

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 36/177 (20%), Positives = 71/177 (40%), Gaps = 15/177 (8%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD-- 74
           G T++  +  NGV++  + +++    + +    K++ ++ +I    SG   D + + D  
Sbjct: 31  GVTSLGIKATNGVVIATEKKSSSPLAM-SETLSKVSLLTPDIGAVYSGMGPDYRVLVDKS 89

Query: 75  ----LVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTVK 128
                 SY       YG        LV   A + Q     + G   F  +++IAG D   
Sbjct: 90  RKVAHTSYKR----IYGE-YPPTKLLVSEVAKIMQ-EATQSGGVRPFGVSLLIAGHDEFN 143

Query: 129 GGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM 185
           G  +Y +  SG          G GS     +++K W   ++ ++ I    + L  ++
Sbjct: 144 GFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESV 200

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Length = 233

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 27/223 (12%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAA 67
           A   +  G+ T+        ++ A  R    L +Y      +K+ K  +++    +G A 
Sbjct: 24  ALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQ-----KKIIKCDEHMGLSLAGLAP 78

Query: 68  DTQAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAII 120
           D + +S+          +     +   ++      +   +  QK    + G   +   ++
Sbjct: 79  DARVLSNYLRQQCNYSSL----VFNR-KLAVERAGHLLCDKAQK-NTQSYGGRPYGVGLL 132

Query: 121 IAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQE-CIDFIKM 179
           I G+D   G  +     SG +T       G+ S     Y+++     +K      + IK 
Sbjct: 133 IIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKA 191

Query: 180 G---LSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
           G   +S ++  +  +   ++I ++    P        E V  +
Sbjct: 192 GVEAISQSLRDESLTVDNLSIAIVGKDTPFTIY--DGEAVAKY 232

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233

 Score = 49.9 bits (120), Expect = 9e-08
 Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 17  GTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
           G  ++  +  NGV++  + +    L          K+  I+ +I    SG   D + +  
Sbjct: 31  GAPSVGIKAANGVVLATEKKQKSILYDERSV---HKVEPITKHIGLVYSGMGPDYRVLVH 87

Query: 75  L-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTV 127
                   Y++     Y    +    LV R A++ Q  +  + G   F  +++I GW+  
Sbjct: 88  RARKLAQQYYL----VYQE-PIPTAQLVQRVASVMQ-EYTQSGGVRPFGVSLLICGWNE- 140

Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMAR 187
               ++    SG          G        +++K +  +++ ++ I    + L  +   
Sbjct: 141 GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG 200

Query: 188 DYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
                  I +G+            T  EV+ +
Sbjct: 201 QMTEDN-IEVGICNEAG---FRRLTPTEVKDY 228

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Length = 263

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 31/215 (14%), Positives = 71/215 (33%), Gaps = 26/215 (12%)

Query: 17  GTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
           G+ T+  + +   ++ A  R    L  +      +K+  + ++I    +G  AD + + +
Sbjct: 32  GSATVGLKSKTHAVLVALKRAQSELAAHQ-----KKILHVDNHIGISIAGLTADARLLCN 86

Query: 75  L-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTV 127
                 +         +    +    LV    +  Q       G   +   ++IAG+D  
Sbjct: 87  FMRQECLDSRF----VFDR-PLPVSRLVSLIGSKTQI-PTQRYGRRPYGVGLLIAGYDD- 139

Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMK--KQECIDFIKMGLSLAM 185
            G  ++    S           G+ S     Y+++     M+    E +      L   +
Sbjct: 140 MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETL 199

Query: 186 -ARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
            A    +   ++IG++             ++V  F
Sbjct: 200 PAEQDLTTKNVSIGIVGKDLEFTIY--DDDDVSPF 232

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Length = 246

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 40/212 (18%), Positives = 85/212 (40%), Gaps = 18/212 (8%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDL- 75
           G T++A   ++  ++    +      + +     L KI++NI C  +G  AD+++     
Sbjct: 36  GLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRA 94

Query: 76  ----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTVKG 129
                ++       YGY E+    L  R A++ Q  +  N         +I+ G D  +G
Sbjct: 95  RYEAANWKY----KYGY-EIPVDMLCKRIADISQV-YTQNAEMRPLGCCMILIGIDEEQG 148

Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR--ANMKKQECIDFIKMGLSLAMAR 187
            QVY    +G          G   +    +++K+ +   +   ++ ++     LS  ++ 
Sbjct: 149 PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSI 208

Query: 188 DYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
           D+     I +GV+    P  + + T+ E+   
Sbjct: 209 DFKPSE-IEVGVVTVENPKFR-ILTEAEIDAH 238

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Length = 243

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 30/222 (13%), Positives = 67/222 (30%), Gaps = 25/222 (11%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDL- 75
              ++A   ++  ++ +  +      +       +  IS  I    +G   D +  +   
Sbjct: 30  NINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRA 88

Query: 76  ----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTVKG 129
                 +       YGY +M    L  R ANL Q I+            +     D   G
Sbjct: 89  KAEAAEFRY----KYGY-DMPCDVLAKRMANLSQ-IYTQRAYMRPLGVILTFVSVDEELG 142

Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-------ANMKKQECIDFIKMGLS 182
             +Y    +G          G     I   ++  ++            ++ ++F    + 
Sbjct: 143 PSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMI 202

Query: 183 LAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224
            A+  +++    + +GV    K       + E ++      A
Sbjct: 203 DALGTEFSKND-LEVGVATKDKFF---TLSAENIEERLVAIA 240

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 39/218 (17%), Positives = 66/218 (30%), Gaps = 27/218 (12%)

Query: 17  GTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
           GTT+I  +  +GV+   +   T  L     N    K+  +  +I C  SG   D + + +
Sbjct: 34  GTTSIGIKCNDGVVFAVEKLITSKLLVPQKN---VKIQVVDRHIGCVYSGLIPDGRHLVN 90

Query: 75  L-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTV 127
                  S+       Y    +  P    R     Q           F  + I  G D  
Sbjct: 91  RGREEAASFKK----LYKT-PIPIPAFADRLGQYVQA-HTLYNSVRPFGVSTIFGGVDK- 143

Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK---EWRANMKKQECIDFIKMGLSLA 184
            G  +Y L  SG       A  G G       ++K        +  +E +      + LA
Sbjct: 144 NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLA 203

Query: 185 MARDYASGGLINIGVL---ENGKPMEKLVFTQEEVQHF 219
              +      + I      E     + +    + +Q  
Sbjct: 204 HEDNKEKDFELEISWCSLSETNGLHKFV--KGDLLQEA 239

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 22/212 (10%)

Query: 17  GTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
           GTT+I  +  +GV+   +   T  L     N    K+  +  +I C  SG   D + + +
Sbjct: 30  GTTSIGIKCNDGVVFAVEKLITSKLLVPQKN---VKIQVVDRHIGCVYSGLIPDGRHLVN 86

Query: 75  L-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTV 127
                  S+       Y    +  P    R     Q           F  + I  G D  
Sbjct: 87  RGREEAASFKK----LYKT-PIPIPAFADRLGQYVQA-HTLYNSVRPFGVSTIFGGVDK- 139

Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGL---SLA 184
            G  +Y L  SG       A  G G       ++K    + +     + +K       LA
Sbjct: 140 NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLA 199

Query: 185 MARDYASGGLINIGVLENGKPMEKLVFTQEEV 216
              +      + I      +      F + ++
Sbjct: 200 HEDNKEKDFELEISWCSLSETNGLHKFVKGDL 231

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	100.0
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	100.0
1iru_H	205	20S proteasome; cell cycle, immune response, prote	100.0
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	100.0
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	100.0
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_A	246	20S proteasome; cell cycle, immune response, prote	100.0
1iru_B	233	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_N	219	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_C	261	20S proteasome; cell cycle, immune response, prote	100.0
1iru_L	204	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_E	241	20S proteasome; cell cycle, immune response, prote	100.0
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	100.0
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	100.0
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	100.0
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	100.0
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	100.0
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	100.0
1iru_M	213	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	100.0
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	100.0
1iru_G	254	20S proteasome; cell cycle, immune response, prote	100.0
1iru_D	248	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	100.0
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	100.0
1iru_J	205	20S proteasome; cell cycle, immune response, prote	100.0
1iru_F	263	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	100.0
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	100.0
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	100.0
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	100.0
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	100.0
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_I	234	20S proteasome; cell cycle, immune response, prote	100.0
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	100.0
1iru_K	201	20S proteasome; cell cycle, immune response, prote	100.0
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	100.0
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	100.0
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	100.0
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	100.0

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=4.4e-49  Score=323.54  Aligned_cols=202  Identities=28%  Similarity=0.426  Sum_probs=193.3

Q ss_pred             CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      |+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+    ++++++++
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~   76 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYK----MRTGRNIP   76 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHH----HHTSSCCC
T ss_pred             CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHH----HHcCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeee-eEEecCChHHHHHHHhhhhcCCCCHHHHH
Q psy8684          97 VYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQN-CAVGGSGSSYILGYVDKEWRANMKKQECI  174 (226)
Q Consensus        97 ~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~-~~a~Gsg~~~~~~~Le~~~~~~~s~~eai  174 (226)
                      ++.+++++++++|.++ +||++++|+||||+++||+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||++||+
T Consensus        77 v~~la~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~  156 (219)
T 3h4p_a           77 PLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGI  156 (219)
T ss_dssp             HHHHHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            9999999999999885 599999999999986789999999999999988 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684         175 DFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       175 ~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      +++++||..+.++|..++++++|++|+++|   ++.|+++||+++|..++.
T Consensus       157 ~la~~al~~~~~rd~~sg~~i~v~vi~~~g---~~~l~~~ei~~~l~~~~~  204 (219)
T 3h4p_a          157 KLALNALKSAMERDTFSGNGISLAVITKDG---VKIFEDEEIEKILDSMKA  204 (219)
T ss_dssp             HHHHHHHHHHHTSCSSCCSCCCEEEEETTE---EEECCHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEEeCCC---eEEcCHHHHHHHHHHhhc
Confidence            999999999999999999999999999998   568999999999998764

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=100.00  E-value=9e-49  Score=321.26  Aligned_cols=204  Identities=20%  Similarity=0.378  Sum_probs=190.7

Q ss_pred             ccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccccc
Q psy8684          12 TEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREM   91 (226)
Q Consensus        12 ~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~   91 (226)
                      .++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++|++++||..+|++.+.++++.+++.|+    +++
T Consensus         3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~   78 (217)
T 1yar_H            3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYR----LQR   78 (217)
T ss_dssp             ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred             CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHH----HHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999    999


Q ss_pred             CCCCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCH
Q psy8684          92 NEPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKK  170 (226)
Q Consensus        92 ~~~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~  170 (226)
                      +++++++.+++++++++|.+| +||++++|+||||  .||+||.+||+|++.+++++|+|+|+++++++||+.|+++||+
T Consensus        79 ~~~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~  156 (217)
T 1yar_H           79 RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTV  156 (217)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCH
Confidence            999999999999999999876 5999999999999  6799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC-CCCeEEEEeChhhHhhHhhccC
Q psy8684         171 QECIDFIKMGLSLAMARDYASGGLINIGVLEN-GKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       171 ~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~-~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +||++++++||..+.++|..+++++++++|++ +|   ++.++++||+.++..++
T Consensus       157 eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g---~~~~~~~ei~~~~~~~~  208 (217)
T 1yar_H          157 DEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDG---YVQLPTDQIESRIRKLG  208 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTE---EEECCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCC---EEEcCHHHHHHHHHHHH
Confidence            99999999999999999998999999999999 66   46799999999998765

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=100.00  E-value=8.2e-49  Score=318.78  Aligned_cols=200  Identities=48%  Similarity=0.865  Sum_probs=194.1

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.+++.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v   76 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHS----IELNEPPLV   76 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHTSCCCH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence            6899999999999999999999889999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI  177 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la  177 (226)
                      +.+++++++++|.+++||++++|+||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+++||++||++++
T Consensus        77 ~~la~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~  156 (205)
T 1iru_H           77 HTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFT  156 (205)
T ss_dssp             HHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999999999999999999999998678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684         178 KMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNH  222 (226)
Q Consensus       178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~  222 (226)
                      ++||..+.++|..+++++++++|+++| +.++.++++||+.++++
T Consensus       157 ~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~l~~~ei~~~~~~  200 (205)
T 1iru_H          157 ANALALAMERDGSSGGVIRLAAIAESG-VERQVLLGDQIPKFAVA  200 (205)
T ss_dssp             HHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEECGGGSCCCCCC
T ss_pred             HHHHHHHHHhccccCCcEEEEEEeCCC-eEEEEeChHHhhHHHhh
Confidence            999999999999899999999999999 88889999999999876

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=100.00  E-value=4.9e-48  Score=313.53  Aligned_cols=199  Identities=23%  Similarity=0.404  Sum_probs=191.8

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYE----IRRERKPTV   76 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred             CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHH----HHHCCCCCH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeee-eEEecCChHHHHHHHhhhhcCCCCHHHHHH
Q psy8684          98 YRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQN-CAVGGSGSSYILGYVDKEWRANMKKQECID  175 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~-~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~  175 (226)
                      +.+++++++++|.+| +||++++|+||||+ +||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||++||++
T Consensus        77 ~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~  155 (202)
T 1j2q_H           77 RAIATLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVE  155 (202)
T ss_dssp             HHHHHHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHH
Confidence            999999999999876 59999999999998 789999999999999999 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         176 FIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       176 la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      ++++||..+.++|..+++++++++|+++|   ++.++++||++++..++
T Consensus       156 la~~al~~~~~~d~~s~~~i~v~vi~~~g---~~~l~~~ei~~~~~~~~  201 (202)
T 1j2q_H          156 LAVRAIYSAMKRDSASGDGIDVVKITEDE---FYQYSPEEVEQILAKFR  201 (202)
T ss_dssp             HHHHHHHHHHTTCTTSCSCEEEEEECSSC---EEECHHHHHHHHGGGTT
T ss_pred             HHHHHHHHHHhcCCCCCCcEEEEEEeCCC---eEEeCHHHHHHHHHHhh
Confidence            99999999999999899999999999998   46799999999999875

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=100.00  E-value=1.2e-48  Score=325.64  Aligned_cols=206  Identities=10%  Similarity=0.080  Sum_probs=195.8

Q ss_pred             CccccC-CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc
Q psy8684          11 GTEVTC-GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR   89 (226)
Q Consensus        11 ~~ai~~-gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   89 (226)
                      .||+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+    +
T Consensus        23 ~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~----~   97 (243)
T 1ryp_A           23 FKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFR----Y   97 (243)
T ss_dssp             HHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHH----H
T ss_pred             HHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHH----H
Confidence            689999 9999999999999999999999 688889999999999999999999999999999999999999999    9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhh
Q psy8684          90 EMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEW  164 (226)
Q Consensus        90 ~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~  164 (226)
                      +++++++++.+|+++++++|.|     .+||++++|+||||+++||+||.+||+|++.+++++|+|+|++.++++||+.|
T Consensus        98 ~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~  177 (243)
T 1ryp_A           98 KYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHF  177 (243)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHh
Confidence            9999999999999999999654     36999999999999767899999999999999999999999999999999999


Q ss_pred             cC-------CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684         165 RA-------NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       165 ~~-------~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      ++       +||++||++++++||..+.++| .++++++|++|+++|   ++.++++||++++..+++
T Consensus       178 ~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g---~~~l~~~ei~~~~~~~~~  241 (243)
T 1ryp_A          178 KKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK---FFTLSAENIEERLVAIAE  241 (243)
T ss_dssp             HHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE---EEECCHHHHHHHHHHHTT
T ss_pred             hhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC---eEECCHHHHHHHHHHhhc
Confidence            99       9999999999999999999999 689999999999998   578999999999998864

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=100.00  E-value=1.4e-48  Score=331.48  Aligned_cols=207  Identities=21%  Similarity=0.357  Sum_probs=192.8

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      +.++.+|||+|||+++||||||+|+|.+.|.++.+++.+||++|++||+++++|..+|++.+.++++.+++.|+    ++
T Consensus        69 ~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~----~~  144 (287)
T 3nzj_K           69 KIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHE----LR  144 (287)
T ss_dssp             -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             hhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHH----HH
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCC
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMK  169 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s  169 (226)
                      ++++++++.+++++++++|.+|. ||++++|+||||+++||+||.+||.|++.++++.|+|+|+.+++++|++.|+++||
T Consensus       145 ~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms  224 (287)
T 3nzj_K          145 EKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLS  224 (287)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCC
T ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCC
Confidence            99999999999999999999875 99999999999966899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         170 KQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       170 ~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      ++||++++++||..+.++|..++++++|++|+++|   ++.++++||++++.+++
T Consensus       225 ~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg---~~~l~~~ev~~~l~~~~  276 (287)
T 3nzj_K          225 VEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG---WIYHGNHDVGELFWKVK  276 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE---EEEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC---EEEeCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998   46799999999887664

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=100.00  E-value=8e-48  Score=312.99  Aligned_cols=197  Identities=44%  Similarity=0.803  Sum_probs=189.4

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+++++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+   
T Consensus         1 ~~-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~---   76 (205)
T 1ryp_H            1 LK-KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYT---   76 (205)
T ss_dssp             CC-TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH---
T ss_pred             CC-CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHH---
Confidence            44 79999999999999999999999999999889999999999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCC
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRAN  167 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~  167 (226)
                       +++++ ++++.+++++++++|.+|..|++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++
T Consensus        77 -~~~~~-~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~  154 (205)
T 1ryp_H           77 -SQYGT-PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFREN  154 (205)
T ss_dssp             -HHHSS-CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTT
T ss_pred             -HHhCC-CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCC
Confidence             99999 9999999999999999987899999999999767899999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684         168 MKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF  211 (226)
Q Consensus       168 ~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l  211 (226)
                      ||++||++++++||..+.++|..+++++++++|+++| +.++.+
T Consensus       155 ~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g-~~~~~~  197 (205)
T 1ryp_H          155 MSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAG-VERLIF  197 (205)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCC-EEEEEe
Confidence            9999999999999999999999999999999999999 776666

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=100.00  E-value=2.1e-48  Score=324.69  Aligned_cols=208  Identities=16%  Similarity=0.205  Sum_probs=196.9

Q ss_pred             CccccC-CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc
Q psy8684          11 GTEVTC-GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR   89 (226)
Q Consensus        11 ~~ai~~-gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   89 (226)
                      .+|+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    +
T Consensus        29 ~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~  103 (246)
T 1iru_A           29 FKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWK----Y  103 (246)
T ss_dssp             HHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH----H
T ss_pred             HHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHH----H
Confidence            478888 9999999999999999999999 578888999999999999999999999999999999999999999    9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhh
Q psy8684          90 EMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEW  164 (226)
Q Consensus        90 ~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~  164 (226)
                      +++++++++.+++++++++|.|+     +||++++|+||||+++||+||.+||+|++.+++++|+|+|+++++++||+.|
T Consensus       104 ~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~  183 (246)
T 1iru_A          104 KYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV  183 (246)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHT
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhh
Confidence            99999999999999999976553     5999999999999767899999999999999999999999999999999999


Q ss_pred             cC--CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684         165 RA--NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       165 ~~--~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      ++  +|+++||++++++||..+.++| .++++++|++|+++| ++++.++++||++++..+++
T Consensus       184 ~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g-~~~~~l~~~ei~~~~~~~~~  244 (246)
T 1iru_A          184 KKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVEN-PKFRILTEAEIDAHLVALAE  244 (246)
T ss_dssp             TSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTE-EEEEECCHHHHHHHHHHHHT
T ss_pred             cccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC-CeEEECCHHHHHHHHHHhhc
Confidence            99  9999999999999999999999 789999999999999 87889999999999988753

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=100.00  E-value=1.8e-48  Score=322.69  Aligned_cols=204  Identities=15%  Similarity=0.237  Sum_probs=194.5

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    ++
T Consensus        25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~   99 (233)
T 1iru_B           25 LAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYY----LV   99 (233)
T ss_dssp             HHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHH----HH
Confidence            7889999999999999999999999998 478888999999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~  165 (226)
                      ++++++++.+++++++++|.|+     +||++++|+||||+ .||+||.+||.|++.+++++|+|+|+++++++||+.|+
T Consensus       100 ~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~  178 (233)
T 1iru_B          100 YQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN  178 (233)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred             HCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhc
Confidence            9999999999999999998774     59999999999996 78999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      ++||++||++++++||..+.++| .++++++|++|+++|   ++.++++||+.++..++
T Consensus       179 ~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g---~~~l~~~ei~~~~~~~~  233 (233)
T 1iru_B          179 EDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAG---FRRLTPTEVKDYLAAIA  233 (233)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTE---EEECCHHHHHHHHTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCC---EEECCHHHHHHHHHhcC
Confidence            99999999999999999999999 678999999999998   56899999999998875

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=100.00  E-value=2.7e-48  Score=323.66  Aligned_cols=209  Identities=19%  Similarity=0.258  Sum_probs=196.5

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    ++
T Consensus        25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~  100 (244)
T 1ryp_C           25 LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYL----KT  100 (244)
T ss_dssp             HHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHH----HH
Confidence            68899999999999999999999999999877668899999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684          91 MNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~  165 (226)
                      ++++++++.+++++++++|.+     .+||++++|+||||.+++|+||.+||.|++.+++++|+|+|+++++++||+.|+
T Consensus       101 ~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~  180 (244)
T 1ryp_C          101 YNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK  180 (244)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred             HCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhh
Confidence            999999999999999999865     359999999999994489999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc--CCCCeE--EEEeChhhHhhHhhccC
Q psy8684         166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLE--NGKPME--KLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~--~~g~~~--~~~l~~~ei~~~~~~~~  224 (226)
                      ++|+++||++++++||..+.++|..+++++++++|+  ++| ..  ++.|+++||++++..+.
T Consensus       181 ~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~-~~~~~~~l~~~ei~~~~~~~~  242 (244)
T 1ryp_C          181 DDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND-GEVYQKIFKPQEIKDILVKTG  242 (244)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSS-SSCEEEECCHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCC-CceeEEECCHHHHHHHHHHhh
Confidence            999999999999999999999955578999999999  988 53  78999999999998764

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=100.00  E-value=2e-48  Score=322.39  Aligned_cols=207  Identities=18%  Similarity=0.223  Sum_probs=196.4

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc-
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR-   89 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-   89 (226)
                      ++++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+    + 
T Consensus         2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~   77 (233)
T 1ryp_N            2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENA----YD   77 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH----TT
T ss_pred             cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHh----hc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999    8 


Q ss_pred             ----ccCCCCCHHHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          90 ----EMNEPPLVYRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        90 ----~~~~~~~~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                          +++++++++.++++++++++.++   +||++++|+||||++++|+||.+||.|++.+++++|+|+|+++++++||+
T Consensus        78 ~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~  157 (233)
T 1ryp_N           78 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRK  157 (233)
T ss_dssp             CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTT
T ss_pred             cchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHH
Confidence                89999999999999999998765   69999999999998669999999999999999999999999999999999


Q ss_pred             hhcC-----CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CCeEEEEeChhhHhhH-hhccCC
Q psy8684         163 EWRA-----NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENG-KPMEKLVFTQEEVQHF-FNHEAT  225 (226)
Q Consensus       163 ~~~~-----~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~-g~~~~~~l~~~ei~~~-~~~~~~  225 (226)
                      .|++     +||++||++++++||..+.++|..++++++|++|+++ | +  +.++++||+.+ | ++++
T Consensus       158 ~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-~--~~~~~~~i~~~~w-~~~~  223 (233)
T 1ryp_N          158 VVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-L--TFKKNLQVENMKW-DFAK  223 (233)
T ss_dssp             TCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-E--EEEEEEECCSCCC-GGGG
T ss_pred             hhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-e--EEcChHhcccccc-hhhh
Confidence            9999     9999999999999999999999999999999999999 7 4  57899999999 7 3443

