Psyllid ID: psy8697
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | 2.2.26 [Sep-21-2011] | |||||||
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.746 | 0.750 | 0.287 | 2e-43 | |
| B4MYA4 | 872 | Facilitated trehalose tra | N/A | N/A | 0.736 | 0.428 | 0.274 | 3e-38 | |
| Q291H8 | 868 | Facilitated trehalose tra | yes | N/A | 0.738 | 0.432 | 0.282 | 8e-38 | |
| B4GAP7 | 869 | Facilitated trehalose tra | N/A | N/A | 0.738 | 0.431 | 0.282 | 8e-38 | |
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.751 | 0.738 | 0.259 | 9e-38 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.734 | 0.462 | 0.260 | 1e-37 | |
| B4LPX5 | 911 | Facilitated trehalose tra | N/A | N/A | 0.738 | 0.411 | 0.275 | 1e-37 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.738 | 0.744 | 0.259 | 2e-37 | |
| B3MG58 | 866 | Facilitated trehalose tra | N/A | N/A | 0.738 | 0.433 | 0.277 | 5e-37 | |
| B4KR05 | 863 | Facilitated trehalose tra | N/A | N/A | 0.738 | 0.434 | 0.277 | 9e-37 |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 219/439 (49%), Gaps = 60/439 (13%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV 128
VG V GP+++Y+GRK +++ VP+ I +L +A+ N+ +++ ++ G+ G+ ++
Sbjct: 103 VGGIVGGPLIEYLGRKKTIMGTAVPFTIGWML--IANAINVVMVFAGRVICGVCVGIVSL 160
Query: 129 AM-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVL 187
A VY+ E R A+ L + F + GILL ++ YLDW +L++ F A + + +L
Sbjct: 161 AFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLAF-FGAAIPVPFFLL 219
Query: 188 ICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRN 247
+ PE+P W ++ R+ +A KSL++L EKE R L +T D T
Sbjct: 220 MILTPETPRWYVS-------KARVQEARKSLRWLRGKNVNIEKEMRDLTISQTESDRTGG 272
Query: 248 KKALWRQILTTRECYKPLILLVI-LFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVF 306
++Q+ + R Y P +++ + L QQ TG+ VIFYA +F+ G+ +DE+ A +
Sbjct: 273 NA--FKQLFSKR--YLPAVMISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLASII 328
Query: 307 LGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYL 366
+G++ F + + T+L GRK LL +S+ + + + L + +K
Sbjct: 329 IGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLK-------------- 374
Query: 367 VTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVI 426
N + V +A+ WL L +++YV ++G I
Sbjct: 375 --------------QNHIDV--TAYG-------------WLPLACLVIYVLGFSIGFGPI 405
Query: 427 PWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVI-GTFNVFGLVSFTLV 485
PW M+ E+LPS RG + L + + C F + K F I + + GT +F ++ +
Sbjct: 406 PWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIGGL 465
Query: 486 GFVYFYLPETKGKTFVEIE 504
FV F++PETKGK+ EIE
Sbjct: 466 LFVIFFVPETKGKSLEEIE 484
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|B4MYA4|TRET1_DROWI Facilitated trehalose transporter Tret1 OS=Drosophila willistoni GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/434 (27%), Positives = 208/434 (47%), Gaps = 60/434 (13%)
Query: 76 PIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAM-VYVS 134
P ++Y+GR+ +++ VP+I+SSLL A NI ++ L + AG G++++++ VY+
Sbjct: 473 PFIEYLGRRNTILTTAVPFIVSSLLIACA--VNITMVLLGRFLAGFCVGIASLSLPVYLG 530
Query: 135 EICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLICFAPES 194
E R + L + F + GILL + Y+DW L++ AL + L+L+ PE+
Sbjct: 531 ETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALP-VPFLILMFLIPET 589
Query: 195 PHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQ 254
P W ++ R +A K+L +L E E + L + + D + + +
Sbjct: 590 PRWYVSRGREE-------RARKALSWLRGKEADVEPELKGLLRSQADADRSATQNTMLE- 641
Query: 255 ILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGM 314
L R KPL + + L QQ +G+ VIFY +Q+FK+ G+ ID + + +GI+ F
Sbjct: 642 -LLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVQIFKDAGSTIDGNVCTIIVGIVNFMA 700
Query: 315 SVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMR 374
+ + +L GRK LL VS + ++ +L F C ++
Sbjct: 701 TFIGIILIDRAGRKILLYVSNVAMIITLFVLGG-------FFYCKDKAG----------- 742
Query: 375 LDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434
+D S++ WL L ++Y+ ++G IPW M+ E+
Sbjct: 743 ----------------------IDVSNVG--WLPLSCFVVYILGFSLGFGPIPWLMMGEI 778
Query: 435 LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFN---VFGLVSFTLVGFVYFY 491
LP+ RG + + ++ + C F + K F + VIG++ +FG + F + FV Y
Sbjct: 779 LPAKIRGSAASVATAFNWTCTFVVTKTFQDML--DVIGSYGAFWLFGAICFIGLFFVIIY 836
Query: 492 LPETKGKTFVEIEK 505
+PET+GKT +IE+
Sbjct: 837 VPETQGKTLEDIER 850
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila willistoni (taxid: 7260) |
| >sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 202/432 (46%), Gaps = 57/432 (13%)
Query: 76 PIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAM-VYVS 134
P ++Y+GR+ +++ +P+I+SSLL A N+ ++ + AG G++++++ VY+
Sbjct: 470 PFIEYLGRRNTILATAIPFIVSSLLIACA--VNVAMVLAGRFLAGFCVGIASLSLPVYLG 527
Query: 135 EICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLICFAPES 194
E R + L + F + GILL + Y+DW L++ AL + L+L+ PE+
Sbjct: 528 ETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALP-VPFLILMFLIPET 586
Query: 195 PHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQ 254
P W ++ R KA K+L +L E E + L +R++ D R
Sbjct: 587 PRWFVSRGREE-------KARKALSWLRGKEADVEPELKGL--MRSQADADRQATQNKMM 637
Query: 255 ILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGM 314
L R KPL + + L QQ +G+ VIFY + +FK+ G+ ID + + +GI+ F
Sbjct: 638 ELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVGIVNFMA 697
Query: 315 SVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMR 374
+ + T+L GRK LL VS + ++ +L KS
Sbjct: 698 TFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKS--------------------- 736
Query: 375 LDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434
H + D S L WL L ++Y+ ++G IPW M+ E+
Sbjct: 737 ------HGQ--------------DVSQLG--WLPLSCFVIYILGFSLGFGPIPWLMMGEI 774
Query: 435 LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH-SSVIGTFNVFGLVSFTLVGFVYFYLP 493
LPS RG + + ++ + C F + K F I G F +FG + F + FV Y+P
Sbjct: 775 LPSKIRGSAASVATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVP 834
Query: 494 ETKGKTFVEIEK 505
ET+GKT +IE+
Sbjct: 835 ETQGKTLEDIER 846
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 202/432 (46%), Gaps = 57/432 (13%)
Query: 76 PIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAM-VYVS 134
P ++Y+GR+ +++ +P+I+SSLL A N+ ++ + AG G++++++ VY+
Sbjct: 471 PFIEYLGRRNTILATAIPFIVSSLLIACA--VNVAMVLAGRFLAGFCVGIASLSLPVYLG 528
Query: 135 EICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLICFAPES 194
E R + L + F + GILL + Y+DW L++ AL + L+L+ PE+
Sbjct: 529 ETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALP-VPFLILMFLIPET 587
Query: 195 PHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQ 254
P W ++ R KA K+L +L E E + L +R++ D R
Sbjct: 588 PRWFVSRGREE-------KARKALSWLRGKEADVEPELKGL--MRSQADADRQATQNKMM 638
Query: 255 ILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGM 314
L R KPL + + L QQ +G+ VIFY + +FK+ G+ ID + + +GI+ F
Sbjct: 639 ELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVGIVNFMA 698
Query: 315 SVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMR 374
+ + T+L GRK LL VS + ++ +L KS
Sbjct: 699 TFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKS--------------------- 737
Query: 375 LDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434
H + D S L WL L ++Y+ ++G IPW M+ E+
Sbjct: 738 ------HGQ--------------DVSQLG--WLPLSCFVIYILGFSLGFGPIPWLMMGEI 775
Query: 435 LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH-SSVIGTFNVFGLVSFTLVGFVYFYLP 493
LPS RG + + ++ + C F + K F I G F +FG + F + FV Y+P
Sbjct: 776 LPSKIRGSAASVATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVP 835
Query: 494 ETKGKTFVEIEK 505
ET+GKT +IE+
Sbjct: 836 ETQGKTLEDIER 847
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila persimilis (taxid: 7234) |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 207/439 (47%), Gaps = 57/439 (12%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV 128
VG + GP+++Y+GRK +++ P+IIS LL A ++ ++ + + +G G++++
Sbjct: 112 VGGILGGPLIEYLGRKNTILATATPFIISWLLIACAT--HVAMVLVGRALSGFSVGVASL 169
Query: 129 AM-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVL 187
++ VY+ E R + L + F + GILL + Y+DW L++ A + + L+L
Sbjct: 170 SLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAF-LGATLPVPFLIL 228
Query: 188 ICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRN 247
+ PE+P W ++ R +A K+L++L + E + + +++ D R+
Sbjct: 229 MFLIPETPRWYVSRGRDD-------RARKALQWLRGKKADVDPELKGI--IKSHQDAERH 279
Query: 248 KKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFL 307
L + KPL++ + L QQ +G+ VIFY +Q+F++ G+ IDE+ + +
Sbjct: 280 ASQSAMLDLLKKTNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIV 339
Query: 308 GIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLV 367
G++ F + + T+L GRK LL +S + ++ + L +K
Sbjct: 340 GVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTLGGFFYVK--------------- 384
Query: 368 TPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIP 427
N V H WL L +++V ++G IP
Sbjct: 385 ------------------------NNGGDVSHIG----WLPLASFVIFVLGFSLGFGPIP 416
Query: 428 WTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVG 486
W M+ E+LP RG + + ++ + C F + K F I S G F +FG V +
Sbjct: 417 WLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLV 476
Query: 487 FVYFYLPETKGKTFVEIEK 505
FV Y+PET+GK+ +IE+
Sbjct: 477 FVIMYVPETQGKSLEDIER 495
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 207/430 (48%), Gaps = 57/430 (13%)
Query: 78 MDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAM-VYVSEI 136
++Y+GRK +++ P+IIS LL A ++ ++ + + +G G++++++ VY+ E
Sbjct: 410 IEYLGRKNTILATATPFIISWLLIACAT--HVAMVLVGRALSGFSVGVASLSLPVYLGET 467
Query: 137 CHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLICFAPESPH 196
R + L + F + GILL + Y+DW L++ AL I L+L+ PE+P
Sbjct: 468 VQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALP-IPFLLLMFLIPETPR 526
Query: 197 WLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQIL 256
W ++ R +A K+L++L + E + + +++ D R+ L
Sbjct: 527 WYVSRGRDD-------RARKALQWLRGKKADVDPELKGI--IKSHQDAERHASQSAMLDL 577
Query: 257 TTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGMSV 316
+ KPL++ + L QQ +G+ VIFY +Q+F++ G+ IDE+ + +G++ F +
Sbjct: 578 MKKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATF 637
Query: 317 VTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLD 376
+ T+L GRK LL +S + ++ + L +K++ + +
Sbjct: 638 IATMLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDVS----------------- 680
Query: 377 HSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLP 436
QV WL L ++YV ++G IPW M+ E+LP
Sbjct: 681 --------QV------------------GWLPLAAFVIYVLGFSLGFGPIPWLMMGEILP 714
Query: 437 SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPET 495
RG + + ++ + C F + K F I++ GTF +FG + + FV FY+PET
Sbjct: 715 GKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPET 774
Query: 496 KGKTFVEIEK 505
+GK+ +IE+
Sbjct: 775 QGKSLEDIER 784
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/432 (27%), Positives = 207/432 (47%), Gaps = 57/432 (13%)
Query: 76 PIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAM-VYVS 134
P ++Y+GR+ +++ VP+I+S LL A N+ ++ + AG G++++++ VY+
Sbjct: 513 PFIEYLGRRNTILATAVPFIVSWLLIACA--VNVIMVLCGRFLAGFCVGIASLSLPVYLG 570
Query: 135 EICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLICFAPES 194
E R + L + F + GILL + Y+DW L++ +L + L+L+ PE+
Sbjct: 571 ETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGASLP-VPFLILMFLIPET 629
Query: 195 PHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQ 254
P W ++ R +A K+L +L E E + L +R++ D R
Sbjct: 630 PRWYVSRGREE-------RARKALVWLRGKEADVEPELKGL--MRSQADADRQATQNKML 680
Query: 255 ILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGM 314
L R KPL + + L QQ +G+ VIFY +Q+F++ G+ ID + + +G++ F
Sbjct: 681 ELLKRSNLKPLSISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFAA 740
Query: 315 SVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMR 374
+ + T+L GRK LL VS++++ L + F C
Sbjct: 741 TFIATILIDRAGRKVLLY-------VSNVMMVLTLFVLGGFFYC---------------- 777
Query: 375 LDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434
SS +D S++ WL L ++Y+ ++G IPW M+ E+
Sbjct: 778 ------------------KSSGMDTSNVG--WLPLSCFVIYILGFSLGFGPIPWLMMGEI 817
Query: 435 LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH-SSVIGTFNVFGLVSFTLVGFVYFYLP 493
LP+ RG + + ++ + C F + K+F I G F +FG + F + FV FY+P
Sbjct: 818 LPAKIRGSAASVATAFNWSCTFVVTKSFQDMIDFMGAHGAFWMFGAICFIGLFFVIFYVP 877
Query: 494 ETKGKTFVEIEK 505
ET+GKT +IE+
Sbjct: 878 ETQGKTLEDIER 889
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila virilis (taxid: 7244) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 205/432 (47%), Gaps = 57/432 (13%)
Query: 76 PIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAM-VYVS 134
P ++Y+GRK +++ VP+I++ LL A+ +I ++ + +G G++++++ VY+
Sbjct: 106 PFIEYLGRKNTILATAVPFIVAWLLIAFAN--SIWMVLAGRALSGFCVGIASLSLPVYLG 163
Query: 135 EICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLICFAPES 194
E R + L + F + GIL+ + Y++W L++ +++ I +VL PE+
Sbjct: 164 ETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIG-SILPIPFMVLTLLIPET 222
Query: 195 PHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQ 254
P W + R +A K+L++L E E + + + + ++ A++
Sbjct: 223 PRWFVTRGREE-------RARKALQWLRGKKADVEPELKGIVKSHCEAERHASQNAIFD- 274
Query: 255 ILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGM 314
L R KPL++ + L QQ +G+ VIFY + +FK+ G+ IDE+ + +G++ FG
Sbjct: 275 -LMKRSNLKPLLIALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVVNFGA 333
Query: 315 SVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMR 374
+ TVL GRK LL +S + ++ + L + K
Sbjct: 334 TFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYK---------------------- 371
Query: 375 LDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434
+S D S++ WL L ++YV + GV IPW M+ E+
Sbjct: 372 -------------------NSGNDVSNIG--WLPLASFVIYVIGFSSGVGPIPWLMLGEI 410
Query: 435 LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLP 493
LP RG + + + + C F + K F + + G F FG++ + FV F++P
Sbjct: 411 LPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLIGLFFVIFFVP 470
Query: 494 ETKGKTFVEIEK 505
ET+GK+ EIE+
Sbjct: 471 ETQGKSLEEIER 482
|
High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 201/432 (46%), Gaps = 57/432 (13%)
Query: 76 PIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAM-VYVS 134
P ++Y+GR+ +++ VP+I+SSLL A N+ ++ + AG G++++++ VY+
Sbjct: 468 PFIEYLGRRNTILATAVPFIVSSLLIACA--VNVAMVLAGRFLAGFCVGIASLSLPVYLG 525
Query: 135 EICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLICFAPES 194
E R + L + F + GILL + Y+DW L++ AL + LVL+ PE+
Sbjct: 526 ETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALP-VPFLVLMFLIPET 584
Query: 195 PHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQ 254
P W ++ R +A K+L +L E E + L +R++ D R
Sbjct: 585 PRWFVSRGREE-------RARKALSWLRGKEADVEPELKGL--MRSQADADRQGTQNTML 635
Query: 255 ILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGM 314
L R +KPL + + L QQ +G+ VIFY + +FK+ G+ ID + + +G++ F
Sbjct: 636 ELLKRSNFKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNVCTIIVGVVNFLA 695
Query: 315 SVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMR 374
+ + T+L GRK LL VS+I + L + F C +
Sbjct: 696 TFIATLLIDRAGRKILLY-------VSNIAMIITLFVLGGFFYCKAHGPD---------- 738
Query: 375 LDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434
V H WL L ++Y+ ++G IPW M+ E+
Sbjct: 739 ----------------------VSHLG----WLPLSCFVIYILGFSLGFGPIPWLMMGEI 772
Query: 435 LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH-SSVIGTFNVFGLVSFTLVGFVYFYLP 493
LP+ RG + + ++ + C F + K F I G F +FG + F + FV Y+P
Sbjct: 773 LPAKIRGSAASVATAFNWTCTFVVTKTFQDMIDVMGAHGAFWLFGAICFIGLFFVILYVP 832
Query: 494 ETKGKTFVEIEK 505
ET+GKT +IE+
Sbjct: 833 ETQGKTLEDIER 844
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila ananassae (taxid: 7217) |
| >sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 203/432 (46%), Gaps = 57/432 (13%)
Query: 76 PIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAM-VYVS 134
P ++Y+GR+ +++ VP+IIS LL A N+ ++ + AG G++++++ VY+
Sbjct: 465 PFIEYLGRRNTILATAVPFIISWLLIACA--VNVVMVLCGRFLAGFCVGIASLSLPVYLG 522
Query: 135 EICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLICFAPES 194
E R + L + F + GILL + Y+DW L++ L + L+L+ PE+
Sbjct: 523 ETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGGTLP-VPFLILMFLIPET 581
Query: 195 PHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQ 254
P W ++ R +A K+L +L E E + L +R++ D R
Sbjct: 582 PRWYVSRGREE-------RARKALVWLRGKEADVEPELKGL--MRSQADADRQATQNTML 632
Query: 255 ILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGM 314
L R KPL + + L QQ +G+ VIFY +Q+F++ G+ ID + + +G++ F
Sbjct: 633 ELLKRSNLKPLSISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFMA 692
Query: 315 SVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMR 374
+ + TVL GRK LL VS + ++ +L KST
Sbjct: 693 TFIATVLIDRAGRKILLYVSNVAMILTLFVLGGFFYCKST-------------------- 732
Query: 375 LDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434
+TS+ WL L ++Y+ ++G IPW M+ E+
Sbjct: 733 ---------------GMDTSNV--------GWLPLSCFVVYILGFSLGFGPIPWLMMGEI 769
Query: 435 LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH-SSVIGTFNVFGLVSFTLVGFVYFYLP 493
LP+ RG + + ++ + C F + K+F I G F +FG + F + FV FY+P
Sbjct: 770 LPAKIRGSAASVATAFNWSCTFVVTKSFQDMIDVMGAHGAFWMFGAICFVGLFFVIFYVP 829
Query: 494 ETKGKTFVEIEK 505
ET+GKT +IE+
Sbjct: 830 ETQGKTLEDIER 841
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila mojavensis (taxid: 7230) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | ||||||
| 322779115 | 456 | hypothetical protein SINV_00281 [Solenop | 0.807 | 0.899 | 0.383 | 5e-72 | |
| 307207693 | 531 | Sugar transporter ERD6-like 6 [Harpegnat | 0.799 | 0.764 | 0.362 | 1e-70 | |
| 307173962 | 541 | Sugar transporter ERD6-like 4 [Camponotu | 0.801 | 0.752 | 0.378 | 2e-69 | |
| 91084895 | 493 | PREDICTED: similar to sugar transporter | 0.785 | 0.809 | 0.379 | 9e-69 | |
| 157138629 | 517 | sugar transporter [Aedes aegypti] gi|108 | 0.785 | 0.771 | 0.359 | 6e-66 | |
| 345483674 | 531 | PREDICTED: facilitated trehalose transpo | 0.795 | 0.760 | 0.341 | 3e-65 | |
| 332027984 | 476 | Solute carrier family 2, facilitated glu | 0.805 | 0.859 | 0.349 | 4e-64 | |
| 347971941 | 548 | AGAP004457-PA [Anopheles gambiae str. PE | 0.779 | 0.722 | 0.345 | 1e-63 | |
| 242025604 | 460 | conserved hypothetical protein [Pediculu | 0.779 | 0.860 | 0.361 | 2e-63 | |
| 291461589 | 530 | sugar transporter 15 [Nilaparvata lugens | 0.781 | 0.749 | 0.336 | 1e-62 |
| >gi|322779115|gb|EFZ09484.1| hypothetical protein SINV_00281 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 177/461 (38%), Positives = 257/461 (55%), Gaps = 51/461 (11%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S V IT P+GS + GP+MD GRK +L C+P +IS + I A ++ +Y +++ A
Sbjct: 28 ASLVTITLPIGSLIAGPLMDKYGRKVVCLLSCIPAVISWVSLIFAK--SLITIYAARVIA 85
Query: 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLAL 179
GI G++TV+++Y+SE+ H RP ILCLNSVF+S GIL+T L + LDWR ++ FLAL
Sbjct: 86 GIAAGLTTVSIIYISELTHPQVRPMILCLNSVFVSLGILITCCLAVMLDWRKMNIVFLAL 145
Query: 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEW-RVLCQV 238
L L F PESP+WL+ KR+ K + SLK LNR I+E+E+ R++
Sbjct: 146 ECCIFLTLY-FVPESPYWLVCFQNRMFDEKRICKIKCSLKRLNRRQTIYEEEYSRIMEIY 204
Query: 239 RTRYDETRNKKALWRQI------LTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFK 292
R K++ + T+ YKPL++L LF LQQ +G Y VIFYA+ +F+
Sbjct: 205 ENRVASDEAPKSIAESVKNYYHKFTSPIAYKPLLILFSLFLLQQLSGSYVVIFYAISVFR 264
Query: 293 EV----GTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSN 348
E+ G +E ALV LG IRF +SV+T +R +GR+ L I+S G+ +S L
Sbjct: 265 EMGGTFGKSFNEHEALVMLGTIRFIISVITVFCSRKYGRRVLCILSGIGMAISMFL---- 320
Query: 349 LLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLS 408
M + + W++E + + + ++ WL
Sbjct: 321 ----------------------SGMYMHFTMWYDE----------NGNTEETMVNQKWLL 348
Query: 409 LLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468
L F+L Y+ S+ G IVIPWT+I ELLP RG+ G+MIS Y MF ++K++PF + S
Sbjct: 349 LFFVLSYICTSSFGFIVIPWTLIGELLPVTVRGIGGGIMISLAYTMMFAVIKSYPFILKS 408
Query: 469 -SVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYFS 508
S+ G F F +S FVYF+LPET GK+F +IE +FS
Sbjct: 409 MSIEGIFFSFSFISLMGAAFVYFFLPETLGKSFSDIENFFS 449
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307207693|gb|EFN85330.1| Sugar transporter ERD6-like 6 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 251/463 (54%), Gaps = 57/463 (12%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S V IT P+GS + GP+MD GRK +L CVP IIS +L I +I ++Y ++ A
Sbjct: 95 ASLVTITLPIGSLIAGPLMDKFGRKVVCLLSCVPAIISWILLIFNK--SIVIIYAARFIA 152
Query: 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLS--YCFL 177
GI G++T ++Y+SE+ H RP +LCLNSVF+S GIL+T L + LDW ++ C L
Sbjct: 153 GIAAGLTTTGLIYISELSHPQIRPMLLCLNSVFVSLGILITCCLAILLDWHKMAIVVCIL 212
Query: 178 ALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQ 237
++ L F PESP+WL KR+ + ++LK LN+ I+E+E+ + +
Sbjct: 213 ECCILFALF---FVPESPYWLAYFQNGMLDEKRVHEMRRNLKRLNKRQTIYEQEYSRIME 269
Query: 238 V---RTRYDETRNK-----KALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQ 289
V R DET + K + + T+ YKP+++L ILFTLQQ +G Y +IFYAM
Sbjct: 270 VTRNRVANDETSDTLITYIKNYYHK-FTSPSGYKPMVILFILFTLQQLSGSYIIIFYAMS 328
Query: 290 LFKEVGTEI----DESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345
+F E+ + +E++ALV LGI+RF +S++T +R +GR+ L I+S G+ +S
Sbjct: 329 VFDEMSETLSKSFNENNALVMLGIVRFVISILTVFSSRRYGRRILCILSGIGMTIS---- 384
Query: 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSD 405
M L H M + + D+
Sbjct: 385 ---------------------------MFLSGIYMHFTMSHEKNGGTEETMTDY-----K 412
Query: 406 WLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFA 465
WL L F+L Y+ FS G+I IPWT+I EL+P RG+ M+S+ Y+ MF ++K++P+
Sbjct: 413 WLLLFFVLSYICFSTFGIINIPWTLIGELIPVSIRGIGGSFMVSFAYIMMFAVLKSYPYI 472
Query: 466 IH-SSVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYF 507
+ S+ F FG VS +VYF+LPET K+F +IEK F
Sbjct: 473 LKVMSMKNIFFSFGSVSLISTAYVYFFLPETLHKSFSDIEKMF 515
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307173962|gb|EFN64692.1| Sugar transporter ERD6-like 4 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 173/457 (37%), Positives = 259/457 (56%), Gaps = 50/457 (10%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S V IT P+GS ++GP+MD GRK +L C+P +S +L ILA+ ++ +Y +++ A
Sbjct: 110 ASLVTITLPIGSLIVGPLMDKFGRKTVCLLSCIPAAVSWVLLILAN--SLITIYAARVVA 167
Query: 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLAL 179
GI G++TV +VY+SE+ H RP +LCLNSVF+S GIL+T L + +DW ++ FLAL
Sbjct: 168 GIAAGLTTVGLVYISELSHPQVRPMLLCLNSVFVSLGILITCCLAVLIDWHKMAMIFLAL 227
Query: 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEW-RVLCQV 238
V F PESP+WL+ +KR+ K + +LK LNR I+E+E+ R++
Sbjct: 228 ECCI-FVAFYFVPESPYWLVCFTNGMFDDKRICKMKHNLKRLNRRQSIYEQEYLRIMETY 286
Query: 239 RTRYDETRNK--KALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGT 296
+ + ++N K +R+ T+ YKP+ +L +LF LQQ +G Y +IFYA+++F+E+G
Sbjct: 287 QANDERSKNNMTKNYYRK-FTSPVVYKPITILFLLFLLQQLSGCYVIIFYAIEVFREMGG 345
Query: 297 E----IDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMK 352
DE+ ALV LGIIRF +SV+T +R +GR+ L I+S G+ +S L M
Sbjct: 346 SFGRGFDENSALVMLGIIRFVVSVITVFCSRRYGRRALCILSGIGMTISMFLSG----MY 401
Query: 353 STFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFI 412
FT +A++ + + + + WL L F+
Sbjct: 402 IYFT--------------------------------TAYDENGNREETMVDQKWLLLFFV 429
Query: 413 LLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIG 472
L Y+ S G I IPWT+I ELLP RG+ G M+S+ Y MF +VK +P+ I S+
Sbjct: 430 LSYICASTFGFINIPWTLIGELLPVSVRGIGGGFMVSFAYTMMFAVVKNYPY-IKKSMSI 488
Query: 473 TFNVFGLVSFTLVG--FVYFYLPETKGKTFVEIEKYF 507
F + +G FVYF+LPET GK+F +IEKYF
Sbjct: 489 ESIFFSFSFVSFLGTAFVYFFLPETLGKSFSDIEKYF 525
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91084895|ref|XP_969266.1| PREDICTED: similar to sugar transporter [Tribolium castaneum] gi|270008565|gb|EFA05013.1| hypothetical protein TcasGA2_TC015095 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 173/456 (37%), Positives = 255/456 (55%), Gaps = 57/456 (12%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S V I P GS +IGP+MD GRK I +P+ IS + I A ++ LYL++I A
Sbjct: 85 ASIVAIALPAGSLIIGPLMDRFGRKTLCICTTIPFAISWI--IHAAAKSVWHLYLARIIA 142
Query: 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSY--CFL 177
G GG++TVA+VYVSEI H N+R +L LNSVF+S GIL T +L L+ WR ++ CFL
Sbjct: 143 GFSGGLTTVALVYVSEITHPNYRTMLLSLNSVFVSFGILFTCVLGLWFPWRVIATINCFL 202
Query: 178 ALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQ 237
L + L+L+ F PESPHW + +A KSL++L ++P+IFE + R+L