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=100.00  E-value=3.6e-48  Score=318.05  Aligned_cols=203  Identities=13%  Similarity=0.168  Sum_probs=194.4

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc-
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR-   89 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-   89 (226)
                      ++|+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+++++|..+|++.+.++++.+++.|+    + 
T Consensus         2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~   77 (219)
T 1iru_N            2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE----LL   77 (219)
T ss_dssp             CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHH----HH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999998    7 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcC
Q psy8684          90 EMNEPPLVYRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA  166 (226)
Q Consensus        90 ~~~~~~~~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~  166 (226)
                      +++++++++.++++++++++.++   +||++++|+||||+ ++|+||.+||.|++.+++++|+|+|+++++++||+.|++
T Consensus        78 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~  156 (219)
T 1iru_N           78 GDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEK  156 (219)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTS
T ss_pred             HcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCC
Confidence            89999999999999999998764   69999999999998 699999999999999999999999999999999999999


Q ss_pred             --CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684         167 --NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN  221 (226)
Q Consensus       167 --~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~  221 (226)
                        +||++||++++++||..+.++|..+++++++++|+++| +  +.++++||+..|.
T Consensus       157 ~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-~--~~~~~~~i~~~~~  210 (219)
T 1iru_N          157 QPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-V--EIEGPLSTETNWD  210 (219)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-E--EEEEEECCCCCCG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-E--EEcCCeeccchhh
Confidence              99999999999999999999999999999999999998 4  5789999999874

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=100.00  E-value=2.6e-48  Score=323.39  Aligned_cols=206  Identities=20%  Similarity=0.241  Sum_probs=195.3

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+++.++ +++.+||++|++||+|++||..+|++.+.++++.+++.|+    ++
T Consensus        20 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~   94 (242)
T 1ryp_E           20 LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHN----LY   94 (242)
T ss_dssp             HHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHH----HH
Confidence            678999999999999999999999999998766 8899999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhc-----------cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHH
Q psy8684          91 MNEPPLVYRAANLFQKIFRSN-----------EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGY  159 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~-----------~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~  159 (226)
                      ++++++++.+++.+++++|.+           .|||++++|+||||++++|+||.+||.|++.+++++|+|+|+.+++++
T Consensus        95 ~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~  174 (242)
T 1ryp_E           95 YDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAE  174 (242)
T ss_dssp             HSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred             HCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHH
Confidence            999999999999999999875           569999999999995579999999999999999999999999999999


Q ss_pred             HhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         160 VDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       160 Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      |++.|+++||++||++++++||..+.++ ..++++++|++|+++| . ++.++++||++++..+.
T Consensus       175 Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~-~-~~~~~~~ei~~~~~~~~  236 (242)
T 1ryp_E          175 LLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQD-G-FKIYDNEKTAELIKELK  236 (242)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTT-E-EEECCHHHHHHHHHHHH
T ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCC-C-eEECCHHHHHHHHHHHh
Confidence            9999999999999999999999999998 5678999999999999 6 78899999999998763

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=100.00  E-value=2.5e-48  Score=326.89  Aligned_cols=210  Identities=17%  Similarity=0.246  Sum_probs=199.1

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|||+|||+++||||||+|+|.+++.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    ++
T Consensus        25 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~  100 (261)
T 1iru_C           25 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYL----LQ  100 (261)
T ss_dssp             HHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHH----HH
Confidence            57899999999999999999999999999988888789999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~  165 (226)
                      ++++++++.+++++++++|.++     +||++++|+||||+.++|+||.+||.|++.+++++|+|+|+.+++++|++.|+
T Consensus       101 ~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~  180 (261)
T 1iru_C          101 YQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK  180 (261)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCC
T ss_pred             HCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhc
Confidence            9999999999999999999875     59999999999997578999999999999999999999999999999999999


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCe-EEEEeChhhHhhHhhccC
Q psy8684         166 A-NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPM-EKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       166 ~-~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~-~~~~l~~~ei~~~~~~~~  224 (226)
                      + +||++||++++++||..+.++|..++++++|++|+++|+. .++.|+++||+.++..+.
T Consensus       181 ~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~  241 (261)
T 1iru_C          181 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHE  241 (261)
T ss_dssp             TTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHH
Confidence            9 9999999999999999999999999999999999998722 378899999999998774

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=100.00  E-value=1.9e-47  Score=310.54  Aligned_cols=199  Identities=24%  Similarity=0.402  Sum_probs=191.6

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v   76 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYE----LRNKERISV   76 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHH----HHHCCCCCH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      +.+++++++++|.+|. ||++++|+||||+ .||+||.+||+|++.++++.|+|+|+++++++||+.|+++||++||+++
T Consensus        77 ~~la~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l  155 (204)
T 1iru_L           77 AAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL  155 (204)
T ss_dssp             HHHHHHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHH
Confidence            9999999999999875 8999999999998 7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +++||..+.++|..+++++++++|+++| +  +.++++||++++.++.
T Consensus       156 ~~~al~~~~~rd~~s~~~i~v~vi~~~g-~--~~l~~~ei~~~~~~~~  200 (204)
T 1iru_L          156 ARRAIYQATYRDAYSGGAVNLYHVREDG-W--IRVSSDNVADLHEKYS  200 (204)
T ss_dssp             HHHHHHHHHHHBTTCCSEEEEEEECSSC-E--EEEEEEEHHHHHHHHT
T ss_pred             HHHHHHHHHHhCccCCCceEEEEEeCCc-e--EEeCHHHHHHHHHHhc
Confidence            9999999999999899999999999998 4  5799999999998764

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=100.00  E-value=8.3e-48  Score=314.42  Aligned_cols=200  Identities=21%  Similarity=0.355  Sum_probs=191.6

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v   76 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHE----LREKERISV   76 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHH----HHcCCCCCH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      +.+++++++++|.+++ ||++++|+||||++++|+||.+||+|++.++++.|+|+|+++++++|++.|+++||++||+++
T Consensus        77 ~~la~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l  156 (212)
T 1ryp_L           77 AAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL  156 (212)
T ss_dssp             HHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence            9999999999999876 999999999999657999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +++||..+.++|..+++++++++|+++|   ++.++++||++++.+++
T Consensus       157 a~~al~~~~~rd~~s~~~i~v~vi~~~g---~~~~~~~ei~~~~~~~~  201 (212)
T 1ryp_L          157 GKRSILAAAHRDAYSGGSVNLYHVTEDG---WIYHGNHDVGELFWKVK  201 (212)
T ss_dssp             HHHHHHHHHHHBTTCCSEEEEEEEETTE---EEEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCceEEEEEcCCc---eEEECHHHHHHHHHHHH
Confidence            9999999999999999999999999998   45799999999977654

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=100.00  E-value=3.9e-48  Score=322.21  Aligned_cols=204  Identities=21%  Similarity=0.271  Sum_probs=193.9

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|||+|||+++||||||+|+|.++|.++ +++.+||++|++||++++||..+|++.+.++++.+++.|+    ++
T Consensus        28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~  102 (241)
T 1iru_E           28 IEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHW----FT  102 (241)
T ss_dssp             HHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHH----HH
Confidence            678999999999999999999999999998776 8899999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhc----------cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHH
Q psy8684          91 MNEPPLVYRAANLFQKIFRSN----------EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYV  160 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~----------~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~L  160 (226)
                      ++++++++.+++++++++|.|          .|||++++|+||||. ++|+||.+||.|++.+++++|+|+|+++++++|
T Consensus       103 ~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L  181 (241)
T 1iru_E          103 YNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSL  181 (241)
T ss_dssp             HSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHH
T ss_pred             hCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcHHHHHHH
Confidence            999999999999999999776          459999999999995 899999999999999999999999999999999


Q ss_pred             hhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684         161 DKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       161 e~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~  223 (226)
                      |+.|+++||++||++++++||..+.++ ..++++++|.+|+++| . ++.++++||++++..+
T Consensus       182 e~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~-~-~~~l~~~ei~~~~~~~  241 (241)
T 1iru_E          182 QELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQ-N-FHMFTKEELEEVIKDI  241 (241)
T ss_dssp             HHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSS-C-CEECCHHHHHHHHTTC
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCC-C-eEECCHHHHHHHHHhC
Confidence            999999999999999999999999998 6679999999999999 5 7889999999999764

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=100.00  E-value=1.3e-47  Score=310.33  Aligned_cols=198  Identities=41%  Similarity=0.738  Sum_probs=189.5

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v   76 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHG----LELEEPPLV   76 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHH----HHTTSCCCH
T ss_pred             CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence            7999999999999999999999989999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCcee-eeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLT-RQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      +.+++++++++|++++||++++|+||||++++|+||.  |+|++. +.+++++|+|+++++++||+.|+++||++||+++
T Consensus        77 ~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~l  154 (199)
T 3unf_N           77 LAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRF  154 (199)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence            9999999999999999999999999999867899999  999865 5667778999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNH  222 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~  222 (226)
                      +++||..+.++|..++++++|++|+++| +.++.|+++||+.+|++
T Consensus       155 a~~al~~~~~~d~~sg~~i~v~vi~~~g-~~~~~l~~~ei~~~~~~  199 (199)
T 3unf_N          155 TTNAITLAMNRDGSSGGVIYLVTITAAG-VDHRVILGDELPKFYDE  199 (199)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEEEEECSSC-EEEEEECGGGSCCCCCC
T ss_pred             HHHHHHHHHHhccccCCCeEEEEEcCCC-EEEEEcCcccCcccccC
Confidence            9999999999999999999999999999 88999999999998864

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=100.00  E-value=4.7e-48  Score=320.18  Aligned_cols=201  Identities=18%  Similarity=0.328  Sum_probs=191.6

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    ++
T Consensus        28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~  102 (233)
T 1yar_A           28 REAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEK----VT  102 (233)
T ss_dssp             HHHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHH----HH
Confidence            578999999999999999999999999995 6778899999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~  165 (226)
                      ++++++++.+|+++++++|.++     |||++++|+||||+ ++|+||.+||.|++.+++++|+|+|+++++++||+.|+
T Consensus       103 ~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~  181 (233)
T 1yar_A          103 YGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK  181 (233)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred             HCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhc
Confidence            9999999999999999999775     49999999999998 78999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684         166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF  220 (226)
Q Consensus       166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~  220 (226)
                      ++||++||++++++||..+.++|. +++++++++|+++| . ++.++++||++++
T Consensus       182 ~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~-~-~~~~~~~ei~~~l  233 (233)
T 1yar_A          182 ENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGN-K-YRIYDQEEVKKFL  233 (233)
T ss_dssp             TTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTS-C-CEECCHHHHHTTC
T ss_pred             cCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCC-C-EEECCHHHHHhhC
Confidence            999999999999999999999998 68999999999998 4 6789999999875

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=6.7e-48  Score=324.42  Aligned_cols=205  Identities=21%  Similarity=0.305  Sum_probs=195.0

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++||+|++||..+|++.++++++.+++.|+    ++
T Consensus        32 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~----~~  106 (264)
T 3h4p_A           32 REAVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYR----LT  106 (264)
T ss_dssp             HHHHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHH----HT
T ss_pred             HHHHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhH----Hh
Confidence            689999999999999999999999999985 7788999999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~  165 (226)
                      ++.+++++.+|+.+++++|.|+     +||++++|+||||+ +||+||.+||+|++.+++++|+|+|+.+++++|++.|+
T Consensus       107 ~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~  185 (264)
T 3h4p_A          107 YGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR  185 (264)
T ss_dssp             TCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhcc
Confidence            9999999999999999998774     49999999999997 78999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      ++||++||++++++||..+.++  .++++++|++|++++ ..++.++++||+.++..+.
T Consensus       186 ~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~-~~~~~l~~~ei~~~~~~~~  241 (264)
T 3h4p_A          186 DDITLDEGLELAITALTKANED--IKPENVDVCIITVKD-AQFKKIPVEEIKKLIEKVK  241 (264)
T ss_dssp             TTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTT-TEEEECCTTTTGGGTTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCC-CcEEECCHHHHHHHHHHHH
Confidence            9999999999999999999987  688999999999987 5688999999999998875

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=100.00  E-value=4.6e-47  Score=315.72  Aligned_cols=205  Identities=18%  Similarity=0.289  Sum_probs=193.7

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    ++
T Consensus        22 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~   97 (241)
T 1ryp_D           22 LEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHR----LT   97 (241)
T ss_dssp             HHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHH----HH
Confidence            68999999999999999999999999999887777799999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCC-CCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhh
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTV-KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEW  164 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~-~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~  164 (226)
                      ++++++++.+|+++++++|.++     |||++++|+||||++ ++|+||.+||.|++.+++++|+|+|+++++++|++.|
T Consensus        98 ~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~  177 (241)
T 1ryp_D           98 LEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNY  177 (241)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTC
T ss_pred             HCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhh
Confidence            9999999999999999999763     599999999999975 7899999999999999999999999999999999999


Q ss_pred             ---cCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         165 ---RANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       165 ---~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                         +++||++||++++++||..+.+   .++++++|++|++++ . ++.++++||++++..+.
T Consensus       178 ~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~-~-~~~l~~~ei~~~~~~~~  235 (241)
T 1ryp_D          178 DRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDS-D-IVALSSEEINQYVTQIE  235 (241)
T ss_dssp             CTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTT-E-EEECCHHHHHHHHHHHT
T ss_pred             hcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCC-c-EEECCHHHHHHHHHHHh
Confidence               9999999999999999999986   578999999999997 3 67899999999998764

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=100.00  E-value=6e-47  Score=317.82  Aligned_cols=193  Identities=29%  Similarity=0.512  Sum_probs=178.9

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      -|.++||+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+  
T Consensus        19 ~~~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~--   96 (261)
T 3nzj_H           19 SHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHS--   96 (261)
T ss_dssp             -----------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH--
T ss_pred             CCCCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhH--
Confidence            345689999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcC
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA  166 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~  166 (226)
                        ++++++++++.+++++++.++++++||++++|+||||+ .||+||.+||+|++.+++++|+|+|++.++++||+.|++
T Consensus        97 --~~~~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~  173 (261)
T 3nzj_H           97 --LYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ  173 (261)
T ss_dssp             --HHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCS
T ss_pred             --HhhCCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhcc
Confidence              99999999999999999999999999999999999998 789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684         167 NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK  204 (226)
Q Consensus       167 ~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g  204 (226)
                      +||++||++++++||..+.++|..++++++|++|+++|
T Consensus       174 ~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg  211 (261)
T 3nzj_H          174 DLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK  211 (261)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence            99999999999999999999999999999999999998

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=100.00  E-value=6.6e-47  Score=313.17  Aligned_cols=196  Identities=23%  Similarity=0.426  Sum_probs=188.8

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v   76 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHA----LSTGREPRV   76 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHHCSCCCH
T ss_pred             CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhH----HhcCCCCCH
Confidence            7999999999999999999999988889999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI  177 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la  177 (226)
                      +.++++++++++++++||++++|+||||+ .||+||.+||+|++.++++.|+|+|+.+++++||+.|+++|+++||++++
T Consensus        77 ~~la~~l~~~l~~~~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la  155 (234)
T 3unf_H           77 ATVTRILRQTLFRYQGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELL  155 (234)
T ss_dssp             HHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHH
Confidence            99999999999999999999999999998 78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684         178 KMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN  221 (226)
Q Consensus       178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~  221 (226)
                      ++||..+.++|..+++++++++|+++| +  +.+++.|++.-|.
T Consensus       156 ~~al~~~~~~D~~sg~~iev~vi~~dg-~--~~l~~~~i~~~~~  196 (234)
T 3unf_H          156 VEAITAGILSDLGSGGNVDACVITAGG-A--KLQRALSTPTEPV  196 (234)
T ss_dssp             HHHHHHHHHHBTTCCSCEEEEEEESSC-E--EEEEEEECCCCCC
T ss_pred             HHHHHHHHhhcCCCCCcEEEEEEECCC-E--EEeCceecccccc
Confidence            999999999999999999999999998 4  5789998887664

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=100.00  E-value=1.2e-46  Score=320.63  Aligned_cols=208  Identities=19%  Similarity=0.255  Sum_probs=195.2

Q ss_pred             CCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc
Q psy8684          10 AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR   89 (226)
Q Consensus        10 ~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   89 (226)
                      +.+|+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|+++|..+|++.++++++.+++.|+    +
T Consensus        58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~----~  133 (294)
T 1q5r_H           58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYE----K  133 (294)
T ss_dssp             --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH----H
T ss_pred             HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhh----H
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999999    9


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcc----CCceeEEEEEEEeCCCC-----eEEEEECCCCceeee--eeEEecCChHHHHH
Q psy8684          90 EMNEPPLVYRAANLFQKIFRSNE----GSFKAAIIIAGWDTVKG-----GQVYALPASGVLTRQ--NCAVGGSGSSYILG  158 (226)
Q Consensus        90 ~~~~~~~~~~~a~~l~~~~~~~~----~p~~v~~liaG~d~~~~-----p~ly~id~~G~~~~~--~~~a~Gsg~~~~~~  158 (226)
                      +++++++++.+++.+++++|.++    +||++++|+||||.+++     |+||.+||.|++.++  +++|+|+|++++++
T Consensus       134 ~~g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~  213 (294)
T 1q5r_H          134 IEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKS  213 (294)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHH
T ss_pred             hhCCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHH
Confidence            99999999999999999998763    69999999999998657     999999999999988  99999999999999


Q ss_pred             HHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         159 YVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL--I-----NIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       159 ~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~--i-----~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +|++.|+++|+++||++++++||..+.++|..+++.  +     +|++|+++| +  +.++++||++++.++.
T Consensus       214 ~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g-~--~~l~~~ei~~~l~~i~  283 (294)
T 1q5r_H          214 ALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-A--VHVSEETTSELARRIV  283 (294)
T ss_dssp             HHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-E--EECCHHHHHHHHHHHC
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC-E--EEcCHHHHHHHHHHHH
Confidence            999999999999999999999999999999987654  6     999999988 4  5799999999998775

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=100.00  E-value=4.9e-46  Score=304.06  Aligned_cols=194  Identities=21%  Similarity=0.276  Sum_probs=184.0

Q ss_pred             cccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684          13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN   92 (226)
Q Consensus        13 ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   92 (226)
                      -+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    ++++
T Consensus         5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~   80 (213)
T 1iru_M            5 YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYK----HSNN   80 (213)
T ss_dssp             CCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHS
T ss_pred             ccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHH----HhcC
Confidence            367999999999999999999999999998888999999999999999999999999999999999999999    9999


Q ss_pred             CCCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhh--------
Q psy8684          93 EPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKE--------  163 (226)
Q Consensus        93 ~~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~--------  163 (226)
                      ++++++.+|++++++++..+ +||++++|+||||++++|+||.+||.|++.+++++|+|+|+++++++||+.        
T Consensus        81 ~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~  160 (213)
T 1iru_M           81 KAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN  160 (213)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred             CCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccc
Confidence            99999999999999998665 699999999999975679999999999999999999999999999999999        


Q ss_pred             -hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684         164 -WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF  211 (226)
Q Consensus       164 -~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l  211 (226)
                       |+++||++||++++++||..+.++|..++++++|++|+++| +..+.+
T Consensus       161 ~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~  208 (213)
T 1iru_M          161 VEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IREETV  208 (213)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EEEEEE
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC-eEEEEe
Confidence             88899999999999999999999999999999999999999 765544

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=100.00  E-value=6.2e-46  Score=305.40  Aligned_cols=194  Identities=22%  Similarity=0.304  Sum_probs=184.7

Q ss_pred             cccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684          13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN   92 (226)
Q Consensus        13 ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   92 (226)
                      .+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++|++++||.++|++.+.++++.+++.|+    ++++
T Consensus         5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~   80 (222)
T 1ryp_M            5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYH----FDHN   80 (222)
T ss_dssp             CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHTT
T ss_pred             cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHH----HHcC
Confidence            578999999999999999999999999998899999999999999999999999999999999999999999    9999


Q ss_pred             -CCCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhh-------
Q psy8684          93 -EPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKE-------  163 (226)
Q Consensus        93 -~~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~-------  163 (226)
                       ++++++.+|++++++++.+| +||++++|+||||.+++|+||.+||.|++.+++++|+|+|+.+++++||+.       
T Consensus        81 ~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~  160 (222)
T 1ryp_M           81 DKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY  160 (222)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence             99999999999999998765 599999999999976679999999999999999999999999999999998       


Q ss_pred             ----------hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684         164 ----------WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF  211 (226)
Q Consensus       164 ----------~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l  211 (226)
                                |+++||++||++++++||..+.++|..++++++|++|+++| +..+.+
T Consensus       161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~~~~  217 (222)
T 1ryp_M          161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG-VRKEFY  217 (222)
T ss_dssp             CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEE
T ss_pred             ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCC-eEEEEe
Confidence                      88999999999999999999999999999999999999999 766554

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=100.00  E-value=6.5e-47  Score=318.95  Aligned_cols=203  Identities=18%  Similarity=0.221  Sum_probs=194.2

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc-
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR-   89 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-   89 (226)
                      .+++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++||+|++||..+|++.|.++++.+++.|+    + 
T Consensus        35 ~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~----~~  110 (266)
T 1g0u_M           35 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENA----YD  110 (266)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHH----TT
T ss_pred             ccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhh----hc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999    8 


Q ss_pred             ----ccCCCCCHHHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          90 ----EMNEPPLVYRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        90 ----~~~~~~~~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                          +++++++++.++++++++++.++   +||++++|+||||.+++|+||.+||.|++.+++++|+|+|+.+++++||+
T Consensus       111 ~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~  190 (266)
T 1g0u_M          111 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRK  190 (266)
T ss_dssp             CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTT
T ss_pred             cchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHH
Confidence                89999999999999999998765   69999999999998569999999999999999999999999999999999


Q ss_pred             hhcC-----CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CCeEEEEeChhhHhhH-h
Q psy8684         163 EWRA-----NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENG-KPMEKLVFTQEEVQHF-F  220 (226)
Q Consensus       163 ~~~~-----~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~-g~~~~~~l~~~ei~~~-~  220 (226)
                      .|++     +||++||++++++||..+.++|..++++++|++|+++ |   ++.++++||+++ |
T Consensus       191 ~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g---~~~~~~~ei~~~~w  252 (266)
T 1g0u_M          191 VVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG---LTFKKNLQVENMKW  252 (266)
T ss_dssp             TCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE---EEEEEEEECCCCCC
T ss_pred             hhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC---eEEcCHHHhhhhhh
Confidence            9999     9999999999999999999999999999999999999 7   457899999998 6

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=100.00  E-value=5.3e-47  Score=317.59  Aligned_cols=206  Identities=11%  Similarity=0.113  Sum_probs=193.6

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+++.++ .++.+||++|++||+|++||..+|++.+.++++.+++.|+    ++
T Consensus        27 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~  101 (254)
T 1iru_G           27 MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFR----SN  101 (254)
T ss_dssp             HHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHH----HH
Confidence            689999999999999999999999999998777 4789999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~  165 (226)
                      ++++++++.+++++++++|.++     +||++++|+||||+.++|+||.+||.|++.+++++|+|+|+++++++|++.|+
T Consensus       102 ~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~  181 (254)
T 1iru_G          102 FGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM  181 (254)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCG
T ss_pred             hCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhcc
Confidence            9999999999999999999885     59999999999995589999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC--CCeEEEEeChhhHhhHhhcc
Q psy8684         166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENG--KPMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~--g~~~~~~l~~~ei~~~~~~~  223 (226)
                      ++||++||+++++++|..+.++|..++.+++|++|+++  |  .++.++++||++++...
T Consensus       182 ~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g--~~~~l~~~~i~~~~~~~  239 (254)
T 1iru_G          182 KEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNG--RHEIVPKDIREEAEKYA  239 (254)
T ss_dssp             GGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTT--CCEECCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCC--CeEECCHHHHHHHHHHH
Confidence            99999999999999999998888767889999999987  4  25689999999998753

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=100.00  E-value=6e-47  Score=316.27  Aligned_cols=205  Identities=15%  Similarity=0.268  Sum_probs=193.1

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+++ ++..++.+||++|++||++++||..+|++.+.++++.+++.|+    ++
T Consensus        23 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~   97 (248)
T 1iru_D           23 QEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHR----LT   97 (248)
T ss_dssp             HHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHH----HH
Confidence            678999999999999999999999999997 6777899999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~  165 (226)
                      ++++++++.+++++++++|.++     |||++++|+||||++++|+||.+||.|++.+++++|+|+|++.++++|++.|+
T Consensus        98 ~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~  177 (248)
T 1iru_D           98 VEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT  177 (248)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCC
T ss_pred             HCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhc
Confidence            9999999999999999998874     59999999999995579999999999999999999999999999999999999


Q ss_pred             CCC--CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684         166 ANM--KKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       166 ~~~--s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      ++|  |++||++++++||..+.+   .++++++|++|+++| . ++.++++||++++..+++
T Consensus       178 ~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g-~-~~~l~~~ei~~~~~~~~~  234 (248)
T 1iru_D          178 DEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQ-S-LKILNPEEIEKYVAEIEK  234 (248)
T ss_dssp             SSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSS-C-EECCCHHHHHHHTTTTTT
T ss_pred             ccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCC-c-EEECCHHHHHHHHHHHHh
Confidence            999  999999999999999986   368999999999998 3 678999999999988753

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=100.00  E-value=2.3e-46  Score=313.13  Aligned_cols=207  Identities=18%  Similarity=0.300  Sum_probs=191.7

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHh-hhhcccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDL-DVAYGYR   89 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~   89 (226)
                      .+|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||+|++||..+|++.+.++++.+++. |+    .
T Consensus        25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~----~   99 (250)
T 1ryp_B           25 LTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYK----R   99 (250)
T ss_dssp             HHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTH----H
T ss_pred             HHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHH----H
Confidence            6889999999999999999999999998 5888889999999999999999999999999999999999998 88    8


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhh
Q psy8684          90 EMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEW  164 (226)
Q Consensus        90 ~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~  164 (226)
                      .++.+++++.+++.++++++.++     +||++++|+||||++++|+||.+||.|++.+++++|+|+|+++++++||+.|
T Consensus       100 ~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~  179 (250)
T 1ryp_B          100 IYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW  179 (250)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC
T ss_pred             HhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHh
Confidence            88999999998888888887653     5999999999999867899999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-------------CeEEEEeChhhHhhHhhcc
Q psy8684         165 RANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK-------------PMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       165 ~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g-------------~~~~~~l~~~ei~~~~~~~  223 (226)
                      +++||++||++++++||..+.+++. ++++++|++|++++             +..++.|+++||++++..+
T Consensus       180 ~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~l~~~  250 (250)
T 1ryp_B          180 NDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL  250 (250)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHTTC
T ss_pred             ccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccccccccccccccCCCCCeEECCHHHHHHHHHhC
Confidence            9999999999999999999998865 78999999999862             1347899999999999764

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=100.00  E-value=5.2e-46  Score=310.27  Aligned_cols=204  Identities=20%  Similarity=0.303  Sum_probs=191.0

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|||+|||+++||||||+|+|.+.+ ++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    ++
T Consensus        28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~  102 (246)
T 1j2p_A           28 REAVKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINR----LT  102 (246)
T ss_dssp             HHHHHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHH----HH
Confidence            578999999999999999999999999986 5568899999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~  165 (226)
                      ++++++++.+++.+++++|.|+     |||++++|+||||  ++|+||.+||.|++.+++++|+|+|+++++++|++.|+
T Consensus       103 ~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~  180 (246)
T 1j2p_A          103 YDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR  180 (246)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred             hCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhc
Confidence            9999999999999999998774     4999999999999  68999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc-CCCCeEEEEeChhhHhhHhhccC
Q psy8684         166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLE-NGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~-~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      ++||++||++++++||..+.++ ..++++++|++|+ ++++  ++.++++||++++.+++
T Consensus       181 ~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~--~~~l~~~ei~~~~~~~~  237 (246)
T 1j2p_A          181 DDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRT--FKEVSPEELKPYVERAN  237 (246)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCC--CEECCHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCc--eEECCHHHHHHHHHHHH
Confidence            9999999999999999999998 7788999999999 6542  56899999999988763

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=100.00  E-value=2.6e-45  Score=298.10  Aligned_cols=194  Identities=19%  Similarity=0.314  Sum_probs=182.7

Q ss_pred             ccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684          14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE   93 (226)
Q Consensus        14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   93 (226)
                      ..+|+|+|||+++||||||+|+|.+++.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+    +++++
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~   80 (205)
T 1iru_J            5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYE----LKEGR   80 (205)
T ss_dssp             TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHH----HHSSS
T ss_pred             cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHH----hhcCC
Confidence            46899999999999999999999999988888899999999999999999999999999999999999999    99999


Q ss_pred             CCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeC-CCCeEEEEECCCCcee-eeeeEEecCChHHHHHHHhhhhcCCCCH
Q psy8684          94 PPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDT-VKGGQVYALPASGVLT-RQNCAVGGSGSSYILGYVDKEWRANMKK  170 (226)
Q Consensus        94 ~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~-~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~~~Le~~~~~~~s~  170 (226)
                      +++++.++++++++++.++ .||++++|+||||+ +++|+||.+||.|++. +.+|+|+|+|+++++++||+.|+++||+
T Consensus        81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~  160 (205)
T 1iru_J           81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP  160 (205)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence            9999999999999997665 49999999999995 4789999999999985 4577999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeC
Q psy8684         171 QECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT  212 (226)
Q Consensus       171 ~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~  212 (226)
                      +||++++++||..+.++|..+++++++++|+++| +.++.++
T Consensus       161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~~  201 (205)
T 1iru_J          161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK-ITTRTLK  201 (205)
T ss_dssp             HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB-EEEEEBC
T ss_pred             HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC-EEEEEee
Confidence            9999999999999999999999999999999999 8777664

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=100.00  E-value=2.7e-46  Score=314.76  Aligned_cols=204  Identities=14%  Similarity=0.193  Sum_probs=191.8

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+++.   .++.+||++|++||+|++||..+|++.+.++++.+++.|+    ++
T Consensus        26 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~   98 (263)
T 1iru_F           26 MEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSR----FV   98 (263)
T ss_dssp             HHHHHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHH----HH
Confidence            5789999999999999999999999999974   2478999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684          91 MNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~  165 (226)
                      ++++++++.+++++++++|.+     .|||++++|+||||+ .||+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus        99 ~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~  177 (263)
T 1iru_F           99 FDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMS  177 (263)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhc
Confidence            999999999999999999865     369999999999998 78999999999999999999999999999999999999


Q ss_pred             C--CCCHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         166 A--NMKKQECIDFIKMGLSLAMARD-YASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       166 ~--~~s~~eai~la~~~l~~~~~~d-~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +  +||++||++++++||..+.++| ..++++++|++|++++ . ++.++++||+.++..++
T Consensus       178 ~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~-~-~~~l~~~ei~~~~~~~~  237 (263)
T 1iru_F          178 EFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL-E-FTIYDDDDVSPFLEGLE  237 (263)
T ss_dssp             HHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE-E-EEEECSGGGHHHHTTCC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC-C-eEECCHHHHHHHHHHHh
Confidence            8  9999999999999999999999 4788999999999985 2 67899999999998875

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=100.00  E-value=3.4e-46  Score=309.04  Aligned_cols=199  Identities=17%  Similarity=0.239  Sum_probs=186.8

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+.+..   ++.+||++|++||++++||..+|++.+.++++.+++.|+    ++
T Consensus        25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~   97 (233)
T 1ryp_F           25 LEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSS----LV   97 (233)
T ss_dssp             HHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHH----HH
Confidence            68899999999999999999999999998742   478999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684          91 MNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~  165 (226)
                      ++++++++.+++.+++++|.|     .|||++++|+||||+ .||+||.+||+|++.+++++|+|+|++.++++||+.|+
T Consensus        98 ~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~  176 (233)
T 1ryp_F           98 FNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD  176 (233)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhc
Confidence            999999999999999999764     469999999999998 78999999999999999999999999999999999999


Q ss_pred             C--CC--CHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684         166 A--NM--KKQECIDFIKMGLSLAMARD-YASGGLINIGVLENGKPMEKLVFTQEEVQHFF  220 (226)
Q Consensus       166 ~--~~--s~~eai~la~~~l~~~~~~d-~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~  220 (226)
                      +  +|  |++||+++++++|..+. +| ..++++++|++|++++ . ++.++++||++++
T Consensus       177 ~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~-~-~~~l~~~ei~~~l  233 (233)
T 1ryp_F          177 TFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDT-P-FTIYDGEAVAKYI  233 (233)
T ss_dssp             HHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTE-E-EEEEEGGGGGGGC
T ss_pred             cccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCC-C-EEECCHHHHHhhC
Confidence            8  99  99999999999999999 77 5689999999999996 3 6789999999875

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=100.00  E-value=2.7e-45  Score=296.46  Aligned_cols=190  Identities=14%  Similarity=0.234  Sum_probs=180.4

Q ss_pred             CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      .||+|||+++||||||+|+|.+++.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    ++++++++
T Consensus         1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~   76 (198)
T 1ryp_K            1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYS----IREDYELS   76 (198)
T ss_dssp             CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHHTSCCC
T ss_pred             CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHH----HhcCCCCC
Confidence            37999999999999999999999988888999999999999999999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHHHhcc---CCceeEEEEEEEeC-CCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHH
Q psy8684          97 VYRAANLFQKIFRSNE---GSFKAAIIIAGWDT-VKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQE  172 (226)
Q Consensus        97 ~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~-~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~e  172 (226)
                      ++.+++++++++|.++   +||++++|+||||+ +++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++|
T Consensus        77 v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee  156 (198)
T 1ryp_K           77 PQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEE  156 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHH
Confidence            9999999999999874   49999999999996 5799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeCh
Q psy8684         173 CIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQ  213 (226)
Q Consensus       173 ai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~  213 (226)
                      |++++++||..+.++|..+++++++++|+++| ++  .+++
T Consensus       157 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~--~~~~  194 (198)
T 1ryp_K          157 GLDLLKLCVQELEKRMPMDFKGVIVKIVDKDG-IR--QVDD  194 (198)
T ss_dssp             HHHHHHHHHHHHHHHCSBCCCCEEEEEEETTE-EE--EECC
T ss_pred             HHHHHHHHHHHHHHhCccCCCceEEEEEcCCC-EE--Eecc
Confidence            99999999999999999999999999999998 53  4554

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=100.00  E-value=1.1e-44  Score=294.33  Aligned_cols=194  Identities=15%  Similarity=0.229  Sum_probs=182.3

Q ss_pred             cccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684          13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN   92 (226)
Q Consensus        13 ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   92 (226)
                      -..+|+|+|||+++||||||+|+|.+++.++.+++.+||++|+ |++++++|..+|++.+.++++.+++.|+    ++++
T Consensus         4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~   78 (204)
T 1ryp_J            4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYK----LKEE   78 (204)
T ss_dssp             GGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHS
T ss_pred             cCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHh----hccC
Confidence            4679999999999999999999999999888888999999999 9999999999999999999999999999    9999


Q ss_pred             CCCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeC-CCCeEEEEECCCCcee-eeeeEEecCChHHHHHHHhhhhcCCCC
Q psy8684          93 EPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDT-VKGGQVYALPASGVLT-RQNCAVGGSGSSYILGYVDKEWRANMK  169 (226)
Q Consensus        93 ~~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~-~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~~~Le~~~~~~~s  169 (226)
                      ++++++.++++++++++.++ .||++++|+||||+ +++|+||.+||.|++. +.+|+|+|+|+++++++||+.|+++||
T Consensus        79 ~~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s  158 (204)
T 1ryp_J           79 RAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLE  158 (204)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCC
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcC
Confidence            99999999999999997665 49999999999996 5789999999999985 457899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeC
Q psy8684         170 KQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT  212 (226)
Q Consensus       170 ~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~  212 (226)
                      ++||++++++||..+.++|..++++++|++|+++| +.++.++
T Consensus       159 ~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~~  200 (204)
T 1ryp_J          159 PEDLFETISQALLNAADRDALSGWGAVVYIIKKDE-VVKRYLK  200 (204)
T ss_dssp             HHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC-EEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC-EEEEEee
Confidence            99999999999999999999899999999999999 8776654

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=100.00  E-value=6.9e-45  Score=301.56  Aligned_cols=200  Identities=19%  Similarity=0.256  Sum_probs=188.2

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|+++++|++||..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v   76 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYE----KIEGVPLTF   76 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred             CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhH----HHhCCCCCH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCceeEEEEEEEeCCCC-----eEEEEECCCCceeee--eeEEecCChHHHHHHHhhhhcC
Q psy8684          98 YRAANLFQKIFRSN----EGSFKAAIIIAGWDTVKG-----GQVYALPASGVLTRQ--NCAVGGSGSSYILGYVDKEWRA  166 (226)
Q Consensus        98 ~~~a~~l~~~~~~~----~~p~~v~~liaG~d~~~~-----p~ly~id~~G~~~~~--~~~a~Gsg~~~~~~~Le~~~~~  166 (226)
                      +.+++.+++++|.+    .+||++++|+||||++++     |+||.+||+|++.++  +++|+|+|+++++++|++.|++
T Consensus        77 ~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~  156 (235)
T 1q5q_H           77 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP  156 (235)
T ss_dssp             HHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCC
Confidence            99999999999975    469999999999998657     999999999999988  9999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         167 NMKKQECIDFIKMGLSLAMARDYASGGL--I-----NIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       167 ~~s~~eai~la~~~l~~~~~~d~~~~~~--i-----~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +||++||++++++||..+.++|..++++  +     +|++|+++|   ++.++++||++++..+.
T Consensus       157 ~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g---~~~l~~~ei~~~~~~~~  218 (235)
T 1q5q_H          157 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG---AVHVSEETTSELARRIV  218 (235)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE---EEECCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC---eEEeCHHHHHHHHHHHH
Confidence            9999999999999999999999987753  2     999999988   45799999999998763

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=100.00  E-value=1.8e-45  Score=306.75  Aligned_cols=203  Identities=12%  Similarity=0.188  Sum_probs=180.5

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|+++|+|+|||+++||||||+|+|        +++.+||++|++||+|+++|+.+|++.|.+.++.+++.|+  
T Consensus        18 EYA-~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~--   86 (248)
T 3mi0_A           18 ELA-RKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRG--   86 (248)
T ss_dssp             HHH-HHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHH-HHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHH--
Confidence            566 89999999999999999999999998        3578999999999999999999999999999999999999  


Q ss_pred             cccccC-CCCCHHHHHHHHH-HHHHhc---cCCceeEEEEEEEeC---CCCeEEEEECCCCcee-eeeeEEecCChHHHH
Q psy8684          87 GYREMN-EPPLVYRAANLFQ-KIFRSN---EGSFKAAIIIAGWDT---VKGGQVYALPASGVLT-RQNCAVGGSGSSYIL  157 (226)
Q Consensus        87 ~~~~~~-~~~~~~~~a~~l~-~~~~~~---~~p~~v~~liaG~d~---~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~  157 (226)
                        ++++ .+++++.++++++ .+.|.|   .+||+|++|+||||+   .+||+||++||+|++. +++++|+|+|++.++
T Consensus        87 --~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~  164 (248)
T 3mi0_A           87 --YAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIA  164 (248)
T ss_dssp             --HHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHH
T ss_pred             --HhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHH
Confidence              8999 8999999999999 554444   579999999999997   4789999999999999 599999999999999


Q ss_pred             HHHhhhhcCCCCHHHHHHHHHHHHHHHH-------hcccCCCCcEEEEEEcCCC-CeEEEEeChhhHhhHhhcc
Q psy8684         158 GYVDKEWRANMKKQECIDFIKMGLSLAM-------ARDYASGGLINIGVLENGK-PMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       158 ~~Le~~~~~~~s~~eai~la~~~l~~~~-------~~d~~~~~~i~i~vi~~~g-~~~~~~l~~~ei~~~~~~~  223 (226)
                      ++||+.|+++|+++||++++++||..+.       +++ .++.+++|++|+++| ...++.|+++||++++.++
T Consensus       165 ~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~  237 (248)
T 3mi0_A          165 NALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRRAFRRITGSALQALLVDQ  237 (248)
T ss_dssp             HHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC---
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHc
Confidence            9999999999999999999999999998       554 467999999999996 2457899999999998875

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=100.00  E-value=2.1e-45  Score=306.18  Aligned_cols=203  Identities=17%  Similarity=0.182  Sum_probs=187.6

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+++.++.+ ..+||++|++||++++||..+|++.+.++++.+++.|+    ++
T Consensus        24 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~   98 (244)
T 1ryp_G           24 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK----KL   98 (244)
T ss_dssp             HHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHH----HH
Confidence            68999999999999999999999999999877654 45999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhh--
Q psy8684          91 MNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKE--  163 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~--  163 (226)
                      ++++++++.+++++++++|.+     .+||++++|+||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.  
T Consensus        99 ~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~  177 (244)
T 1ryp_G           99 YKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVD  177 (244)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHH
T ss_pred             hCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHh
Confidence            999999999999999999876     369999999999997 789999999999999999999999999999999997  


Q ss_pred             -hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC---CCCeEEEEeChhhHhhHhhc
Q psy8684         164 -WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLEN---GKPMEKLVFTQEEVQHFFNH  222 (226)
Q Consensus       164 -~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~---~g~~~~~~l~~~ei~~~~~~  222 (226)
                       |+++||++||++++++||..+.++|..++++++|.+|++   +| +  +.+.++|+-+....
T Consensus       178 ~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g-~--~~~~~~~~~~~~~~  237 (244)
T 1ryp_G          178 HHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-L--HKFVKGDLLQEAID  237 (244)
T ss_dssp             HCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT-S--EEECCTHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC-e--eeeChHHHHHHHHH
Confidence             999999999999999999999999998899999999998   67 4  35677776555443

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=100.00  E-value=3.5e-45  Score=311.40  Aligned_cols=208  Identities=20%  Similarity=0.262  Sum_probs=172.2

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      ++ .+ +.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+   
T Consensus        50 ya-~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~---  124 (291)
T 2jay_A           50 GD-AQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYE---  124 (291)
T ss_dssp             ----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHH---
T ss_pred             cc-cc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhh---
Confidence            44 55 88999999999999999999999999989999999999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc----CCceeEEEEEEEeCCCC-----eEEEEECCCCcee--eeeeEEecCChHHH
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE----GSFKAAIIIAGWDTVKG-----GQVYALPASGVLT--RQNCAVGGSGSSYI  156 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~----~p~~v~~liaG~d~~~~-----p~ly~id~~G~~~--~~~~~a~Gsg~~~~  156 (226)
                       +.++.+++++.+++.+++++|.++    +||++++|+||||.+++     |+||.+||+|++.  +++++|+|+|++++
T Consensus       125 -~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a  203 (291)
T 2jay_A          125 -KLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFA  203 (291)
T ss_dssp             -HHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHH
T ss_pred             -hhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHH
Confidence             899999999999999999999875    48999999999998556     9999999999988  89999999999999


Q ss_pred             HHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         157 LGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL--I-----NIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       157 ~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~--i-----~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +++|++.|+++|+++||++++++||..+.++|..+++.  +     +|++|+++|   ++.++++||++++..+.
T Consensus       204 ~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg---~~~l~~~ei~~~~~~~~  275 (291)
T 2jay_A          204 KSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG---AVDVPESRIAELARAII  275 (291)
T ss_dssp             HHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE---EEECCHHHHHHHHHHC-
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC---eEEcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987654  2     699999998   45799999999998775

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=100.00  E-value=1.1e-44  Score=297.87  Aligned_cols=194  Identities=28%  Similarity=0.487  Sum_probs=182.8

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v   76 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHS----LYTSREPRV   76 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHTSCCCH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHH----HHcCCCCCH
Confidence            6899999999999999999999998999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI  177 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la  177 (226)
                      +.++++++++++.+++||++++|+||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++
T Consensus        77 ~~~a~~l~~~l~~~~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la  155 (222)
T 1ryp_I           77 VSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA  155 (222)
T ss_dssp             HHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence            99999999999999999999999999998 78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhh
Q psy8684         178 KMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQH  218 (226)
Q Consensus       178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~  218 (226)
                      ++||..+.++|..++++++|++|+++|++  +.+.+.++..
T Consensus       156 ~~al~~~~~~d~~sg~~i~v~vi~~~g~~--~~~~~~~~~~  194 (222)
T 1ryp_I          156 SDAIQAGIWNDLGSGSNVDVCVMEIGKDA--EYLRNYLTPN  194 (222)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEEETTSCE--EEEEEEECCC
T ss_pred             HHHHHHHHhccccCCCcEEEEEEECCCCE--EEEeceecCC
Confidence            99999999999989999999999998833  3344444433

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=100.00  E-value=8.4e-45  Score=300.80  Aligned_cols=195  Identities=28%  Similarity=0.487  Sum_probs=184.4

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+    +++++++++
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v   76 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHS----LSTGRLPRV   76 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHHCSCCCH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHH----HhcCCCCCH
Confidence            6899999999999999999999988888999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI  177 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la  177 (226)
                      +.+++++++.++.+++||++++|+||||+ .||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++
T Consensus        77 ~~la~~l~~~l~~~~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la  155 (234)
T 1iru_I           77 VTANRMLKQMLFRYRGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV  155 (234)
T ss_dssp             HHHHHHHHHHHHHTTTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred             HHHHHHHHHHHHhcCCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHH
Confidence            99999999999999999999999999998 78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684         178 KMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF  220 (226)
Q Consensus       178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~  220 (226)
                      ++||..+.++|..+++++++++|+++| +  +.+.+.++..-|
T Consensus       156 ~~al~~a~~~d~~sg~~i~v~vi~k~g-~--~~~~~~~~~~~~  195 (234)
T 1iru_I          156 SEAIAAGIFNDLGSGSNIDLCVISKNK-L--DFLRPYTVPNKK  195 (234)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEEETTE-E--ECCSEEECCCCC
T ss_pred             HHHHHHHHHhcccCCCCEEEEEEECCc-E--EEEcceecCccc
Confidence            999999999999899999999999998 5  355655554444

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=100.00  E-value=3e-45  Score=311.19  Aligned_cols=202  Identities=17%  Similarity=0.176  Sum_probs=186.6