Sbjct: 203 VL---ATLILLWFLPESPHWYTVFKNKPD------QAAKSLEWLYKDPQIFENQLRLLDT 253
Query: 238 VRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTE 297
++R + +++ + YKP +L ++F +QQ + Y +IFYA+ LF+E+G
Sbjct: 254 SAKNRRKSRIDWSFYKESVV----YKPFFILFVIFVIQQLSCGYVIIFYAVDLFREIGGH 309
Query: 298 ----IDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKS 353
+DE ALV LG IRF MS+++ ++++ GR+ L VS G ++S L + + M
Sbjct: 310 FRNGLDEFVALVLLGSIRFVMSIISALISKRVGRRPLFFVSGLGQCLTS--LVAGVYMYF 367
Query: 354 TFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFIL 413
T ++ P+E +L + H + D ++L +L
Sbjct: 368 T-----------VIPPDELAKL---SIHKD-------------------KGDNIALYCVL 394
Query: 414 LYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIG- 472
YV FS++G +VIPWT+I EL P RGV GLM+S Y+ MF VK FPF + I
Sbjct: 395 GYVCFSSLGYLVIPWTLIGELFPVKVRGVLGGLMVSIAYIFMFVAVKIFPFVLDLIKIQC 454
Query: 473 TFNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYFS 508
F V +V+ V F++F+LPET GKTF +IE YF
Sbjct: 455 VFYVMAVVNLCGVIFIFFFLPETLGKTFNDIEAYFK 490
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157138629|ref|XP_001664287.1| sugar transporter [Aedes aegypti] gi|108880575|gb|EAT44800.1| AAEL003899-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 165/459 (35%), Positives = 260/459 (56%), Gaps = 60/459 (13%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S V I P+GS ++G +MD GRK + CVP+ I L +A ++ +Y+++I
Sbjct: 106 ASVVTIALPIGSLIVGQLMDRYGRKKVSLATCVPFAIGWALIAVAK--DVNAIYIARIIL 163
Query: 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLAL 179
G GG++TVA+VYVSE+ H + R +LCLNSVF+S GILLT +L L+LDWRS++ F A
Sbjct: 164 GSSGGLTTVALVYVSELSHVSMRAMLLCLNSVFVSFGILLTCVLALFLDWRSIAMVFTAF 223
Query: 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQV- 238
L++ +LI PESPHWL+ + + ++ + + ++ R + E+++ L
Sbjct: 224 SLVT-FILILIVPESPHWLLTFTK-----RDPSEVREVMHWVYRKRSLAEEQFYQLISTE 277
Query: 239 ----RTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEV 294
R+ D T N+ L ++ Y+PL++L++LF QQ +G Y +IFYA+ +F E+
Sbjct: 278 RSPQRSIADSTPNQFTL--KLYLQPRVYRPLMILLLLFVFQQLSGAYVLIFYALNVFMEI 335
Query: 295 GTE----IDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLL 350
G +E +ALVFLG+IRF MS++T+ +R FGR+ LLI SA+ +G + + + L
Sbjct: 336 GGSQAQGFNEYNALVFLGLIRFIMSILTSGFSRKFGRRPLLITSASTMGCFATIAALYL- 394
Query: 351 MKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLL 410
F ++ + ++ +L L
Sbjct: 395 ---------------------------------------HFIRNAGRESYPIAGSYLLLA 415
Query: 411 FILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH-SS 469
+L YV FSA+G +V+PWTMI E+LP+ +G G ++S YV MFF+VKAFP+ + +
Sbjct: 416 CVLGYVCFSALGYLVLPWTMIGEVLPTDVKGKLGGFVVSVAYVLMFFVVKAFPYLLDLVA 475
Query: 470 VIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYFS 508
+ G F +F + SF V +VY ++PET GK+F EIE+YF+
Sbjct: 476 IQGIFYLFAITSFAGVIYVYGWIPETFGKSFQEIEQYFA 514
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345483674|ref|XP_003424867.1| PREDICTED: facilitated trehalose transporter Tret1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 258/466 (55%), Gaps = 62/466 (13%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S V ++ P+GS ++GP+MD GRK + C+P IIS +L LA+ ++ L+Y++++ A
Sbjct: 97 ASLVTLSLPIGSFIVGPLMDNYGRKKICMASCIPSIISWILLALAN--SLSLIYIARMIA 154
Query: 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLAL 179
G GG+STV +VY+SEI H RP +LC NS+F+S GIL+T L ++L W ++ FL +
Sbjct: 155 GFSGGLSTVGLVYISEITHPQIRPMLLCFNSIFVSLGILITYCLGVWLTWHQIAIIFLVM 214
Query: 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVR 239
+ L+ PESP+W++ + + +R + E L+ LN++ + F++E++ + ++
Sbjct: 215 NVFIFFFLM-LIPESPYWIMCFGK-VELTERKKQVEIVLRRLNKSEQSFQQEFQRINEIS 272
Query: 240 TRY----DETRN--KKALW-RQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFK 292
Y DET + KK L+ + L YKP I+L I+F LQQ G Y +IFYA+ +F+
Sbjct: 273 QSYRNIDDETSSFSKKCLYLYEQLKYPNVYKPTIMLFIIFLLQQLAGTYVIIFYALSVFE 332
Query: 293 EVGTE----IDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSN 348
+G +D+ A+V LG+IRF MS++T + ++ FGR+ L I S G+ S
Sbjct: 333 NIGGNFGKGLDKYGAMVILGVIRFLMSILTALFSKKFGRRILCITSGLGMAFSMFF---- 388
Query: 349 LLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSL-----S 403
S Y+ + TSSC ++ + +
Sbjct: 389 -------------SAMYI------------------------YLTSSCDENGHIKEVMAN 411
Query: 404 SDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFP 463
W+ L+ +L YV S++G +IPWT+I EL P +G+ G+M++ Y+ MF ++K++P
Sbjct: 412 QQWVLLVIVLFYVCTSSIGFTIIPWTLIGELFPISVKGIMGGIMVAIAYIMMFGVIKSYP 471
Query: 464 FAI-HSSVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYFS 508
F + + G F F + S FVY +LPET GK+F EIE YF+
Sbjct: 472 FMMAYMGAQGVFFFFSITSLIAASFVYIFLPETLGKSFSEIENYFN 517
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332027984|gb|EGI68035.1| Solute carrier family 2, facilitated glucose transporter member 6 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 161/461 (34%), Positives = 251/461 (54%), Gaps = 52/461 (11%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S V IT P+GS + GP+MD GRK +L CVP I+ + I A ++ +Y +++ A
Sbjct: 37 ASLVTITLPIGSLIAGPLMDKFGRKIVCLLSCVPAAIAWVSLIFAK--SLITIYAARVVA 94
Query: 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLAL 179
GI G++TV +VY+SEI H R +LCL SVF+S GIL+ L + LDWR ++ F L
Sbjct: 95 GISAGLTTVGLVYISEITHPQIRSMLLCLTSVFVSFGILIPCCLAVMLDWRKMNIIFFVL 154
Query: 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEW-RVLCQV 238
+L F PESP+WL+ KR+ K + SL+ LN+ I+E+E+ R++
Sbjct: 155 ECFIFFILY-FVPESPYWLVCFQNGMLDEKRICKMKHSLRQLNKRQTIYEEEYSRIMETC 213
Query: 239 RTRYDETRNKKAL------WRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFK 292
R + K + + + E YKP+++L +LF LQQ +G Y +IFYA+ +F+
Sbjct: 214 GNRVVNDKASKNIIASVKNYYHTFASPEAYKPMLILFLLFLLQQLSGSYVIIFYAISVFR 273
Query: 293 EVG---TEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNL 349
E+G +E ALV LG IRF +S+VT +R +GR+ L I+S G+ +S +
Sbjct: 274 EMGGTFGNFNEHGALVMLGTIRFVISIVTVFCSRKYGRRVLCILSGIGMAIS-------M 326
Query: 350 LMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSL 409
+ + + A+ +E + + + + WL L
Sbjct: 327 FLSGMYMHFAVSYDE-----------------------------NGNTEETMVDQKWLLL 357
Query: 410 LFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSS 469
F+L Y+ + G I+IPWT+I ELLP RG+ G+M+S+ Y+ MF ++K++P+ + S
Sbjct: 358 FFVLAYICTGSFGFIIIPWTLIGELLPVSIRGIGGGVMVSFAYIIMFAVIKSYPYILKSM 417
Query: 470 VIGTFNVFGLVSFTLVG--FVYFYLPETKGKTFVEIEKYFS 508
I F +L+G F+YF+LPET GK+F +IEK+FS
Sbjct: 418 TI-ESIFFFFSFVSLIGAAFIYFFLPETLGKSFSDIEKFFS 457
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347971941|ref|XP_313749.5| AGAP004457-PA [Anopheles gambiae str. PEST] gi|333469099|gb|EAA09244.6| AGAP004457-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 252/472 (53%), Gaps = 76/472 (16%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S V I P+GS V+G +MD GRK + CVP+ + +L +A N+ ++Y+++I
Sbjct: 115 ASVVTIALPLGSLVVGQLMDQFGRKKISLATCVPFAVGWIL--IAGASNVGMIYIARIIL 172
Query: 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLAL 179
G GG++TVA+VYVSEI H + RP +LC NSVF+S GILLT +L ++ DWR+++Y F
Sbjct: 173 GTSGGLTTVALVYVSEISHVSLRPMLLCANSVFVSFGILLTCVLAVFFDWRAIAYIFAGF 232
Query: 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVR 239
+++ +LI PESPHWL+ + K KA L +L RN ++ E++++ Q+
Sbjct: 233 SVVT-FLLILLIPESPHWLVTFTK-----KDPTKARAVLCWLYRNKKLAEEQFQ---QIA 283
Query: 240 TRYDETR------NKKA------LWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYA 287
TR N KA L ++ Y+P+ +L+++F QQ +G Y +IFYA
Sbjct: 284 ANSTPTRQPPHVTNGKAKCAINSLSLKVFLQPRVYRPMTILLLVFLFQQLSGAYVLIFYA 343
Query: 288 MQLFKEV----------GTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAG 337
+ +F+++ G ++ ALV LG IRF MS++T+ +R +GR+ LL +S
Sbjct: 344 LNVFQQINEATLAQGEQGASFNQYTALVVLGAIRFIMSIITSGCSRRYGRRPLLCISGLA 403
Query: 338 LGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCV 397
+G C YL H+ +
Sbjct: 404 MGA-----------------CMTIGALYL-----------DVLHDRL------------- 422
Query: 398 DHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFF 457
S++ +L L +L YV FSA+G +V+PWTMI ELLP+ +G GL +S YV MF
Sbjct: 423 -GSAVVGSYLLLACVLGYVCFSALGYLVLPWTMIGELLPTDVKGKLGGLTVSIAYVLMFG 481
Query: 458 MVKAFPFAIHSSVI-GTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYFS 508
+VK FP+ + I G F ++ F V ++Y Y+PET GK+F EIE++F+
Sbjct: 482 VVKIFPYLLEQVAIRGIFYLYAATCFAGVAYIYCYVPETYGKSFAEIERFFT 533
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242025604|ref|XP_002433214.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518755|gb|EEB20476.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 165/457 (36%), Positives = 258/457 (56%), Gaps = 61/457 (13%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S + I +P+GS + GP+MD GR+ + +P I S +L + ++ +Y ++I A
Sbjct: 55 ASLMSIATPIGSLLAGPLMDRFGRQKMCAYLMIPIIFSWIL-VATTTSSVYTIYAARIFA 113
Query: 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLAL 179
G+GGG+STV +VYV+EI H + RP +L L SVF+S GILLT +L+ +LDWRS++ C +
Sbjct: 114 GLGGGLSTVTIVYVAEISHPSIRPMLLSLTSVFVSFGILLTPVLSYFLDWRSVAMCCGGM 173
Query: 180 VLISGLVLICFAPESPHWLINMDRTAN-VNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQV 238
++ L+ + F PESP WL+ M N +K + KAEKSLK+L +N E ++E + L ++
Sbjct: 174 A-VTILLSVLFIPESPSWLVGMQANNNDPDKGLKKAEKSLKWLYKNQEDCKEEMKSLMRI 232
Query: 239 RT-RYDE-----TRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFK 292
+ ++ E +N+ R + +KPL +L+I+F LQQFTG Y VIFYA+Q+F+
Sbjct: 233 KDQKHSEKENLLVKNQNGEGRITFGSSRAWKPLSILLIIFFLQQFTGAYIVIFYAIQIFE 292
Query: 293 EVGT-EIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLM 351
+ G+ E D+ L+ LGIIRF M++++ L++ GRK LL G SS+ + +L+
Sbjct: 293 KSGSLEFDQLKCLIVLGIIRFVMAIISMFLSKKVGRKPLL-------GTSSLGMGIVILI 345
Query: 352 KSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLF 411
+ + + L + ++
Sbjct: 346 AAGYIHF-------------------------------------------LGQGLVPIVC 362
Query: 412 ILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SV 470
+L++V F++ G+ IPWT+I ELLP RGV SG+ ++ Y+ MF VK F +H+ +
Sbjct: 363 LLIFVLFASYGMTTIPWTLIGELLPLSVRGVYSGVSVAVAYLLMFITVKLFLMVLHAIGI 422
Query: 471 IGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYF 507
+ F F V F+ V FVYF++PET GKTF EIEK F
Sbjct: 423 VVIFISFSAVCFSFVFFVYFFVPETFGKTFTEIEKAF 459
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291461589|dbj|BAI83429.1| sugar transporter 15 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 262/463 (56%), Gaps = 66/463 (14%)
Query: 61 SFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPG-NIELLYLSKICA 119
S ++T+P+GS V GP+MD +GRK +++ C I +L + P + L+ L++I
Sbjct: 108 SLSVLTTPIGSLVCGPVMDKVGRKPGILIACALSFIGWILILFVTPQFYLPLILLARILG 167
Query: 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLAL 179
G+GGGM+T+A++Y+ E+CHE +RP +L NS+ +S GIL T+ + WR +++ F +
Sbjct: 168 GLGGGMTTIALIYIPEVCHEKYRPLMLGTNSMLVSLGILFVTVTCYFTRWRMMAFEFCLI 227
Query: 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQV- 238
+L++ +V+ + PESP W + M R + AE +L++LN N ++F+ + L ++
Sbjct: 228 ILVNMIVIWLYMPESPVWQLTMKRDRQL------AESTLRWLNPNEKVFDTQLMTLNKLA 281
Query: 239 RTRYD---------ETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQ 289
R+R D T+ K+L+ + +PL++L+ + TLQQF G Y ++ Y +Q
Sbjct: 282 RSRTDCLTDDSSPYLTQKLKSLFHTFFSP-PAKQPLLILIGIMTLQQFCGGYTIVVYTIQ 340
Query: 290 LFKEVGTE----IDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345
+FK++GT+ IDE AL+F+GI+RF SVVT V+++ GR+ LLI SA G+ +SSI
Sbjct: 341 VFKKLGTDFGAGIDEYTALLFMGILRFVFSVVTAVISQFIGRRPLLISSAIGMALSSI-- 398
Query: 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSD 405
AI + Y+ T ++ + +EMQ P
Sbjct: 399 -------------AIPLHHYIDT-------NYPSKLSEMQWP------------------ 420
Query: 406 WLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFA 465
++F L++V F+A+G++ IPW+MI ELLP RG SG +++ Y MFF+VK +P+
Sbjct: 421 ---VIFALVFVSFTALGIMNIPWSMIGELLPMNVRGTASGFLVALAYTIMFFVVKIYPYL 477
Query: 466 IHSSVIGT-FNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYF 507
+ I F GL+ +V+ ++PET GK+ I+++F
Sbjct: 478 LDEFNIDVLFLAQGLLCILTAFYVHIFVPETLGKSLHSIQEHF 520
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | ||||||
| UNIPROTKB|A9ZSY3 | 505 | Tret1 "Facilitated trehalose t | 0.529 | 0.532 | 0.306 | 4.1e-47 | |
| FB|FBgn0034909 | 533 | CG4797 [Drosophila melanogaste | 0.529 | 0.504 | 0.304 | 2.4e-40 | |
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.535 | 0.539 | 0.271 | 6.3e-38 | |
| UNIPROTKB|Q291H8 | 868 | Tret1 "Facilitated trehalose t | 0.535 | 0.313 | 0.294 | 6.9e-38 | |
| UNIPROTKB|B4GAP7 | 869 | Tret1 "Facilitated trehalose t | 0.535 | 0.313 | 0.294 | 6.9e-38 | |
| UNIPROTKB|Q17NV8 | 806 | Tret1 "Facilitated trehalose t | 0.537 | 0.338 | 0.269 | 8.9e-38 | |
| UNIPROTKB|B4MYA4 | 872 | Tret1 "Facilitated trehalose t | 0.521 | 0.303 | 0.294 | 1.1e-37 | |
| UNIPROTKB|B3MG58 | 866 | Tret1 "Facilitated trehalose t | 0.535 | 0.314 | 0.291 | 2.3e-37 | |
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.535 | 0.526 | 0.271 | 3.2e-37 | |
| FB|FBgn0033644 | 488 | Tret1-2 "Trehalose transporter | 0.517 | 0.538 | 0.288 | 3.5e-37 |
| UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 4.1e-47, Sum P(2) = 4.1e-47
Identities = 88/287 (30%), Positives = 159/287 (55%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV 128
VG V GP+++Y+GRK +++ VP+ I +L +A+ N+ +++ ++ G+ G+ ++
Sbjct: 103 VGGIVGGPLIEYLGRKKTIMGTAVPFTIGWML--IANAINVVMVFAGRVICGVCVGIVSL 160
Query: 129 AM-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVL 187
A VY+ E R A+ L + F + GILL ++ YLDW +L++ F A + + +L
Sbjct: 161 AFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLAF-FGAAIPVPFFLL 219
Query: 188 ICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLN-RNPEIFEKEWRVLCQVRTRYDETR 246
+ PE+P W ++ R+ +A KSL++L +N I EKE R L +T D T
Sbjct: 220 MILTPETPRWYVS-------KARVQEARKSLRWLRGKNVNI-EKEMRDLTISQTESDRTG 271
Query: 247 NKKALWRQILTTRECYKPLILLVI-LFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALV 305
++Q+ + R Y P +++ + L QQ TG+ VIFYA +F+ G+ +DE+ A +
Sbjct: 272 GNA--FKQLFSKR--YLPAVMISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLASI 327
Query: 306 FLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMK 352
+G++ F + + T+L GRK LL +S+ + + + L + +K
Sbjct: 328 IIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLK 374
|
|
| FB|FBgn0034909 CG4797 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 87/286 (30%), Positives = 147/286 (51%)
Query: 65 ITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGG 124
+ +P GS + GP+ DY+GR+ +LIL +P ++ + LA +I+++ ++ G G
Sbjct: 110 LATPFGSLLSGPLADYLGRRRTLILSVIPLLLG--WSTLAIAKSIKVVIFARFLCGFATG 167
Query: 125 -MSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLIS 183
+ VY++E N R ++ V S GIL+ L + WRS+++C L L+S
Sbjct: 168 ILGGPGQVYIAETAEPNLRSLLIGAPYVAYSSGILMVYSLGSMMYWRSVAWCANVLPLLS 227
Query: 184 GLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIF-EKEWRVLCQ--VRT 240
+V I F PE+P WL+ N +A ++L FL R EI +KE + Q +
Sbjct: 228 -MVSISFIPETPAWLLR-------NGHEKRALQALSFL-RGSEISAQKELNDMKQRLAKE 278
Query: 241 RYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE 300
R N+ Q+ R KPL+++++ LQ F+G + VIFYA+ + E G E D
Sbjct: 279 RVTTKTNENIF--QLCCQRVAIKPLVIVIVFSLLQMFSGTFIVIFYAVDMISEFGAEFDS 336
Query: 301 SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346
A + ++R +V V+ R++++IVS G G+ ++LS
Sbjct: 337 KQAAIATAVVRVICCMVFCVVLIFVRRRRIMIVSGIGSGLFCLVLS 382
|
|
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 6.3e-38, Sum P(2) = 6.3e-38
Identities = 78/287 (27%), Positives = 148/287 (51%)
Query: 70 GSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVA 129
G GP ++Y+GRK +++ VP+I++ LL A+ +I ++ + +G G+++++
Sbjct: 100 GGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFAN--SIWMVLAGRALSGFCVGIASLS 157
Query: 130 M-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVL-ISGLVL 187
+ VY+ E R + L + F + GIL+ + Y++W L+ F+ +L I +VL
Sbjct: 158 LPVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLA--FIGSILPIPFMVL 215
Query: 188 ICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRN 247
PE+P W + R +A K+L++L E E + + + + +
Sbjct: 216 TLLIPETPRWFVTRGREE-------RARKALQWLRGKKADVEPELKGIVKSHCEAERHAS 268
Query: 248 KKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFL 307
+ A++ L R KPL++ + L QQ +G+ VIFY + +FK+ G+ IDE+ + +
Sbjct: 269 QNAIFD--LMKRSNLKPLLIALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIV 326
Query: 308 GIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKST 354
G++ FG + TVL GRK LL +S + ++ + L + K++
Sbjct: 327 GVVNFGATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNS 373
|
|
| UNIPROTKB|Q291H8 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 6.9e-38, Sum P(2) = 6.9e-38
Identities = 84/285 (29%), Positives = 144/285 (50%)
Query: 70 GSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVA 129
G GP ++Y+GR+ +++ +P+I+SSLL +A N+ ++ + AG G+++++
Sbjct: 464 GGIAGGPFIEYLGRRNTILATAIPFIVSSLL--IACAVNVAMVLAGRFLAGFCVGIASLS 521
Query: 130 M-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLI 188
+ VY+ E R + L + F + GILL + Y+DW L++ AL + L+L+
Sbjct: 522 LPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALP-VPFLILM 580
Query: 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNK 248
PE+P W ++ R KA K+L +L E E + L +R++ D R
Sbjct: 581 FLIPETPRWFVSRGREE-------KARKALSWLRGKEADVEPELKGL--MRSQADADRQA 631
Query: 249 KALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLG 308
L R KPL + + L QQ +G+ VIFY + +FK+ G+ ID + + +G
Sbjct: 632 TQNKMMELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVG 691
Query: 309 IIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKS 353
I+ F + + T+L GRK LL VS + ++ +L KS
Sbjct: 692 IVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKS 736
|
|
| UNIPROTKB|B4GAP7 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila persimilis (taxid:7234)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 6.9e-38, Sum P(2) = 6.9e-38
Identities = 84/285 (29%), Positives = 144/285 (50%)
Query: 70 GSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVA 129
G GP ++Y+GR+ +++ +P+I+SSLL +A N+ ++ + AG G+++++
Sbjct: 465 GGIAGGPFIEYLGRRNTILATAIPFIVSSLL--IACAVNVAMVLAGRFLAGFCVGIASLS 522
Query: 130 M-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLI 188
+ VY+ E R + L + F + GILL + Y+DW L++ AL + L+L+
Sbjct: 523 LPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALP-VPFLILM 581
Query: 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNK 248
PE+P W ++ R KA K+L +L E E + L +R++ D R
Sbjct: 582 FLIPETPRWFVSRGREE-------KARKALSWLRGKEADVEPELKGL--MRSQADADRQA 632
Query: 249 KALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLG 308
L R KPL + + L QQ +G+ VIFY + +FK+ G+ ID + + +G
Sbjct: 633 TQNKMMELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVG 692
Query: 309 IIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKS 353
I+ F + + T+L GRK LL VS + ++ +L KS
Sbjct: 693 IVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKS 737
|
|
| UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 8.9e-38, Sum P(2) = 8.9e-38
Identities = 77/286 (26%), Positives = 150/286 (52%)
Query: 70 GSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVA 129
G + GP+++Y+GRK +++ P+IIS LL A ++ ++ + + +G G+++++
Sbjct: 402 GGILGGPLIEYLGRKNTILATATPFIISWLLIACAT--HVAMVLVGRALSGFSVGVASLS 459
Query: 130 M-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLI 188
+ VY+ E R + L + F + GILL + Y+DW L++ AL I L+L+
Sbjct: 460 LPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALP-IPFLLLM 518
Query: 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNK 248
PE+P W ++ R +A K+L++L + E + + +++ D R+
Sbjct: 519 FLIPETPRWYVSRGRDD-------RARKALQWLRGKKADVDPELKGI--IKSHQDAERHA 569
Query: 249 KALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLG 308
L + KPL++ + L QQ +G+ VIFY +Q+F++ G+ IDE+ + +G
Sbjct: 570 SQSAMLDLMKKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVG 629
Query: 309 IIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKST 354
++ F + + T+L GRK LL +S + ++ + L +K++
Sbjct: 630 VVNFIATFIATMLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNS 675
|
|
| UNIPROTKB|B4MYA4 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila willistoni (taxid:7260)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 82/278 (29%), Positives = 144/278 (51%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV 128
+G GP ++Y+GR+ +++ VP+I+SSLL +A NI ++ L + AG G++++
Sbjct: 466 LGGIAGGPFIEYLGRRNTILTTAVPFIVSSLL--IACAVNITMVLLGRFLAGFCVGIASL 523
Query: 129 AM-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVL 187
++ VY+ E R + L + F + GILL + Y+DW L++ AL + L+L
Sbjct: 524 SLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALP-VPFLIL 582
Query: 188 ICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRN 247
+ PE+P W ++ R +A K+L +L E E + L + + D +
Sbjct: 583 MFLIPETPRWYVSRGREE-------RARKALSWLRGKEADVEPELKGLLRSQADADRSAT 635
Query: 248 KKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFL 307
+ + L R KPL + + L QQ +G+ VIFY +Q+FK+ G+ ID + + +
Sbjct: 636 QNTMLE--LLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVQIFKDAGSTIDGNVCTIIV 693
Query: 308 GIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345
GI+ F + + +L GRK LL VS + ++ +L
Sbjct: 694 GIVNFMATFIGIILIDRAGRKILLYVSNVAMIITLFVL 731
|
|
| UNIPROTKB|B3MG58 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 83/285 (29%), Positives = 145/285 (50%)
Query: 70 GSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVA 129
G GP ++Y+GR+ +++ VP+I+SSLL +A N+ ++ + AG G+++++
Sbjct: 462 GGIAGGPFIEYLGRRNTILATAVPFIVSSLL--IACAVNVAMVLAGRFLAGFCVGIASLS 519
Query: 130 M-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLI 188
+ VY+ E R + L + F + GILL + Y+DW L++ AL + LVL+
Sbjct: 520 LPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALP-VPFLVLM 578
Query: 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNK 248
PE+P W ++ R +A K+L +L E E + L +R++ D R
Sbjct: 579 FLIPETPRWFVSRGREE-------RARKALSWLRGKEADVEPELKGL--MRSQADADRQG 629
Query: 249 KALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLG 308
L R +KPL + + L QQ +G+ VIFY + +FK+ G+ ID + + +G
Sbjct: 630 TQNTMLELLKRSNFKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNVCTIIVG 689
Query: 309 IIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKS 353
++ F + + T+L GRK LL VS + ++ +L K+
Sbjct: 690 VVNFLATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKA 734
|
|
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 3.2e-37, Sum P(2) = 3.2e-37
Identities = 78/287 (27%), Positives = 150/287 (52%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV 128
VG + GP+++Y+GRK +++ P+IIS LL A ++ ++ + + +G G++++
Sbjct: 112 VGGILGGPLIEYLGRKNTILATATPFIISWLLIACAT--HVAMVLVGRALSGFSVGVASL 169
Query: 129 AM-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVL-ISGLV 186
++ VY+ E R + L + F + GILL + Y+DW L+ FL L + L+
Sbjct: 170 SLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELA--FLGATLPVPFLI 227
Query: 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETR 246
L+ PE+P W ++ R +A K+L++L + E + + +++ D R
Sbjct: 228 LMFLIPETPRWYVSRGRDD-------RARKALQWLRGKKADVDPELKGI--IKSHQDAER 278
Query: 247 NKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVF 306
+ L + KPL++ + L QQ +G+ VIFY +Q+F++ G+ IDE+ +
Sbjct: 279 HASQSAMLDLLKKTNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTII 338
Query: 307 LGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKS 353
+G++ F + + T+L GRK LL +S + ++ + L +K+
Sbjct: 339 VGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTLGGFFYVKN 385
|
|
| FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 80/277 (28%), Positives = 143/277 (51%)
Query: 70 GSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVA 129
G GP+++Y+GR+ +++ VP+I+SSLL +A N+ ++ + G G+++++
Sbjct: 85 GGITGGPLIEYLGRRSTILATAVPFIVSSLL--IACAVNVIMILCGRFLTGFCVGIASLS 142
Query: 130 M-VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLI 188
+ VY+ E R + L + + GIL+ + +++W L++ AL + L+L+
Sbjct: 143 LPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALP-VPFLILM 201
Query: 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNK 248
PE+P W +N + +A K+LK+L E E + L Q + D +
Sbjct: 202 IIIPETPRWFVNRGQEE-------RARKALKWLRGKEADVEPELKELMQSQADADRQATQ 254
Query: 249 KALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLG 308
L R KPL + + L QQF+G+ VIFY +Q+FK+ G+ ID + + + +G
Sbjct: 255 NTCLE--LFKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVG 312
Query: 309 IIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVS-SIL 344
++ F + + +L GRK LL VS + V+ SIL
Sbjct: 313 VVNFFATFMGIILIDRLGRKILLYVSDIAMIVTLSIL 349