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      .+|+++|+|+|||+++||||||+|+|.+++.++. +..+||++|++||+|++||+.+|++.|+++++.+++.|+    ++
T Consensus        28 ~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~----~~  102 (288)
T 3nzj_F           28 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK----KL  102 (288)
T ss_dssp             HHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHH----HH
Confidence            7899999999999999999999999999987665 477999999999999999999999999999999999999    99


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhh--
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKE--  163 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~--  163 (226)
                      ++++++++.+|+++++++|.|+     +||++++||||||. .||+||.+||+|++.+++++|+|+|++.++++|++.  
T Consensus       103 ~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~  181 (288)
T 3nzj_F          103 YKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVD  181 (288)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhcc
Confidence            9999999999999999999874     59999999999998 789999999999999999999999999999999999  


Q ss_pred             -hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC-CCCeEEEEeChhhHhh
Q psy8684         164 -WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLEN-GKPMEKLVFTQEEVQH  218 (226)
Q Consensus       164 -~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~-~g~~~~~~l~~~ei~~  218 (226)
                       |+++||++||++++++||..+.+++..++..++|.+|++ +.+..++.++.+++++
T Consensus       182 ~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~  238 (288)
T 3nzj_F          182 HHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQE  238 (288)
T ss_dssp             HCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHH
Confidence             999999999999999999999999988888999999999 3224455666666654

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=100.00  E-value=2.9e-44  Score=291.09  Aligned_cols=186  Identities=15%  Similarity=0.246  Sum_probs=176.4

Q ss_pred             CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      .||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+    ++++++++
T Consensus         1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~   76 (201)
T 1iru_K            1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYK----MRNGYELS   76 (201)
T ss_dssp             CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHH----HHHSSCCC
T ss_pred             CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHH----HHcCCCCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHH-Hh--ccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHH
Q psy8684          97 VYRAANLFQKIF-RS--NEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC  173 (226)
Q Consensus        97 ~~~~a~~l~~~~-~~--~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~ea  173 (226)
                      ++.+++++++.+ +.  .++||++++|+||||++++|+||.+||.|++.+++++|+|+|+++++++||+.|+++||++||
T Consensus        77 v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea  156 (201)
T 1iru_K           77 PTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERA  156 (201)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHH
Confidence            999999998765 33  236999999999999867899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684         174 IDFIKMGLSLAMARDYASGGLINIGVLENGKPME  207 (226)
Q Consensus       174 i~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~  207 (226)
                      ++++++||..+.++|..+++++++++|+++| +.
T Consensus       157 ~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g-~~  189 (201)
T 1iru_K          157 VELLRKCLEELQKRFILNLPTFSVRIIDKNG-IH  189 (201)
T ss_dssp             HHHHHHHHHHHHHTBCBCCCCEEEEEEETTE-EE
T ss_pred             HHHHHHHHHHHHhhccccCCceEEEEEcCCC-eE
Confidence            9999999999999999999999999999999 64

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=100.00  E-value=2.6e-44  Score=301.93  Aligned_cols=204  Identities=14%  Similarity=0.219  Sum_probs=181.6

Q ss_pred             CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      +|+ .+|+++|+|+|||+++||||||+|+|        +++.+||++|++||+|++||..+|++.|.++++.+++.|+  
T Consensus        18 EYA-~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~--   86 (259)
T 1q5q_A           18 ELA-RKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRG--   86 (259)
T ss_dssp             HHH-HHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHH-HHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHH--
Confidence            355 78999999999999999999999998        3678999999999999999999999999999999999998  


Q ss_pred             cccccC-CCCCHHHHHHHHHH-HHHhc---cCCceeEEEEEEEe--C-CCCeEEEEECCCCcee-eeeeEEecCChHHHH
Q psy8684          87 GYREMN-EPPLVYRAANLFQK-IFRSN---EGSFKAAIIIAGWD--T-VKGGQVYALPASGVLT-RQNCAVGGSGSSYIL  157 (226)
Q Consensus        87 ~~~~~~-~~~~~~~~a~~l~~-~~~~~---~~p~~v~~liaG~d--~-~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~  157 (226)
                        +.++ ++++++.+++++++ +.|.|   .+||++++|+||||  + .++|+||.+||+|++. +++++|+|+|++.++
T Consensus        87 --~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~  164 (259)
T 1q5q_A           87 --YSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIA  164 (259)
T ss_dssp             --HHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHH
T ss_pred             --HHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHH
Confidence              7777 49999999999999 43333   46999999999999  3 4799999999999999 789999999999999


Q ss_pred             HHHhhhhcCCCCHHHHHHHHHHHHHHHH-----hcccCCCCcEEEEEEcCCC-CeEEEEeChhhHhhHhhccC
Q psy8684         158 GYVDKEWRANMKKQECIDFIKMGLSLAM-----ARDYASGGLINIGVLENGK-PMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       158 ~~Le~~~~~~~s~~eai~la~~~l~~~~-----~~d~~~~~~i~i~vi~~~g-~~~~~~l~~~ei~~~~~~~~  224 (226)
                      ++|++.|+++||++||++++++||..+.     ++|. ++++++|++|+++| ...++.++++||+.++..+.
T Consensus       165 ~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~  236 (259)
T 1q5q_A          165 TAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEP  236 (259)
T ss_dssp             HHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC-
T ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHHHHHHhh
Confidence            9999999999999999999999999998     8998 88999999999984 01267899999999998764

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=100.00  E-value=6.4e-36  Score=238.18  Aligned_cols=169  Identities=20%  Similarity=0.228  Sum_probs=150.4

Q ss_pred             cCCceEEEEEeCCeEEEEEeCCccCCce-eeecccCceEee-cCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684          15 TCGTTTIACEYENGVMMGADTRTTLGTY-VCNREAEKLTKI-SDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN   92 (226)
Q Consensus        15 ~~gttvigi~~~dgVvlaad~r~t~~~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   92 (226)
                      .+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|++++++|.++|++.|.++++.+++.|+       |
T Consensus         3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~-------g   75 (180)
T 2z3b_A            3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN-------G   75 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT-------T
T ss_pred             CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc-------C
Confidence            5799999999999999999999999888 999999999999 999999999999999999999999999886       3


Q ss_pred             CCCCHHHHHHHHHHHHHhc--cCCceeEEEEEEEeCCCCeEEEEECCCCceee--eeeEEecCChHHHHHHHhhhhcC--
Q psy8684          93 EPPLVYRAANLFQKIFRSN--EGSFKAAIIIAGWDTVKGGQVYALPASGVLTR--QNCAVGGSGSSYILGYVDKEWRA--  166 (226)
Q Consensus        93 ~~~~~~~~a~~l~~~~~~~--~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~--~~~~a~Gsg~~~~~~~Le~~~~~--  166 (226)
                        ..++.++ .+.+.++++  .|||++++|+|  |   +|+||.+||.|++.+  +++.|+|+|+++++++||+.|++  
T Consensus        76 --~~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~  147 (180)
T 2z3b_A           76 --NLKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAG  147 (180)
T ss_dssp             --CHHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHG
T ss_pred             --ChHHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccC
Confidence              3333333 345555443  46999999999  3   599999999999987  59999999999999999999998  


Q ss_pred             -CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q psy8684         167 -NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLE  201 (226)
Q Consensus       167 -~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~  201 (226)
                       +||.+|   ++.+||..+.++|..+++++++.+|+
T Consensus       148 ~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i~  180 (180)
T 2z3b_A          148 ESMSASE---IARAALETAGEICVYTNDQIILEELE  180 (180)
T ss_dssp             GGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             CCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence             999999   47799999999999999999999883

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=100.00  E-value=1.9e-35  Score=234.24  Aligned_cols=167  Identities=17%  Similarity=0.261  Sum_probs=149.6

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEee-cCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKI-SDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++| ++|+++++||..+|++.|.++++.+++.|+    .      +
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~------~   70 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQ----G------H   70 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTT----T------C
T ss_pred             CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhc----C------c
Confidence            6899999999999999999999889999999999999 999999999999999999999999999998    4      3


Q ss_pred             HHHHHHHHHHHHHhcc--CCceeEEEEEEEeCCCCeEEEEECCCCceeeee---eEEecCChHHHHHHHhhhhc-CCCCH
Q psy8684          97 VYRAANLFQKIFRSNE--GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQN---CAVGGSGSSYILGYVDKEWR-ANMKK  170 (226)
Q Consensus        97 ~~~~a~~l~~~~~~~~--~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~---~~a~Gsg~~~~~~~Le~~~~-~~~s~  170 (226)
                      +...+..+++.++.++  +|  ++.+++|+|   +|+||.+||+|++.+++   +.|+|+|+++++++||+.|+ ++||.
T Consensus        71 ~~~~~~~l~~~~~~~~~~r~--~~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~  145 (174)
T 1g3k_A           71 LLKSAVELAKDWRTDRALRK--LEAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSA  145 (174)
T ss_dssp             HHHHHHHHHHHHHHSTTGGG--CCCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCH
T ss_pred             HHHHHHHHHHHHHhccCcCc--ceEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCH
Confidence            4555566666666553  35  467888887   69999999999999988   99999999999999999999 99995


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC
Q psy8684         171 QECIDFIKMGLSLAMARDYASGGLINIGVLEN  202 (226)
Q Consensus       171 ~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~  202 (226)
                      +   +++++||..+.++|..++++++|.+|+.
T Consensus       146 ~---~l~~~al~~a~~rd~~sg~~i~v~~i~~  174 (174)
T 1g3k_A          146 H---EIVEKSLRIAGDICVFTNTNFTIEELPN  174 (174)
T ss_dssp             H---HHHHHHHHHHHHHCTTCCSCCEEEEEC-
T ss_pred             H---HHHHHHHHHHHHhccccCCceEEEEecC
Confidence            4   7999999999999999999999999963

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=100.00  E-value=2.8e-35  Score=232.59  Aligned_cols=165  Identities=20%  Similarity=0.307  Sum_probs=149.3

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEee-cCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKI-SDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++| ++|+++++||..+|++.+.++++.+++.|+    .+     .
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~-----~   71 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWG----GN-----L   71 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTT----TC-----H
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhc----cc-----H
Confidence            6899999999999999999999999999999999999 999999999999999999999999999988    54     3


Q ss_pred             HHHHHHHHHHHHHhcc--CCceeEEEEEEEeCCCCeEEEEECCCCceeeee--eEEecCChHHHHHHHhhhhc-CCCCHH
Q psy8684          97 VYRAANLFQKIFRSNE--GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQN--CAVGGSGSSYILGYVDKEWR-ANMKKQ  171 (226)
Q Consensus        97 ~~~~a~~l~~~~~~~~--~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~--~~a~Gsg~~~~~~~Le~~~~-~~~s~~  171 (226)
                      ++.++++.+ .+++++  +||++++|++  |   +|+||.+||.|++.+++  +.|+|+|+++++++||+.|+ ++||. 
T Consensus        72 ~~~~~~l~~-~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~-  144 (171)
T 1m4y_A           72 TKAAVELAK-DWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA-  144 (171)
T ss_dssp             HHHHHHHHH-HHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH-
T ss_pred             HHHHHHHHH-HHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH-
Confidence            666777655 444443  4799999998  4   79999999999999987  99999999999999999999 99996 


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         172 ECIDFIKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       172 eai~la~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                        ++++++||..+.++|..++++++|.++
T Consensus       145 --~~l~~~al~~a~~rd~~sg~~i~v~~~  171 (171)
T 1m4y_A          145 --REIVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             --HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             --HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence              678999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-43
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-42
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	8e-37
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	5e-35
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	8e-35
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	3e-33
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	5e-33
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-32
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	2e-32
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	3e-31
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	9e-31
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	1e-30
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	3e-30
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	6e-30
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	2e-29
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	3e-29
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	3e-29
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	8e-29
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	1e-28
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	1e-28
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	4e-28
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	1e-27
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	2e-27
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	3e-27
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	7e-27
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	1e-26
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	2e-26
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	2e-26
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	4e-26
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	1e-25
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-25
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	2e-23
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	4e-23
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	1e-22
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	2e-19
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	2e-19
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	2e-19

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  143 bits (362), Expect = 1e-43
 Identities = 97/203 (47%), Positives = 140/203 (68%), Gaps = 7/203 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +A +++ GV++GAD+RTT G+Y+ NR  +KLT I D I+CCRSG+AADTQA++D V+
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
           Y +         E+NEPPLV+ AA+LF+++         A IIIAGWD  +GGQVY++P 
Sbjct: 61  YQLGFH----SIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 116

Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G++ RQ+ A+GGSGSSYI GYVD  +R  M K+EC+ F    L+LAM RD +SGG+I +
Sbjct: 117 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 176

Query: 198 GVL-ENGKPMEKLVFTQEEVQHF 219
             + E+G  +E+ V   +++  F
Sbjct: 177 AAIAESG--VERQVLLGDQIPKF 197

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  141 bits (355), Expect = 2e-42
 Identities = 89/206 (43%), Positives = 136/206 (66%), Gaps = 8/206 (3%)

Query: 13  EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
           EV+ G + +A  +++GV++GAD+RTT G Y+ NR  +KLT++ D I+CCRSG+AADTQAI
Sbjct: 5   EVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAI 64

Query: 73  SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +D+V YH++L     Y      P    AA++F+++   N+ +  A II+AG+D    G+V
Sbjct: 65  ADIVQYHLEL-----YTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 119

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y +P  G + +   A+ GSGS++I GY DK +R NM K+E +DFIK  LS A+  D +SG
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179

Query: 193 GLINIGVL-ENGKPMEKLVFTQEEVQ 217
           G+I + VL   G  +E+L+F  +E +
Sbjct: 180 GVIRMVVLTAAG--VERLIFYPDEYE 203

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  126 bits (318), Expect = 8e-37
 Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 5/192 (2%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +  ++ NGV++ ADTR+T G  V ++   KL +IS  I+C  +GTAADT+A++ L+ 
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
            +I+L         +  P V  A  + ++     +G   A +I+AG D   G  ++++ A
Sbjct: 61  SNIELH----SLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHA 115

Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G          GSGS   +  ++  W+ ++ K+E I      +   +  D  SG  +++
Sbjct: 116 HGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDV 175

Query: 198 GVLENGKPMEKL 209
            V+E GK  E L
Sbjct: 176 CVMEIGKDAEYL 187

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  121 bits (305), Expect = 5e-35
 Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 21/202 (10%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G T +    E+  ++  DTR      + +R   K+    DNI    +G AAD  A+    
Sbjct: 9   GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYAL 135
              +     Y +   ++   +  AA   Q +        +    IIAG D    G VY+ 
Sbjct: 69  KNSVKW---YHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSF 125

Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRA-----------------NMKKQECIDFIK 178
              G   R+ C  GG+ +S I+ ++D +                     +  +E I  ++
Sbjct: 126 DPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVR 185

Query: 179 MGLSLAMARDYASGGLINIGVL 200
              + A  R    G  + I ++
Sbjct: 186 DSFTSATERHIQVGDGLEILIV 207

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  121 bits (305), Expect = 8e-35
 Identities = 37/213 (17%), Positives = 72/213 (33%), Gaps = 11/213 (5%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  GT+ I+ +Y+NGV++ AD   + G+ +     E+L  + DN     SG  +D Q I 
Sbjct: 5   IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIE 64

Query: 74  DLVSYHIDLD-VAYGYREMNEPPLVYRAANLFQKIFRSNEGSFK---AAIIIAGWDTVKG 129
            L+   +  +       +  E             +             AII+AG  +   
Sbjct: 65  RLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGD 124

Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA-----NMKKQECIDFIKMGLSLA 184
             +  +   GV         G G+      + K             Q   + I   + + 
Sbjct: 125 QFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 184

Query: 185 MARDYASGGLINIGVLENGKPMEKLVFTQEEVQ 217
             RD  S    ++ +++    +        +V+
Sbjct: 185 YYRDARSSRNFSLAIIDKNTGLTFK--KNLQVE 215

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  117 bits (294), Expect = 3e-33
 Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 5/187 (2%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT     Y++G+++GADTR T G  V ++   K+  IS NIYCC +GTAADT   + L+S
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
            +++L            P V  A  + +++     G   AA+++ G D V G  +Y++  
Sbjct: 61  SNLELH----SLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVD-VTGPHLYSIYP 115

Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G   +      GSGS   +   + ++R +M+++E  + +   ++  +  D  SG  I++
Sbjct: 116 HGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 175

Query: 198 GVLENGK 204
            V+   K
Sbjct: 176 CVISKNK 182

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  116 bits (290), Expect = 5e-33
 Identities = 43/204 (21%), Positives = 90/204 (44%), Gaps = 7/204 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+    ++ V+M  + R T+  ++ ++  +KL +I        +G   D Q +   + 
Sbjct: 1   TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
             ++L   Y  +     P+   A  L   + +     +   +++ G D      V+++ A
Sbjct: 61  AELEL---YRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDA 115

Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
           +G       A  GSGS ++ G ++ ++   M   E +D +   +S A  RD ASGG+I++
Sbjct: 116 AGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDV 175

Query: 198 GVLENGKPMEKLVFTQEEVQHFFN 221
            V+       +L    ++++    
Sbjct: 176 AVITRKDGYVQL--PTDQIESRIR 197

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  115 bits (288), Expect = 1e-32
 Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 8/205 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+    ++GV+M  + R T+G ++ ++ A+K+ +I+D +    +G+  D Q ++ ++ 
Sbjct: 1   TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALP 136
              +             P V   A L   +  S     +   ++I G D+         P
Sbjct: 61  IEAN----LYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDP 116

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
             G +  ++    GSGS    G ++  +   +   E ++     +  AM RD ASG  I+
Sbjct: 117 IGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGID 176

Query: 197 IGVLENGKPMEKLVFTQEEVQHFFN 221
           +  +   +      ++ EEV+    
Sbjct: 177 VVKITEDEFY---QYSPEEVEQILA 198

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  115 bits (288), Expect = 2e-32
 Identities = 39/184 (21%), Positives = 84/184 (45%), Gaps = 5/184 (2%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+A  ++ G+++  D+R T G +V ++  +++ +I+  +    +G AAD Q     + 
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS-FKAAIIIAGWDTVKGGQVYALP 136
               L          E   V  A+ +   +    +G+      +I G+   +G  +Y + 
Sbjct: 61  SQCRLH----ELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVD 116

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
           + G   + +    GSG ++  G +D  ++ ++  ++ +   K  +  A  RD  SGG +N
Sbjct: 117 SDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVN 176

Query: 197 IGVL 200
           +  +
Sbjct: 177 LYHV 180

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  111 bits (279), Expect = 3e-31
 Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 4/183 (2%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TTT+A ++ +GV++ AD+R T G Y+ ++  +K+ +I+  +    +G AAD      L++
Sbjct: 1   TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
               +   Y  R      +   +  L   +++          +I GWD  +G  +Y + +
Sbjct: 61  RQCRI---YELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDS 116

Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
            G          GSGS Y  G +D+ +  +++ ++  D  +  +  A  RD  SGG +N+
Sbjct: 117 EGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNL 176

Query: 198 GVL 200
             +
Sbjct: 177 YHV 179

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score =  110 bits (277), Expect = 9e-31
 Identities = 35/224 (15%), Positives = 79/224 (35%), Gaps = 18/224 (8%)

Query: 10  AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
           A   +  G + +   + +GV+  A+  +T           K++++ D +     G   + 
Sbjct: 12  ARKGIARGRSVVVLTFRDGVLFVAENPSTAL--------HKVSELYDRLGFAAVGKYNEF 63

Query: 70  QAISDLVSYHIDL-DVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTV- 127
           + +      H D+   +Y  R++    L    A     IF      ++  I +A    V 
Sbjct: 64  ENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVG 123

Query: 128 --KGGQVYAL-PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
             K  Q+Y +     ++  Q+  V G  +  I   + + +RA++  +  +      L   
Sbjct: 124 SPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQG 183

Query: 185 MARDYASGGL----INIGVLENGKPMEKL-VFTQEEVQHFFNHE 223
            A +     +    + + VL+  +P           ++     E
Sbjct: 184 GAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAE 227

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  110 bits (275), Expect = 1e-30
 Identities = 35/199 (17%), Positives = 77/199 (38%), Gaps = 5/199 (2%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G   +A + +N V + AD R  +   +   + +K+  + D +Y   +G A D Q ++  +
Sbjct: 7   GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQ--VYA 134
            + ++    Y  +E  +       + +   ++    G +    +IAG D           
Sbjct: 67  KFRLN---LYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 123

Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
                 +   +  V G+ +  + G  +  W  NM      + I   +  A+ RD  SG  
Sbjct: 124 DLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMG 183

Query: 195 INIGVLENGKPMEKLVFTQ 213
           + + ++E  K   + +  +
Sbjct: 184 VIVHIIEKDKITTRTLKAR 202

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  110 bits (275), Expect = 3e-30
 Identities = 39/210 (18%), Positives = 83/210 (39%), Gaps = 5/210 (2%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +    T +     +GV++ A+ R           +EK+ K+++++ C  +G  +D   ++
Sbjct: 27  IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLT 86

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFR-SNEGSFKAAIIIAGWDTVKGGQV 132
           + +       +      +    LV    ++ Q   +   +  F  +++  GWD   G Q+
Sbjct: 87  NELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQL 146

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEW-RANMKKQECIDFIKMGLSLAMARDYAS 191
           Y    SG          G+ S+  +  + +++    M  +  +      L+  M     S
Sbjct: 147 YQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLS 206

Query: 192 GGLINIGVL--ENGKPMEKLVFTQEEVQHF 219
              + I  L  ENGK + + V  Q+EV+  
Sbjct: 207 AEKVEIATLTRENGKTVIR-VLKQKEVEQL 235

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (270), Expect = 6e-30
 Identities = 32/186 (17%), Positives = 73/186 (39%), Gaps = 6/186 (3%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
              +    ++ V++ +    T G  V     +K  ++S +     +G A DT   ++ + 
Sbjct: 2   DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKI--FRSNEGSFKAAIIIAGWDTVKGG-QVYA 134
            +I L   Y  RE  E      ++ + Q++     +   ++  ++I G+D  K   ++Y 
Sbjct: 62  ANIQL---YSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQ 118

Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
           +   G          G    Y    +D  +R +M  +E +D +K+ +     R       
Sbjct: 119 IDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKG 178

Query: 195 INIGVL 200
           + + ++
Sbjct: 179 VIVKIV 184

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (269), Expect = 2e-29
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 11/213 (5%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  G+T I  +   GV +  + R T    +     EK+ +I  +I C  SG  AD + + 
Sbjct: 24  IKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLI 82

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK------IFRSNEGSFKAAIIIAGWDTV 127
           D                M    +    +NL  +         +    F  A++  G D  
Sbjct: 83  DKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE- 141

Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMAR 187
           KG Q++ +  SG   + +    GS S      + + +  +M  +E I    + L   M  
Sbjct: 142 KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE 201

Query: 188 DYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220
              +   I +  ++ G+       T+EE++   
Sbjct: 202 KLNATN-IELATVQPGQNFHMF--TKEELEEVI 231

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (266), Expect = 3e-29
 Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 10/201 (4%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  GT+ +  ++E GV++ AD   + G+    R   ++ +++++     SG  AD Q + 
Sbjct: 5   MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLK 64

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFK---AAIIIAGWDTVKGG 130
            ++   +                     +   +   S           ++I G+      
Sbjct: 65  QVLGQMVID---EELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GES 120

Query: 131 QVYALPASGVLTRQNCAVGGSGSSYILGYVDKE--WRANMKKQECIDFIKMGLSLAMARD 188
            +  +   GV         G G+      + +    +  + + E  D ++  + +   RD
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180