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9UGQ3 | GTR6_HUMAN | No assigned EC number | 0.2662 | 0.8110 | 0.8126 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 508 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-45 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 8e-39 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 6e-22 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-08 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 9e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-07 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 1e-45
Identities = 112/459 (24%), Positives = 207/459 (45%), Gaps = 72/459 (15%)
Query: 57 GPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116
G S + +GS G + D GRK SL++ V ++I +LL A + +L + +
Sbjct: 49 GLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGR 108
Query: 117 ICAGIG-GGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLD------- 168
+ G+G GG+S + +Y+SEI + R A+ L + I+ GIL+ I+ L L+
Sbjct: 109 VIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDG 168
Query: 169 WRSLSYCFLALVL-ISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEI 227
WR L V I L+ + F PESP WL+ + ++ +A L L ++
Sbjct: 169 WRIP--LGLQFVPAILLLIGLLFLPESPRWLV-------LKGKLEEARAVLAKLRGVSDV 219
Query: 228 FEKEWRVLCQVRTRYDETRN-KKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFY 286
++ + + + + + +KA W ++ + + L++ V+L QQ TG+ + +Y
Sbjct: 220 DQE----IQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYY 275
Query: 287 AMQLFKEVGTEIDESHALVF-LGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345
+ +F+ +G + +S + +G++ F + + L FGR+ LL++ AAG+ + ++L
Sbjct: 276 SPTIFETLG--LSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVL 333
Query: 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSD 405
LL + I
Sbjct: 334 GVALLGVAKSKGAGI--------------------------------------------- 348
Query: 406 WLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFA 465
++++FILL++ F A+G +PW ++SEL P R + + ++ F + FP
Sbjct: 349 -VAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPII 407
Query: 466 IHSSVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIE 504
+ F VF + + FV+F++PETKG+T EI+
Sbjct: 408 TGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 8e-39
Identities = 125/481 (25%), Positives = 213/481 (44%), Gaps = 68/481 (14%)
Query: 38 LVYLKYLTRHYIVMFGSHF-GPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYII 96
+ T + S G S ++ +G+ G + D GRK SL+++ + ++I
Sbjct: 54 PAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVI 113
Query: 97 SSLLTILADPG-NIELLYLSKICAGIG-GGMSTVAMVYVSEICHENFRPAILCLNSVFIS 154
++L LA ++E+L + ++ GIG G S + +Y+SEI + R A+ L + I+
Sbjct: 114 GAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAIT 173
Query: 155 CGILL---TTILNLYLDWRSLSYCFLALVLIS---GLVLICFAPESPHWLINMDRTANVN 208
GIL+ + L+ L L LI + + F PESP WL+ R
Sbjct: 174 FGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRV---- 229
Query: 209 KRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYD-ETRNKKALWRQILT-TRECYKPLI 266
+A KSL L ++ L + + E R+ + W + + TR + L
Sbjct: 230 ---EEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLF 286
Query: 267 LLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVF---LGIIRFGMSVVTTVLAR 323
L V+L QQFTG+ +++Y+ +F+ G + HA + +G + F + V L
Sbjct: 287 LGVVLQWFQQFTGINAIMYYSPTIFENAG--VSTDHAFLVSIIVGAVNFAFTFVAIFLVD 344
Query: 324 GFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNE 383
FGR+ LL++ AAG+ + +L
Sbjct: 345 RFGRRPLLLIGAAGMAICLFVL-------------------------------------- 366
Query: 384 MQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVC 443
+S V SS SS ++++FILL++ F A+G +PW ++SE+ P R
Sbjct: 367 ------GILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420
Query: 444 SGLMISYGYVCMFFMVKAFPFAIHSSVIG-TFNVFGLVSFTLVGFVYFYLPETKGKTFVE 502
+ ++ ++ F + FP + S +G F FG ++ + FVYF+LPETKG+T E
Sbjct: 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480
Query: 503 I 503
I
Sbjct: 481 I 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 6e-22
Identities = 100/485 (20%), Positives = 196/485 (40%), Gaps = 106/485 (21%)
Query: 57 GPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSL-------LTILADPGNI 109
G + +I +G + G + GR+ SL + V + IS+L P N
Sbjct: 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNT 117
Query: 110 ELLY---LSKICAGIGGGM-STVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNL 165
+ + +I GIG G+ S ++ +Y++EI + R ++ N I G L+ +N
Sbjct: 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNY 177
Query: 166 Y------------LDWRSLSYCFLALVLISGL--VLICFAPESPHWLINMDRTANVNKRM 211
+ WR Y F + + + L +L+ F PE+P +L++ +
Sbjct: 178 FIARSGDASWLNTDGWR---YMFASEAIPALLFLMLLYFVPETPRYLMSRGKQE------ 228
Query: 212 AKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLV-- 269
+AE L+ + N + L +++ D R ++L + ++++
Sbjct: 229 -QAEGILRKIMGN----TLATQALQEIKHSLDHGRKTGG---KLLM----FGVGVIVIGV 276
Query: 270 ILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHAL-VFLGIIRFGMSVVTTVLARGFGRK 328
+L QQF G+ V++YA ++FK +G D + + +G+I +V+ + FGRK
Sbjct: 277 MLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 336
Query: 329 QLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPP 388
L I+ A G+ +
Sbjct: 337 PLQIIGALGMAI------------------------------------------------ 348
Query: 389 SAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMI 448
F+ + + ++LL +L YV A+ + W ++SE+ P+ RG + +
Sbjct: 349 GMFSLGTAFYTQAPGI--VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAV 406
Query: 449 SYGYVCMFFMVKAFP-FAIHSSVIGTFN------VFGLVSFTLVGFVYFYLPETKGKTFV 501
+ ++ +F+ FP +S ++ F+ ++G + F++ ++PETKGKT
Sbjct: 407 AAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 466
Query: 502 EIEKY 506
E+E
Sbjct: 467 EMEAL 471
|
Length = 479 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 74/302 (24%), Positives = 124/302 (41%), Gaps = 28/302 (9%)
Query: 56 FGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115
G S +I G+ GP+ D IGR+ L+ + + + +LL LA N+ L +
Sbjct: 54 LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALA--TNVTQLLIL 111
Query: 116 KICAGIG-GGMSTVAMVYVSEICHENFRPAIL----CLNSVFISCGILLTTILNLYLDWR 170
+ AG+G GG+ VSE + FR + C + + G L L WR
Sbjct: 112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171
Query: 171 SLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEK 230
SL Y L+ L+L+ F PES +L+ R V + + ++ E
Sbjct: 172 SLFYVGGIAPLLLLLLLMRFLPESIDFLV-SKRPETVRRIVNAIAPQMQ--------AEA 222
Query: 231 EWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQL 290
+ + Q T+ + KAL++ +LL +L+ + GVY + + +L
Sbjct: 223 QSALPEQKATQGTKRSVFKALFQGKTARI-----TVLLWLLYFMLLV-GVYFLTNWLPKL 276
Query: 291 FKEVGTEIDESHALVFLGIIRFGM---SVVTTVLARGFGRKQLLIVSAAGLGVSSILLSS 347
E+G S A + FG S++ LA G + ++ G V ++L+ S
Sbjct: 277 MVELG--FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLG-AVFAVLVGS 333
Query: 348 NL 349
L
Sbjct: 334 TL 335
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 9e-08
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 59 TTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKIC 118
T S + +GS V G + D GRK L+L + +S +LT + N + + ++
Sbjct: 132 TQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFRLL 189
Query: 119 AGIG-GGMSTVAMVYVSEICHENFRPAILCLNSVFISCG-ILLTTILNLYLDWRSLSYCF 176
G+G GG+ A+V +E + R + L VF S G +LL + DWR L
Sbjct: 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWL-QLA 248
Query: 177 LALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLK 219
++L +L F PESP WLI R+ +A K L+
Sbjct: 249 VSLPTFLFFLLSWFVPESPRWLI-------SQGRIEEALKILQ 284
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 9e-07
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S + +GS + G + D GR+ L+L + + + SLL A ++ LL + +
Sbjct: 40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS--SLWLLLVGRFLL 97
Query: 120 GIG-GGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-DWRSLSYCFL 177
G+G G + A ++E R L L S G LL +L L + + FL
Sbjct: 98 GLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFL 157
Query: 178 ALVLISGLVLICFA 191
L ++ L+ +
Sbjct: 158 ILAILGLLLALLLL 171
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMS-T 127
+ S + G + D GRK L++ +++S+ + L+ NI +L +++ G G +
Sbjct: 13 IYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALV 70
Query: 128 VAMVYVSEICHENFRPAILCLNSVFISC----GILLTTILNLYLDWRSLSYCFLALVLIS 183
+++I R L L S I+ G L +L +L WR+ L L +
Sbjct: 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130
Query: 184 GLVLICFAPES 194
++L PE+
Sbjct: 131 FILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 43/288 (14%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
+ + + + G + D GR+ L++ + + + LL + A ++ LL + ++
Sbjct: 38 LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA--SSLWLLLVLRVLQ 95
Query: 120 GIGGG-MSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-DWRSLSYCFL 177
G+GGG + A +++ R L L S G L +L L FL
Sbjct: 96 GLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFL 155
Query: 178 ALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQ 237
L +++ L + A L+ + + A+
Sbjct: 156 ILAILALLAAVLAA-----LLLPRPPPESKRPKPAE------------------------ 186
Query: 238 VRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTE 297
+ W+ +L + L LL+ F P+ + L +
Sbjct: 187 -----EAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL-----SA 236
Query: 298 IDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345
+ L G++ ++ L+ GR++ L+++ L ++++ L
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGL 284
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 1/161 (0%)
Query: 32 SGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVC 91
G + L YL + + + + G S + +G+ + G + D +GR+ L+L+
Sbjct: 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG 248
Query: 92 VPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSV 151
+ LL + P LL + G + SE+ R L +
Sbjct: 249 LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNT 308
Query: 152 FISCG-ILLTTILNLYLDWRSLSYCFLALVLISGLVLICFA 191
F S G L + L LD FL L ++ L +
Sbjct: 309 FGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMST- 127
+G+ ++ + + R+ L+ + +I+S+LL+ LA + +L L++ AG+ G+
Sbjct: 63 LGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA--PSFAVLLLARALAGLAHGVFWS 120
Query: 128 VAMVYVSEICHENFRPAILCL----NSVFISCGILLTTILNLYLDWRSLSYCFLALVLIS 183
+A + + R L L ++ G+ L T L WR+ FLA+ +++
Sbjct: 121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT---FLAIAVLA 177
Query: 184 GLVLICFAPESP 195
L L+ P
Sbjct: 178 LLALLLLWKLLP 189
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.98 | |
| KOG0255|consensus | 521 | 99.98 | ||
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| KOG0252|consensus | 538 | 99.97 | ||
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| KOG2532|consensus | 466 | 99.96 | ||
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| KOG1330|consensus | 493 | 99.95 | ||
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.94 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.94 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.93 | |
| KOG2533|consensus | 495 | 99.93 | ||
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.93 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.93 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.93 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| KOG2615|consensus | 451 | 99.92 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.91 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.91 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.91 | |
| KOG2504|consensus | 509 | 99.9 | ||
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.9 | |
| KOG3764|consensus | 464 | 99.89 | ||
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.89 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.89 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.88 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.88 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.87 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.86 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.85 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.85 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.84 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.82 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.82 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.81 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.81 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.8 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.8 | |
| KOG2325|consensus | 488 | 99.78 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.76 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.76 | |
| KOG4686|consensus | 459 | 99.76 | ||
| PRK11462 | 460 | putative transporter; Provisional | 99.75 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.73 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.73 | |
| KOG3626|consensus | 735 | 99.72 | ||
| KOG2563|consensus | 480 | 99.72 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.71 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.66 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.59 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.55 | |
| KOG2816|consensus | 463 | 99.5 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.48 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.41 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.38 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.37 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.35 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.34 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.34 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.3 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.27 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.27 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.23 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.23 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.23 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.23 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.22 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.22 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.21 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.2 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.2 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.19 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.19 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.19 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.18 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.18 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.18 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.17 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.17 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.15 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.14 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.13 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.13 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.12 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.12 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.12 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.11 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.11 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.11 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.11 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.11 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.1 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.09 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.09 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.09 | |
| KOG3098|consensus | 461 | 99.08 | ||
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.07 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.07 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.07 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.07 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.06 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.06 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.05 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.05 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.05 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.05 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.04 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.03 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.02 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.01 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.0 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.98 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.98 | |
| KOG3762|consensus | 618 | 98.97 | ||
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.97 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.94 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.93 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.92 | |
| KOG1330|consensus | 493 | 98.91 | ||
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.91 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.91 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.9 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.88 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.87 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.87 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.87 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.86 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.86 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.81 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.81 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.8 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.8 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.8 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.8 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.79 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.79 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.78 | |
| KOG0637|consensus | 498 | 98.78 | ||
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.78 | |
| KOG2615|consensus | 451 | 98.77 | ||
| KOG0569|consensus | 485 | 98.75 | ||
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.74 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.74 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.71 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.71 | |
| KOG2504|consensus | 509 | 98.68 | ||
| KOG3764|consensus | 464 | 98.67 | ||
| KOG4686|consensus | 459 | 98.66 | ||
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.65 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.64 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.64 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.62 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.62 | |
| KOG4332|consensus | 454 | 98.6 | ||
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.6 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.59 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.58 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.58 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.57 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.55 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.5 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.47 | |
| KOG0255|consensus | 521 | 98.45 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.36 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.35 | |
| KOG2532|consensus | 466 | 98.34 | ||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.32 | |
| KOG3810|consensus | 433 | 98.31 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.29 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.29 | |
| KOG0253|consensus | 528 | 98.28 | ||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.27 | |
| KOG2533|consensus | 495 | 98.25 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.24 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.21 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.2 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.2 | |
| KOG0254|consensus | 513 | 98.19 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.09 | |
| KOG1237|consensus | 571 | 98.06 | ||
| KOG2816|consensus | 463 | 97.99 | ||
| KOG3574|consensus | 510 | 97.96 | ||
| KOG3762|consensus | 618 | 97.96 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.91 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.9 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.77 | |
| KOG2325|consensus | 488 | 97.71 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.69 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.66 | |
| KOG0252|consensus | 538 | 97.61 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.6 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.16 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.09 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.82 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.8 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.72 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.66 | |
| KOG1479|consensus | 406 | 96.33 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 96.23 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.08 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.06 | |
| KOG2563|consensus | 480 | 96.01 | ||
| KOG3626|consensus | 735 | 95.77 | ||
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.52 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 94.36 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 94.28 | |
| KOG3098|consensus | 461 | 94.26 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.01 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.81 | |
| KOG3880|consensus | 409 | 93.81 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 91.49 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 91.32 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 88.28 | |
| KOG3097|consensus | 390 | 87.41 | ||
| KOG0637|consensus | 498 | 87.06 | ||
| KOG3574|consensus | 510 | 86.12 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 85.27 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 84.71 | |
| KOG3880|consensus | 409 | 82.88 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 80.95 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=360.15 Aligned_cols=398 Identities=28% Similarity=0.428 Sum_probs=345.2
Q ss_pred chhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHhhcchhhHHH-HHHHh
Q psy8697 56 FGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPG-NIELLYLSKICAGIGGGMSTV-AMVYV 133 (508)
Q Consensus 56 ~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~-~~~~l~~~r~l~G~~~g~~~~-~~~~i 133 (508)
.+.+++.+.+|.++|++..|.++||+|||..+.++.++..++.++..++... .+++++++|++.|+..|.... .+.|+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4667899999999999999999999999999999999988888777765322 399999999999999999999 99999
Q ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhh-cccccc
Q psy8697 134 SEICHENFRPAILCLNSVFISCGILLTTILNLYL------DWRSLSYCFLALVLISGLVLICFAPESPHWLIN-MDRTAN 206 (508)
Q Consensus 134 ~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~-~~~~~~ 206 (508)
.|..|++.||......+.+..+|.+++..++.-- .|++.+....+++++ .++...++||||+|+.. |
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~-~l~~l~~~PESPk~Ll~~k----- 215 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALL-QLALLPFLPESPKYLLIKK----- 215 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHc-----
Confidence 9999999999999999999999999997776433 699999999999998 88889999999999998 6
Q ss_pred hhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhc
Q psy8697 207 VNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFY 286 (508)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (508)
++.++|+++++++++.++++.+.++..++.++++.++++..+.++ +++++..+++..+.+.+...+++.+.+...+|
T Consensus 216 --~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~-~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Y 292 (485)
T KOG0569|consen 216 --GDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQ-LLKNPTLRRPLLIGIVVSFAQQFSGINAIFFY 292 (485)
T ss_pred --CCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHH-HhcCcchhHHHHHHHHHHHHHHhcCcceeHHH
Confidence 999999999999999876655554444343333333335556666 99999999999999999999999999999999
Q ss_pred HHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccc
Q psy8697 287 AMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEY 365 (508)
Q Consensus 287 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 365 (508)
...++++.|++.+. ..+....++..++.++++.+++||+|||++++.+..++.+..+.+. ..