Query: 189 YASGGLINIGVL-ENGKPMEK 208
             S        + E G  +E 
Sbjct: 181 ARSYNRFQTATVTEKGVEIEG 201

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score =  106 bits (266), Expect = 3e-29
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 11/213 (5%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +A  Y+ GV++  D R T G  + +R+ EK+    +      +GTA     +  L +
Sbjct: 1   TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGW-----DTVKGGQV 132
             ++         +       R A++ +    +         ++ G+     D  + G++
Sbjct: 61  VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRI 120

Query: 133 YALPASGVLT--RQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYA 190
            +    G     R      GSGS +    + K +  +  ++  +      L  A   D A
Sbjct: 121 VSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSA 180

Query: 191 SGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE 223
           +GG      +        +  TQ    H     
Sbjct: 181 TGGPDLTRGIY----PTAVTITQAGAVHVSEET 209

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 8e-29
 Identities = 39/210 (18%), Positives = 81/210 (38%), Gaps = 4/210 (1%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           ++   T I     +G+++ A+ + T      +   EKL K++D I    +G  AD + + 
Sbjct: 28  ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILI 87

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFR-SNEGSFKAAIIIAGWDTVKGGQV 132
           +    H    +     ++    LV R +++ Q   +      F  + I AG+D   G Q+
Sbjct: 88  NTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQL 147

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y    SG  T       G+ +S     +  +++ +MK  + I+     LS        + 
Sbjct: 148 YTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTY 207

Query: 193 GLINIGVLENGKPMEKLVF---TQEEVQHF 219
             +    +  G    ++       +E++  
Sbjct: 208 DRLEFATIRKGANDGEVYQKIFKPQEIKDI 237

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  105 bits (263), Expect = 1e-28
 Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 6/207 (2%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  G+T +  ++ NGV++ +D +      +     EK+  I D +    SG  AD + + 
Sbjct: 19  VKKGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLV 77

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK-IFRSNEGSFKAAIIIAGWDTVKGGQV 132
           D        +       +N   LV R A+  Q+         +  ++I AG D   G ++
Sbjct: 78  DFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRL 136

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           +    +G +        GSG   ++ ++++E++ N+ ++E +      L  ++       
Sbjct: 137 FDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELK 196

Query: 193 GLINIGVLENGKPMEKLVFTQEEVQHF 219
               I  +  G         QEEV+ F
Sbjct: 197 A-PEIASITVGNKYRIY--DQEEVKKF 220

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (263), Expect = 1e-28
 Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 11/215 (5%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  G+T I    + GV++G + R T    + +   EK+ +I  +I C  SG  AD +++ 
Sbjct: 23  IKLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMI 81

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK-------IFRSNEGSFKAAIIIAGWDT 126
           +           Y   ++N   L     +L  +         R     F  A++IAG D 
Sbjct: 82  EHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA 141

Query: 127 VKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMA 186
             G Q++    SG   R N    GSGS      +  EW +++  +E    +   L   M 
Sbjct: 142 DDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVME 201

Query: 187 RDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221
                     +  +      +      E+      
Sbjct: 202 EKLDENN-AQLSCITKQDGFKIY--DNEKTAELIK 233

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (260), Expect = 4e-28
 Identities = 38/208 (18%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  GT  +  + +N V++G + R+TL          K++KI  ++    SG  AD++ + 
Sbjct: 25  VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILI 84

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWD-TVKGGQ 131
           +                +    L    A + Q+  +S     F  + +IAG+D      +
Sbjct: 85  EKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 144

Query: 132 VYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAS 191
           +Y    SG+ +  +    G  S  +  +++K +          + +K+ +   +      
Sbjct: 145 LYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTG 204

Query: 192 GGLINIGVLENGKPMEKLVFTQEEVQHF 219
              I I V++    +  L  + EE+  +
Sbjct: 205 AKNIEITVVKPDSDIVAL--SSEEINQY 230

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (258), Expect = 1e-27
 Identities = 35/207 (16%), Positives = 80/207 (38%), Gaps = 5/207 (2%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  G+T +     + V++G + ++        R   K+  + DN+    +G  AD + + 
Sbjct: 25  VKKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMAFAGLTADARIVI 83

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQV 132
           +                +    +    A+L Q+  +SN    F  + +I G+D     ++
Sbjct: 84  NRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRL 143

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y    SG          G G+  +  +++K +     + +    IK+ +   +    + G
Sbjct: 144 YQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDD-LTIKLVIKALLEVVQSGG 202

Query: 193 GLINIGVLENGKPMEKLVFTQEEVQHF 219
             I + V+   + ++ L    EE++ +
Sbjct: 203 KNIELAVMRRDQSLKIL--NPEEIEKY 227

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  102 bits (254), Expect = 2e-27
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 12/203 (5%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G T +A   E+  ++ +DTR + G  +  R++ K  K++D      SG   D   ++ ++
Sbjct: 9   GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
              + +   Y +           AA L   ++      +    II G D    G VY+  
Sbjct: 69  EARLKM---YKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD 125

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWR---------ANMKKQECIDFIKMGLSLAMAR 187
             G   R +   GGS S+ +   +D +             +     +  +K     A  R
Sbjct: 126 PVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAER 185

Query: 188 DYASGGLINIGVLENGKPMEKLV 210
           D  +G  + I ++      E+ V
Sbjct: 186 DVYTGDALRICIVTKEGIREETV 208

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (255), Expect = 3e-27
 Identities = 38/211 (18%), Positives = 66/211 (31%), Gaps = 9/211 (4%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  GTT+I  +  +GV+   +   T    V  +   K+  +  +I C  SG   D + + 
Sbjct: 27  VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLV 85

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK-IFRSNEGSFKAAIIIAGWDTVKGGQV 132
           +                +  P    R     Q     ++   F  + I  G D   G  +
Sbjct: 86  NRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD-KNGAHL 144

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDK---EWRANMKKQECIDFIKMGLSLAMARDY 189
           Y L  SG       A  G G       ++K        +  +E +      + LA   + 
Sbjct: 145 YMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNK 204

Query: 190 ASGGLINIGVL--ENGKPMEKLVFTQEEVQH 218
                + I          + K V   + +Q 
Sbjct: 205 EKDFELEISWCSLSETNGLHKFV-KGDLLQE 234

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (252), Expect = 7e-27
 Identities = 26/206 (12%), Positives = 67/206 (32%), Gaps = 2/206 (0%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V   +T I    ++GV+ G +       Y      ++L  +  ++    +G  AD ++++
Sbjct: 30  VENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLA 88

Query: 74  DLVSY-HIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
           D+      +    +GY    +      A  +      S    F  + ++  +    G Q+
Sbjct: 89  DIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQL 148

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y +  SGV         G         ++K     M  ++ +  +   + +         
Sbjct: 149 YMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKA 208

Query: 193 GLINIGVLENGKPMEKLVFTQEEVQH 218
             + +  +         +  ++  + 
Sbjct: 209 FELELSWVGELTNGRHEIVPKDIREE 234

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (251), Expect = 1e-26
 Identities = 39/196 (19%), Positives = 81/196 (41%), Gaps = 8/196 (4%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  G T++  +  NGV++  + +++    +      K++ ++ +I    SG   D + + 
Sbjct: 28  VKQGVTSLGIKATNGVVIATEKKSSSPLAMSET-LSKVSLLTPDIGAVYSGMGPDYRVLV 86

Query: 74  DLVSYHIDLDVAYGYREMNEPP---LVYRAANLFQKIFRSNEGS-FKAAIIIAGWDTVKG 129
           D           Y       PP   LV   A + Q+  +S     F  +++IAG D   G
Sbjct: 87  DKSRKVAHTS--YKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNG 144

Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDY 189
             +Y +  SG          G GS     +++K W   ++ ++ I    + L  ++  ++
Sbjct: 145 FSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF 204

Query: 190 ASGGLINIGVLENGKP 205
            +G  I + ++ +  P
Sbjct: 205 -NGDTIELAIIGDENP 219

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.1 bits (246), Expect = 2e-26
 Identities = 30/196 (15%), Positives = 77/196 (39%), Gaps = 6/196 (3%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G   +A   ++ V +  D R    +   + + EK+     +++   +G A D   ++++ 
Sbjct: 8   GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMF 66

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKG-GQVYAL 135
            Y  +    Y  +E            +   ++    G +    ++AG ++  G   +   
Sbjct: 67  RYKTN---LYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123

Query: 136 PASGV-LTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
              G     ++  V G+ S  + G  +  +  N++ ++  + I   L  A  RD  SG  
Sbjct: 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWG 183

Query: 195 INIGVLENGKPMEKLV 210
             + +++  + +++ +
Sbjct: 184 AVVYIIKKDEVVKRYL 199

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.8 bits (245), Expect = 2e-26
 Identities = 29/185 (15%), Positives = 70/185 (37%), Gaps = 5/185 (2%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
              I  +  + V++ +D            + +K+ K+S+ I     G A DT   ++ + 
Sbjct: 2   EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANL--FQKIFRSNEGSFKAAIIIAGWDTVKGGQVYAL 135
            ++ L   Y  R   E      A            +   +   +++AG+D  +G  +Y +
Sbjct: 62  KNVQL---YKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYM 118

Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLI 195
                L +   A  G G+   L  +D+ +   + ++  ++ ++  L     R   +    
Sbjct: 119 DYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTF 178

Query: 196 NIGVL 200
           ++ ++
Sbjct: 179 SVRII 183

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 99.3 bits (247), Expect = 4e-26
 Identities = 39/210 (18%), Positives = 85/210 (40%), Gaps = 8/210 (3%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  G T I  + + GV++ AD R            EK+ KI ++I    SG  AD + + 
Sbjct: 28  VKRGATAIGIKCKEGVILIADKRVGSKLLE-KDTIEKIYKIDEHICAATSGLVADARVLI 86

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK-IFRSNEGSFKAAIIIAGWDTVKGGQV 132
           D       ++       +    L  +  +  Q+         F  +++IAG +  +  ++
Sbjct: 87  DRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKL 144

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
           Y    SG L        G G   +  + +KE+R ++   + +    + + L++  +    
Sbjct: 145 YETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPE 204

Query: 193 GLINIGVL-ENGKPMEKLVFTQEEVQHFFN 221
             I +G +  + +  +++  + EE++ +  
Sbjct: 205 N-IEVGYVKVDDRTFKEV--SPEELKPYVE 231

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.8 bits (243), Expect = 1e-25
 Identities = 31/212 (14%), Positives = 70/212 (33%), Gaps = 10/212 (4%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  G+ T+  + +   ++ A  R            +K+  + ++I    +G  AD + + 
Sbjct: 26  VKQGSATVGLKSKTHAVLVALKRAQSELAAHQ---KKILHVDNHIGISIAGLTADARLLC 82

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK-IFRSNEGSFKAAIIIAGWDTVKGGQV 132
           + +            R +    LV    +  Q    R     +   ++IAG+D   G  +
Sbjct: 83  NFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHI 141

Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMK--KQECIDFIKMGLSLAMARDYA 190
           +    S           G+ S     Y+++     M+    E +      L   +  +  
Sbjct: 142 FQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQD 201

Query: 191 -SGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221
            +   ++IG++             ++V  F  
Sbjct: 202 LTTKNVSIGIVGKDLEFTIY--DDDDVSPFLE 231

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.1 bits (241), Expect = 2e-25
 Identities = 24/215 (11%), Positives = 57/215 (26%), Gaps = 11/215 (5%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
              ++A   ++  ++ +  +      +       +  IS  I    +G   D +  +   
Sbjct: 30  NINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRA 88

Query: 77  SY-HIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYAL 135
                +    YGY    +      A        R+        +     D   G  +Y  
Sbjct: 89  KAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKT 148

Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM------ARDY 189
             +G          G     I   ++  ++ +       +  +  +  A+          
Sbjct: 149 DPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE 208

Query: 190 ASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224
            S   + +GV    K       + E ++      A
Sbjct: 209 FSKNDLEVGVATKDKFF---TLSAENIEERLVAIA 240

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.7 bits (227), Expect = 2e-23
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 21/216 (9%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           +  G+ T+        ++ A  R         +   K+ K  +++    +G A D + +S
Sbjct: 28  IKQGSVTVGLRSNTHAVLVALKRNADELSSYQK---KIIKCDEHMGLSLAGLAPDARVLS 84

Query: 74  DLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGS-----FKAAIIIAGWDTV 127
           + +                N    V RA +L     + N  S     +   ++I G+D  
Sbjct: 85  NYLRQQ-----CNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK- 138

Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSS----YILGYVDKEWRANMKKQECIDFIKMGLSL 183
            G  +     SG +T       G+ S     Y+   +D   + +    E I      +S 
Sbjct: 139 SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQ 198

Query: 184 AMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
           ++  +  +   ++I ++    P        E V  +
Sbjct: 199 SLRDESLTVDNLSIAIVGKDTPFTIY--DGEAVAKY 232

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.3 bits (226), Expect = 4e-23
 Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 5/208 (2%)

Query: 14  VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
           V  G  ++  +  NGV++  + +     Y   R   K+  I+ +I    SG   D + + 
Sbjct: 28  VAGGAPSVGIKAANGVVLATEKKQKSILYD-ERSVHKVEPITKHIGLVYSGMGPDYRVLV 86

Query: 74  DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVY 133
                            +    LV R A++ Q+  +S         ++          ++
Sbjct: 87  HRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLF 146

Query: 134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
               SG          G        +++K +  +++ ++ I    + L  +         
Sbjct: 147 QSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDN 206

Query: 194 LINIGVLENGKPMEKLVFTQEEVQHFFN 221
            I +G+        +L  T  EV+ +  
Sbjct: 207 -IEVGICNE-AGFRRL--TPTEVKDYLA 230

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.1 bits (223), Expect = 1e-22
 Identities = 38/206 (18%), Positives = 82/206 (39%), Gaps = 6/206 (2%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
           G T++A   ++  ++    +      + +     L KI++NI C  +G  AD+++     
Sbjct: 35  GLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRA 93

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS-FKAAIIIAGWDTVKGGQVYAL 135
            Y           E+    L  R A++ Q   ++ E       +I+ G D  +G QVY  
Sbjct: 94  RYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKC 153

Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEW--RANMKKQECIDFIKMGLSLAMARDYASGG 193
             +G          G   +    +++K+   + +   ++ ++     LS  ++ D+    
Sbjct: 154 DPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSE 213

Query: 194 LINIGVLENGKPMEKLVFTQEEVQHF 219
            I +GV+    P  + + T+ E+   
Sbjct: 214 -IEVGVVTVENPKFR-ILTEAEIDAH 237

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 80.2 bits (197), Expect = 2e-19
 Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 13/187 (6%)

Query: 17  GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISD--NIYCCRSGTAADTQAISD 74
            TT  A +++    M  D + T G  V  +   +  +      +    +G+ AD   + +
Sbjct: 5   ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64

Query: 75  LVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYA 134
                ++         +    +         K+ R  E                 G+V  
Sbjct: 65  KFEAKLE----EYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIE 120

Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
                          GSG +Y L       +   +     +  +  L  A      +   
Sbjct: 121 -------PDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQ 173

Query: 195 INIGVLE 201
           I +  LE
Sbjct: 174 IILEELE 180

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 79.8 bits (196), Expect = 2e-19
 Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 12/180 (6%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
           TT +        +MG D + T G+ V    A K+ K+ +         +           
Sbjct: 1   TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60

Query: 78  YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
                 +      + +  +         ++ R  E        +      +   + +   
Sbjct: 61  EAK---LREWGGNLTKAAVELAKDWRTDRVLRRLEA-------LLLVADKENIFIISGNG 110

Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
             +    + A  GSG  Y L       R         + ++  +++A      +   I I
Sbjct: 111 EVIQPDDDAAAIGSGGPYALAAAKALLR--NTDLSAREIVEKAMTIAGEICIYTNQNIVI 168

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 79.8 bits (196), Expect = 2e-19
 Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 13/184 (7%)

Query: 18  TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDN-IYCCRSGTAADTQAISDLV 76
           TT ++      V++G D + +LG  V    A K+ ++ +  +    +G  AD   + +L 
Sbjct: 1   TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60

Query: 77  SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
              +                + ++A    K +R++    K   ++   D  +   +  + 
Sbjct: 61  ERKL----------EMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIG 110

Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
                        GSG +Y L            +    + ++  L +A      +     
Sbjct: 111 DVVQPEEDQILAIGSGGNYALSAARALVE--NTELSAHEIVEKSLRIAGDICVFTNTNFT 168

Query: 197 IGVL 200
           I  L
Sbjct: 169 IEEL 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	100.0
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	100.0
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	100.0
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	100.0
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.96
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	99.95
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	99.94

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-49  Score=322.20  Aligned_cols=203  Identities=43%  Similarity=0.788  Sum_probs=194.2

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      ...+++|||+|||+|+||||||+|+|.+.+.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+    ++
T Consensus         3 ~~~v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~----~~   78 (205)
T d1ryph_           3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYT----SQ   78 (205)
T ss_dssp             TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             CCcccCcceEEEEEECCEEEEEECCccccCceeeccccceEEEccCceEEeeccchhHHHHHHHHHHHHHHHHH----HH
Confidence            44589999999999999999999999999999999999999999999999999999999999999999999999    88


Q ss_pred             cCCCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCH
Q psy8684          91 MNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKK  170 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~  170 (226)
                      ++.+ ++..++++++++++++++||++++|+||||+.++|+||.+||.|++.+++++|+|+|+.+++++|++.|+++||.
T Consensus        79 ~~~~-~~~~~~~~~~~~~~~~~~p~~~~~lvaG~d~~~~p~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  157 (205)
T d1ryph_          79 YGTP-STETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSK  157 (205)
T ss_dssp             HSSC-CHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCH
T ss_pred             cCCc-cHHHHHHHHHHHHHhCccCceEEEEEEeecCCCCcEEEEECCCCcEEecCeEEeecCcHHHHHHHHhhhhcccCH
Confidence            8865 578899999999999999999999999999878999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhH
Q psy8684         171 QECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF  219 (226)
Q Consensus       171 ~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~  219 (226)
                      +||++++++||+.+.++|..++++++|++||+|| ++++.+.|+|++++
T Consensus       158 ~ea~~l~~~al~~a~~rD~~sg~~v~v~iitk~G-~~~~~~~~~e~~~~  205 (205)
T d1ryph_         158 EETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAG-VERLIFYPDEYEQL  205 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEECHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHhcCcCCCCEEEEEEcCCc-eEEEecCccccccC
Confidence            9999999999999999999999999999999999 98889999999863

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-48  Score=312.35  Aligned_cols=199  Identities=48%  Similarity=0.871  Sum_probs=193.5

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+    +.++.++++
T Consensus         1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHS----IELNEPPLV   76 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHTSCCCH
T ss_pred             CeEEEEEECCEEEEEECCccccCCeeecCCcceEEEcCCcEEEEeccchHHHHHHHHHHHHHHHHHH----HhcCCCCCH
Confidence            7999999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI  177 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la  177 (226)
                      +.++++++++++.+++||++++|++|+|++++|+||.+||.|++.+.+++|+|+|+.+++++|++.|+++|+.+||++++
T Consensus        77 ~~~a~~l~~~l~~~~~p~~~~~lvaG~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~~ea~~l~  156 (202)
T d1iruh_          77 HTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFT  156 (202)
T ss_dssp             HHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccceeEEEEEEEeecCCCcEEEEECCCCceeecceeEEeCCHHHHHHHHHHhhccCCcHHHHHHHH
Confidence            99999999999999999999999999998789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684         178 KMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN  221 (226)
Q Consensus       178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~  221 (226)
                      ++||+.+.++|..++++++|++|+++| ++++.++++||+.++.
T Consensus       157 ~~al~~a~~rD~~sg~~i~v~vi~~~G-~~~~~~~~d~~~~~~~  199 (202)
T d1iruh_         157 ANALALAMERDGSSGGVIRLAAIAESG-VERQVLLGDQIPKFAV  199 (202)
T ss_dssp             HHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEECGGGSCCCCC
T ss_pred             HHHHHHHHhhCCCCCCCEEEEEEeCCC-eEEEEcCHHHhhhhhh
Confidence            999999999999999999999999999 9889999999987754

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.8e-48  Score=310.92  Aligned_cols=199  Identities=23%  Similarity=0.386  Sum_probs=191.2

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|+++|+|+++|..+|++.+.++++.+++.|+    +.++.++++
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYE----LRNKERISV   76 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred             CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHHHHHHH----HhcCCCCch
Confidence            7999999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      +.+++++++++|.++ +||+++++++|+|+ .+|+||.+||+|++.+++++|+|+|+++++++|++.|+++||.+||+++
T Consensus        77 ~~~a~~l~~~~~~~~~~p~~~~~lvaG~d~-~~~~l~~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eea~~l  155 (201)
T d1irul_          77 AAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL  155 (201)
T ss_dssp             HHHHHHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred             hHHHHHHHHHhhhccCCCceEEEEEEEEec-CCceEEEEccCceEEEeeeEEecCchHHHHHHHHhhccCCCCHHHHHHH
Confidence            999999999999886 59999999999998 7999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +++||+.+.++|..++++++|++|+++| +  +.++++||.+++++.+
T Consensus       156 ~~~~l~~~~~~d~~sg~~~~v~~i~~~G-~--~~i~~~ev~~~~~~~~  200 (201)
T d1irul_         156 ARRAIYQATYRDAYSGGAVNLYHVREDG-W--IRVSSDNVADLHEKYS  200 (201)
T ss_dssp             HHHHHHHHHHHBTTCCSEEEEEEECSSC-E--EEEEEEEHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCceEEEEEeCCc-e--EEECHHHHHHHHHhhc
Confidence            9999999999999999999999999999 5  4589999999987654

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-48  Score=324.38  Aligned_cols=213  Identities=16%  Similarity=0.245  Sum_probs=200.3

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ +||+++|+|+|||+++||||||+|++.+++.++.+++.+||++|++||+|++||..+|++.+++.++.+++.|+   
T Consensus        22 yA-~kav~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~---   97 (250)
T d1iruc_          22 YA-MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYL---   97 (250)
T ss_dssp             HH-HHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccceEEECCCcEEEEeecccchHHHHHHHHHHHHHHHH---
Confidence            44 68999999999999999999999999999988888999999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       +.++.+++++.+++.+++++|.++     |||++++|++|||+++||+||.+||+|++.+++++|+|+|++.++++|++
T Consensus        98 -~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~~~gp~Ly~~Dp~G~~~~~~~~a~G~gs~~a~~~Le~  176 (250)
T d1iruc_          98 -LQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQ  176 (250)
T ss_dssp             -HHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHH
T ss_pred             -HHcCCCcchHHHHHHHHHHHHHHhhhccCCcceEEEEEEEEcCCCCCEEEEEcccccEeeeeEEEeCcChHHHHHHHHh
Confidence             999999999999999999999875     49999999999998778999999999999999999999999999999999


Q ss_pred             hhcC-CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-CeEEEEeChhhHhhHhhccCC
Q psy8684         163 EWRA-NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK-PMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       163 ~~~~-~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g-~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      .|++ +|+++||++++++||+.+.++|..++++++|++|++++ +..++.++++||++++..+++
T Consensus       177 ~y~~~~ms~eeai~la~~al~~~~~~d~~~~~~iei~ii~~~~~~~~~~~l~~~Ei~~~l~~~~e  241 (250)
T d1iruc_         177 DYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEE  241 (250)
T ss_dssp             HCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHHT
T ss_pred             hcccCCCCHHHHHHHHHHHHHHHhcccCCCCCeEEEEEEEcCCCceeEEECCHHHHHHHHHHHHH
Confidence            9985 89999999999999999999999999999999999986 334788999999999887654