T Consensus 293 st~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~-----------------~~ 355 (485)
T KOG0569|consen 293 STSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMS-----------------IA 355 (485)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-----------------HH
Confidence 99999999997766 4889999999999999999999999999999999999998888887 33
Q ss_pred cccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHH
Q psy8697 366 LVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSG 445 (508)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 445 (508)
....+. . ..+..+..+.+.+++...++.|.+|+++-+.+|++|++.|..+.+
T Consensus 356 ~~l~~~------~----------------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 356 LFLSNS------F----------------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred HHHHHH------h----------------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence 222111 0 012334556778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCCChHHHHhhhC
Q psy8697 446 LMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYFS 508 (508)
Q Consensus 446 ~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (508)
+....+++++++....++.+.+. |. ..|+.+.+.+++..+..++.+||||+|+.+||.++++
T Consensus 408 ~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 408 VATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 99999999999999999999998 66 7899999999999999999999999999999988764
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=332.89 Aligned_cols=400 Identities=34% Similarity=0.551 Sum_probs=335.8
Q ss_pred cchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHh
Q psy8697 55 HFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYV 133 (508)
Q Consensus 55 ~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i 133 (508)
+.+++.+...++..++++++|+++|++|||+.++++.+++.++.+++++++| +++++++|+++|+|.|.... .+.|+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~--~~~l~~GR~l~G~g~G~~~~~~piy~ 167 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS--WYQLIVGRILTGLGVGGASVLAPVYI 167 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhccchhhhhhcchhhH
Confidence 4589999999999999999999999999999999999999999999999999 99999999999999999999 99999
Q ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchh
Q psy8697 134 SEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVN 208 (508)
Q Consensus 134 ~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~ 208 (508)
+|..|++.||...+..+....+|..++..++... +||..+.+..+++++..+. .+++||||+|+.++
T Consensus 168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~------- 239 (513)
T KOG0254|consen 168 SEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEK------- 239 (513)
T ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHc-------
Confidence 9999999999999999999999999998888877 5999999999999984444 89999999999998
Q ss_pred hhHHHHHHHHHHHhC-ChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcH
Q psy8697 209 KRMAKAEKSLKFLNR-NPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYA 287 (508)
Q Consensus 209 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (508)
++.+++++.++++++ ++++.+++.++++.....+......+..++++++ +..+++.++.+.+..++|+++.+...+|.
T Consensus 240 g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~ 318 (513)
T KOG0254|consen 240 GRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYS 318 (513)
T ss_pred CChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeeh
Confidence 999999999999998 3344444443333111111111111112442444 77888899999999999999999999999
Q ss_pred HHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccc
Q psy8697 288 MQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLV 367 (508)
Q Consensus 288 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (508)
+.+++..|.+.+......+.++.++++.+++.++.||+|||++++.+...+.++.++++ ....
T Consensus 319 ~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~-----------------~~~~ 381 (513)
T KOG0254|consen 319 TTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILA-----------------VVGV 381 (513)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH-----------------HHHH
Confidence 99999988865546777888889999999999999999999999999999999999888 3322
Q ss_pred cCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHH
Q psy8697 368 TPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLM 447 (508)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 447 (508)
.... +.+ ......+..+....++...++.+..+++|.+.+|.+|.+.|+++.++.
T Consensus 382 ~~~~-----~~~--------------------~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~ 436 (513)
T KOG0254|consen 382 FALY-----YPN--------------------SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLA 436 (513)
T ss_pred Hhcc-----CCC--------------------cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHH
Confidence 2110 000 112356778888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhh-eeEEEeccCCCCChHHHHhhh
Q psy8697 448 ISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVG-FVYFYLPETKGKTFVEIEKYF 507 (508)
Q Consensus 448 ~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 507 (508)
...+++.+.+....+....+. +....|..+++++.+... +++++.||||+++.||+++.|
T Consensus 437 ~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 437 VAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence 999999999888888777776 446677777777777777 789999999999999998866
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=330.51 Aligned_cols=389 Identities=20% Similarity=0.189 Sum_probs=279.3
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCc----chHHHHHHHHHhhcchhhH
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPG----NIELLYLSKICAGIGGGMS 126 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~----~~~~l~~~r~l~G~~~g~~ 126 (508)
.++.+.+++.+...++..++++++|+++||+|||+++.++.+++.+++++++++++. +++.++++|+++|++.|..
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 132 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGD 132 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhh
Confidence 556677899999999999999999999999999999999999999999999887641 1578999999999999999
Q ss_pred HH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---------------------------hhHHHHHHHHH
Q psy8697 127 TV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL---------------------------DWRSLSYCFLA 178 (508)
Q Consensus 127 ~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---------------------------~wr~~f~~~~~ 178 (508)
.+ ...+++|++|+++|++++++.+....+|.++++.++..+ +||+++.+.++
T Consensus 133 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~i 212 (502)
T TIGR00887 133 YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAV 212 (502)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHH
Confidence 99 999999999999999999999999999999988776432 59999988888
Q ss_pred HHHHHHHhhhhcCCCCchhhhhcccccchhhhH-HHHHHHHHHHhCChhh-hHHHHHHHHHhhhhhhhhhhhHHHHHHHh
Q psy8697 179 LVLISGLVLICFAPESPHWLINMDRTANVNKRM-AKAEKSLKFLNRNPEI-FEKEWRVLCQVRTRYDETRNKKALWRQIL 256 (508)
Q Consensus 179 ~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
++++ .++..+++||||+|+..+ ++. +++.+.+++.+..+.+ +.++.++.++ + ++ ....++.+ ++
T Consensus 213 p~~i-~~~~~~~lpESpr~l~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~-~~-~~~~~~~~-l~ 278 (502)
T TIGR00887 213 PALL-ALYFRLTIPETPRYTADV-------AKDVEQAASDMSAVLQVKIEAEPDEVEKAST---A-VE-VPKASWSD-FF 278 (502)
T ss_pred HHHH-HHHHHHhCCCCHHHHHHh-------CcchHHHHHHHHHHhccccccCcccccchhc---c-cc-chhhhHHH-HH
Confidence 7776 667778899999999887 444 3345555544432111 1111111100 0 01 11122333 55
Q ss_pred cCc---ccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchhh------------H-HHHHHHHHHHHHHHHHHH
Q psy8697 257 TTR---ECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDES------------H-ALVFLGIIRFGMSVVTTV 320 (508)
Q Consensus 257 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------------~-~~~~~~~~~~~~~~~~~~ 320 (508)
+++ +.++..+.....++. +...++....|.|.++++.|++.+.. . ......++.+++.++.++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 357 (502)
T TIGR00887 279 THFFKWRHGKHLLGTAGSWFL-LDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVF 357 (502)
T ss_pred HHHhhhHHHHHHHHHHHHHHH-HHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 222323222222222 22335567778999998888753311 0 223334556678889999
Q ss_pred hhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCC
Q psy8697 321 LARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHS 400 (508)
Q Consensus 321 l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (508)
++||+|||++++.+..+++++..++. ......
T Consensus 358 l~dr~gRR~~l~~~~~~~~~~~~~l~-----------------~~~~~~------------------------------- 389 (502)
T TIGR00887 358 LVDIIGRKPIQLMGFFILTVLFFVLG-----------------FAYNHL------------------------------- 389 (502)
T ss_pred HhhhhcchhHHHHHHHHHHHHHHHHH-----------------HHHHhc-------------------------------
Confidence 99999999998888888777776666 311100
Q ss_pred CCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-----------c
Q psy8697 401 SLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-----------S 469 (508)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-----------g 469 (508)
...........+..+++.+..+..+.+.+|.+|++.|+++.|+.+.+++++++++|.+.|.+.+. +
T Consensus 390 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (502)
T TIGR00887 390 ---STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW 466 (502)
T ss_pred ---chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence 11111222222233345556677788899999999999999999999999999999999999884 2
Q ss_pred cchhHHHHHHHHHHhhheeEEEeccCCCCChHHHHhh
Q psy8697 470 VIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKY 506 (508)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (508)
....|.+++++++++.++. +++|||+++++||+++|
T Consensus 467 ~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 467 MGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE 502 (502)
T ss_pred chHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhCC
Confidence 3457888888888776654 57799999999999876
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=334.25 Aligned_cols=396 Identities=16% Similarity=0.183 Sum_probs=299.7
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
...+.+|.+.++++ ++..+.+++.+++.++.+++++++|+++||+|||++++++.++.++++++++++++ ++.++++
T Consensus 185 ~is~ilp~i~~~~g-ls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s--~~~llv~ 261 (742)
T TIGR01299 185 VVGFVLPSAEKDLC-IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQG--YGFFLFC 261 (742)
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHH
Confidence 34666888988888 89999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----------------hhHHHHHHHH
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----------------DWRSLSYCFL 177 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----------------~wr~~f~~~~ 177 (508)
|++.|++.|...+ ..+++.|++|+++|++.++++..++.+|.++++.++..+ +||+.+++.+
T Consensus 262 R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~ 341 (742)
T TIGR01299 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCA 341 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999998766433 5999999888
Q ss_pred HHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhh----hHHH--HHHHHHhhhh------hhhh
Q psy8697 178 ALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEI----FEKE--WRVLCQVRTR------YDET 245 (508)
Q Consensus 178 ~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~------~~~~ 245 (508)
++.++ .++..+++||||+|+..+ ++.+++.+.+++++..... ..+. .+.++...+. ++..
T Consensus 342 lp~ll-~ll~~~~lPESPrwL~~~-------gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (742)
T TIGR01299 342 FPCVF-AIGALTFMPESPRFFLEN-------GKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDT 413 (742)
T ss_pred HHHHH-HHHHHHHcCCCHHHHHHC-------CCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccc
Confidence 87776 677778899999999998 8888999888887653211 0110 0111110000 0000
Q ss_pred ------------hhhHH---HHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHh----------------
Q psy8697 246 ------------RNKKA---LWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEV---------------- 294 (508)
Q Consensus 246 ------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 294 (508)
..... .+++++ +++++++.+...++++...+ +++.+..|.|.++++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~lf-~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~ 491 (742)
T TIGR01299 414 GTWYQRCFVRALSEGGGIWGNFLRCF-NPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQADDYAALTKNFPGDK 491 (742)
T ss_pred cchhhcchhhhhhhhhhHHHHHHHHc-CccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 00111 122133 55666766666666655444 5889999999876442
Q ss_pred --------------------------CCcc--------------------------------------------------
Q psy8697 295 --------------------------GTEI-------------------------------------------------- 298 (508)
Q Consensus 295 --------------------------g~~~-------------------------------------------------- 298 (508)
|+..
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 571 (742)
T TIGR01299 492 VAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEF 571 (742)
T ss_pred hhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhh
Confidence 0000
Q ss_pred ------------------h------hhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccc
Q psy8697 299 ------------------D------ESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKST 354 (508)
Q Consensus 299 ------------------~------~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~ 354 (508)
+ ......+.+++.+++.++.++++||+|||+++..+.++.+++.+++.
T Consensus 572 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~-------- 643 (742)
T TIGR01299 572 QNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS-------- 643 (742)
T ss_pred hhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH--------
Confidence 0 01234556688899999999999999999999999888888887776
Q ss_pred cccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhcc
Q psy8697 355 FTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 434 (508)
+. . ..+..++..+++.++ ..+..+...++++|+
T Consensus 644 ---------~~-~------------------------------------s~~~ll~~~~l~g~~-~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 644 ---------FG-N------------------------------------SESAMIALLCLFGGL-SIAAWNALDVLTVEL 676 (742)
T ss_pred ---------HH-c------------------------------------cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 31 0 222233333333333 333456667999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeEEEeccCCCCCh
Q psy8697 435 LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLPETKGKTF 500 (508)
Q Consensus 435 ~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (508)
+|++.|++++|+.+..+.+|++++|.+.+.+.+.+...+|++.+++.++++++.+ ++|||+++.+
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 9999999999999999999999999999988877666678777777777665554 4699998753
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=323.68 Aligned_cols=403 Identities=24% Similarity=0.411 Sum_probs=296.4
Q ss_pred HHHHhhhcccc--------cccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC----
Q psy8697 38 LVYLKYLTRHY--------IVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD---- 105 (508)
Q Consensus 38 ~~~~~~i~~~~--------~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~---- 105 (508)
.+..|.+++++ + .++.+.+++.+++.++..++++++|+++||+|||++++++.+++.++.++++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~ 110 (479)
T PRK10077 32 SGTVESLNTVFVAPQNLSES-AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFT 110 (479)
T ss_pred hHhHHHHHHHhccccccccc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 44466676665 4 7888999999999999999999999999999999999999999999998888641
Q ss_pred -----Cc-chHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----------
Q psy8697 106 -----PG-NIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----------- 167 (508)
Q Consensus 106 -----~~-~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----------- 167 (508)
+. .++.++++|+++|++.|...+ ..++++|++|+++|++++++.+.+..+|.++++.++..+
T Consensus 111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 190 (479)
T PRK10077 111 SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190 (479)
T ss_pred cccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 20 256788999999999999999 999999999999999999999999999999988776532
Q ss_pred -hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhh
Q psy8697 168 -DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETR 246 (508)
Q Consensus 168 -~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (508)
+||++|++.+++.++ ..+..+++||+|+++..+ ++.+++++..++.+...+..+ ..++..+..+. +.+
T Consensus 191 ~gWr~~f~~~~~~~~~-~~~~~~~l~~s~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~ 259 (479)
T PRK10077 191 DGWRYMFASEAIPALL-FLMLLYFVPETPRYLMSR-------GKQEQAEGILRKIMGNTLATQ-ALQEIKHSLDH--GRK 259 (479)
T ss_pred CChHHHHHHHHHHHHH-HHHHHHcCCCCcHHHHHc-------CCHHHHHHHHHHHcCChhHHH-HHHHHHHHHHH--hhh
Confidence 799999998888877 455677899999987666 555555555555443322111 11111110000 000
Q ss_pred hhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhccc
Q psy8697 247 NKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGF 325 (508)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~ 325 (508)
... . .+.. .............+.+..+.+...+|.|.+.++.|.+.+. .......++..+++.++.++++||+
T Consensus 260 ~~~---~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~ 333 (479)
T PRK10077 260 TGG---K-LLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF 333 (479)
T ss_pred hhh---h-hcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0 1110 0111222233344455555666778889988888876544 3556667888899999999999999
Q ss_pred CCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcc
Q psy8697 326 GRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSD 405 (508)
Q Consensus 326 grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (508)
|||++++.+..+++++.+.+. .....+ ...
T Consensus 334 g~r~~~i~~~~~~~v~~~~l~-----------------~~~~~~---------------------------------~~~ 363 (479)
T PRK10077 334 GRKPLQIIGALGMAIGMFSLG-----------------TAFYTQ---------------------------------APG 363 (479)
T ss_pred cChHHHHHhHHHHHHHHHHHH-----------------HHHhcC---------------------------------ccc
Confidence 999999999998888887776 321110 022
Q ss_pred hHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHh------hh-ccchhHHHHH
Q psy8697 406 WLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAI------HS-SVIGTFNVFG 478 (508)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~------~~-g~~~~~~~~~ 478 (508)
......+.++..++.....|..+.+++|.+|++.|+++.|+.+..+++++++++.+++.+. +. ++...|.+++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 443 (479)
T PRK10077 364 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 443 (479)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHH
Confidence 2333344445555555556777899999999999999999999999999999988887665 34 6777888888
Q ss_pred HHHHHhhheeEEEeccCCCCChHHHHhhhC
Q psy8697 479 LVSFTLVGFVYFYLPETKGKTFVEIEKYFS 508 (508)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (508)
++++++.++.+++.||+|+++.||++++|+
T Consensus 444 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 444 CMGVLAALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred HHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence 888888777777899999999999998874
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=362.90 Aligned_cols=392 Identities=31% Similarity=0.503 Sum_probs=316.5
Q ss_pred cchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC---CcchHHHHHHHHHhhcchhhHHH-HH
Q psy8697 55 HFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD---PGNIELLYLSKICAGIGGGMSTV-AM 130 (508)
Q Consensus 55 ~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~---~~~~~~l~~~r~l~G~~~g~~~~-~~ 130 (508)
+.+++.+...+|..+|++++|+++||+|||+.++++.++..+++++.++++ + ++.+.++|++.|++.|...+ ..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNN--FWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 468899999999999999999999999999999999999999999999999 8 99999999999999999999 99
Q ss_pred HHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----h---hHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhccc
Q psy8697 131 VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----D---WRSLSYCFLALVLISGLVLICFAPESPHWLINMDR 203 (508)
Q Consensus 131 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~---wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~ 203 (508)
.|+.|..|+++|++..++.+.+..+|.+++..++..+ + ||..+.+..+++++ .++..+++||||+|+..+
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~-~~~~~~~~pESP~wL~~~-- 201 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL-VLLLRFFLPESPRWLLSK-- 201 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccceeccc--
Confidence 9999999999999999999999999999998887655 5 99999999999987 666778999999999999
Q ss_pred ccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchh
Q psy8697 204 TANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPV 283 (508)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (508)
+|.+|+++.++++++.+..+++..+..++.+ +.++.+..++++++++..+++.+..+.+....+..+.+..
T Consensus 202 -----~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (451)
T PF00083_consen 202 -----GRDEEAEKVLRKLRGKEIEDEEIEEIKAEKK----ESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFI 272 (451)
T ss_pred -----ccccccccccccccccccccccccccccccc----cccccceeeeeccccccccccccccccccccccccccccc
Confidence 8888998888886655333322221111111 1111112333377776667777788888888878888888
Q ss_pred hhcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCc
Q psy8697 284 IFYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSN 363 (508)
Q Consensus 284 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 363 (508)
..|.+.++++.+.+.+ .......++..+++.+++.++.||+|||++++.+..+++++.+.+.
T Consensus 273 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~----------------- 334 (451)
T PF00083_consen 273 FYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILG----------------- 334 (451)
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc-----------------
Confidence 8899998888776555 4455566677778888888999999999999998888877776663
Q ss_pred ccc-ccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhh
Q psy8697 364 EYL-VTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGV 442 (508)
Q Consensus 364 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 442 (508)
... ...+. +.......+....++..++..+..++.+.+++|++|++.|++
T Consensus 335 ~~~~~~~~~-----------------------------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~ 385 (451)
T PF00083_consen 335 IIFFLGVSS-----------------------------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRST 385 (451)
T ss_pred ccccccccc-----------------------------ccccccccceeeeecccccccccccccccccccccccccccc
Confidence 100 00000 001233344444455566677788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCCChHHHHhhh
Q psy8697 443 CSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYF 507 (508)
Q Consensus 443 ~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (508)
+.|+....+++++++++.+.+.+.+. +....+.++++++++..++.++++||||++++||++++|
T Consensus 386 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 386 GIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 99999999999999999999998888 657788888888899889999999999999999999987
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=318.45 Aligned_cols=389 Identities=22% Similarity=0.307 Sum_probs=288.2
Q ss_pred HHHhhhcccccccC---CccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 39 VYLKYLTRHYIVMF---GSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 39 ~~~~~i~~~~~~~s---~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
+..+.+.+|++ ++ +.+.+++.+++.+|..+++++.|+++||+|||++++++.++.+++.++.+++++ ++.+++.
T Consensus 110 ~~~~~i~~e~~-l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVTEWD-LVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN--YTVFLVF 186 (505)
T ss_pred cccccEEEEec-ceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc--HHHHHHH
Confidence 56788999998 88 889999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhhhhcCCC
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-DWRSLSYCFLALVLISGLVLICFAPE 193 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-~wr~~f~~~~~~~~~~~~~~~~~l~e 193 (508)
|++.|++.+...+ ..+++.|++|+++|+++.++.+.+..+|.++++.++..+ +||+.+++.+++.++ ..+..+++||
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~e 265 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFL-FFLLSWFVPE 265 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHhcCC
Confidence 9999999999999 999999999999999999999999999999999998877 899999999998887 5555588999
Q ss_pred CchhhhhcccccchhhhHHHHHHHHHHHhCChhh-hHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHH
Q psy8697 194 SPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEI-FEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILF 272 (508)
Q Consensus 194 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (508)
+|+|+..+ ++.+++.+.+++..+.+.. ..++....+.+ ++.++++++....+ +++++..++..+.....+
T Consensus 266 sp~~l~~~-------~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~ 336 (505)
T TIGR00898 266 SPRWLISQ-------GRIEEALKILQRIAKINGKKLPAEVLSLSLE-KDLSSSKKQYSFLD-LFRTPNLRKTTLCLMMLW 336 (505)
T ss_pred ChHHHHHC-------CCHHHHHHHHHHHHHHcCCCCCHHHHhhhhh-hhhhhccCCCcHHH-HhCChHHHHHHHHHHHHH
Confidence 99999888 6666666655554331111 11111000000 00011111224444 888887776555544433
Q ss_pred HHHhhcccchhhhcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccc
Q psy8697 273 TLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMK 352 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~ 352 (508)
+..... ++.. +.+..+.+ .+......+.++..+++.++.+++.||+|||+.+..+.++.+++.+++.