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-48  Score=320.43  Aligned_cols=210  Identities=19%  Similarity=0.263  Sum_probs=198.3

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ ++|+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++++++++|.++|++.+.++++.+++.|+   
T Consensus        23 ya-~~ai~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   98 (244)
T d1rypc_          23 YA-LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYL---   98 (244)
T ss_dssp             HH-HHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHhcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccceEEEcCCCeEEEEecccCcHHHHHHHHHHHHHHHH---
Confidence            55 78999999999999999999999999999989888999999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       +.++++++++.+++.++++++.+     .+||++++|+||||+.++|+||.+||.|++.+++++|+|+|+.+++++|++
T Consensus        99 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~~~gp~Ly~id~~Gs~~~~~~~a~G~g~~~a~~~Le~  177 (244)
T d1rypc_          99 -KTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQM  177 (244)
T ss_dssp             -HHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHH
T ss_pred             -HHhCCCCCHHHHHHHHHHHHhhhhhccccCccceeEEEEEEecCCCceEEEecCCCcEeeeeeeeccchhHHHHHHHHh
Confidence             99999999999999999998865     369999999999998678999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCC---eEEEEeChhhHhhHhhc
Q psy8684         163 EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKP---MEKLVFTQEEVQHFFNH  222 (226)
Q Consensus       163 ~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~---~~~~~l~~~ei~~~~~~  222 (226)
                      .|+++|+++||++++++||+.+.++|..++++++|++|++++.   ..++.++++||++++..
T Consensus       178 ~~~~~ms~eeai~l~~~al~~a~~~d~~~~~~iei~ii~~~~~~~~~~~~~~~~~Ei~~~l~k  240 (244)
T d1rypc_         178 DYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK  240 (244)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCcccceeEEECCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999861   23678999999999864

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-47  Score=309.85  Aligned_cols=200  Identities=20%  Similarity=0.349  Sum_probs=191.3

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+|+||||||+|+|.++|.++.+++.+||++|+++|+|+++|..+|++.+.++++.+++.|+    +.+++++++
T Consensus         1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHE----LREKERISV   76 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred             CeEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEeccchHHHHHHHHHHHHHHHHHH----HhcCCCCcH
Confidence            7999999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      +.+++++++++|+++ .|++++.+++|+|++++|+||.+||+|++.+++++|+|+|+++++++|++.|+++||++||+++
T Consensus        77 ~~~a~~ls~~~~~~~~~p~~~~~~l~G~~~~~g~~Ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~mt~~ea~~l  156 (212)
T d1rypl_          77 AAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL  156 (212)
T ss_dssp             HHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCcceEeeeeEeecCCCCEEEEECCCceEEecceEEEccCcccchhHHHHhccCCCCHHHHHHH
Confidence            999999999999885 4999999999999878999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +++||+.+.++|..++++++|++|+++| +  +.++++||.+++..++
T Consensus       157 ~~~al~~~~~rd~~sg~~v~v~vi~~~g-~--~~~~~~ev~~~~~~~~  201 (212)
T d1rypl_         157 GKRSILAAAHRDAYSGGSVNLYHVTEDG-W--IYHGNHDVGELFWKVK  201 (212)
T ss_dssp             HHHHHHHHHHHBTTCCSEEEEEEEETTE-E--EEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCceEEEEEcCCc-e--EEeCHHHHHHHHHHHH
Confidence            9999999999999999999999999999 4  5789999999876553

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-47  Score=315.41  Aligned_cols=210  Identities=16%  Similarity=0.203  Sum_probs=194.6

Q ss_pred             CCCCccccCC-ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           8 ISAGTEVTCG-TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         8 ~~~~~ai~~g-ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      |+ .||+++| +|+|||+++||||||+|+|.++ .+...++.+||++|++|++|++||.++|++.+.+.++.+++.|+  
T Consensus        26 YA-~kav~~gg~t~igIk~~dgVVlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~--  101 (244)
T d1irua_          26 YA-FKAINQGGLTSVAVRGKDCAVIVTQKKVPD-KLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWK--  101 (244)
T ss_dssp             HH-HHHHHTTCCEEEEEECSSEEEEEEECCCCC-SSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH--
T ss_pred             HH-HHHHHhCCccEEEEEcCCEEEEEEeccccc-ccccCCccceEEEecCCcEEEEecchHHHHHHHHHHHHHHHHHH--
Confidence            66 7899986 5899999999999999999885 55567889999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        +.++++++++.+++.++++++.+     .|||++++|+||||+++||+||.+||+|++.+++++|+|+|+..++++||
T Consensus       102 --~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le  179 (244)
T d1irua_         102 --YKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE  179 (244)
T ss_dssp             --HHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHH
T ss_pred             --HHcCCCCCchHHHHHHHHHHHHHhcccccCccceeeEEEEEcCCCCcEEEEEcCCccEEecceEeccCchhHHHHHHH
Confidence              99999999999999999988865     36999999999999867899999999999999999999999999999999


Q ss_pred             hhhc--CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684         162 KEWR--ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       162 ~~~~--~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      +.|+  ++|+++||++++++||..+.++|.. .++++|++|++++ ..++.|+++||+++|..+++
T Consensus       180 ~~~~~~~d~t~eeai~l~~~~l~~~~~~d~~-~~~iev~ii~~~~-~~~~~l~~~ei~~~l~~~~~  243 (244)
T d1irua_         180 KKVKKKFDWTFEQTVETAITCLSTVLSIDFK-PSEIEVGVVTVEN-PKFRILTEAEIDAHLVALAE  243 (244)
T ss_dssp             HHTTSCCCCCHHHHHHHHHHHHHHHTTCCCC-TTSEEEEEEETTE-EEEEECCHHHHHHHHHHHHT
T ss_pred             hccccccCCCHHHHHHHHHHHHHHHHhcCCC-CCcEEEEEEEeCC-CcEEECCHHHHHHHHHHHhc
Confidence            9994  5899999999999999999999964 4779999999998 66889999999999998875

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.2e-46  Score=303.68  Aligned_cols=199  Identities=21%  Similarity=0.377  Sum_probs=189.8

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||.++|++.+.++++.+++.|+    +.++.++++
T Consensus         1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYR----LQRRVNMPI   76 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCEeecCCcccEEEecCCeeeecCCCcchHHHHHHHHHHHHHHHH----HhcCCCCcH
Confidence            7999999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      +.+++++++++++++ +||++++|+||+|.  +|+||.+||+|++.+++++|+|+|+++++++|++.|+++||++||+++
T Consensus        77 ~~~a~~l~~~~~~~~~~p~~~~~lvaG~d~--~p~l~~~d~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~eea~~l  154 (203)
T d1yarh1          77 EAVATLLSNMLNQVKYMPYMVQLLVGGIDT--APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDL  154 (203)
T ss_dssp             HHHHHHHHHHHHHTTTSCCCEEEEEEEESS--SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCccceeEEEEEcC--CCeeEecCCccceecccccccCCCcHHHHHHHHHhccCCCCHHHHHHH
Confidence            999999999999886 69999999999986  599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +.+||+.+.++|..+++.++|++|+++.+  ++.++++||+++++.+.
T Consensus       155 ~~~~l~~~~~~d~~~~~~v~v~ii~~~~g--~~~l~~~ei~~~~~~~~  200 (203)
T d1yarh1         155 VIRAISAAKQRDSASGGMIDVAVITRKDG--YVQLPTDQIESRIRKLG  200 (203)
T ss_dssp             HHHHHHHHHHHCTTCCSCCEEEEEETTTE--EEECCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCCCeEEEEEEECCCC--EEECCHHHHHHHHHHhC
Confidence            99999999999999999999999997642  56799999999998763

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.8e-46  Score=301.99  Aligned_cols=199  Identities=23%  Similarity=0.414  Sum_probs=190.3

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.+.+.++.+++.+||++|+++|+|++||..+|++.+.++++.+++.|+    +.++.++++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYE----IRRERKPTV   76 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCeeccCccceEEEecCcEEEEecCcchhHHHHHHHHHHHhhhhh----hccCCCccH
Confidence            7999999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceee-eeeEEecCChHHHHHHHhhhhcCCCCHHHHHH
Q psy8684          98 YRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTR-QNCAVGGSGSSYILGYVDKEWRANMKKQECID  175 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~-~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~  175 (226)
                      +.+++.+++++|.+| +||++++|+||+|+ .+|+||.+||+|++.+ .+++|+|+|+++++++|++.|+++||++||++
T Consensus        77 ~~~a~~~~~~~~~~~~~p~~~~~lvaG~d~-~~~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~  155 (202)
T d1j2qh_          77 RAIATLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVE  155 (202)
T ss_dssp             HHHHHHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccceeeEEEEEEEcC-CCceEEEEeCCCCeEeecceEEccCChHHHHHHHHhhcCCCCCHHHHHH
Confidence            999999999999987 49999999999998 7899999999999765 56999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         176 FIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       176 la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      ++++||+.+.++|..+++++++++|+++| +  +.++++||++++.+++
T Consensus       156 l~~~al~~~~~~d~~~g~~v~v~~i~~~g-~--~~~~~~ei~~~l~~~~  201 (202)
T d1j2qh_         156 LAVRAIYSAMKRDSASGDGIDVVKITEDE-F--YQYSPEEVEQILAKFR  201 (202)
T ss_dssp             HHHHHHHHHHTTCTTSCSCEEEEEECSSC-E--EECHHHHHHHHGGGTT
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEEECCC-E--EEeCHHHHHHHHHHhh
Confidence            99999999999999999999999999999 5  5799999999999875

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-47  Score=315.91  Aligned_cols=209  Identities=18%  Similarity=0.290  Sum_probs=192.7

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHH-hhhhc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHID-LDVAY   86 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~   86 (226)
                      |+ .||+++|+|+|||+++||||||+|+|.+++ ++..++.+||++|++|++|++||.++|++.++++++.+++ .|+  
T Consensus        23 yA-~kav~~G~tvvgi~~~dgVvlaad~r~~~~-~~~~~~~~ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~y~--   98 (250)
T d1rypb_          23 YA-LTAVKQGVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYK--   98 (250)
T ss_dssp             HH-HHHHHTSCCEEEEEETTEEEEEEECCCSCS-SBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTH--
T ss_pred             HH-HHHHHcCCCEEEEEeCCEEEEEEecccCCc-cccccccceeEeccCCEEEEeeecccHHHHHHHHHHHHHHHHHH--
Confidence            45 789999999999999999999999998875 4567889999999999999999999999999999999986 577  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        ..++.+++++.+++.+++++|.++     +||++++|+||||+++||+||.+||.|++.+++++|+|+|+.+++++|+
T Consensus        99 --~~~~~~~~~~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le  176 (250)
T d1rypb_          99 --RIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLE  176 (250)
T ss_dssp             --HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHH
T ss_pred             --HhcCCCCCHHHHHHHHHHHHHHHhhhcCCcCeeEEEEEEEecCCCCCEEEEEcCcEEEEEeeEEecCcchHHHHHHHH
Confidence              889999999999999999998764     5999999999999877899999999999999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-------------CeEEEEeChhhHhhHhhcc
Q psy8684         162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK-------------PMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g-------------~~~~~~l~~~ei~~~~~~~  223 (226)
                      +.|+++|+++||++++++||+.+.++|. ++.+++|++|++++             ...++.|+++||+++++.|
T Consensus       177 ~~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~vi~~~~~~~~~~~~v~~~~~~~fr~ls~eei~~~l~~l  250 (250)
T d1rypb_         177 KRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL  250 (250)
T ss_dssp             HHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHTTC
T ss_pred             HhcccCCCHHHHHHHHHHHHHHHhhccC-CCCCEEEEEEeCCCcccccccccccccCCceEECCHHHHHHHHHhC
Confidence            9999999999999999999999999985 67899999999864             1347889999999999875

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-47  Score=313.97  Aligned_cols=206  Identities=21%  Similarity=0.279  Sum_probs=191.5

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+|+++|+|+|||+++||||||+|++.+.+ ++..++.+||++|++++++++||..+|++.+.+.++.++..|+   
T Consensus        19 Ya-~kav~~G~t~vgik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   93 (234)
T d1irue_          19 YD-IEAIKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHW---   93 (234)
T ss_dssp             HH-HHHHTTSCCEEEEEETTEEEEEEECCCCCT-TBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHHcCCCEEEEEeCCEEEEEEecCccCC-CcccCcccCEEEccCcEEEEEeeccchHHHHHHHHHHHHHHHH---
Confidence            55 789999999999999999999999999886 4557888999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc----------cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHH
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSN----------EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYIL  157 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~----------~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~  157 (226)
                       ++++++++++.+++.+++++|.+          .+||++++|+||||+ +||+||.+||+|++.+++++|+|+|++.++
T Consensus        94 -~~~~~~i~~~~la~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D~-~gp~Ly~idp~G~~~~~~~~a~G~gs~~~~  171 (234)
T d1irue_          94 -FTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQ  171 (234)
T ss_dssp             -HHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHH
T ss_pred             -HhhCCCCCHHHHHHHHHHHHHHHhhcccccccccccceEEEEEEEEcC-CCCEEEEEecCcccceeeeEEeCCchHHHH
Confidence             99999999999999999999865          369999999999998 789999999999999999999999999999


Q ss_pred             HHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684         158 GYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       158 ~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~  223 (226)
                      ++||+.|+++|+++||++++++||+.+.++|. +++++||++|+++++  ++.|+++||++++.+|
T Consensus       172 ~~Le~~~~~~~~~eeai~~a~~al~~~~~~~~-~~~~iei~ii~~~~~--~k~l~~~ei~~~l~~i  234 (234)
T d1irue_         172 SSLQELYHKSMTLKEAIKSSLIILKQVMEEKL-NATNIELATVQPGQN--FHMFTKEELEEVIKDI  234 (234)
T ss_dssp             HHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCC-CTTSEEEEEECSSSC--CEECCHHHHHHHHTTC
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHhccC-CCCCEEEEEEECCCC--EEECCHHHHHHHHHhC
Confidence            99999999999999999999999999988775 667899999998753  4689999999999875

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=4.6e-47  Score=309.91  Aligned_cols=203  Identities=18%  Similarity=0.332  Sum_probs=189.7

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ ++|+++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++++++|..+|++.+.++++.+++.|+   
T Consensus        14 Ya-~~av~~G~t~vgi~~~dgVvlaad~r~~-~~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   88 (221)
T d1yara1          14 YA-REAVKKGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEK---   88 (221)
T ss_dssp             HH-HHHHTTSCCEEEEEETTEEEEEECCCCC-CTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHhcCCcEEEEEeCCEEEEEEecccC-CcccccCccceEEEecCCceEEeeeccchHHHHHHHHHHHHHHHH---
Confidence            45 7899999999999999999999999987 466778889999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       ++++++++++.+++.++.+++.++     +||++++|+||||+ +||+||.+||.|++.+++++|+|+|++.++++|++
T Consensus        89 -~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rP~~~~~li~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~  166 (221)
T d1yara1          89 -VTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLER  166 (221)
T ss_dssp             -HHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHH
T ss_pred             -HHcCCcchHHHHHHHHHHHHHHHhhhccCCCcceEEEEEEEec-CCCeEEEEcCCccEEEeeEEEECCchHHHHHHHHH
Confidence             999999999999999999998774     59999999999998 78999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684         163 EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF  220 (226)
Q Consensus       163 ~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~  220 (226)
                      .|+++||++||++++++||..+.++|. +.+.++|++|+++++  ++.|+++||+++|
T Consensus       167 ~~~~~ms~~ea~~la~~~l~~~~~~~~-~~~~~ei~~i~~~~~--~r~l~~~ei~~~l  221 (221)
T d1yara1         167 EYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNK--YRIYDQEEVKKFL  221 (221)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSC--CEECCHHHHHTTC
T ss_pred             HhhccccHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEcCCC--EEECCHHHHHHhC
Confidence            999999999999999999999988775 567899999998763  5689999999875

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-47  Score=312.54  Aligned_cols=208  Identities=10%  Similarity=0.085  Sum_probs=193.5

Q ss_pred             CCCCccccC-CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684           8 ISAGTEVTC-GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY   86 (226)
Q Consensus         8 ~~~~~ai~~-gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   86 (226)
                      |+ .||+++ |+|+|||+++||||||+|+|.++ .++..+..+||++|++|++|++||.++|++.+.++++.+++.|+  
T Consensus        21 YA-~~av~~~g~T~igik~~dgVvlaad~r~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~--   96 (243)
T d1rypa_          21 YA-FKATNQTNINSLAVRGKDCTVVISQKKVPD-KLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFR--   96 (243)
T ss_dssp             HH-HHHTTTTCCCEEEEECSSEEEEEEECCCCC-TTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHH--
T ss_pred             HH-HHHHHccCceEEEEEcCCEEEEEEeccccc-cccccCcccceEecCCCEEEEEecCcHHHHHHHHHHHHHHHHHH--
Confidence            55 789987 56899999999999999999886 67788889999999999999999999999999999999999999  


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                        +.++.+++++.+++.+++++|.+     .|||++++|++|||+++||+||.+||+|++.+++++|+|+|+..++++|+
T Consensus        97 --~~~~~~~~~~~~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le  174 (243)
T d1rypa_          97 --YKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLE  174 (243)
T ss_dssp             --HHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHH
T ss_pred             --HHhCCCCCHHHHHHHHHHHHHHHhhcccccCccceEEEEEEccCCCCeEEEEcCCEEEEecceEEeCccHHHHHHHHH
Confidence              99999999999999999988765     46999999999999867999999999999999999999999999999999


Q ss_pred             hhhcC-------CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684         162 KEWRA-------NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       162 ~~~~~-------~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      +.|++       +++.+||++++++||+.+.++|. ++.+++|++++++|   ++.++++||++++..+|+
T Consensus       175 ~~~~~~~~~~~~~~s~eeav~la~~~l~~~~~~d~-~~~~iei~iitk~g---~~~l~~eeI~~~l~~i~e  241 (243)
T d1rypa_         175 NHFKKSKIDHINEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKDK---FFTLSAENIEERLVAIAE  241 (243)
T ss_dssp             HHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCC-CTTSEEEEEEETTE---EEECCHHHHHHHHHHHTT
T ss_pred             HHhhcccccccccccHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCCc---eEEeCHHHHHHHHHHHhc
Confidence            99985       45899999999999999999996 67899999999998   467999999999999986

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-46  Score=300.03  Aligned_cols=194  Identities=14%  Similarity=0.231  Sum_probs=184.2

Q ss_pred             CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      .+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.+.++.+++.|+    ++++.+++
T Consensus         1 m~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~   76 (198)
T d1rypk_           1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYS----IREDYELS   76 (198)
T ss_dssp             CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHHTSCCC
T ss_pred             CeEEEEEEECCEEEEEEcCCcccCCEeecCccceEEEecCCEEEEecCCcccHHHHHHHHHHHHHHHH----HHhCCCcc
Confidence            37999999999999999999999999999999999999999999999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHHHhc---cCCceeEEEEEEEeCC-CCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHH
Q psy8684          97 VYRAANLFQKIFRSN---EGSFKAAIIIAGWDTV-KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQE  172 (226)
Q Consensus        97 ~~~~a~~l~~~~~~~---~~p~~v~~liaG~d~~-~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~e  172 (226)
                      ++.+++++++.++++   ++||++++|+||||+. ++|+||.+||.|++.+++++|+|+|+.+++++|++.|+++||++|
T Consensus        77 ~~~~~~~i~~~~~~~~~~~~P~~~~~liaG~D~~~~~p~L~~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~ee  156 (198)
T d1rypk_          77 PQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEE  156 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEEEecCCCceEEEEecccccEEecceEEEeccchhhHHHHHhcccccCCHHH
Confidence            999999999999864   4699999999999973 589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHh
Q psy8684         173 CIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQ  217 (226)
Q Consensus       173 ai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~  217 (226)
                      |++++.+||+.+.++|..+++++++++|++|| +  +.++++|++
T Consensus       157 a~~l~~~~l~~~~~~d~~s~~~~~v~vi~~dG-~--~~~~~~~~~  198 (198)
T d1rypk_         157 GLDLLKLCVQELEKRMPMDFKGVIVKIVDKDG-I--RQVDDFQAQ  198 (198)
T ss_dssp             HHHHHHHHHHHHHHHCSBCCCCEEEEEEETTE-E--EEECCCSCC
T ss_pred             HHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-e--EEcchhccC
Confidence            99999999999999999999999999999999 5  468888764

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.3e-46  Score=308.94  Aligned_cols=207  Identities=19%  Similarity=0.291  Sum_probs=192.3

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .||+++|+|+|||+++||||||+|+|.+++.+ ..++.+||++|+++++|++||..+|++.+.++++.+++.|+   
T Consensus        23 ya-~kav~~G~t~Igik~~dgVvlaad~r~~~~~~-~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   97 (243)
T d1j2pa_          23 YA-REAVKRGATAIGIKCKEGVILIADKRVGSKLL-EKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINR---   97 (243)
T ss_dssp             HH-HHHHHTSCCEEEEEETTEEEEEEECCCSCTTB-CGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHHcCCCEEEEEECCEEEEEEecCccccCc-cccccccEeecCCcEEEEeeecccHHHHHHHHHHHHHHHHH---
Confidence            55 78999999999999999999999999999764 45788999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       +.++.+++++.+++.+++++|.++     |||++++|+||+|+  +|+||.+||.|++.+++++|+|+|+..++++|++
T Consensus        98 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D~--~p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~  174 (243)
T d1j2pa_          98 -LTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE--VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEK  174 (243)
T ss_dssp             -HHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESS--SEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHH
T ss_pred             -HhhCCCCcHHHHHHHHHHHHHHHhhhccCCccceeEEEEEecC--CceEEEEeccCceeeeeEEEeCCCcHHHHHHHHh
Confidence             999999999999999999999764     49999999999985  5999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         163 EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       163 ~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      .|+++||++||++++++||+.+.++|.. ++++||+++++++ ..++.++++||+.++..++
T Consensus       175 ~y~~~ms~eeai~la~~~l~~~~~~d~~-~~~iei~iv~~~~-~~~~~l~~~ei~~~~~~~~  234 (243)
T d1j2pa_         175 EYRDDLSFDDAMVLGLVAMGLSIESELV-PENIEVGYVKVDD-RTFKEVSPEELKPYVERAN  234 (243)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHHTSCCC-GGGEEEEEEETTT-CCCEECCHHHHHHHHHHHH
T ss_pred             hcccCCCHHHHHHHHHHHHHHHHhcccC-CCceEEEEEEeCC-CcEEECCHHHHHHHHHHHH
Confidence            9999999999999999999999999975 4789999999876 3367899999999987764

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-46  Score=309.19  Aligned_cols=208  Identities=20%  Similarity=0.252  Sum_probs=192.6