T Consensus 337 ~~~~~~-~~~~----~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~------ 403 (505)
T TIGR00898 337 FTTAFS-YYGL----VLDLGNLG--GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL------ 403 (505)
T ss_pred HHHHHH-HHHH----hccccccC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH------
Confidence 322111 1111 12222222 2344555667788889999999999999999999998888888877666
Q ss_pred cccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhh
Q psy8697 353 STFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMIS 432 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (508)
.... ...+.......+..++ ..+..+..+.+.+
T Consensus 404 -----------~~~~-----------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 436 (505)
T TIGR00898 404 -----------FVPV-----------------------------------DLYFLRTALAVLGKFG-ITSAFQMVYLYTA 436 (505)
T ss_pred -----------HcCC-----------------------------------CchHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 3111 0122222222222222 2333456678999
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeEEEeccCCCCChHH
Q psy8697 433 ELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVE 502 (508)
Q Consensus 433 e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (508)
|.+|++.|+++.|+.+..+.+|++++|.+.+ +.+.+...++.+++++.+++.++. +++|||++++++|
T Consensus 437 e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 437 ELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred ccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 9999999999999999999999999999998 555566778888888877776554 4579999987654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=307.51 Aligned_cols=411 Identities=28% Similarity=0.470 Sum_probs=297.9
Q ss_pred hHHHHhhhcccccccC--------CccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCc-
Q psy8697 37 YLVYLKYLTRHYIVMF--------GSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPG- 107 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s--------~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~- 107 (508)
..+..+.+.++++ .+ ..+.+++.+++.++..++++++|+++||+|||++++.+.+++.++.+++.+..+.
T Consensus 47 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 125 (481)
T TIGR00879 47 IGGALALPAFEFK-FTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFAL 125 (481)
T ss_pred hhhhhhcHHHHHh-cCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445666666665 55 7899999999999999999999999999999999999999999999999665441
Q ss_pred chHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHH---Hhh----hhHHHHHHHHHH
Q psy8697 108 NIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILN---LYL----DWRSLSYCFLAL 179 (508)
Q Consensus 108 ~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~---~~l----~wr~~f~~~~~~ 179 (508)
+++.++++|+++|++.+...+ ...++.|++|+++|++++++.+.+..+|.++++.++ ... +||+.|++.++.
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~ 205 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP 205 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 256899999999999999999 999999999999999999999999999999999999 443 899999997666
Q ss_pred HHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHH---HHHHhhhhhhhhhhhHHHHHHHh
Q psy8697 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWR---VLCQVRTRYDETRNKKALWRQIL 256 (508)
Q Consensus 180 ~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
.++ .++..+++||+|++...+ ++.+++++..++....++...+..+ ......+. +....... +++.+
T Consensus 206 ~~~-~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 275 (481)
T TIGR00879 206 AGL-LFLGLFFLPESPRWLVGK-------GRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI-EKRSVQPS-WGSLF 275 (481)
T ss_pred HHH-HHHHHhcCCCChHHHHHc-------CChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH-HHhhcccc-HHHHH
Confidence 665 666677899999876655 3333333333333222111111111 00000000 00000111 22133
Q ss_pred cCcc-cchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhh
Q psy8697 257 TTRE-CYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVS 334 (508)
Q Consensus 257 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~ 334 (508)
+..+ ..++.+....+..+.+.........+.|.+.++.|++... ........+..+++.++.+++.||++||+.+..+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 355 (481)
T TIGR00879 276 SSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIG 355 (481)
T ss_pred hcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3211 2344555555555555555667788889998888886644 3566677788899999999999999999999888
Q ss_pred hhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHH
Q psy8697 335 AAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILL 414 (508)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (508)
..+.+++.+.+. ........ . ......+..+....+
T Consensus 356 ~~~~~~~~~~~~-----------------~~~~~~~~--------~-------------------~~~~~~~~~~~~~~~ 391 (481)
T TIGR00879 356 AAGMAICLFVLG-----------------ILGASFVT--------G-------------------SSKSSGNVAIVFILL 391 (481)
T ss_pred HHHHHHHHHHHH-----------------HHhhcccC--------C-------------------cccchhHHHHHHHHH
Confidence 777777766665 21111000 0 000013334444445
Q ss_pred HHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEec
Q psy8697 415 YVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLP 493 (508)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
+..+++.+..+....++.|.+|++.|+++.|+.+...++|++++|.+.+.+.+. ++...|++.++++++++++.+++.|
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 555666666677778889999999999999999999999999999999999988 9988999999998888888888889
Q ss_pred cCCCCChHH
Q psy8697 494 ETKGKTFVE 502 (508)
Q Consensus 494 ~~~~~~~~~ 502 (508)
|+|+++.+|
T Consensus 472 ~~~~~~~~~ 480 (481)
T TIGR00879 472 ETKGRTLEE 480 (481)
T ss_pred cCCCCChhh
Confidence 999887654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=271.16 Aligned_cols=343 Identities=18% Similarity=0.202 Sum_probs=276.1
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
....+|++.+|++ +|..+.|++.+.|.++..+++++...+.||+.||++++..+.++.++++++++++| |+.++++|
T Consensus 32 ~~gLLp~iA~dl~-vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~--f~~Ll~aR 108 (394)
T COG2814 32 PVGLLPPIAADLG-VSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPS--FAVLLLAR 108 (394)
T ss_pred HHhchHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 4556999999999 99999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcC
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFA 191 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l 191 (508)
++.|++.|..++ ..++..+..|+++|++++++...+.+++.++|.+++.++ |||..|++.+.++++..+..+..+
T Consensus 109 ~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~l 188 (394)
T COG2814 109 ALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLL 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999 999999999999999999999999999999998888888 999999999999999888888889
Q ss_pred CCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHH
Q psy8697 192 PESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVIL 271 (508)
Q Consensus 192 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (508)
| |+..... .+...++.++ .+++|..+..++
T Consensus 189 P--~~~~~~~------------------------------------------~~~~~~~~~~-~l~~p~v~~~l~----- 218 (394)
T COG2814 189 P--PSEISGS------------------------------------------LPGPLRTLLR-LLRRPGVLLGLL----- 218 (394)
T ss_pred C--CccCCCC------------------------------------------CCcchhHHHH-HhcCchHHHHHH-----
Confidence 9 2110000 1111223344 777776554333
Q ss_pred HHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcc
Q psy8697 272 FTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNL 349 (508)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~ 349 (508)
..+...++.+....|...++++ .|++.+. ......++++.++|+.++|++.|| +.|+.+.....++.+..+.+.
T Consensus 219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~--- 294 (394)
T COG2814 219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALT--- 294 (394)
T ss_pred HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHH---
Confidence 3333445577788888888887 6776644 688899999999999999999999 888888888888888887777
Q ss_pred ccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHh
Q psy8697 350 LMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWT 429 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (508)
+... ..+.....+.++++ ...+....
T Consensus 295 --------------~~~~------------------------------------~~~~~~~~~~~wg~----a~~~~~~~ 320 (394)
T COG2814 295 --------------FTGA------------------------------------SPALALALLFLWGF----AFSPALQG 320 (394)
T ss_pred --------------Hhcc------------------------------------hHHHHHHHHHHHHH----HhhhhhhH
Confidence 4211 23333333333222 22233333
Q ss_pred hhhccCc--ccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEE
Q psy8697 430 MISELLP--SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYF 490 (508)
Q Consensus 430 ~~~e~~p--~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 490 (508)
+..+..+ ++.+..+.+++....++|..+|..+.|.+.|+ |+....++.+.+.+++.++...
T Consensus 321 ~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 321 LQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 57789999999999999999999999999999 9998888888888887766544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=290.32 Aligned_cols=382 Identities=16% Similarity=0.163 Sum_probs=254.1
Q ss_pred hhhhhhhhchhhhHHHHhhhcccccccCCcc-chh-----HHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHH
Q psy8697 25 HMYTQRWSGLFYYLVYLKYLTRHYIVMFGSH-FGP-----TTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISS 98 (508)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~-~g~-----~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~ 98 (508)
.+....+.+...+....|.+.+++. .+.++ .++ +.++.++++.+++++.|+++||+|||+++.++.+++++++
T Consensus 23 ~g~~~~~~d~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~ 101 (490)
T PRK10642 23 LGNAMEWFDFGVYGFVAYALGKVFF-PGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSIST 101 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3444445556666777888888876 33322 222 2577889999999999999999999999999999999999
Q ss_pred HHHHhcCCcchHH--------HHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHh---
Q psy8697 99 LLTILADPGNIEL--------LYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY--- 166 (508)
Q Consensus 99 ~l~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~--- 166 (508)
++++++++ ++. ++++|+++|++.|...+ ..++++|++|+++||++.++.+.+..+|..+++.+...
T Consensus 102 ~~~a~~~~--~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~ 179 (490)
T PRK10642 102 FCIGLIPS--YATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIST 179 (490)
T ss_pred HHHHhccc--HHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 864 89999999999999999 99999999999999999999998888888887755432
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHH
Q psy8697 167 ---------LDWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQ 237 (508)
Q Consensus 167 ---------l~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (508)
.|||++|++.+++.++ .++....+||+|+|...+ ++.++..+ +
T Consensus 180 ~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~-------~~~~~~~~--------------------~ 231 (490)
T PRK10642 180 IVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHV-------DKLEQGDR--------------------E 231 (490)
T ss_pred hcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHH-------Hhhhhhcc--------------------c
Confidence 2899999998776665 556667899999874322 11100000 0
Q ss_pred hhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhh-HHHHHHHHHHHHHH
Q psy8697 238 VRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDES-HALVFLGIIRFGMS 315 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~ 315 (508)
.. .+++..+..+ ++++ .++.........+ .....++....|.|.++++ .|++.... .......++.+++.
T Consensus 232 ~~----~~~~~~~~~~-~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~ 303 (490)
T PRK10642 232 GL----QDGPKVSFKE-IATK--HWRSLLTCIGLVI-ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQ 303 (490)
T ss_pred cc----cccccCCHHH-HHHH--hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 0000111122 4432 1232332222222 2223456677899999865 57755443 44555667788889
Q ss_pred HHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCc
Q psy8697 316 VVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSS 395 (508)
Q Consensus 316 ~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
++.|+++||+|||+.+..+.++..++...+. .....
T Consensus 304 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~-----------------~~~~~--------------------------- 339 (490)
T PRK10642 304 PVMGLLSDRFGRRPFVILGSVALFVLAIPAF-----------------ILINS--------------------------- 339 (490)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-----------------HHHhC---------------------------
Confidence 9999999999999988777654433332222 11000
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c-cchh
Q psy8697 396 CVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S-VIGT 473 (508)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~~~ 473 (508)
...........+...+.+... .....+..|.+|++.|+++.|+.+..+.+++.++|.+.+++.+. + +..+
T Consensus 340 -------~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~ 411 (490)
T PRK10642 340 -------NVIGLIFAGLLMLAVILNCFT-GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMP 411 (490)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHH
Confidence 011222222222222222222 23347778999999999999987777888889999999999876 3 4545
Q ss_pred HHHHHHHHHHhhheeEEEeccCCCC
Q psy8697 474 FNVFGLVSFTLVGFVYFYLPETKGK 498 (508)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (508)
++...+.++++.+.. ++.||++++
T Consensus 412 ~~~~~~~~~i~~~~~-~~~pes~~~ 435 (490)
T PRK10642 412 AYYLMVVAVIGLITG-VTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHH-HHhccccCC
Confidence 555555555544433 345887654
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=298.30 Aligned_cols=388 Identities=13% Similarity=0.066 Sum_probs=267.2
Q ss_pred hHHHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHH
Q psy8697 19 TYVRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISS 98 (508)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~ 98 (508)
.+.....++...+.++....+..|.+.++++ ++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.
T Consensus 30 i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 108 (467)
T PRK09556 30 SYLVVFIGYLTMYLIRKNFKAAQNDMISTYG-LSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICM 108 (467)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHH
Confidence 3444455555566666667788999999998 999999999999999999999999999999999999998888888777
Q ss_pred HHHHh-----cCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----
Q psy8697 99 LLTIL-----ADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----- 167 (508)
Q Consensus 99 ~l~~~-----~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----- 167 (508)
++.++ +++ ++.+++.|+++|++.+...+ ..++++|++|+++||+++++++.+.++|.++++.+...+
T Consensus 109 ~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 109 LGFGASLGSGSVS--LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHHHHHHhcccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 76665 578 99999999999999999999 999999999999999999999999999999998887543
Q ss_pred --hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhh
Q psy8697 168 --DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDET 245 (508)
Q Consensus 168 --~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (508)
+||..|.+.+++.++..++.+++.+|+|+....+ + .++ . ..+....++ +. ++.++.
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-------~-~~~---~---~~~~~~~~~-------~~-~~~~~~ 244 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-------K-AEE---I---FGEPISEED-------KE-TESTDM 244 (467)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-------C-hhh---c---ccCccchhh-------hc-cccccC
Confidence 4899999888888876666666778776432111 0 000 0 000000000 00 000000
Q ss_pred hhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhc
Q psy8697 246 RNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLAR 323 (508)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~d 323 (508)
...+...+..++++..+.. .+..+...........|.|.++++ .|++... ........++.+++.++.|+++|
T Consensus 245 ~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsD 319 (467)
T PRK09556 245 TKWQIFVEYVLKNPVIWLL-----CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSD 319 (467)
T ss_pred cHHHHHHHHHHcChHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011112225566544432 222222222245577899999876 6776654 35666677889999999999999
Q ss_pred ccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCC
Q psy8697 324 GFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLS 403 (508)
Q Consensus 324 r~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (508)
|++||+.+.....+..++...+. . ... .
T Consensus 320 r~g~r~~~~~~~~~~~~~~~~~~-----------------~-~~~----------------------------------~ 347 (467)
T PRK09556 320 LANGRRALVACIALALIIFTLGV-----------------Y-QHA----------------------------------T 347 (467)
T ss_pred HHCCCchHHHHHHHHHHHHHHHH-----------------H-Hhc----------------------------------C
Confidence 99999876655444433322222 1 000 0
Q ss_pred cchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHH-HHHHHHHHhHHHhh------------h-c
Q psy8697 404 SDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYV-CMFFMVKAFPFAIH------------S-S 469 (508)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~i~~~~~g~l~~------------~-g 469 (508)
+.+...+..++.+. ...+..........|.+|++.+|++.|+.+..+++ |.+++|.+.|.+.| . +
T Consensus 348 ~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~ 426 (467)
T PRK09556 348 SEYMYLASLFALGF-LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG 426 (467)
T ss_pred cHHHHHHHHHHHHH-HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC
Confidence 22222222222222 22222222235677999999999999999999997 77999999999999 5 7
Q ss_pred cchhHHHHHHHHHHhhheeE
Q psy8697 470 VIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~ 489 (508)
|...|.+++++.+++.+..+
T Consensus 427 ~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 427 WAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777655544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=275.09 Aligned_cols=390 Identities=14% Similarity=0.156 Sum_probs=294.2
Q ss_pred HHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHH
Q psy8697 21 VRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLL 100 (508)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l 100 (508)
+....++..-+..+-.+....|.+.++.+ +|.+|+|++.+.+.+.+.++-++.|.++||.+.|+.+.+++++.++.+++
T Consensus 32 ~~~fiGYa~fYl~RknF~~a~p~l~e~~~-lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil 110 (448)
T COG2271 32 LSIFIGYAAFYLTRKNFNLAMPALIEDGG-LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL 110 (448)
T ss_pred HHHHHHHHHHHHHHHhHhhccHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHH
Confidence 33344444444444445677899999988 99999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHH--Hhh----hhHHHH
Q psy8697 101 TILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILN--LYL----DWRSLS 173 (508)
Q Consensus 101 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~--~~l----~wr~~f 173 (508)
++++++ .+.+.+..++.|...|...| +...++.|++++|||+..++++++-++|..+.|++. +.+ +||..|
T Consensus 111 ~Gfs~s--~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f 188 (448)
T COG2271 111 FGFSPS--LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAF 188 (448)
T ss_pred HhhhhH--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHH
Confidence 999999 99999999999999999999 999999999999999999999999999999999988 666 899999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhh-hhhhHHHH
Q psy8697 174 YCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDE-TRNKKALW 252 (508)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 252 (508)
++.++++++..++.++..+|+|+..-.. ..+| .++++. +.+ +++++.+ -..++..+
T Consensus 189 ~~pgiiaiival~~~~~~rd~Pqs~GLP--------~ie~-------~~~d~~-------e~~-~~~~~~~~ls~~~i~~ 245 (448)
T COG2271 189 YFPGIIAIIVALILLFLLRDRPQSEGLP--------PIEE-------YRGDPL-------EIY-EEEKENEGLTAWQIFV 245 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccCCC--------CHHH-------hhcCch-------hhh-hhhccCCCccHHHHHH
Confidence 9999999998999999999998643211 0000 010000 000 0011011 22344455
Q ss_pred HHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhccc--CCe
Q psy8697 253 RQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGF--GRK 328 (508)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~--grr 328 (508)
+.+++||..|...+.-+++. ..-+.+..|.|.|+.| .|++... .....++-.++++|+++.|+++||+ |||
T Consensus 246 ~YVL~Nk~iW~la~a~vfvY-----ivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR 320 (448)
T COG2271 246 KYVLKNKLIWLLALANVFVY-----VVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRR 320 (448)
T ss_pred HHHHcChHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccc
Confidence 66788885544333333333 3367899999999988 6776654 5788889999999999999999997 677
Q ss_pred eehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHH
Q psy8697 329 QLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLS 408 (508)
Q Consensus 329 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (508)
....+.+.+.....++.. .. . +..++..
T Consensus 321 ~p~~~i~~~~i~~~~~~~-----------------w~--~---------------------------------~~~~~~l 348 (448)
T COG2271 321 GPMALIFMLLITASLVLY-----------------WL--A---------------------------------PNGSYLL 348 (448)
T ss_pred chHHHHHHHHHHHHHHHH-----------------Hc--C---------------------------------CCccHHH
Confidence 665544443333333333 11 1 1123344
Q ss_pred HHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHH-HHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhh
Q psy8697 409 LLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYV-CMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVG 486 (508)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 486 (508)
...++...++...+..-+....+.|..|.+..|++.|+...++++ |...+....|++.|. ||...|.++.+.++++.+
T Consensus 349 ~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~l 428 (448)
T COG2271 349 DAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAIL 428 (448)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHH
Confidence 444444445555555555557889999999999999999999999 888999999999998 999999988888888766
Q ss_pred eeEEEec
Q psy8697 487 FVYFYLP 493 (508)
Q Consensus 487 ~~~~~~~ 493 (508)
+......
T Consensus 429 ll~~~~~ 435 (448)
T COG2271 429 LLLPVWN 435 (448)
T ss_pred HHHHHHh
Confidence 6554444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=288.32 Aligned_cols=383 Identities=12% Similarity=0.077 Sum_probs=264.6
Q ss_pred hhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchH
Q psy8697 31 WSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIE 110 (508)
Q Consensus 31 ~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~ 110 (508)
+.....+.+.+|.+.++++ .++.+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++.+++++ ++
T Consensus 36 ~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~ 112 (434)
T PRK11663 36 YFTRKSFNAAMPEMLADLG-LSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS--LW 112 (434)
T ss_pred HHhhhhHHHhhHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH--HH
Confidence 3333345667889988887 99999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q psy8697 111 LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGL 185 (508)
Q Consensus 111 ~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~ 185 (508)
.+++.|++.|++.|...+ ..+++.|++|+++|++++++.+.+.++|..+++.+++.+ +||+.|++.+++.++..+
T Consensus 113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999889 999999999999999999999999999999999988877 999999999888776555
Q ss_pred hhhhcCCCCchhhhhcccccchhhhHH-HHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHH-HHHhcCcccch
Q psy8697 186 VLICFAPESPHWLINMDRTANVNKRMA-KAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALW-RQILTTRECYK 263 (508)
Q Consensus 186 ~~~~~l~esp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 263 (508)
+..+++||+|++...++. ++.+ ++++ ..+++.+++.+.+..+ +..++++..+.
T Consensus 193 ~~~~~~~~~p~~~~~~~~-----~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (434)
T PRK11663 193 FLCWRLRDKPQAMGLPSV-----GEWRHDALE--------------------LAQQQEGAGLSRKEILTKYVLLNPYIWL 247 (434)
T ss_pred HHHHHcCCCHhhcCCCCc-----ccccccccc--------------------cchhccccCCChhhhHHHHHhcChHHHH
Confidence 666678888754211100 0000 0000 0000000000111111 11344443232
Q ss_pred hHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhccc--CCeeeh-hhhhhHH
Q psy8697 264 PLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGF--GRKQLL-IVSAAGL 338 (508)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l-~~~~~~~ 338 (508)
.....+........+..|.|.++++ .|++... ........++..+++++.|++.||+ ++|+.. .......
T Consensus 248 -----~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 248 -----LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 1121222222244566788999865 6776554 4566777888999999999999998 333332 2222222
Q ss_pred HHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHH
Q psy8697 339 GVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFF 418 (508)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (508)
.+....+. .... .............++
T Consensus 323 ~~~~~~~~-----------------~~~~------------------------------------~~~~~~~~~~~~~g~ 349 (434)
T PRK11663 323 LLSVGSLW-----------------LMPF------------------------------------ASYVMQAACFFTIGF 349 (434)
T ss_pred HHHHHHHH-----------------Hccc------------------------------------ccHHHHHHHHHHHHH
Confidence 22222222 1100 111111111111122
Q ss_pred HhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCC
Q psy8697 419 SAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKG 497 (508)
Q Consensus 419 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (508)
+..+..........|.+|++.|+++.|+.+...++|.+++|.+.|.+.+. |+...|...+++.+++++..+...+++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK11663 350 FVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAP 429 (434)
T ss_pred HHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 22222223345678999999999999999999999999999999999998 99999999988888877666555555555
Q ss_pred CC
Q psy8697 498 KT 499 (508)
Q Consensus 498 ~~ 499 (508)
++
T Consensus 430 ~~ 431 (434)
T PRK11663 430 RE 431 (434)
T ss_pred hc
Confidence 44
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=279.86 Aligned_cols=375 Identities=14% Similarity=0.118 Sum_probs=261.4
Q ss_pred hhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc
Q psy8697 25 HMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA 104 (508)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~ 104 (508)
.++...+.+........|.+++|++ .++.+.|++.+++.+++.+++++.|+++||+|||+++..+.+++.+++++++++
T Consensus 15 ~~~~~~~~d~~~~~~~~~~l~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 93 (412)
T TIGR02332 15 ILFIFSFLDRINIGFAGLTMGKDLG-LSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA 93 (412)
T ss_pred HHHHHHHhhhhhHHHHHHhhHhhcC-CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666777889999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----------hhHHHH
Q psy8697 105 DPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----------DWRSLS 173 (508)
Q Consensus 105 ~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----------~wr~~f 173 (508)
++ ++.+++.|+++|++.+...+ ...++.|++|+++|++++++++.+..+|..+++.+++.+ |||+.|
T Consensus 94 ~~--~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f 171 (412)
T TIGR02332 94 TG--PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLF 171 (412)
T ss_pred cC--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHH
Confidence 99 99999999999999999999 889999999999999999999999999999999987653 899999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchh---hhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhh-hhhhhhhH
Q psy8697 174 YCFLALVLISGLVLICFAPESPHW---LINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTR-YDETRNKK 249 (508)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~esp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 249 (508)
++.+++.++..++.++++||+|+. +.++ ++ ++..+ ..+.+... .++.++. .++....+
T Consensus 172 ~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~-------~~-~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~ 233 (412)
T TIGR02332 172 LLEGFPSVILGVMTWFWLDDSPDKAKWLDEE-------DK-KALKE---MIDNDQLT-------LEQPEGAFAHAAMPQR 233 (412)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccCCCCCHH-------HH-HHHHH---HHHhcccc-------ccccccccccccccHH
Confidence 999988887667777888999852 1111 11 11111 11000000 0000000 00011112
Q ss_pred HHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHh--CCcchh-hHHHHHHHHHHHHHHHHHHHhhcccC
Q psy8697 250 ALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEV--GTEIDE-SHALVFLGIIRFGMSVVTTVLARGFG 326 (508)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~g 326 (508)
..++ .++++.. +...+..++.....+.+..|.|.++++. +++... ........++.+++.++.++++||++
T Consensus 234 ~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~ 307 (412)
T TIGR02332 234 SMLR-EIFTPAI-----MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLK 307 (412)
T ss_pred HHHH-HhcChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccC
Confidence 2333 2223322 2223333334444667888999999885 333332 45667778889999999999999999
Q ss_pred Ceeeh-hhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcc
Q psy8697 327 RKQLL-IVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSD 405 (508)
Q Consensus 327 rr~~l-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (508)
+|+.. .....+..++. .+. .. . ...
T Consensus 308 ~r~~~~~~~~~~~~~~~-~~~-----------------~~--~----------------------------------~~~ 333 (412)
T TIGR02332 308 ERKHHTALPYLFAAAGW-LLA-----------------SA--T----------------------------------DHN 333 (412)
T ss_pred ccHHHHHHHHHHHHHHH-HHH-----------------Hh--c----------------------------------CCH
Confidence 77743 33333333332 222 11 0 011
Q ss_pred hHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHH
Q psy8697 406 WLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVS 481 (508)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~ 481 (508)
......+.+...+. ....+..+....|.+|++.|+++.|+.+..+++|++++|.+.|.+.+. +|...+.+.+++.
T Consensus 334 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 334 LIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 21221122211111 122233445667889999999999999999999999999999999997 4777777666543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=274.49 Aligned_cols=347 Identities=12% Similarity=0.055 Sum_probs=243.5
Q ss_pred hhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHH
Q psy8697 35 FYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYL 114 (508)
Q Consensus 35 ~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~ 114 (508)
..+.|.+|.+++|++ +|+.+.|++.+.+.+++.+++++.|+++||+|||++++.+......+.+.....++ ++.+++
T Consensus 8 ~~~~~~lp~i~~~~~-~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~ 84 (368)
T TIGR00903 8 VTFSPVLSLVAEDID-VSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFN--YEWLLA 84 (368)
T ss_pred HHHHhhHHHHHHHhC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhcc--HHHHHH
Confidence 346788999999998 99999999999999999999999999999999999877665555554433333378 999999
Q ss_pred HHHHhhcchhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 115 SKICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 115 ~r~l~G~~~g~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
.|+++|++.+...+....++|++|+++|++++++.+.+..+|..+++.++..+ |||+.|++.++++++..++.+++
T Consensus 85 ~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 85 CQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987544667779999999999999999999999999999999888 99999999999888867777788
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHH
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVI 270 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
+||+|++..++ .+. + +..++..+ +++++..+...
T Consensus 165 lp~~p~~~~~~-------~~~---~------------------------------~~~~~~~~-ll~~~~~~~~~----- 198 (368)
T TIGR00903 165 LPALPFQAAEG-------FGF---K------------------------------DAVKEFGA-LAGRKDLWIIG----- 198 (368)
T ss_pred cCCCCCCCCCC-------cch---H------------------------------HHHHHHHH-HHcChhHHHHH-----
Confidence 99998642100 000 0 00011223 77776544322
Q ss_pred HHHHHhhcccchhhhcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCe---eehhh-hhhHHHHHHHHHh
Q psy8697 271 LFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRK---QLLIV-SAAGLGVSSILLS 346 (508)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr---~~l~~-~~~~~~~~~~~l~ 346 (508)
+..+......+.+..|.|.++++.|++.+..... .+..+.+.+..+++.||..|| +.... ...+.++....+.
T Consensus 199 ~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~---~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~ 275 (368)
T TIGR00903 199 AILGFGVALFDNLAIWLEAALRPAGLEDIAGDAV---ALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALA 275 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHH---HHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2233333346678899999998877764432233 333334444457888887654 32222 2333333332222
Q ss_pred hccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhh
Q psy8697 347 SNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVI 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (508)
. . ...+.......+. .++.....+.
T Consensus 276 -----------------~-~------------------------------------~~~~~~~~~~~l~-~~~~~~~~~~ 300 (368)
T TIGR00903 276 -----------------F-E------------------------------------LNRLALFAFIGIA-GLLMLPAYAI 300 (368)
T ss_pred -----------------H-c------------------------------------cccHHHHHHHHHH-HHhhhhhHHH
Confidence 1 0 0222222222222 2333333455
Q ss_pred hHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeE
Q psy8697 427 PWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 427 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~ 489 (508)
.+++.+|.+|++.||++.|+.+..+++++.++|.+.+.+.. +....|.++++..+++.+..+
T Consensus 301 ~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 301 IMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999988874 556677777777777766543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=278.04 Aligned_cols=372 Identities=17% Similarity=0.125 Sum_probs=265.4
Q ss_pred chhhHHHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHH
Q psy8697 16 KSCTYVRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYI 95 (508)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~ 95 (508)
|....+.+...+..++. .....+..|.+.++++ .++.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 14 ALTIGLCFLVALLEGLD-LQSAGVAAPRMAQEFG-LDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 33344444344333332 2334566788988887 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhH
Q psy8697 96 ISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWR 170 (508)
Q Consensus 96 i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr 170 (508)
++.++++++++ ++.+++.|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|..+++.++..+ +||
T Consensus 92 ~~~~~~~~~~~--~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 92 LFSLATAQAWD--FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 99999999999 99999999999999999999 999999999999999999999999999999999998766 899
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHH
Q psy8697 171 SLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKA 250 (508)
Q Consensus 171 ~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (508)
+.|++.+++.++..++...++||+|++..++ ++.++. +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~----------------------------------~~ 208 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAA-------GAGKQR----------------------------------AP 208 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHhcc-------Ccchhh----------------------------------hh
Confidence 9999988777775556667789987542111 000000 00
Q ss_pred HHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCee
Q psy8697 251 LWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQ 329 (508)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 329 (508)
..+..++++..++ ... .....+......+....|.|.++++.|.+... ........++.++++++.+++.||+|||+
T Consensus 209 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 286 (406)
T PRK11551 209 VLRALFGEGRATA-TLL-LWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR 286 (406)
T ss_pred hHHHHhhhhhhhH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0000111111111 111 11111112222445667889998887776544 46667777889999999999999999999
Q ss_pred ehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHH
Q psy8697 330 LLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSL 409 (508)
Q Consensus 330 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (508)
.+..+.....++.+.+. .. ...+...
T Consensus 287 ~~~~~~~~~~~~~~~~~-----------------~~-------------------------------------~~~~~~~ 312 (406)
T PRK11551 287 VVLLIYAGILASLAALA-----------------AA-------------------------------------PSFAGML 312 (406)
T ss_pred HHHHHHHHHHHHHHHHH-----------------hc-------------------------------------CcHHHHH
Confidence 88776666665555444 20 0222222
Q ss_pred HHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhhe
Q psy8697 410 LFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGF 487 (508)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~ 487 (508)
+...+.+ ....+..+...++..|.+|++.|+++.|+.+..+.+|..++|.+.|.+.+. ++...+.....+.+++.++
T Consensus 313 ~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 313 LAGFAAG-LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred HHHHHHH-HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence 2222222 222334556668899999999999999999999999999999999999987 3444455555444444444
Q ss_pred eE
Q psy8697 488 VY 489 (508)
Q Consensus 488 ~~ 489 (508)
.+
T Consensus 392 ~~ 393 (406)
T PRK11551 392 AL 393 (406)
T ss_pred HH
Confidence 33
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=273.18 Aligned_cols=345 Identities=16% Similarity=0.124 Sum_probs=257.5
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
..+.+|.+.++++ .++.+.|++.+.+.+++.+++++.|.++||+|||+++..+..+..+++++++++++ ++.++++|
T Consensus 28 ~~~~~~~l~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r 104 (390)
T PRK03545 28 PVGLLSDIAQSFH-MQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWN--FTVLLISR 104 (390)
T ss_pred HHcchHHHHhHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 3556899999988 99999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcC
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFA 191 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l 191 (508)
+++|++.+...+ ..+++.|++|+++|++++++...+.++|..++|.+++.+ +||+.|++.+++.++..+.....+
T Consensus 105 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~ 184 (390)
T PRK03545 105 IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLL 184 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999 999999999999999999999999999999999998876 999999999988887555555666
Q ss_pred CCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHH
Q psy8697 192 PESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVIL 271 (508)
Q Consensus 192 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (508)
||.|+. ++ ++ .++..+ .++++..+.......+.
T Consensus 185 ~~~~~~-----------~~-~~----------------------------------~~~~~~-~~~~~~~~~~~~~~~~~ 217 (390)
T PRK03545 185 PLLPSE-----------HS-GS----------------------------------LKSLPL-LFRRPALVSLYLLTVVV 217 (390)
T ss_pred CCCCCC-----------Cc-ch----------------------------------HHHHHH-HHhCcHHHHHHHHHHHH
Confidence 765320 00 00 001112 56666544322222111
Q ss_pred HHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcc
Q psy8697 272 FTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNL 349 (508)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~ 349 (508)
.. .......+.+.++++ .|.+.+. .......+++.++++++.+++.||++||.. ..+..+..++...+.
T Consensus 218 ~~-----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~--- 288 (390)
T PRK03545 218 VT-----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLL--- 288 (390)
T ss_pred HH-----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHH---
Confidence 11 122234566666666 5666554 456667788899999999999999998764 444444444443333
Q ss_pred ccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHh
Q psy8697 350 LMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWT 429 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (508)
... .+.+...+...+.+.+. ....+....
T Consensus 289 --------------~~~------------------------------------~~~~~~~~~~~l~g~~~-~~~~~~~~~ 317 (390)
T PRK03545 289 --------------PAA------------------------------------NSEWHLSVLSIFWGIAI-MCIGLAMQV 317 (390)
T ss_pred --------------HHh------------------------------------chHHHHHHHHHHHHHHH-hcchHHHHH
Confidence 110 12233333333333332 233344456
Q ss_pred hhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEe
Q psy8697 430 MISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYL 492 (508)
Q Consensus 430 ~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
.+.|..| +.|++++|+.+...++|..+||.+.|.+.|. |+...+...+++.+++.++.+...
T Consensus 318 ~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 318 KVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 7778776 5789999999999999999999999999999 999999998888888776655444
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=274.36 Aligned_cols=371 Identities=16% Similarity=0.169 Sum_probs=257.9
Q ss_pred chhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHH
Q psy8697 33 GLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELL 112 (508)
Q Consensus 33 ~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l 112 (508)
+.....+..|.++++++ .++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++ ++.+
T Consensus 33 ~~~~~~~~~~~i~~~~~-~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~l 109 (426)
T PRK12307 33 DFMLIFYIMYLIKADLG-LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG--VIML 109 (426)
T ss_pred HHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH--HHHH
Confidence 34445667888988888 99999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhh
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 187 (508)
+++|+++|++.+...+ ...++.|++|+++|+++.++...+..+|.++++.+...+ +||+.|++..+..++ .+..
T Consensus 110 ~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~ 188 (426)
T PRK12307 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYI 188 (426)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHH
Confidence 9999999999999999 999999999999999999999999999999999888766 899999886544433 3333
Q ss_pred hhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHH
Q psy8697 188 ICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLIL 267 (508)
Q Consensus 188 ~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (508)
....||++++..++ .+ .+++. .++ ..+.......+ .++++..+.....
T Consensus 189 ~~~~p~~~~~~~~~-------~~------------~~~~~----------~~~--~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (426)
T PRK12307 189 RARAPESKEWEEAK-------LS------------GKGKH----------SQS--AWSVFSLSMKG-LFNRAQFPLTLCV 236 (426)
T ss_pred HHHCCCChHHHHhh-------hh------------ccccc----------ccc--chhhhhHHHHH-HHhhchHHHHHHH
Confidence 33456654321110 00 00000 000 00000112233 6666654432222
Q ss_pred HHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHh
Q psy8697 268 LVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~ 346 (508)
.... +...........+.|.++++.|++.+. .......+++.++++++.+++.||++||+.+..+.++..+..+.+.
T Consensus 237 -~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 314 (426)
T PRK12307 237 -FIVL-FSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLF 314 (426)
T ss_pred -HHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 1111 122222334566888888887775544 3556677788999999999999999999988877766665554443
Q ss_pred hccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHH-HHhhcchh
Q psy8697 347 SNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVF-FSAVGVIV 425 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 425 (508)
.. . ...... .....++. +...+..+
T Consensus 315 -----------------~~-~-----------------------------------~~~~~~-~~~~~~~~~~~~~~~~~ 340 (426)
T PRK12307 315 -----------------RI-P-----------------------------------QDNYLL-LGACLFGLMATNVGVGG 340 (426)
T ss_pred -----------------HH-c-----------------------------------cccHHH-HHHHHHHHHHhcccHhH
Confidence 11 0 011111 11222222 22223334
Q ss_pred hhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchh-HHHHHHHHHHhhheeEEEeccC
Q psy8697 426 IPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGT-FNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 426 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
....++.|.+|++.||++.|+.+....+++.++|.+.|.+.+. ++... ++..+..+.+......+..|++
T Consensus 341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 341 LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 4457789999999999999999999999999999999999988 65543 3333333444434343445554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=268.22 Aligned_cols=363 Identities=15% Similarity=0.155 Sum_probs=252.2
Q ss_pred hchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHH
Q psy8697 32 SGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIEL 111 (508)
Q Consensus 32 ~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~ 111 (508)
.+.....+..|.++++++ .++.+.+++.+.+.++..+++++.|.++||+|||++++.+.++.+++.++++++++ ++.
T Consensus 26 ~~~~~~~~~~~~l~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~ 102 (405)
T TIGR00891 26 FDFFLVALVLAEVAGEFG-LTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPG--YIT 102 (405)
T ss_pred HHHHHHHHHHHHHHHHhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc--HHH
Confidence 344556777899999988 99999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----h--hHHHHHHHHHHHHHHH
Q psy8697 112 LYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----D--WRSLSYCFLALVLISG 184 (508)
Q Consensus 112 l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~--wr~~f~~~~~~~~~~~ 184 (508)
+++.|++.|++.+...+ ..+++.|++|+++|+++.++.+.+..+|..+++.++..+ + ||+.|++.+++.++ .
T Consensus 103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~-~ 181 (405)
T TIGR00891 103 MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF-A 181 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-H
Confidence 99999999999999999 999999999999999999999999999999999998876 4 99999987766665 5
Q ss_pred HhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchh
Q psy8697 185 LVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKP 264 (508)
Q Consensus 185 ~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (508)
++....+||++++..++ ++.++..+..++...++...... .++......+ . .+..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~--~~~~~~~ 239 (405)
T TIGR00891 182 LWLRKNIPEAEDWKEKH-------AGKALVRTMVDILYGGEHRIANI------------VMTLAAAMVQ-S--AGKRWPT 239 (405)
T ss_pred HHHHHhCCCChhHHHHh-------hhhhhhhhHHHHHhccchhhhhh------------hhhhhHHhhh-h--hhhhhHH
Confidence 55666788886543222 11111111111111100000000 0000000011 0 0111111
Q ss_pred HHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHH
Q psy8697 265 LILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSS 342 (508)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~ 342 (508)
.........+.... ......+.|.++.+ .|++.+. .......+++.++++++.+++.||+|||+.+..+..+..+..
T Consensus 240 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 318 (405)
T TIGR00891 240 FVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLI 318 (405)
T ss_pred HHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHH
Confidence 11122222221111 23445567777765 6776554 456677888899999999999999999998887766553333
Q ss_pred HHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhc
Q psy8697 343 ILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVG 422 (508)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (508)
.... .. . ...+...+...+.. +...+
T Consensus 319 ~~~~-----------------~~-~-----------------------------------~~~~~~~~~~~~~~-~~~~~ 344 (405)
T TIGR00891 319 IPVF-----------------AI-G-----------------------------------ANVAVLGLGLFFQQ-MLVQG 344 (405)
T ss_pred HHHH-----------------Hh-C-----------------------------------CchHHHHHHHHHHH-HHHcc
Confidence 3222 11 0 02222222222222 23333
Q ss_pred chhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c-cchhHH
Q psy8697 423 VIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S-VIGTFN 475 (508)
Q Consensus 423 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~~~~~ 475 (508)
..+....++.|.+|++.|+++.|+.+...+++..++|.+.|.+.|. | +...+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~ 399 (405)
T TIGR00891 345 IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALA 399 (405)
T ss_pred chhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 4455568889999999999999999999999999999999999998 6 654443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=270.71 Aligned_cols=370 Identities=16% Similarity=0.175 Sum_probs=240.1
Q ss_pred hhhhhhhchhhhHHHHhhhccccc--ccCCccch---hHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHH
Q psy8697 26 MYTQRWSGLFYYLVYLKYLTRHYI--VMFGSHFG---PTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLL 100 (508)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~i~~~~~--~~s~~~~g---~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l 100 (508)
+....+.+...+....|.+.++++ +.+..+.+ .+.+...++..++++++|+++||+|||+++..+.+++++++++
T Consensus 30 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~ 109 (432)
T PRK10406 30 GNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLV 109 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 334455556667777888888875 23444333 3445556666699999999999999999999999999999999
Q ss_pred HHhcCCcchH--------HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHh-----
Q psy8697 101 TILADPGNIE--------LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY----- 166 (508)
Q Consensus 101 ~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~----- 166 (508)
++++++ +. .+++.|+++|++.|...+ ..++++|++|+++|+++.++.+.+...|.++++.+...
T Consensus 110 ~~~~~~--~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 187 (432)
T PRK10406 110 IACLPG--YETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTL 187 (432)
T ss_pred HhhcCC--chhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998 64 589999999999999999 99999999999999999999988888888887765432
Q ss_pred -------hhhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhh
Q psy8697 167 -------LDWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVR 239 (508)
Q Consensus 167 -------l~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (508)
.|||++|++.+++.++ .+.....+||+|++..++ .
T Consensus 188 ~~~~~~~~gWr~~F~i~~~~~ll-~~~~~~~~~e~~~~~~~~-------------~------------------------ 229 (432)
T PRK10406 188 EDAELREWGWRIPFALGAVLAVV-ALWLRRQLDETSQQETRA-------------L------------------------ 229 (432)
T ss_pred CHHHHhccchHHHHHHHHHHHHH-HHHHHhcCCCCchHHHhh-------------h------------------------
Confidence 2899999998888776 555556678875421000 0
Q ss_pred hhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHH
Q psy8697 240 TRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVV 317 (508)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~ 317 (508)
+ +..+..+ ++++++.+. ............++.+..|.|.++++ .|++.+. ........+...++..+
T Consensus 230 ----~--~~~~~~~-l~~~~~~~~----~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~ 298 (432)
T PRK10406 230 ----K--EAGSLKG-LWRNRRAFI----MVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPL 298 (432)
T ss_pred ----c--ccccHHH-HHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011122 555442221 11111222122355677889998876 5776544 34455556667778888
Q ss_pred HHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccc
Q psy8697 318 TTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCV 397 (508)
Q Consensus 318 ~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
.|+++||++||+.+..+..+.++....+. .....
T Consensus 299 ~G~l~Dr~grr~~~~~~~~~~~~~~~~~~-----------------~~~~~----------------------------- 332 (432)
T PRK10406 299 IGALSDKIGRRTSMLCFGSLAALFTVPIL-----------------SALQN----------------------------- 332 (432)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHH-----------------HHHHc-----------------------------
Confidence 99999999999877665554433332222 10000
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHH-HHHHHHHHhHHHhhhc-cchhHH
Q psy8697 398 DHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYV-CMFFMVKAFPFAIHSS-VIGTFN 475 (508)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~i~~~~~g~l~~~g-~~~~~~ 475 (508)
....+.......+.....+. ..+..+.+.+|.+|++.|+++.|+.+..++. .+...|.+.+.+.+.| +...++
T Consensus 333 ----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~ 407 (432)
T PRK10406 333 ----VSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFW 407 (432)
T ss_pred ----CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHH
Confidence 00112222112111111111 2234557889999999999999999988775 3445777777554334 444455
Q ss_pred HHHHHHHHhhheeEEEeccCCCCC
Q psy8697 476 VFGLVSFTLVGFVYFYLPETKGKT 499 (508)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
..+++.+++.+..++ .++++|+
T Consensus 408 ~~~~~~~i~~~~~~~--l~~~~~~ 429 (432)
T PRK10406 408 YVTLMAVVAFLVSLM--LHRKGKG 429 (432)
T ss_pred HHHHHHHHHHHHHHH--hhhcccc
Confidence 555555555444433 3344544
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=249.92 Aligned_cols=392 Identities=17% Similarity=0.182 Sum_probs=296.3
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKI 117 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~ 117 (508)
.-+.|.+.+.++ .+..|..++....+.|..+++..+|.++|++|||+.+.+......+...+.+.++| +..+++.|.
T Consensus 98 s~i~~~l~~~w~-~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn--f~~L~~f~~ 174 (528)
T KOG0253|consen 98 SLILPALDEVWG-PSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN--FASLCVFRA 174 (528)
T ss_pred HHHHHHHHhhhc-hhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC--eehhhHHHH
Confidence 344577777777 89999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCC
Q psy8697 118 CAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 118 l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~ 192 (508)
+.|+|.|+ .| ..++-.|..|..+|+..+-.. ..+.+|.+....++... ||||.......+..+ +....+++|
T Consensus 175 l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~-~a~f~~w~~ 251 (528)
T KOG0253|consen 175 LWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF-AARFLVWVY 251 (528)
T ss_pred HHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH-HHHHHhhcc
Confidence 99999999 77 889999999999999888777 88999999998888766 999999888876666 778888999
Q ss_pred CCchhhhhcccccchhhhHHHHHHHHHHHhCChhh-------hHHHHHHHHHh-----hhhhhhhhhhHHHHHHHhcCcc
Q psy8697 193 ESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEI-------FEKEWRVLCQV-----RTRYDETRNKKALWRQILTTRE 260 (508)
Q Consensus 193 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 260 (508)
||||+...+ ++++++.+.++++...+.. +....++.+++ +.+.+..+....-.. .+-.|+
T Consensus 252 ESpRf~~~~-------G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~-nLlsp~ 323 (528)
T KOG0253|consen 252 ESPRFYLAK-------GDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTT-NLLSPK 323 (528)
T ss_pred cCcchhhhc-------CChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchH-hhcChH
Confidence 999999999 9999998888776542110 00000000000 001111112222222 344566
Q ss_pred cchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhC--------------------Cc-chhhHHHHHHHHHHHHHHHHHH
Q psy8697 261 CYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVG--------------------TE-IDESHALVFLGIIRFGMSVVTT 319 (508)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~~-~~~~~~~~~~~~~~~~~~~~~~ 319 (508)
.++..+.....++...+. +++.......+++... .. ...+.-..+..+..++|.++.+
T Consensus 324 lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~ 402 (528)
T KOG0253|consen 324 LRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITG 402 (528)
T ss_pred HHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHH
Confidence 777777777666654444 3333333333332211 11 1123556778899999999999
Q ss_pred HhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccC
Q psy8697 320 VLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDH 399 (508)
Q Consensus 320 ~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
+++||+|||+.+...+++.++..+.+. .+.
T Consensus 403 ~iverlGRKkTMal~l~~f~iflfll~-----------------~c~--------------------------------- 432 (528)
T KOG0253|consen 403 VIVERLGRKKTMALSLILFGIFLFLLT-----------------TCK--------------------------------- 432 (528)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHH-----------------Hhc---------------------------------
Confidence 999999999999999999999888887 422
Q ss_pred CCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHH
Q psy8697 400 SSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGL 479 (508)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~ 479 (508)
......+..+..-++...++ ...++|..|++|+..|+++.|.++..+.+|+++.|.+. ...+.....+..++++
T Consensus 433 ----~rn~~tvllf~arafisg~f-qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~ 506 (528)
T KOG0253|consen 433 ----TRNAYTVLLFTARAFISGAF-QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGA 506 (528)
T ss_pred ----CcchhHHHHHHHHHHHhchh-eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHH
Confidence 22333344444444444444 55579999999999999999999999999999999998 4444466778889999
Q ss_pred HHHHhhheeEEEeccCCCCCh
Q psy8697 480 VSFTLVGFVYFYLPETKGKTF 500 (508)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~ 500 (508)
+++++.+.+.++--|||+|++
T Consensus 507 ~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 507 LFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHHHHHHheeeeeccCCCCC
Confidence 999998888888889999874
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=266.96 Aligned_cols=348 Identities=15% Similarity=0.092 Sum_probs=256.5
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
...+..|.+.++++ .++.+.|++.+++.++..+++++.|+++||+|||+++..+..+.+++.++++++++ ++.++++
T Consensus 21 ~~~~~~~~~~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 97 (377)
T TIGR00890 21 TWTLLAPPLGRYFG-VGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS--LAALYLT 97 (377)
T ss_pred hhhhHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 34677899999988 99999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
|++.|++.+...+ ...++.|++| ++|+++.++...+.++|..+++.+...+ +||+.|++.+++.++..+...++
T Consensus 98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888 8888999886 6799999999999999988765555444 89999999999888856666666
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHH
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVI 270 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
++|+|+...++ +. + .+++.+...+ .++++..+........