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+|+++|+|+|||+++||||||+|+|.+.+ +...++.+||++|+++++|++||..+|++.+.++++.+++.|+   
T Consensus        18 ya-~~a~~~G~t~Vgi~~~dgVvla~d~r~~~~-~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   92 (242)
T d1rype_          18 YS-LEAIKLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHN---   92 (242)
T ss_dssp             HH-HHHHTTSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHHcCCCEEEEEeCCEEEEEEeCCccCc-CcccCccceEEEcCCCEEEEEeecchhHHHHHHHHHHHHHHHH---
Confidence            45 789999999999999999999999999986 6677889999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc-----------cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHH
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSN-----------EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYI  156 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~-----------~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~  156 (226)
                       ++++++++++.+++.+++++|.+           .+||++++|++|+|++++|+||.+||+|++.+++++|+|+|+.++
T Consensus        93 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~rP~~~~~ii~G~D~~~~p~L~~idp~G~~~~~~~~a~G~gs~~~  171 (242)
T d1rype_          93 -LYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGA  171 (242)
T ss_dssp             -HHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHH
T ss_pred             -HHcCCCCchhHHHHHHHHHHHHHhccccccchhccccceEEEEEEEeccccceEEEEEcCCCceeccceeecccchHHH
Confidence             99999999999999999988865           259999999999998788999999999999999999999999999


Q ss_pred             HHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         157 LGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       157 ~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +++|++.|+++||++||++++++||+.+.++|.. .+.+++.+|+++.+  ++.++++||++++.++.
T Consensus       172 ~~~Le~~~~~~ms~~ea~~la~~~l~~~~~~~~~-~~~~~v~~i~~~~g--~~~l~~~~i~~~~~~i~  236 (242)
T d1rype_         172 QAELLNEWHSSLTLKEAELLVLKILKQVMEEKLD-ENNAQLSCITKQDG--FKIYDNEKTAELIKELK  236 (242)
T ss_dssp             HHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCC-TTSEEEEEEETTTE--EEECCHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCC-CCceEEEEEECCCC--eEECCHHHHHHHHHHHH
Confidence            9999999999999999999999999999998864 56799999987542  56899999999998765

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-46  Score=306.78  Aligned_cols=206  Identities=15%  Similarity=0.245  Sum_probs=193.9

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ +||+++|+|+|||+++||||||+|+|.+++.+ ..++.+||++|+++++|+++|..+|++.+.++++.+++.|+   
T Consensus        23 ya-~kav~~G~tvigik~~dgVvlaaD~r~~~~~~-~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   97 (233)
T d1irub_          23 YA-LAAVAGGAPSVGIKAANGVVLATEKKQKSILY-DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYY---   97 (233)
T ss_dssp             HH-HHHHHTSCCEEEEECSSCEEEEEECCCCCSSB-CSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHHcCCCEEEEEeCCEEEEEEeCCcccCCc-cccccceEEEecCceEEEEeccchHHHHHHHHHHHHHHHHH---
Confidence            55 78999999999999999999999999998764 57889999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       .+++++++++.+++.++++++.++     +|++++++++|+|+ ++|+||.+||.|++.+++++|+|+|+.+++++|++
T Consensus        98 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d~-~~~~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~  175 (233)
T d1irub_          98 -LVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEK  175 (233)
T ss_dssp             -HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred             -HHhCCCCCHHHHHHHHHHHHHHHhhccccccceEEEeeeeccc-CCceEEEEcCCcceEeccceecCCcHHHHHHHHHh
Confidence             999999999999999999998664     59999999999998 79999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         163 EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       163 ~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      .|+++|+++||++++++||+.+.++|.. .++++|++++++| +  +.++|+||++++..+|
T Consensus       176 ~~~~~ms~eea~~l~~~~L~~~~~~d~~-~~~vev~ii~~~g-~--~~l~~~eI~~~l~~i~  233 (233)
T d1irub_         176 RYNEDLELEDAIHTAILTLKESFEGQMT-EDNIEVGICNEAG-F--RRLTPTEVKDYLAAIA  233 (233)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHTTCCSCCC-SSSEEEEEEETTE-E--EECCHHHHHHHHTTCC
T ss_pred             hcccCccHHHHHHHHHHHHHHHHhccCC-CCcEEEEEEeCCC-e--EECCHHHHHHHHHHhC
Confidence            9999999999999999999999999874 5789999999998 4  6799999999999886

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-46  Score=306.50  Aligned_cols=202  Identities=16%  Similarity=0.224  Sum_probs=188.6

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+|+++|+|+|||+++||||||+|++.+++.   .++.+||+.|+++++|++||.++|++.++++++.+++.|+   
T Consensus        23 yA-~kav~~g~t~igi~~~dgvvlaad~~~~~~l---~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~---   95 (233)
T d1rypf_          23 YA-LEAIKQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSS---   95 (233)
T ss_dssp             HH-HHHHHTSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHHcCCCEEEEEECCeEEEEEeccccccC---CcchheEEEcCCCEEEEEeeccccHHHHHHHHHHHHHhhh---
Confidence            56 8999999999999999999999999998753   4677999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       ++++++++++.+|+.+++++|.+     +|||++++|+||||+ .||+||.+||+|++.+++++|+|+|++.++++|++
T Consensus        96 -~~~~~~i~~~~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d~-~g~~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~  173 (233)
T d1rypf_          96 -LVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER  173 (233)
T ss_dssp             -HHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHH
T ss_pred             -hhcCCCCcHHHHHHHHHHHHHHHhcccccCCccceEEEEEEcC-CCCEEEEEccccceecccEEEecCchHHHHHHHHH
Confidence             99999999999999999999865     469999999999998 68999999999999999999999999999999997


Q ss_pred             hh----cCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684         163 EW----RANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF  220 (226)
Q Consensus       163 ~~----~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~  220 (226)
                      .|    +++|+++||++++++||..+.++|..++..+||++|++++ . +++++++||+.++
T Consensus       174 ~~~~~~~~dms~eeai~l~~~~l~~~~~~d~~~~~~iev~ii~k~~-~-~~~l~~~ei~~~i  233 (233)
T d1rypf_         174 TLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDT-P-FTIYDGEAVAKYI  233 (233)
T ss_dssp             HHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTE-E-EEEEEGGGGGGGC
T ss_pred             HHhhccccCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEECCC-C-eEECCHHHHHhhC
Confidence            65    5799999999999999999999999999999999999987 3 6789999999875

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-45  Score=301.51  Aligned_cols=195  Identities=28%  Similarity=0.487  Sum_probs=186.4

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+|+||||||+|+|.++|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+    +++|.++++
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHS----LSTGRLPRV   76 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHHCSCCCH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCEeecCCcccEEEecCcEEEEEccccHHHHHHHHHHHHHHHHHH----HhcCCCCCH
Confidence            7999999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI  177 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la  177 (226)
                      +.++++++++++++++|+++++|+||+|+ +||+||.+||.|++.+++++|+|+|+.+++++|++.|+++||++||++++
T Consensus        77 ~~~a~~l~~~~y~~~~p~~~~~ivaG~D~-~g~~L~~id~~G~~~~~~~~a~Gsgs~~a~~~L~~~~~~~~s~~ea~~l~  155 (220)
T d1irui_          77 VTANRMLKQMLFRYRGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV  155 (220)
T ss_dssp             HHHHHHHHHHHHHTTTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred             HHHHHHHHhhhhhcccccceeEEEEEEeC-CCcEEEEEeCCCcEEEeeEEEEccccHHHHHHHHHhcccCCCHHHHHHHH
Confidence            99999999999999999999999999998 78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684         178 KMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF  220 (226)
Q Consensus       178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~  220 (226)
                      ++||+.+.++|..++++++|++|++|| +  +.+.+.+++.-+
T Consensus       156 ~~al~~~~~~D~~sg~~i~i~vitkdg-~--~~~~~~~~~~~~  195 (220)
T d1irui_         156 SEAIAAGIFNDLGSGSNIDLCVISKNK-L--DFLRPYTVPNKK  195 (220)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEEETTE-E--ECCSEEECCCCC
T ss_pred             HHHHHHhhccCCCCCCcEEEEEEECCC-e--EEeCcccccchh
Confidence            999999999999999999999999999 5  356777666543

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.2e-46  Score=305.67  Aligned_cols=208  Identities=14%  Similarity=0.187  Sum_probs=190.8

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+|+++|+|+|||+++||||||+|+|.+++..   .+.+||++|+++|+|++||.++|++.++++++.+++.|+   
T Consensus        21 YA-~kav~~G~t~vgik~~dgVvlaad~~~~~~~~---~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   93 (238)
T d1iruf_          21 YA-MEAVKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSR---   93 (238)
T ss_dssp             HH-HHHHHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHhcCCCEEEEEeCCEEEEEEecccccCCC---CccceEEEeCCceEEEEeccchHHHHHHHHHHHHHHHHH---
Confidence            55 78999999999999999999999999998643   356899999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       +++|.+++++.+++.++++.|.+     .|||++++|+||||+ .||+||.+||+|++.+++++|+|+|++.++++|++
T Consensus        94 -~~~~~~i~~~~l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D~-~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Lek  171 (238)
T d1iruf_          94 -FVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLER  171 (238)
T ss_dssp             -HHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHH
T ss_pred             -HHcCCCcchHHHHHHHHHHHHHHhhccCCCcccceEEEEEEcC-CCceEEEEcCCCCEEeeeeEEECCCchhhHHHHHh
Confidence             99999999999999999887765     369999999999998 78999999999999999999999999999999999


Q ss_pred             hhcCCC--CHHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCCC
Q psy8684         163 EWRANM--KKQECIDFIKMGLSLAMARDY-ASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEATF  226 (226)
Q Consensus       163 ~~~~~~--s~~eai~la~~~l~~~~~~d~-~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~~  226 (226)
                      .|+++|  +++||++++++||..+..++. .++..|+|++|+++++  +++++++||++++..+++.
T Consensus       172 ~~~~~~~~~~~eav~lai~al~~~~~~~~~~~~~~iev~ii~k~~~--~~~l~~~ei~~~l~~i~ek  236 (238)
T d1iruf_         172 HMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLE--FTIYDDDDVSPFLEGLEER  236 (238)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEE--EEEECSGGGHHHHTTCCCC
T ss_pred             hcccccCCCHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeCCCC--EEECCHHHHHHHHHHHHhC
Confidence            999865  899999999999999876554 4778999999999863  6789999999999998763

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-46  Score=309.05  Aligned_cols=207  Identities=11%  Similarity=0.103  Sum_probs=187.7

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+|+++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|++||+|++||..+|++.++++++.+++.|+   
T Consensus        25 Ya-~~av~~G~t~VGik~~dgVvlaad~~~~~~-~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   99 (245)
T d1irug_          25 YA-MKAVENSSTAIGIRCKDGVVFGVEKLVLSK-LYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFR---   99 (245)
T ss_dssp             HH-HHHHHTSCCEEEEECSSBEEEEEEEECSCT-TBCTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHHcCCcEEEEEeCCEEEEEEecccccc-ccccCccceEEEcCCCEEEEeccCchhHHHHHHHHHHHHHHHH---
Confidence            66 899999999999999999999999998875 4567888999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       +++|.+++++.+++.+++++|.++     |||++++|++|||++++|+||.+||+|++.+++++|+|+|++.++++||+
T Consensus       100 -~~~g~~i~~~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~a~~~Le~  178 (245)
T d1irug_         100 -SNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK  178 (245)
T ss_dssp             -HHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTT
T ss_pred             -HHhCCCCCHHHHHHHHHHHHHHhhccccccccceEEEEEEEcCCCCceEEEEcCCceEEeeeEEEECCccHHHHHHHHh
Confidence             999999999999999999998774     49999999999998689999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684         163 EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN  221 (226)
Q Consensus       163 ~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~  221 (226)
                      .|+++||.+||++++++||+.+.+++...+.++++.+|+++++-. +.+.+.|+.+...
T Consensus       179 ~~~~dmt~eea~~l~~~~l~~~~~~~~~~~~~iei~~v~~~~~~~-~~~~~~e~~~~~~  236 (245)
T d1irug_         179 LQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGR-HEIVPKDIREEAE  236 (245)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTC-CEECCHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEecCCCe-EEEChHHHHHHHH
Confidence            999999999999999999999998877777889999998863122 3456666655544

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-45  Score=302.68  Aligned_cols=208  Identities=18%  Similarity=0.285  Sum_probs=192.8

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .||+++|+|+|||+++||||||+|+|.+++.++...+.+||++|++|++|++||..+|++.++++++.+++.|+   
T Consensus        20 ya-~kav~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   95 (241)
T d1rypd_          20 YA-LEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHR---   95 (241)
T ss_dssp             HH-HHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHHcCCCEEEEEeCCEEEEEEEccccccCcccccccccEEEeCCCEEEEeeeccchHHHHHHHHHHHHHHHH---
Confidence            56 78999999999999999999999999999888777889999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCC-CCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTV-KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD  161 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~-~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le  161 (226)
                       ++++.+++++.+++.++.++|.++     |||++++|+||||+. ++|+||.+||+|++.+++++|+|+|++.++++|+
T Consensus        96 -~~~~~~i~~~~la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le  174 (241)
T d1rypd_          96 -LTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLE  174 (241)
T ss_dssp             -HHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHH
T ss_pred             -HHcCCCCCHHHHHHHHHHHHHHHhhccccCcccceEEEEEEccccCcceEEEecCCEEEEeeCeEEECcCHHHHHHHHH
Confidence             999999999999999999999774     599999999999963 6899999999999999999999999999999999


Q ss_pred             hhhcC---CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684         162 KEWRA---NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       162 ~~~~~---~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      +.|++   +|+.+|++++|++||..+.+++   +.+++|+++++|++  ++.|+++||++++.+|++
T Consensus       175 ~~~~~~~~~~t~~e~i~lal~al~~~~~~~---~~~iei~ii~~d~~--~~~l~~~ei~~~l~~i~~  236 (241)
T d1rypd_         175 KNYDRKEPPATVEECVKLTVRSLLEVVQTG---AKNIEITVVKPDSD--IVALSSEEINQYVTQIEQ  236 (241)
T ss_dssp             TTCCTTSCCCSHHHHHHHHHHHHHHHHCSC---STTEEEEEEETTTE--EEECCHHHHHHHHHHHTH
T ss_pred             HhhhcccCCCCHHHHHHHHHHHHHHHhcCC---CCcEEEEEEECCCC--EEECCHHHHHHHHHHHHH
Confidence            99964   6999999999999999988654   57899999999873  467999999999988763

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-45  Score=303.23  Aligned_cols=207  Identities=15%  Similarity=0.274  Sum_probs=189.1

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|++||..+|++.++++++.+++.|+   
T Consensus        20 ya-~kav~~G~Tvvgik~~dgVvla~d~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   94 (243)
T d1irud_          20 YA-QEAVKKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHR---   94 (243)
T ss_dssp             HH-HHHHHTSCCEEEECCSSEEEEEECCCCC-CSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHhcCCCEEEEEeCCEEEEEEecccc-CcccCCCccccEEECCCCEEEEEEEchhhHHHHHHHHHHHHHHHH---
Confidence            45 6899999999999999999999999976 578889999999999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       ++++.+++++.+++.+++++|.+     .|||++++|++|||++++|+||.+||+|++.+++++|+|+|+..++++|++
T Consensus        95 -~~~~~~i~v~~la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~~~~p~Ly~idp~G~~~~~~~~a~G~gs~~a~~~Lek  173 (243)
T d1irud_          95 -LTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEK  173 (243)
T ss_dssp             -HHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTT
T ss_pred             -HhcCCCccHHHHHHHHHHHHHHHHhcccCCccceEEEEEEEcCCCCCEEEEecCcEEEEeccEEEECCChHHHHHHHHH
Confidence             99999999999999999999876     369999999999998678999999999999999999999999999999999


Q ss_pred             hhcCCC--CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684         163 EWRANM--KKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT  225 (226)
Q Consensus       163 ~~~~~~--s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~  225 (226)
                      .|+++|  +.++++++++++|.....   .++.+++|++++++++  +++++++||++++..++.
T Consensus       174 ~~~~~~~~~~~~~i~~ai~~l~~~~~---~~~~~vei~ii~k~~~--~~~l~~~eI~~~l~~i~~  233 (243)
T d1irud_         174 NYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQS--LKILNPEEIEKYVAEIEK  233 (243)
T ss_dssp             TCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSC--EECCCHHHHHHHTTTTTT
T ss_pred             hcccCCCccHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCC--EEECCHHHHHHHHHHHHh
Confidence            999988  777788888888776543   4567899999999853  567999999999988764

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-45  Score=300.74  Aligned_cols=207  Identities=18%  Similarity=0.189  Sum_probs=191.1

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      ++++..|||+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.+.++.+++.|+    ++
T Consensus         2 ~~~i~tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~----~~   77 (233)
T d1ryp2_           2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENA----YD   77 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH----TT
T ss_pred             CCCccccceEEEEEECCEEEEEECCCcccCCeeecCCcceEEEeCCCEEEEeccCchHHHHHHHHHHHHHHHHH----Hh
Confidence            78999999999999999999999999998899999999999999999999999999999999999999999888    65


Q ss_pred             c-----CCCCCHHHHHHHHHHHHHhc---cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          91 M-----NEPPLVYRAANLFQKIFRSN---EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        91 ~-----~~~~~~~~~a~~l~~~~~~~---~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                      +     +..+++..++++++++++..   .+||++++|++|+|.+++|+||.+||.|++.+.+++|+|+|+++++++|++
T Consensus        78 ~~~~~~~~~~~~~~~a~~l~~~~y~~~~~~~P~~~~~liaG~d~~g~~~ly~~d~~G~~~~~~~~a~G~g~~~a~~~Le~  157 (233)
T d1ryp2_          78 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRK  157 (233)
T ss_dssp             CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTT
T ss_pred             hCCCCCCcccCHHHHHHHHHHHHHhhccccCCceeEEEEEEEcCCCCeEEEEEcCCCcEEeeeeEEecCccHHHHHHHHH
Confidence            5     56789999999999988754   369999999999998788999999999999999999999999999999999


Q ss_pred             hhc-----CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684         163 EWR-----ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE  223 (226)
Q Consensus       163 ~~~-----~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~  223 (226)
                      .|+     ++|+.+||++++++||+.+.+||..++++++|++|++|++  ++.+.+++|+.+..++
T Consensus       158 ~~~~~~~~~~ms~eeA~~l~~~al~~~~~rD~~sg~~i~i~~itkd~g--~~~~~~~~ie~~~~~~  221 (233)
T d1ryp2_         158 VVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG--LTFKKNLQVENMKWDF  221 (233)
T ss_dssp             TCCSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE--EEEEEEEECCSCCCGG
T ss_pred             HHhhcccccccCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCCC--EEECChhcchhhhhhH
Confidence            997     7899999999999999999999999999999999999862  4578999998764433

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-44  Score=294.90  Aligned_cols=182  Identities=30%  Similarity=0.532  Sum_probs=177.6

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|+++|+|+++|..+|++.+.++++.+++.|+    +.++.++++
T Consensus         1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~----~~~~~~~~v   76 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHS----LYTSREPRV   76 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHTSCCCH
T ss_pred             CeEEEEEECCEEEEEECCCcccCceeecCCcccEEEEcCCEEEEecccchHHHHHHHHHHHHHHHhh----hhhCCCCcH
Confidence            7999999999999999999999999999999999999999999999999999999999999999999    889999999


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI  177 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la  177 (226)
                      ..+++++++.++++++|+++++++||+|+ +||+||.+||.|++.+++++|+|+|+++++++|++.|+++||++||++++
T Consensus        77 ~~~a~~l~~~~~~~~~p~~~~~l~aG~d~-~g~~Ly~id~~G~~~~~~~~a~Gsg~~~a~~~Le~~~k~~ms~eea~~l~  155 (222)
T d1rypi_          77 VSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA  155 (222)
T ss_dssp             HHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccceeEEEEEEcC-CCcEEEEEecCcceEEeeEEEECCCcHHHHHHHHhhccCCCCHHHHHHHH
Confidence            99999999999999999999999999998 79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684         178 KMGLSLAMARDYASGGLINIGVLENGK  204 (226)
Q Consensus       178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g  204 (226)
                      ++||+.+.++|..++++++|+++++++
T Consensus       156 ~~al~~a~~~D~~sg~~i~i~vi~~~~  182 (222)
T d1rypi_         156 SDAIQAGIWNDLGSGSNVDVCVMEIGK  182 (222)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred             HHHHHHHhcccCCCCCcEEEEEEEcCC
Confidence            999999999999999999999999875

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.8e-44  Score=286.96  Aligned_cols=194  Identities=19%  Similarity=0.317  Sum_probs=182.9

Q ss_pred             ccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684          14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE   93 (226)
Q Consensus        14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   93 (226)
                      ..+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+    +.++.
T Consensus         4 ~~nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~----~~~~~   79 (204)
T d1iruj_           4 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYE----LKEGR   79 (204)
T ss_dssp             TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHH----HHSSS
T ss_pred             eeCCceEEEEEECCEEEEEECCCcccCCeeEcCcccEEEEeCCCeEEEeccCchHHHHHHHHHHHhhhhhh----hhccc
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999    99999


Q ss_pred             CCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCC-CeEEEEECCCCcee-eeeeEEecCChHHHHHHHhhhhcCCCCH
Q psy8684          94 PPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVK-GGQVYALPASGVLT-RQNCAVGGSGSSYILGYVDKEWRANMKK  170 (226)
Q Consensus        94 ~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~-~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~~~Le~~~~~~~s~  170 (226)
                      +++++.+++++++++|.++ +||++++|+||||+++ +|.+|.+|+.|... +.+++++|+|+++++++|++.|+++|+.
T Consensus        80 ~~~~~~~a~~l~~~~~~~~~~p~~~~~lvaG~D~~~~~~~~~~~d~~g~~~~~~~~~~~G~g~~~~~~~l~~~~~~~ms~  159 (204)
T d1iruj_          80 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP  159 (204)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred             ccchHHHHHHHHHHHHHhhhccceeEEEEEEEcCCCCceEEEEecCCCceeeecceEEechhHHHHHHHHHhccccCCCH
Confidence            9999999999999999875 5999999999999743 68899999999865 5678999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeC
Q psy8684         171 QECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT  212 (226)
Q Consensus       171 ~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~  212 (226)
                      +||++++++||+.+.++|..++++++|++|+++| ++++.++
T Consensus       160 ~ea~~l~~~al~~a~~rd~~sg~~~~v~ii~k~g-i~~~~~~  200 (204)
T d1iruj_         160 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK-ITTRTLK  200 (204)
T ss_dssp             HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB-EEEEEBC
T ss_pred             HHHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCC-EEEEEEe
Confidence            9999999999999999999999999999999999 8877664

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-44  Score=297.69  Aligned_cols=208  Identities=17%  Similarity=0.185  Sum_probs=188.3

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+|+++|+|+|||+++||||||+|+|.+++..+ .+..+||++|+++++|+++|..+|++.++++++.+++.|+   
T Consensus        22 ya-~kav~~G~t~igik~~dgVvlaad~~~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~---   96 (244)
T d1rypg_          22 YA-VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK---   96 (244)
T ss_dssp             HH-HHHHHTSCCEEEEEETTEEEEEEEEECCCTTBC-TTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHHcCCCEEEEEeCCEEEEEEecccCCCCcc-ccccceEEEccCceEEEEccchhhHHHHHHHHHHHHHHHH---
Confidence            55 899999999999999999999999999997554 5667899999999999999999999999999999999999   


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684          88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK  162 (226)
Q Consensus        88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~  162 (226)
                       +.++++++++.+++.+++++|.++     |||++++|+||||+ +||+||.+||+|++.+++++|+|+|+..++++||+
T Consensus        97 -~~~~~~~~~~~la~~~~~~~~~~t~~~~~RP~~~~~iiaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~~~~~Lek  174 (244)
T d1rypg_          97 -KLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK  174 (244)
T ss_dssp             -HHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred             -HhcCCCCCHHHHHHHHHHHHHHhhcccccCCceEEEEEEEEeC-CCCEEEEEcCCccEEecCeEecCCccHHHHHHHHH
Confidence             999999999999999999998774     59999999999998 79999999999999999999999999999999996