T Consensus 177 ~~~~~~~~~~~--------~~-~------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~ 216 (377)
T TIGR00890 177 IGYPPGQLIKT--------NI-E------------------------------VSVKDYTVWE-MLRTPQFWVLYLSFFL 216 (377)
T ss_pred eecCchhcccc--------Cc-c------------------------------cchhhhhHHH-HHcCccHHHHHHHHHH
Confidence 66654210000 00 0 0000111223 5666554332211111
Q ss_pred HHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcc
Q psy8697 271 LFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNL 349 (508)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~ 349 (508)
.. ........+.+.+.++.|.+.+. ........+..++++++.+++.||++||+.+..+..+..++.+.+.
T Consensus 217 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--- 288 (377)
T TIGR00890 217 -NA----VSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML--- 288 (377)
T ss_pred -Hh----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH---
Confidence 11 11222334555566666665443 3566778888999999999999999999998888888877776665
Q ss_pred ccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHh
Q psy8697 350 LMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWT 429 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (508)
.... ...+.......+.....+. ..+....
T Consensus 289 --------------~~~~-----------------------------------~~~~~~~~~~~~~g~~~g~-~~~~~~~ 318 (377)
T TIGR00890 289 --------------FIPM-----------------------------------LNDVLFLATVALVFFTWGG-TISLFPS 318 (377)
T ss_pred --------------Hccc-----------------------------------chhHHHHHHHHHHHHHhcc-chhccHH
Confidence 3110 0111121222222222222 2334457
Q ss_pred hhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhh
Q psy8697 430 MISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLV 485 (508)
Q Consensus 430 ~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 485 (508)
++.|.+|+++|+++.|+.+....+|..++|.+.|.+.+. |+...|.+.+++.+++.
T Consensus 319 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 319 LVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999999998 99988888887777654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-31 Score=268.51 Aligned_cols=369 Identities=19% Similarity=0.178 Sum_probs=243.7
Q ss_pred hhhchhhhHHHHhh-hcccc-cccCCccchhHH-----HHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHH
Q psy8697 30 RWSGLFYYLVYLKY-LTRHY-IVMFGSHFGPTT-----SFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTI 102 (508)
Q Consensus 30 ~~~~~~~~~~~~~~-i~~~~-~~~s~~~~g~~~-----s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~ 102 (508)
.+.+...+....|. +.+++ .+.++. .+++. ++.+++..+++++.|+++||+|||++++.+..++++++++++
T Consensus 34 ~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~ 112 (438)
T PRK09952 34 DWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIG 112 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHh
Confidence 44444444544543 44443 235555 45553 355677889999999999999999999999999999999999
Q ss_pred hcCCcchH--------HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHh-------
Q psy8697 103 LADPGNIE--------LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY------- 166 (508)
Q Consensus 103 ~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~------- 166 (508)
++++ ++ .++++|+++|++.|...+ ...++.|++|+++|++..+..+.+..+|.+++..+...
T Consensus 113 ~~~~--~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~ 190 (438)
T PRK09952 113 LLPS--FSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTD 190 (438)
T ss_pred cCCc--HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 9999 87 588999999999999999 99999999999999999999999999999988765542
Q ss_pred -----hhhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhh
Q psy8697 167 -----LDWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTR 241 (508)
Q Consensus 167 -----l~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (508)
.+||.+|++.+++.++ .+......||+|+|...+ ++.++.
T Consensus 191 ~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~~~~~~~-------~~~~~~--------------------------- 235 (438)
T PRK09952 191 EQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESAEFEQQQ-------HEQAAA--------------------------- 235 (438)
T ss_pred HHhhccChHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHH-------hhcccc---------------------------
Confidence 2899999998887665 555556788987653222 000000
Q ss_pred hhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhh-HHHHHHHHHHHHHHHHHH
Q psy8697 242 YDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDES-HALVFLGIIRFGMSVVTT 319 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~ 319 (508)
+ .+.+..+..+++++.+.. ..... +.+....+....|.|.++++ .|++.+.. ......++..+++.++.|
T Consensus 236 ---~-~~~~~~~~l~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g 307 (438)
T PRK09952 236 ---K-KRIPVIEALLRHPGAFLK---IIALR-LCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFA 307 (438)
T ss_pred ---c-ccCCHHHHHHHchHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000111113333332221 11111 12222345566788888765 56554432 344456677788889999
Q ss_pred HhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccC
Q psy8697 320 VLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDH 399 (508)
Q Consensus 320 ~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
+++||+|||+.+..+.++..++.+.+. ......
T Consensus 308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~-----------------~~~~~~------------------------------ 340 (438)
T PRK09952 308 WLADRFGRRRVYITGALIGTLSAFPFF-----------------MALEAQ------------------------------ 340 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHH-----------------HHHHcC------------------------------
Confidence 999999999988777665554443332 111000
Q ss_pred CCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHH-HHHHHHHHHhHHHhhh---ccchhHH
Q psy8697 400 SSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGY-VCMFFMVKAFPFAIHS---SVIGTFN 475 (508)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~i~~~~~g~l~~~---g~~~~~~ 475 (508)
...+.......+...+.+. ..+..++++.|.+|++.|+++.|+.+..+. +++.++|.+.+.+.+. ++...+.
T Consensus 341 ---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~ 416 (438)
T PRK09952 341 ---SIFWIVFFSIMLANIAHDM-VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAI 416 (438)
T ss_pred ---ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 0112222222222222222 244456899999999999999999776654 8999999999999885 3556666
Q ss_pred HHHHHHHHhhheeEEEeccCC
Q psy8697 476 VFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~ 496 (508)
..+++.+++.+..+ ..+|++
T Consensus 417 ~~~~~~~i~~v~~~-~~~~~~ 436 (438)
T PRK09952 417 YLLAGCLISAMTAL-LMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHHH-Hccccc
Confidence 66666666655543 345543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=267.27 Aligned_cols=350 Identities=13% Similarity=0.082 Sum_probs=257.2
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
..|.+|.+++|++ .|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.++++++++ ++.++++|
T Consensus 28 ~~~~lp~i~~~~~-~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~--~~~ll~~r 104 (393)
T PRK09705 28 VGPLLPQLRQASG-MSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ--SALLLSSA 104 (393)
T ss_pred cchhHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc--hHHHHHHH
Confidence 4678999999998 99999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
+++|++.+...+ ...++.|++| ++|+++++++..+..+|..+++.++..+ +||..+.+.++..++ .++.++.
T Consensus 105 ~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~-~~~~~~~ 182 (393)
T PRK09705 105 LLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV-ALFAWWW 182 (393)
T ss_pred HHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999 9999999986 7899999999988888888888877765 799988776666554 3333322
Q ss_pred C-CCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHH
Q psy8697 191 A-PESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLV 269 (508)
Q Consensus 191 l-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (508)
. ++.|+ ++.+ ++ ....+ .+++++.+. ..
T Consensus 183 ~~~~~~~------------~~~~-------------------------------~~---~~~~~-~l~~~~~~~----l~ 211 (393)
T PRK09705 183 QSAREVA------------SSHK-------------------------------TT---TTPVR-VVFTPRAWT----LG 211 (393)
T ss_pred HhcCCCc------------cccC-------------------------------CC---cCCcc-cccCHhHHH----HH
Confidence 2 22111 0000 00 00011 333333222 11
Q ss_pred HHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhc
Q psy8697 270 ILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSN 348 (508)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~ 348 (508)
. .......++.....|.|.++++.|.+.+. .....+.+++.++++++.+++.||++||+....+..+..++...+.
T Consensus 212 ~-~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~-- 288 (393)
T PRK09705 212 V-YFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFI-- 288 (393)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH--
Confidence 1 11112223556778899999887776654 4677788899999999999999999999988888777766665544
Q ss_pred cccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhH
Q psy8697 349 LLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPW 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (508)
.... ..... ...+.+.+.+ ...+...
T Consensus 289 ---------------~~~~------------------------------------~~~~~--~~~l~g~g~g-~~~~~~~ 314 (393)
T PRK09705 289 ---------------WLPL------------------------------------QLPVL--WAMVCGLGLG-GAFPLCL 314 (393)
T ss_pred ---------------Hccc------------------------------------hHHHH--HHHHHHHhcc-chHHHHH
Confidence 2100 11111 1222222222 2334444
Q ss_pred hhhhccC-cccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c-cchhHHHHHHHHHHhhheeEEEeccCCCCC
Q psy8697 429 TMISELL-PSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S-VIGTFNVFGLVSFTLVGFVYFYLPETKGKT 499 (508)
Q Consensus 429 ~~~~e~~-p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
....+.. |++.+++..|+.+..++++..++|.+.|++.|. | +...|.+.+.+.++..++.+.+.|||++|.
T Consensus 315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 4555665 467899999999999999999999999999998 4 666677777777777677677888887764
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=272.22 Aligned_cols=378 Identities=16% Similarity=0.115 Sum_probs=263.8
Q ss_pred hhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchH
Q psy8697 31 WSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIE 110 (508)
Q Consensus 31 ~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~ 110 (508)
+.+...+.+..|.+.++++ .++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.+++++ ++
T Consensus 7 ~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--~~ 83 (399)
T TIGR00893 7 YLDRANLSFAAPMLQEDLG-LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA--YV 83 (399)
T ss_pred HHHHHhhhHhHHHHHHhhC-CChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC--HH
Confidence 3334445666888888888 99999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q psy8697 111 LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGL 185 (508)
Q Consensus 111 ~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~ 185 (508)
.++++|++.|++.+...+ ...++.|++|+++|++++++.+....+|.++++.+++.+ +||+.|++.+++.++..+
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999876 899999999888887566
Q ss_pred hhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhH
Q psy8697 186 VLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPL 265 (508)
Q Consensus 186 ~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (508)
+..+..||+|+..... ++++.....+.... +.++++++++......+ .+++++.+..
T Consensus 164 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 220 (399)
T TIGR00893 164 LWLKFIPDPPQKAKWL--------TEEEKYIVVGGLLA-------------EQQGKGPSTPKKYQIKE-LLKDRRVWGL- 220 (399)
T ss_pred HhhheecCCCCccccC--------CHHHHhhcchhhcc-------------ccccccccCCCccchHH-HhcCHHHHHH-
Confidence 6666777765421100 00000000000000 00000111112223333 6666543332
Q ss_pred HHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhh-hhhHHHHHH
Q psy8697 266 ILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIV-SAAGLGVSS 342 (508)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~-~~~~~~~~~ 342 (508)
.+..+...........+.|.++++ .|.+... ........+..+++.++.+++.||++||+.... ......++.
T Consensus 221 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 221 ----ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG 296 (399)
T ss_pred ----HHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 222222223345667788888876 5665444 466677788889999999999999999862211 111111111
Q ss_pred HHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhc
Q psy8697 343 ILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVG 422 (508)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (508)
+.....+ ..... ............. .+...+
T Consensus 297 ~~~~~~~--------------~~~~~----------------------------------~~~~~~~~~~~~~-~~~~~~ 327 (399)
T TIGR00893 297 LVLSLLM--------------FATNY----------------------------------VNIPYAALALVAL-GFFGLG 327 (399)
T ss_pred HHHHHHH--------------HHhcc----------------------------------chhHHHHHHHHHH-HHhchh
Confidence 1111000 00000 0111222222222 223333
Q ss_pred chhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c-cchhHHHHHHHHHHhhhe
Q psy8697 423 VIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S-VIGTFNVFGLVSFTLVGF 487 (508)
Q Consensus 423 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~~~~~~~~~~~~~~~~~ 487 (508)
..+..+++..|.+|++.|+++.|+.+...++|+.++|.+.|.+.+. + +...+.+.+++.+++.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 5677789999999999999999999999999999999999999998 7 888888877777766544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=268.65 Aligned_cols=371 Identities=14% Similarity=0.134 Sum_probs=248.1
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC----CcchHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD----PGNIELL 112 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~----~~~~~~l 112 (508)
..+.+|++.++ + .++.+.|++.+...+++.+++++.|+++||+|||++++.+.++.+++.+++++++ + ++.+
T Consensus 48 ~~~~~p~l~~~-g-~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~ 123 (452)
T PRK11273 48 FALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--IAVM 123 (452)
T ss_pred HHHhhHHHHHc-C-CCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccccc--HHHH
Confidence 34567888766 5 9999999999999999999999999999999999999999999999999888764 5 8889
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHH-HHHHHHHhh----hhHHHHHHHHHHHHHHHHh
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGIL-LTTILNLYL----DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~-~g~~l~~~l----~wr~~f~~~~~~~~~~~~~ 186 (508)
++.|++.|++.+...+ ....+.|++|+++|++++++++.+.++|.. .+++++..+ +||+.|++.+++.++..++
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 888999999999999999999999998864 455543322 9999999998888876677
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
..+++||+|+....+ + .++.++ +.++ +.+++++ ++.+..+...+..++++..|...+
T Consensus 204 ~~~~~~~~~~~~~~~-------~-~~~~~~------~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 260 (452)
T PRK11273 204 AFAMMRDTPQSCGLP-------P-IEEYKN------DYPD-------DYNEKHE--QELTAKQIFMQYVLPNKLLWYIAI 260 (452)
T ss_pred HHHHccCCHhhcCCC-------C-hhhhhh------cccc-------ccccccC--CCccHHHHHHHHHHcChHHHHHHH
Confidence 778889987532111 0 000000 0000 0000000 000011111222455554333222
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhccc--CCeeehh-hhhhHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGF--GRKQLLI-VSAAGLGVS 341 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~-~~~~~~~~~ 341 (508)
...+.. ...+....|.|.++++ .|++... ........++.+++.++.|+++||+ +||.... ....+..++
T Consensus 261 ~~~~~~-----~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~ 335 (452)
T PRK11273 261 ANVFVY-----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 335 (452)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 222211 2245567899999987 5776544 3556677788889999999999999 4444322 222222222
Q ss_pred HHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhh
Q psy8697 342 SILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAV 421 (508)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
.+.+. . ... ...+...+.+...+.. ..
T Consensus 336 ~~~~~-----------------~-~~~----------------------------------~~~~~~~~~~~~~g~~-~~ 362 (452)
T PRK11273 336 TIVYW-----------------L-NPA----------------------------------GNPTVDMACMIVIGFL-IY 362 (452)
T ss_pred HHHHH-----------------H-hcc----------------------------------cChHHHHHHHHHHHHH-HH
Confidence 22222 1 000 0122222222222221 11
Q ss_pred cchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHH-HHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEe
Q psy8697 422 GVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFF-MVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYL 492 (508)
Q Consensus 422 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i-~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
+.......+..|.+|++.||++.|+.+...++|+.+ +|.+.|.+.|. |+...|.+.+++++++.+....+.
T Consensus 363 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 363 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 222223356789999999999999999999998765 79999999999 999999888887777765555433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-30 Score=263.34 Aligned_cols=349 Identities=17% Similarity=0.228 Sum_probs=228.5
Q ss_pred HHHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHH-HHH-----HHHHhhhhhchhhhhhcccchhHHHHHHHH
Q psy8697 20 YVRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTT-SFV-----IITSPVGSTVIGPIMDYIGRKWSLILVCVP 93 (508)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~-s~~-----~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~ 93 (508)
......+....+.+.....+..|.+.++++ .++.+.+.+. +.. .++..+++++.|+++||+|||++++.+..+
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFF-PAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 334444555566666677888999999987 7777765443 322 333357899999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchH--------HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy8697 94 YIISSLLTILADPGNIE--------LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILN 164 (508)
Q Consensus 94 ~~i~~~l~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~ 164 (508)
+.+++++++++++ ++ .++++|+++|++.+...+ ...+++|++|+++|++++++.+.+.++|..+++.++
T Consensus 96 ~~~~~~l~~~~~~--~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g 173 (434)
T PRK15075 96 MASGTLLIAFVPG--YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG 173 (434)
T ss_pred HHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 77 468999999999999999 999999999999999999999888777777766665
Q ss_pred Hhh------------hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHH
Q psy8697 165 LYL------------DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEW 232 (508)
Q Consensus 165 ~~l------------~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (508)
..+ |||++|++..+...+ ........||++++..++ +
T Consensus 174 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~-------------~----------------- 222 (434)
T PRK15075 174 YLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-IFLIRRSLEETEEFLARK-------------H----------------- 222 (434)
T ss_pred HHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHhh-------------h-----------------
Confidence 542 899999875543322 222222334432110000 0
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhh-HHHHHHHHH
Q psy8697 233 RVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDES-HALVFLGII 310 (508)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~ 310 (508)
+.+.+..++...+++ +....... ..+.+....+....|.|.++++ .|++.+.. ......+++
T Consensus 223 ------------~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~ 286 (434)
T PRK15075 223 ------------RPSMREIFRSLAANW---RIVLAGML-MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVS 286 (434)
T ss_pred ------------ccccccHHHHHHHhH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 000001111012221 11112122 2222333356678899999987 67765553 556667788
Q ss_pred HHHHHHHHHHhhcccCCeeehhhhhhHHHHHHH-HHhhccccccccccccccCccccccCCcccccccccccccCCCCCC
Q psy8697 311 RFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSI-LLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPS 389 (508)
Q Consensus 311 ~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (508)
.++++++.|+++||+|||+.+..+..+..+... .+. .....
T Consensus 287 ~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-----------------~~~~~--------------------- 328 (434)
T PRK15075 287 NFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS-----------------WLVAA--------------------- 328 (434)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-----------------HHHcC---------------------
Confidence 889999999999999999987765544332221 111 00000
Q ss_pred CCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHH-HHHHHHHHhHHHhhh
Q psy8697 390 AFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYV-CMFFMVKAFPFAIHS 468 (508)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~i~~~~~g~l~~~ 468 (508)
...........+...+.+ ...+..+.+..|.+|++.|+++.++.+..+.. ++.++|.+.|.+.|.
T Consensus 329 -------------~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 329 -------------PSFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred -------------CchHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 011111111222222222 23344457889999999999999997666654 588899999999998
Q ss_pred -cc
Q psy8697 469 -SV 470 (508)
Q Consensus 469 -g~ 470 (508)
|+
T Consensus 395 ~g~ 397 (434)
T PRK15075 395 TGD 397 (434)
T ss_pred cCC
Confidence 64
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-30 Score=270.46 Aligned_cols=381 Identities=22% Similarity=0.296 Sum_probs=280.7
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-H
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-A 129 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~ 129 (508)
.+.....+..+++++|..+|++++|+++||+|||++++.+.++..++.++.++++| ++.+++.|++.|++.+.... .
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~--~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN--YWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHhhccchhHHh
Confidence 67778889999999999999999999999999999999999999999999999999 99999999999999999999 9
Q ss_pred HHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccch
Q psy8697 130 MVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL--DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANV 207 (508)
Q Consensus 130 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~ 207 (508)
..+++|++++++|+.+..+ ......|..+++.+++++ +||+.+++..++.++ .++.+++.||||||+..+
T Consensus 193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~-~~~~~~l~~Es~rwl~~~------ 264 (521)
T KOG0255|consen 193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGL-FLLLWFLPPESPRWLLSK------ 264 (521)
T ss_pred HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHccCcChHHHHHc------
Confidence 9999999999999999999 666666666666666666 899999999999998 555577777999999999
Q ss_pred hhhHHHHHHHHHHHhCCh---hhhHHHHHHH-HHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchh
Q psy8697 208 NKRMAKAEKSLKFLNRNP---EIFEKEWRVL-CQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPV 283 (508)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (508)
++.+++.+.+++....+ ...++..+.. ...+++....+++....+ .++.++.++..+.....++. ...
T Consensus 265 -g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~l~~~~~~~~~~~~~------~~~ 336 (521)
T KOG0255|consen 265 -GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLD-LFRTPRLRYRTLYLLFIWFV------FSL 336 (521)
T ss_pred -CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhh-hhcCHHHHHHHHHHHHHHHH------HhH
Confidence 88888887777764321 1111111111 111111111122234555 88887766666665555532 222
Q ss_pred hhcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCc
Q psy8697 284 IFYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSN 363 (508)
Q Consensus 284 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 363 (508)
.+|.-.+. ..+++.+......+.+.....+....+...|+.|||.....+..+..++++..+
T Consensus 337 ~y~gl~~~-~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~----------------- 398 (521)
T KOG0255|consen 337 VYYGLSLN-VSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFG----------------- 398 (521)
T ss_pred HHHhhhhh-hhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-----------------
Confidence 22322222 223455666666677778888888889999999999999999999999998888
Q ss_pred cccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhH
Q psy8697 364 EYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVC 443 (508)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 443 (508)
+..... ..+...+...+..++.+.+.... +.+.+|++|+..|..+
T Consensus 399 ~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~ 443 (521)
T KOG0255|consen 399 WLPDDL----------------------------------GGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTA 443 (521)
T ss_pred Hhhccc----------------------------------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHH
Confidence 432210 11233333333444444545444 7999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeEEEeccCCCCChHH
Q psy8697 444 SGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVE 502 (508)
Q Consensus 444 ~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (508)
.+..+....++++++|.+............+.+++....+...+..+++|||+++.+.+
T Consensus 444 ~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~ 502 (521)
T KOG0255|consen 444 VGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPG 502 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence 99999999999999998875555442222333356666666666667899999987644
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=257.32 Aligned_cols=347 Identities=12% Similarity=0.066 Sum_probs=249.1
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
...+.+|.++++++ .+.++.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++.++++++++ ++.+++.
T Consensus 21 ~~~~~l~~~~~~~g-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~--~~~l~~~ 97 (382)
T PRK10091 21 GIMGVLTELAHDVG-ISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS--YLMLAIG 97 (382)
T ss_pred HHHhChHHHHHHcC-CCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHH
Confidence 44667899999988 89999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
|++.|++.+...+ ...++.|+.++++|++++++...+..+|..+++.+++.+ +||+.|++.+++.++..+...+.
T Consensus 98 r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~ 177 (382)
T PRK10091 98 RLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFW 177 (382)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 899999999999999999999999999999999988777 89999999998887755555667
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHH
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVI 270 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
+||.++ + .+.+ .+..++ .++++..+... .
T Consensus 178 lp~~~~----~-------~~~~-----------------------------------~~~~~~-~~~~~~~~~~~----~ 206 (382)
T PRK10091 178 VPDIRD----E-------AKGG-----------------------------------LREQFH-FLRSPAPWLIF----A 206 (382)
T ss_pred CCCCCc----c-------cccC-----------------------------------HHHHHH-HhcChHHHHHH----H
Confidence 887532 0 0000 000112 33333322211 1
Q ss_pred HHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhc
Q psy8697 271 LFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSN 348 (508)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~ 348 (508)
... ....+......|.+.++.+ .|.+.+. .......+++.++++++.+++.||+++|+.+..+..+.+++.+.+.
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~-- 283 (382)
T PRK10091 207 ATM-FGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLF-- 283 (382)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHH--
Confidence 111 1111122334455656655 6776554 4667778888999999999999999999998888877777765554
Q ss_pred cccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhH
Q psy8697 349 LLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPW 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (508)
.... ..+...+...+...+......+...
T Consensus 284 ---------------~~~~------------------------------------~~~~~~~~~~~~~~g~~~~~~~~~~ 312 (382)
T PRK10091 284 ---------------FFGG------------------------------------MKTASLIFAFICCAGLFALSAPLQI 312 (382)
T ss_pred ---------------HHHh------------------------------------hHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2110 2222223222232222222223332
Q ss_pred hhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhheeEEEe
Q psy8697 429 TMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGFVYFYL 492 (508)
Q Consensus 429 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
....+..|.+.++.+ ..+....+|+.+||.+.|.+.|. ++...+.+.++++.+.......+.