Q ss_pred             ---hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-CeEEEEeChhhHhhHhhc
Q psy8684         163 ---EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK-PMEKLVFTQEEVQHFFNH  222 (226)
Q Consensus       163 ---~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g-~~~~~~l~~~ei~~~~~~  222 (226)
                         .|+++||++||++++++||..+.+++..++.+++|.+++.++ ...++.++.++++++++.
T Consensus       175 ~~~~~~~~mt~eeai~la~~~L~~~~~~~~~~~~~iev~ii~~~~~~~~~~~~~~e~~~~~~~~  238 (244)
T d1rypg_         175 LVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDF  238 (244)
T ss_dssp             HHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHH
T ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEEEcCCCeEEECCHHHHHHHHHH
Confidence               689999999999999999999998888888889999997521 123566777777877653

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-43  Score=287.91  Aligned_cols=192  Identities=22%  Similarity=0.326  Sum_probs=180.4

Q ss_pred             cCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC-C
Q psy8684          15 TCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN-E   93 (226)
Q Consensus        15 ~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~-~   93 (226)
                      ++|||+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+    +.++ .
T Consensus         7 ~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~   82 (222)
T d1ryp1_           7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYH----FDHNDK   82 (222)
T ss_dssp             CCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEECSTTCEEEEEESHHHHHHHHHHHHHHHHHHH----HHTTTC
T ss_pred             CCCcEEEEEEECCEEEEEECCCcccCCEeccCCcceEEEecCCEEEEeccChHHHHHHHHHHHHHhhhhh----hhcCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999998    7765 5


Q ss_pred             CCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc-------
Q psy8684          94 PPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-------  165 (226)
Q Consensus        94 ~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~-------  165 (226)
                      .+++..++++++..++..+ +||+++++++|+|++++|+||.+||+|++.+++++|+|+|+++++++||+.|+       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~~~  162 (222)
T d1ryp1_          83 KLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEP  162 (222)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCT
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhheeeeeEEEEeCCCCeEEEEECCCcEEEEeceEEEcccHHHHHHHHHHhhccccccCc
Confidence            6889999999999888764 69999999999999778999999999999999999999999999999999987       


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684         166 ----------ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF  211 (226)
Q Consensus       166 ----------~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l  211 (226)
                                ++||.+||++++.+||..+.++|..+++.++|++|++|| +.++.+
T Consensus       163 ~~~~~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~v~v~iitkdG-v~~~~~  217 (222)
T d1ryp1_         163 GTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG-VRKEFY  217 (222)
T ss_dssp             TSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEE
T ss_pred             ccchhhhcccccccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEeCCC-EEEEEE
Confidence                      679999999999999999999999999999999999999 865543

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-43  Score=282.59  Aligned_cols=192  Identities=16%  Similarity=0.230  Sum_probs=180.3

Q ss_pred             cCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCC
Q psy8684          15 TCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEP   94 (226)
Q Consensus        15 ~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   94 (226)
                      .+|+|+|||+++||||||+|+|.+.+.++..++.+||+++ ++++++++|.++|++.+.++++.+++.|+    +.++.+
T Consensus         6 ~nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~Ki~~i-~~i~~~~~G~~~D~~~l~~~~~~~~~~~~----~~~~~~   80 (204)
T d1rypj_           6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMFRYKTNLYK----LKEERA   80 (204)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEE-TTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHSSC
T ss_pred             cCCeEEEEEEECCEEEEEEcCCcccCCEeecCcccEEEEc-CCEEEEecCcchHHHHHHHHHHHHHHHHH----HhcCCC
Confidence            4799999999999999999999999999999999999999 59999999999999999999999999999    999999


Q ss_pred             CCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCC-CCeEEEEECCCCceeee-eeEEecCChHHHHHHHhhhhcCCCCHH
Q psy8684          95 PLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTV-KGGQVYALPASGVLTRQ-NCAVGGSGSSYILGYVDKEWRANMKKQ  171 (226)
Q Consensus        95 ~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~-~~p~ly~id~~G~~~~~-~~~a~Gsg~~~~~~~Le~~~~~~~s~~  171 (226)
                      ++++.+++++++.+|.++ +||+++++++|||+. +.|+||++||+|++.++ .++++|+|+++++++|++.|+++||++
T Consensus        81 ~~~~~la~~l~~~l~~~~~~p~~v~~li~G~d~~~g~~~L~~~D~~G~~~~~~~~~~~G~g~~~a~~~l~~~~~~~ms~~  160 (204)
T d1rypj_          81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE  160 (204)
T ss_dssp             CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred             CcchHHHHHHHHHHHhhcccceeeeEEEEEEecCCCcceEEEeCCCCccccccCcEEeecchHHHHHHHHhccccCCCHH
Confidence            999999999999999875 499999999999964 45999999999998765 589999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeC
Q psy8684         172 ECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT  212 (226)
Q Consensus       172 eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~  212 (226)
                      ||++++++||..+.++|..++++++|++|++|| ++++.++
T Consensus       161 ea~~l~~~al~~a~~~d~~sg~~~~v~ii~kdg-~~~~~~~  200 (204)
T d1rypj_         161 DLFETISQALLNAADRDALSGWGAVVYIIKKDE-VVKRYLK  200 (204)
T ss_dssp             HHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC-EEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhcCccCCeEEEEEEECCc-eEEEEec
Confidence            999999999999999999999999999999999 8776553

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-43  Score=287.93  Aligned_cols=201  Identities=13%  Similarity=0.171  Sum_probs=184.8

Q ss_pred             CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684          11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE   90 (226)
Q Consensus        11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   90 (226)
                      ++++.+|||+|||+++||||||+|+|.+.+.++..++.+||++|+++++++++|..+|++.+.++++.++..++.   ..
T Consensus         2 ~~~~~~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~---~~   78 (217)
T d1iru2_           2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEEL---LG   78 (217)
T ss_dssp             CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHH---HC
T ss_pred             CCCcCcccEEEEEEECCEEEEEEcCCcccCCeeecCCcceEEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhhh---hc
Confidence            678899999999999999999999999999999999999999999999999999999999999999999887761   45


Q ss_pred             cCCCCCHHHHHHHHHHHHHhc---cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc--
Q psy8684          91 MNEPPLVYRAANLFQKIFRSN---EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR--  165 (226)
Q Consensus        91 ~~~~~~~~~~a~~l~~~~~~~---~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~--  165 (226)
                      ++.+++++.+++++++.++.+   .+|+++++|++|+|+ ++|+||.+||+|++.+++++|+|+|+.+++++|++.|+  
T Consensus        79 ~~~~~~v~~~a~~l~~~~y~~~~~~~p~~~~~li~G~d~-~~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~  157 (217)
T d1iru2_          79 DGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQ  157 (217)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhccccCcccceEEEEEEcC-CCcEEEEEecCceeEeeeEEeccCcHHHHHHHHHHHhccc
Confidence            678999999999999988755   359999999999997 78999999999999999999999999999999999765  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhh
Q psy8684         166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQH  218 (226)
Q Consensus       166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~  218 (226)
                      ++||.+||++++++||+.+.++|..++++++|++|+++| ++  .+.|++++.
T Consensus       158 ~~lt~~ea~~l~~~al~~a~~rd~~sg~~i~i~vi~~~G-~~--~~~~~~~~~  207 (217)
T d1iru2_         158 PVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-VE--IEGPLSTET  207 (217)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EE--EEEEECCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEeCCC-EE--EcCCeeccc
Confidence            899999999999999999999999999999999999999 64  456666654

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.4e-43  Score=290.28  Aligned_cols=202  Identities=15%  Similarity=0.242  Sum_probs=174.4

Q ss_pred             CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684           8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG   87 (226)
Q Consensus         8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   87 (226)
                      |+ .+|+++|+|+|||+++||||||+|+|.++        .+||++|++||+|+++|..+|++.++++++.+++.|+   
T Consensus        11 yA-~~av~~GtT~vgi~~~~GVvlaad~r~~s--------~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~---   78 (227)
T d1q5qa_          11 LA-RKGIARGRSVVVLTFRDGVLFVAENPSTA--------LHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRG---   78 (227)
T ss_dssp             HH-HHHHHTSCCEEEEECSSEEEEEECCSCSS--------SCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH---
T ss_pred             HH-HHHHhcCCCEEEEEECCEEEEEEccCCCC--------cceEEEecCceEEEecCchHHHHHHHHHHHHHHHHHH---
Confidence            45 78999999999999999999999998654        6899999999999999999999999999999999999   


Q ss_pred             ccccC-CCCCHHHHHHHHHHHHH----hccCCceeEEEEEEEeCC---CCeEEEEECCCCceee-eeeEEecCChHHHHH
Q psy8684          88 YREMN-EPPLVYRAANLFQKIFR----SNEGSFKAAIIIAGWDTV---KGGQVYALPASGVLTR-QNCAVGGSGSSYILG  158 (226)
Q Consensus        88 ~~~~~-~~~~~~~~a~~l~~~~~----~~~~p~~v~~liaG~d~~---~~p~ly~id~~G~~~~-~~~~a~Gsg~~~~~~  158 (226)
                       ++++ .+++++.+++.++++++    ...|||++++|+||||..   .+|+||.+||+|++.+ ..+++.|++++.+.+
T Consensus        79 -~~~~~~~~~~~~la~~~~~~~~~~~~~~~rP~gvs~lvaG~D~~g~~~~p~Ly~vDpsG~~~~~~~~~~~g~~s~~~~~  157 (227)
T d1q5qa_          79 -YSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIAT  157 (227)
T ss_dssp             -HHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHH
T ss_pred             -HHhCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEEecCCCCCCCEEEEEccccceeeecccccCCCchHHHHH
Confidence             8888 46899888888887643    335799999999999863   5799999999999876 446777888999999


Q ss_pred             HHhhhhcCCCCHHHHHHHHHHHHHHHHhcccC----CCCcEEEEEEcCCCC-eEEEEeChhhHhhHhhc
Q psy8684         159 YVDKEWRANMKKQECIDFIKMGLSLAMARDYA----SGGLINIGVLENGKP-MEKLVFTQEEVQHFFNH  222 (226)
Q Consensus       159 ~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~----~~~~i~i~vi~~~g~-~~~~~l~~~ei~~~~~~  222 (226)
                      +|++.|+++||++||+++|++||+.+.++|..    ++..+||.+++++|+ ..|+.|+++||+++|+.
T Consensus       158 ~Le~~y~~~ms~eea~~la~~aL~~a~~~d~~~~~~~~~~ievavi~k~~~~~~fr~l~~~ei~~~l~~  226 (227)
T d1q5qa_         158 AMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPA  226 (227)
T ss_dssp             HHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTSCC
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHhhcccccCCcCcceEEEEEEECCCCccceEEcCHHHHHHHhcC
Confidence            99999999999999999999999999988753    456899999999872 24789999999999875

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=3.3e-42  Score=281.11  Aligned_cols=200  Identities=19%  Similarity=0.259  Sum_probs=186.3

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.++|.++..++.+||++|+++++++++|..+|++.+.++++.+++.|+    ++++.++++
T Consensus         1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~   76 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYE----KIEGVPLTF   76 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeecCCcceEEEeCCcEEEEecccchHHHHHHHHHHHHhHHHH----HhhCCCccH
Confidence            7999999999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCceeEEEEEEEe-----CCCCeEEEEECCCCceee--eeeEEecCChHHHHHHHhhhhcC
Q psy8684          98 YRAANLFQKIFRSNE----GSFKAAIIIAGWD-----TVKGGQVYALPASGVLTR--QNCAVGGSGSSYILGYVDKEWRA  166 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~----~p~~v~~liaG~d-----~~~~p~ly~id~~G~~~~--~~~~a~Gsg~~~~~~~Le~~~~~  166 (226)
                      ..+++.+++++|.++    +|+++..+++|++     ..++|+||.+||.|++.+  .+++|+|+|+.+++++||+.|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~~~~~~~~~a~GsG~~~a~~~Le~~~~~  156 (224)
T d1q5qh_          77 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP  156 (224)
T ss_dssp             HHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHhhcccccCccceeeEEEeecccccccCCceEEEEEccCcEEEeccceeeecCccHHHHHHHHHhhcc
Confidence            999999999998774    5889999998876     346899999999999765  47899999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCCc-------EEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684         167 NMKKQECIDFIKMGLSLAMARDYASGGL-------INIGVLENGKPMEKLVFTQEEVQHFFNHEA  224 (226)
Q Consensus       167 ~~s~~eai~la~~~l~~~~~~d~~~~~~-------i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~  224 (226)
                      +||.+||++++++||..+.++|..+|++       +++++++++| +  +.++++||++++..+.
T Consensus       157 ~mt~~ea~~l~~~al~~a~~rD~~SGg~~~~~~~~~~~~~i~~~g-~--~~l~~~ei~~~~~~~~  218 (224)
T d1q5qh_         157 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-A--VHVSEETTSELARRIV  218 (224)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-E--EECCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhhccccCCcccccccceEEEEEeCCc-E--EEcCHHHHHHHHHHHH
Confidence            9999999999999999999999999875       8999999999 4  5799999999988764

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-41  Score=274.58  Aligned_cols=192  Identities=20%  Similarity=0.277  Sum_probs=182.6

Q ss_pred             cCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCC
Q psy8684          15 TCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEP   94 (226)
Q Consensus        15 ~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   94 (226)
                      .+|||+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+    ..++.+
T Consensus         7 ~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~----~~~~~~   82 (213)
T d1iru1_           7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYK----HSNNKA   82 (213)
T ss_dssp             CCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHSSC
T ss_pred             CCCcEEEEEEECCEEEEEECCccccCceeeccccCEEEEcCCCEEEEecCccchHHHHHHHHHHHHHHHH----HhhCCc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999    999999


Q ss_pred             CCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc--------
Q psy8684          95 PLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR--------  165 (226)
Q Consensus        95 ~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~--------  165 (226)
                      +++..+++.+++.+|.++ .|++++.+++|+|..++|.+|.+||.|++.+.+++++|+|+.+++++|++.|.        
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~l~~~~~~~~~~~~~  162 (213)
T d1iru1_          83 MTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVE  162 (213)
T ss_dssp             CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCC
T ss_pred             hhHHHHHHHHHHHHHHHHhhhcccccceEEEecCCCcEEEecCCcceeeecCeeeecCccHHHHHHHHHhhcccchhccc
Confidence            999999999999999886 49999999999999888999999999999999999999999999999998764        


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684         166 -ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF  211 (226)
Q Consensus       166 -~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l  211 (226)
                       ++||++||++++++||..+.++|..++++++|++|++|| ++++.+
T Consensus       163 ~~~~s~~ea~~~~~~~l~~~~~~d~~sg~~~~v~~i~k~G-~~~~~~  208 (213)
T d1iru1_         163 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IREETV  208 (213)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-EEEEEE
Confidence             689999999999999999999999999999999999999 765543

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-41  Score=268.76  Aligned_cols=193  Identities=15%  Similarity=0.228  Sum_probs=181.2

Q ss_pred             CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      .|++|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+    .+++.+++
T Consensus         1 Mt~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~~G~~aD~~~l~~~~~~~~~~~~----~~~~~~~~   76 (199)
T d1iruk_           1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYK----MRNGYELS   76 (199)
T ss_dssp             CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHH----HHHSSCCC
T ss_pred             CeEEEEEEECCEEEEEECCCccCCCeeecCCcceEEEecCcEEEEecccchHHHHHHHHHHHHhhhhh----hhcCCcCc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHHHhc---cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHH
Q psy8684          97 VYRAANLFQKIFRSN---EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC  173 (226)
Q Consensus        97 ~~~~a~~l~~~~~~~---~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~ea  173 (226)
                      ++.+++.+++.++.+   .+|++++++++|+|...+|+||.+||.|.+.+.+++++|+|+++++++|++.|+++|+++||
T Consensus        77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~aG~d~~~~~~l~~~~~~g~~~~~~~~a~G~gs~~a~~~l~~~~~~~~~~~ea  156 (199)
T d1iruk_          77 PTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERA  156 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCCcceeeeecceeccCCceEEeecccceEEeeeeeeecccchhhhHHHHHhccCCCCHHHH
Confidence            999999999887754   45999999999999977899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhH
Q psy8684         174 IDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEV  216 (226)
Q Consensus       174 i~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei  216 (226)
                      ++++++||+.+.++|..++++++|++|+++| +.  .+++..+
T Consensus       157 ~~l~~~al~~~~~~d~~sg~~~~v~vv~~~g-~~--~~~~~~~  196 (199)
T d1iruk_         157 VELLRKCLEELQKRFILNLPTFSVRIIDKNG-IH--DLDNISF  196 (199)
T ss_dssp             HHHHHHHHHHHHHTBCBCCCCEEEEEEETTE-EE--CCCCBCC
T ss_pred             HHHHHHHHHHHHHhcCCcCCceEEEEEcCCC-eE--EcCCccC
Confidence            9999999999999999999999999999999 63  4555443

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=2.1e-29  Score=198.16  Aligned_cols=176  Identities=16%  Similarity=0.118  Sum_probs=131.3

Q ss_pred             cCCceEEEEEeCCeEEEEEeCCccCCceeeec-ccCceEeecCe-eEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684          15 TCGTTTIACEYENGVMMGADTRTTLGTYVCNR-EAEKLTKISDN-IYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN   92 (226)
Q Consensus        15 ~~gttvigi~~~dgVvlaad~r~t~~~~~~~~-~~~Ki~~i~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   92 (226)
                      .+|||+|||+++||||||+|+|.|.|+++..+ ..+|++.++++ ++++.+|...|.+.+.+.++.+.+.++    ....
T Consensus         3 ~~GTTivai~~~dGVvlAaDtR~S~G~~i~~~~~~~ki~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~   78 (180)
T d2z3ba1           3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN----GNLK   78 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT----TCHH
T ss_pred             CCCeEEEEEEECCEEEEEECCcccCCceeEecccceEEEEecccceecccchHHHHHHHHHHHHHHHHHhhc----cccc
Confidence            57999999999999999999999998877665 57899999775 888889999999999999888776665    3222


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHH
Q psy8684          93 EPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQE  172 (226)
Q Consensus        93 ~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~e  172 (226)
                      ........+.......+.++.++.......|++. .++.++..+      ..++.|+|||+.+|+++|++.|+++|+.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~a~GSGs~~A~g~l~~~~~~~~s~~e  151 (180)
T d2z3ba1          79 RAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLV-SGTGEVIEP------DDGILAIGSGGNYALAAGRALKKHAGESMS  151 (180)
T ss_dssp             HHHHHHHHHHHHCTTGGGCCCCEEEECSSCEEEE-CTTCCEECC------SSSEEEESTTHHHHHHHHHHHHHHHGGGCC
T ss_pred             hhHHHHHHHHhHHHHHHHhhcceeeeeccccccc-cCCceeecc------cccEEEEcCchHHHHHHHHHHhhcCCCccC
Confidence            2211111111111122222234444434444444 344444444      445889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q psy8684         173 CIDFIKMGLSLAMARDYASGGLINIGVLE  201 (226)
Q Consensus       173 ai~la~~~l~~~~~~d~~~~~~i~i~vi~  201 (226)
                      |++++++||+.|.++|..+++.+++.+|.
T Consensus       152 A~~l~~~Al~~A~e~dvyT~~~~~~~~i~  180 (180)
T d2z3ba1         152 ASEIARAALETAGEICVYTNDQIILEELE  180 (180)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             HHHHHHHHHHHHHhhcEEcCCcEEEEEeC
Confidence            99999999999999999999999988773

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=3.1e-27  Score=183.94  Aligned_cols=170  Identities=15%  Similarity=0.120  Sum_probs=137.2

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV   97 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      ||+|||+++||||||+|+|.|.|+++.+++.+||++|+++++++.+|..+|.+.+...+..+...+.    .  +.   .
T Consensus         1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~Ki~~i~~~~~~~~~g~~ad~~~~~~~~~~~~~~~~----~--~~---~   71 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREW----G--GN---L   71 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHT----T--TC---H
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEecCCcEEEEEeechhhHHHHHHHHHHHHHHh----h--cc---c
Confidence            7999999999999999999999999999999999999999999999999999988887766655544    2  11   1


Q ss_pred             HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc-CCCCHHHHHHH
Q psy8684          98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-ANMKKQECIDF  176 (226)
Q Consensus        98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~-~~~s~~eai~l  176 (226)
                      ..........+.....++....++.+.+. ++|+++..|+.|...+.++.|+|||+.+|+++|+..|+ ++++   |.++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~l~~~~~~~~~~---a~el  147 (171)
T d1m4ya_          72 TKAAVELAKDWRTDRVLRRLEALLLVADK-ENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLS---AREI  147 (171)
T ss_dssp             HHHHHHHHHHHHHCTTGGGCCCEEEEECS-SCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCC---HHHH
T ss_pred             hhhHHHHHHHHHHhhhhcccccccceecC-CcceEEecCCceeeecCCEEEEcchHHHHHHHHHhhccCCCCC---HHHH
Confidence            22222233333333444444455555665 78999999999999999999999999999999998765 5675   7779


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                      +++||..|.++|..++++++|..|
T Consensus       148 ~~~Ai~~A~e~dvyTg~~~~i~~~  171 (171)
T d1m4ya_         148 VEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             HHHHHHHHHhhceEcCCcEEEEEC
Confidence            999999999999999999988643

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=99.94  E-value=7e-27  Score=182.32  Aligned_cols=171  Identities=16%  Similarity=0.192  Sum_probs=131.5

Q ss_pred             ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCe-eEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684          18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDN-IYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL   96 (226)
Q Consensus        18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (226)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|+++ ++++.+|...+.+.+.+..+.+.+.++          ..
T Consensus         1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~Ki~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~   70 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQ----------GH   70 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTT----------TC
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeEcCCcceEEEecCCcEEEEeeehhHhHHHHHHHHHHHHHhhc----------Cc
Confidence            7999999999999999999999999999999999999887 555666666666666555444333332          22


Q ss_pred             HHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684          97 VYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF  176 (226)
Q Consensus        97 ~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l  176 (226)
                      ....+..+...+...+..+.....+.+.+.++++.++..++.|.+.+.++.|+|||+.+|++.|+..|+  ++.+||.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~~~l~~~~~--~~~~~A~el  148 (173)
T d1g3ka_          71 LLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVE--NTELSAHEI  148 (173)
T ss_dssp             HHHHHHHHHHHHHHSTTGGGCCCEEEEECSSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHH--HCCCCHHHH
T ss_pred             chhHHHHHHHHHHHhhhhcccccccccccCCCcceecccCceEEecCCCEEEecchHHHHHHHHHHhhh--cCCCCHHHH
Confidence            233333444444434433333344456666688999999999999999999999999999999998875  344578899


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEE
Q psy8684         177 IKMGLSLAMARDYASGGLINIGVL  200 (226)
Q Consensus       177 a~~~l~~~~~~d~~~~~~i~i~vi  200 (226)
                      +++||..|.++|..++++++|..|
T Consensus       149 a~~Ai~~Aae~dvyTgd~~~i~~~  172 (173)
T d1g3ka_         149 VEKSLRIAGDICVFTNTNFTIEEL  172 (173)
T ss_dssp             HHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             HHHHHHHHHhhcEEcCCcEEEEEC
Confidence            999999999999999999998765