T Consensus 313 ~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 313 LLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred HHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555544 44677899999999999999995 788888877766666554444333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=264.70 Aligned_cols=365 Identities=14% Similarity=0.035 Sum_probs=268.5
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh-----cCCcchHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL-----ADPGNIEL 111 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~-----~~~~~~~~ 111 (508)
..+.+|.+.++.+ .++.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++.+. .++ ++.
T Consensus 36 ~~~~~~~~~~~~~-~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 112 (417)
T PRK10489 36 LGVAVPVQIQMMT-GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPS--LLA 112 (417)
T ss_pred HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCc--HHH
Confidence 3556777777777 68899999999999999999999999999999999999988888777665542 456 899
Q ss_pred HHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHh
Q psy8697 112 LYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 112 l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~ 186 (508)
+++.|++.|++.+...+ ..+++.|+.|+++|+++.++.+...++|..+|+.+++.+ +||+.|++.++..++ ..+
T Consensus 113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~-~~~ 191 (417)
T PRK10489 113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFI-TLL 191 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHH
Confidence 99999999999998888 899999999999999999999999999999999999877 899999988877776 455
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
..+.+||+++.. + ++.++ . ++..+. ++..++++..+...+
T Consensus 192 ~~~~l~~~~~~~--~-------~~~~~-~-----------------------------~~~~~~-~~~~~~~~~~~~~~~ 231 (417)
T PRK10489 192 PLLRLPALPPPP--Q-------PREHP-L-----------------------------RSLLAG-FRFLLASPVVGGIAL 231 (417)
T ss_pred HHHhCCCCCCCC--c-------ccccc-h-----------------------------HHHHHH-HHHHHcChHHHHHHH
Confidence 556677754311 0 00000 0 000011 111445554332221
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSIL 344 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~ 344 (508)
.. ..... ......+.|.+.++ .|.+... .......+++.+++.++.+++.||.++++.+..+..+.+++.+.
T Consensus 232 ~~-~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 305 (417)
T PRK10489 232 LG-GLLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGL 305 (417)
T ss_pred HH-HHHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHH
Confidence 11 11111 23455678888888 6776544 45666777888999999999999977777777777777766665
Q ss_pred HhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcch
Q psy8697 345 LSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVI 424 (508)
Q Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (508)
+. .. .+.+...+...+++.+.+ ...
T Consensus 306 ~~-----------------~~-------------------------------------~~~~~~~~~~~~~g~~~~-~~~ 330 (417)
T PRK10489 306 FG-----------------LM-------------------------------------PMWILAVLCLALFGYLSA-ISS 330 (417)
T ss_pred HH-----------------cc-------------------------------------chHHHHHHHHHHHHHHHH-HHH
Confidence 55 20 022222233333333222 223
Q ss_pred hhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCCChHHH
Q psy8697 425 VIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEI 503 (508)
Q Consensus 425 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (508)
+...+++.|..|++.||++.|+.+...++|..+++.+.|.+.+. |....+...+++.++..++.+...+++|+++.||+
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45557889999999999999999999999999999999999998 88888888888777777777777899999999888
Q ss_pred Hhh
Q psy8697 504 EKY 506 (508)
Q Consensus 504 ~~~ 506 (508)
+++
T Consensus 411 ~~~ 413 (417)
T PRK10489 411 EVD 413 (417)
T ss_pred cCC
Confidence 764
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=252.27 Aligned_cols=340 Identities=16% Similarity=0.189 Sum_probs=246.0
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
...+.+|.+.++++ .++++.|+..+++.++..+++++.|+++||+|||++++.+.++.+++.++++++++ ++.+++.
T Consensus 38 ~~~~~l~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~ 114 (394)
T PRK10213 38 LPVSLLTPMAQDLG-ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS--FSLLLIG 114 (394)
T ss_pred HHHhhHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh--HHHHHHH
Confidence 34556888989888 99999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
|+++|++.+...+ ..+++.|++|+++|++++++...+.++|..++|.+++.+ +||+.|++.+++.+++.+.....
T Consensus 115 r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~ 194 (394)
T PRK10213 115 RACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKS 194 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999887 89999999888777644444445
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHH
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVI 270 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
+||+|+. + ++ ..+..++ .+++|..+...+....
T Consensus 195 ~p~~~~~---~-------~~------------------------------------~~~~~~~-~l~~~~~~~~~~~~~~ 227 (394)
T PRK10213 195 LPSLPGE---P-------SH------------------------------------QKQNTFR-LLQRPGVMAGMIAIFM 227 (394)
T ss_pred CCCCCcc---c-------cc------------------------------------chhHHHH-HhcCHHHHHHHHHHHH
Confidence 6775421 0 00 0001122 5565554432222111
Q ss_pred HHHHHhhcccchhhhcH-HHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhc
Q psy8697 271 LFTLQQFTGVYPVIFYA-MQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSN 348 (508)
Q Consensus 271 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~ 348 (508)
.. .+......+. |.+.++.|++.+. .......+++.+++.++.+++.||.++ +.+..+..+..+..+.+.
T Consensus 228 -~~----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~-- 299 (394)
T PRK10213 228 -SF----AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLT-- 299 (394)
T ss_pred -HH----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHH--
Confidence 11 1123334454 6666667876655 466777888899999999999999544 433333333333322222
Q ss_pred cccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhH
Q psy8697 349 LLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPW 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (508)
... ...+.......+.+.+++. ..+...
T Consensus 300 ---------------~~~------------------------------------~~~~~~~~~~~l~G~~~~~-~~~~~~ 327 (394)
T PRK10213 300 ---------------LWG------------------------------------SDKIVATGVAIIWGLTFAL-VPVGWS 327 (394)
T ss_pred ---------------HHh------------------------------------hhHHHHHHHHHHHHHHHHh-hhHHHH
Confidence 110 1333344444444444433 334444
Q ss_pred hhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhh
Q psy8697 429 TMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVG 486 (508)
Q Consensus 429 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 486 (508)
+++.+..|+ .++...++.....++|..+|+.+.|.+.|. |+...+...+.+.++..+
T Consensus 328 ~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 328 TWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 677777774 467778888888899999999999999998 877777776655554433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=262.61 Aligned_cols=378 Identities=15% Similarity=0.145 Sum_probs=253.8
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc----CCcchHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA----DPGNIELL 112 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~----~~~~~~~l 112 (508)
+....|.+++ .+ .++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++. .+ ++.+
T Consensus 46 ~~~~~p~~~~-~g-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l 121 (438)
T TIGR00712 46 FALAMPYLVE-QG-FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSS--IAIM 121 (438)
T ss_pred HHhhhHHHHH-cC-CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccch--HHHH
Confidence 3445677765 45 999999999999999999999999999999999999999999999999888765 35 7888
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHh
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~ 186 (508)
.+.|++.|++.|...+ ...++.|++|+++|++++++.+.+.++|..+++.+.... +||..|++.+++.++..++
T Consensus 122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 8999999999999988 999999999999999999999999999999888765542 8999999999988886667
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
.++++||+|+....+ +..++ ++ +.++... ++.+ ++.+.++..++..++++..+...+
T Consensus 202 ~~~~~~~~~~~~~~~-------~~~~~-~~------~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 258 (438)
T TIGR00712 202 AFAMMRDTPQSCGLP-------PIEEY-RN------DYPDDYN-------EKAE--QELTAKEIFMQYVLPNKLLWYIAI 258 (438)
T ss_pred HHHhccCCHHhcCCC-------Cchhc-cc------ccccccc-------cccc--cccchHHHHHHHHccCchHHHHHH
Confidence 777889887532111 00000 00 0000000 0000 000111122222556665443222
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSIL 344 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~ 344 (508)
...+ .....+.+..|.|.++++ .|++... ........+.+++++++++++.||+++++....+.....+..+.
T Consensus 259 ~~~~-----~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 333 (438)
T TIGR00712 259 ANVF-----VYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIA 333 (438)
T ss_pred HHHH-----HHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 2111 222245677899999987 5665544 45667778889999999999999996544333333222222111
Q ss_pred HhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcch
Q psy8697 345 LSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVI 424 (508)
Q Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (508)
.. .+...+ ....+......+..+. ...+..
T Consensus 334 ~~-----------------~~~~~~--------------------------------~~~~~~~~~~~~~~g~-~~~~~~ 363 (438)
T TIGR00712 334 VI-----------------VYWMNP--------------------------------AGNPLVDMICMIVIGF-LIYGPV 363 (438)
T ss_pred HH-----------------HHHhcC--------------------------------CCchHHHHHHHHHHHH-HHccHH
Confidence 11 000000 0012222222222221 112222
Q ss_pred hhhHhhhhccCcccchhhHHHHHHHHHHHHH-HHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 425 VIPWTMISELLPSYARGVCSGLMISYGYVCM-FFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 425 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~-~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
........|.+|++.|+++.|+.+..+++++ +++|.+.|.+.|. |+...+.+.+++.+++.+..++..||.|
T Consensus 364 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 364 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2223467899999999999999999988875 6899999999998 9999988888887777777776677655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=253.11 Aligned_cols=342 Identities=14% Similarity=0.125 Sum_probs=242.7
Q ss_pred hhhhHHHHhh-hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHH---h-----c
Q psy8697 34 LFYYLVYLKY-LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTI---L-----A 104 (508)
Q Consensus 34 ~~~~~~~~~~-i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~---~-----~ 104 (508)
..+..|.+|. +.++++ .|+.+.|++.+.+.+++.++++++|+++||+||||+++.+.+...++.+... . .
T Consensus 31 ~~~~~p~l~~~l~~~lg-~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (392)
T PRK12382 31 VGLPLPVIPLFVHHDLG-FGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAP 109 (392)
T ss_pred HHHHhhhhhHHHHHhcC-CcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence 3344666775 566777 9999999999999999999999999999999999999999888777655332 2 2
Q ss_pred CCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHH
Q psy8697 105 DPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLAL 179 (508)
Q Consensus 105 ~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~ 179 (508)
++ ++.++++|+++|++.+...+ ..+++.|+.|+++|++++++.+.+..+|..++|.+++.+ +||..+.+..+.
T Consensus 110 ~~--~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 110 FK--FALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 45 89999999999999999999 999999999999999999999999999999999998876 899877766555
Q ss_pred HHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCc
Q psy8697 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTR 259 (508)
Q Consensus 180 ~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (508)
.++ ........||.++. + +++ ++.++..+ .+
T Consensus 188 ~~~-~~~~~~~~~~~~~~---~-------~~~----------------------------------~~~~~~~~-~~--- 218 (392)
T PRK12382 188 PLL-AWAFNGTVRKVPAH---A-------GER----------------------------------PSLWSVVG-LI--- 218 (392)
T ss_pred HHH-HHHHHHhccCCCCC---c-------ccC----------------------------------chHHHHHH-HH---
Confidence 443 22222223332110 0 000 00000011 01
Q ss_pred ccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHH
Q psy8697 260 ECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLG 339 (508)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~ 339 (508)
++..+...... .+......+.+.++++.+.+. ........+++.++++++.+++.||+|+|+.+..+..+..
T Consensus 219 --~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 290 (392)
T PRK12382 219 --WKPGLGLALQG-----VGFAVIGTFVSLYFASKGWAM-AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVET 290 (392)
T ss_pred --HHhHHHHHHHH-----HHHhHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHH
Confidence 11111111111 112344566777777766542 2344455667778899999999999999999998888888
Q ss_pred HHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHH
Q psy8697 340 VSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFS 419 (508)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (508)
++.+.+. .. .+.+.......+.+.+.
T Consensus 291 ~~~~~~~-----------------~~-------------------------------------~~~~~~~~~~~l~g~~~ 316 (392)
T PRK12382 291 VGLLLLW-----------------LA-------------------------------------PTAWVALAGAALTGAGC 316 (392)
T ss_pred HHHHHHH-----------------Hc-------------------------------------ccHHHHHHHHHHHHHHH
Confidence 7776665 20 02233333333333333
Q ss_pred hhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEE
Q psy8697 420 AVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYF 490 (508)
Q Consensus 420 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 490 (508)
+. ..+...+...|..|++.||++.|+.+....+|..++|.+.|.+.+. |+...|.+.+++.+++.++.+.
T Consensus 317 ~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 317 SL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred Hh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 32 3344457778889999999999999999999999999999999998 9999999988888877665543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=261.11 Aligned_cols=384 Identities=13% Similarity=0.046 Sum_probs=264.9
Q ss_pred HHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHH
Q psy8697 21 VRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLL 100 (508)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l 100 (508)
.....++.....+.......+|.+.++++ .+.++.+|+.+.+.++..++++++|+++||+|||++++.+..++.+++++
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~-~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMTLG-ASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33344444444445555677999999988 89999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhcc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHH
Q psy8697 101 TILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEIC-HENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSY 174 (508)
Q Consensus 101 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~ 174 (508)
++++++ ++.++++|+++|++.+...+ ....+.+.+ |+++|+++++++.....+|..+||.+++.+ +||+.|+
T Consensus 88 ~~~a~~--~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~ 165 (495)
T PRK14995 88 AAFSPT--ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFL 165 (495)
T ss_pred HHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence 999999 99999999999999999998 888787765 679999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHH------HHHHHhCChhhhHHHHHH-------HHHhhhh
Q psy8697 175 CFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEK------SLKFLNRNPEIFEKEWRV-------LCQVRTR 241 (508)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-------~~~~~~~ 241 (508)
+...+.++..++..+++||+|+.. + ++.+..+....... .++....+.......... ...-...
T Consensus 166 i~~~~~~~~~~l~~~~l~~~~~~~--~-~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~ 242 (495)
T PRK14995 166 INVPIVLVVMGLTARYVPRQAGRR--D-QPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRT 242 (495)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCC--C-CCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 998888876666777788865321 0 00010010000000 000000000000000000 0000000
Q ss_pred hhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHH
Q psy8697 242 YDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTT 319 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~ 319 (508)
+.+.+.+.-.++ +++++......+.... ..........+.|.++++ .|++... ........+...+++++.|
T Consensus 243 e~~~~~p~~~~~-lf~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g 316 (495)
T PRK14995 243 QLAASRPMIDMR-LFTHRIILSGVVMAMT-----AMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAG 316 (495)
T ss_pred HhcCCCCCcCHH-HhCCcccHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111112234 7777654432222222 112244566788888887 5776554 4667777888899999999
Q ss_pred HhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccC
Q psy8697 320 VLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDH 399 (508)
Q Consensus 320 ~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
++.||+|+|+.+..+..+..++...+. .....
T Consensus 317 ~l~~r~g~~~~~~~g~~~~~~~~~~l~-----------------~~~~~------------------------------- 348 (495)
T PRK14995 317 ILVSRLGLRLVATGGMALSALSFYGLA-----------------MTDFS------------------------------- 348 (495)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHH-----------------HhcCC-------------------------------
Confidence 999999999988888887777776655 21110
Q ss_pred CCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 400 SSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
...+.......+.+.+.+... +.....+.+..|++.++.+.++.+....+|+.+|+.+.|.+.+.
T Consensus 349 ---~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 349 ---TQQWQAWGLMALLGFSAASAL-LASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred ---CchHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333444444444433 33346777889999999999999999999999999999998865
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=255.61 Aligned_cols=351 Identities=17% Similarity=0.181 Sum_probs=246.5
Q ss_pred hhhhHHHHhh-hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC---Cc--
Q psy8697 34 LFYYLVYLKY-LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD---PG-- 107 (508)
Q Consensus 34 ~~~~~~~~~~-i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~---~~-- 107 (508)
..+..|.+|. +.++++ .|+.+.|++.+.+.+++.+++++.|+++||+|||++++.+.++++++.+.+.++. +.
T Consensus 31 ~~~~~~~l~~~i~~~~g-~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (399)
T PRK05122 31 IGLPLAVLPGYVHDQLG-FSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPV 109 (399)
T ss_pred HHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccch
Confidence 4445666776 556667 8999999999999999999999999999999999999999999888777665532 10
Q ss_pred -chHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHH
Q psy8697 108 -NIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVL 181 (508)
Q Consensus 108 -~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~ 181 (508)
+++.+++.|+++|++.+...+ ...++.|+.|+++|++++++.+.+..+|..+|+.+++.+ +||..+++..+..+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 110 LSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred hHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 167899999999999999999 999999999999999999999999999999999998876 89998887766655
Q ss_pred HHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCccc
Q psy8697 182 ISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTREC 261 (508)
Q Consensus 182 ~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (508)
+ ..+.....||+++ ++ ++.. +..+ .+++ .
T Consensus 190 ~-~~~~~~~~~~~~~---~~-------~~~~-------------------------------------~~~~-~~~~--~ 218 (399)
T PRK05122 190 L-GLLLARPRPAVPP---VK-------GERL-------------------------------------PFRR-VLGR--V 218 (399)
T ss_pred H-HHHHHhcCCCCCC---CC-------ccch-------------------------------------hHHH-HHHH--H
Confidence 4 3333222333211 00 0000 0000 1110 0
Q ss_pred chhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHH
Q psy8697 262 YKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVS 341 (508)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 341 (508)
+...... .+.. ........+.+.++.+.|.+ +........+++.+++.++.+++.||+++|+.+..+..+.+++
T Consensus 219 ~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 292 (399)
T PRK05122 219 WPYGMGL-ALAS----IGFGTIATFITLYYAARGWD-GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILG 292 (399)
T ss_pred HHHHHHH-HHHH----HHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111111 1111 11233455677777766552 2334455677778889999999999999999888887777777
Q ss_pred HHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhh
Q psy8697 342 SILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAV 421 (508)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
.+.+. .. .+.+...+...+.+.+.+.
T Consensus 293 ~~~~~-----------------~~-------------------------------------~~~~~~~~~~~l~G~~~~~ 318 (399)
T PRK05122 293 LLLLW-----------------LA-------------------------------------PSPWMALIGAALTGFGFSL 318 (399)
T ss_pred HHHHH-----------------Hh-------------------------------------ccHHHHHHHHHHHHHhHHH
Confidence 66665 20 1223333333333333333
Q ss_pred cchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCC
Q psy8697 422 GVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGK 498 (508)
Q Consensus 422 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (508)
..+.......|..|++.|+++.|+.+....+|..+++.+.|.+.+. |+...+...+++.+++.++.+. .+++++|
T Consensus 319 -~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 394 (399)
T PRK05122 319 -VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAPR 394 (399)
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hcccccc
Confidence 3344446677889999999999999999999999999999999998 9888888888887777655544 3443333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=254.64 Aligned_cols=356 Identities=20% Similarity=0.224 Sum_probs=250.2
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
..+..|.+.++++ .++.+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.++..++++ ++.+++.|
T Consensus 36 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 112 (398)
T TIGR00895 36 MGFAAPAISAEWG-LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN--VTQLLILR 112 (398)
T ss_pred HHhhHHHHhhccC-CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHH
Confidence 4566888888887 89999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcC
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFA 191 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l 191 (508)
++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|..+++.+++.+ +||..|++.+++.++..++...++
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 192 (398)
T TIGR00895 113 FLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFL 192 (398)
T ss_pred HHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhC
Confidence 999999999999 999999999999999999999999999999999998877 899999998777776567777788
Q ss_pred CCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHH
Q psy8697 192 PESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVIL 271 (508)
Q Consensus 192 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (508)
||++++..++ + .++..+..++.......+++. +..++.++++..+..++..++.+ ..+........
T Consensus 193 ~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 258 (398)
T TIGR00895 193 PESIDFLVSK-------R-PETVRRIVNAIAPQMQAEAQS-----ALPEQKATQGTKRSVFKALFQGK-TARITVLLWLL 258 (398)
T ss_pred CCCChHHHhc-------C-HHHHHHHHHHHHHhccccccc-----cccccccccchhhHHHHHHhcch-hHHHHHHHHHH
Confidence 9987654333 1 111111111111000000000 00000011111223333123322 22222222222
Q ss_pred HHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccc
Q psy8697 272 FTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLL 350 (508)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~ 350 (508)
.. ...........+.|.+.++.|.+.+. ........++.+++.++.+++.||++||+ ......+.++....+.
T Consensus 259 ~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~---- 332 (398)
T TIGR00895 259 YF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-TALLLLLGAVFAVLVG---- 332 (398)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHHH----
Confidence 22 22333555677888777777776544 46677778889999999999999999984 3333333333333333
Q ss_pred cccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhh
Q psy8697 351 MKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTM 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (508)
. .. ...+......++.+.+.+. ..+...++
T Consensus 333 -------------~--~~----------------------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~ 362 (398)
T TIGR00895 333 -------------S--TL----------------------------------FSPTLLLLLGAIAGFFVNG-GQSGLYAL 362 (398)
T ss_pred -------------H--Hh----------------------------------hCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 1 00 0223333334444443333 34556799
Q ss_pred hhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy8697 431 ISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFA 465 (508)
Q Consensus 431 ~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l 465 (508)
+.|.+|++.|+++.|+.+....+|..++|.+.|.+
T Consensus 363 ~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 363 MALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999999999999999999875
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=255.82 Aligned_cols=391 Identities=17% Similarity=0.148 Sum_probs=282.6
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCc-----chHHHHHHHHHhhcchhh
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPG-----NIELLYLSKICAGIGGGM 125 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~-----~~~~l~~~r~l~G~~~g~ 125 (508)
+++...+.+.++..+|..+||++.|+++||+|||+++...++++++++++++++... -.+++...|++.|+|.|+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 566677889999999999999999999999999999999999999999988876543 357889999999999999
Q ss_pred HHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-------------------hhHHHHHHHHHHHHHHHH
Q psy8697 126 STV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-------------------DWRSLSYCFLALVLISGL 185 (508)
Q Consensus 126 ~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-------------------~wr~~f~~~~~~~~~~~~ 185 (508)
-+| +.+..+|...+++||...+...+..++|.+.|.+++..+ -||..+.+.++++++ .+
T Consensus 161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~-~l 239 (538)
T KOG0252|consen 161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL-VL 239 (538)
T ss_pred CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH-HH
Confidence 999 999999999999999999999888888888887777655 499999999998888 77
Q ss_pred hhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhH
Q psy8697 186 VLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPL 265 (508)
Q Consensus 186 ~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (508)
...+.+|||+++..... ++.+++.+ +..++... +..++...+.+....+...+.+.+ .+..+ .-+++
T Consensus 240 y~Rl~M~Et~~Y~al~~------~~~~~a~~---d~~k~~~~--~~~~~~~~~~~~~~~~~~~~~F~~-~f~~~-hg~~L 306 (538)
T KOG0252|consen 240 YFRLKMPETARYTALVS------KKLKQAAG---DMKKVLSV--DIEAESTAESDVPPPSNSFGLFSR-LFLRW-HGKHL 306 (538)
T ss_pred HhhhcCCcchhHHHHhh------cCHhhhhh---cccccccc--ccchhhccccCCCCcccccchHHH-HHHHH-HHHHH
Confidence 88889999998763331 12122211 11111111 000000001111111112222333 33333 23334
Q ss_pred HHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchhh-H--------HHHHHH-HHHHHHHHHHHHhhcccCCeeehhhhh
Q psy8697 266 ILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDES-H--------ALVFLG-IIRFGMSVVTTVLARGFGRKQLLIVSA 335 (508)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~--------~~~~~~-~~~~~~~~~~~~l~dr~grr~~l~~~~ 335 (508)
+.. +...+..-..++....+...+++..|...... . ...+.+ ...++|..+...++|++|||+..+.++
T Consensus 307 lgt-~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF 385 (538)
T KOG0252|consen 307 LGT-AGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGF 385 (538)
T ss_pred HHH-HHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhH
Confidence 444 44444444457888899999999877733221 1 111111 122234445567899999999999999
Q ss_pred hHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHH
Q psy8697 336 AGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLY 415 (508)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (508)
+++.+..+.++ ...... . ......++..+.
T Consensus 386 ~~~~i~~~~~~-----------------~~y~~~--------------------------------~-~~~Gf~v~y~l~ 415 (538)
T KOG0252|consen 386 FIMTIFFFVIA-----------------GPYNQL--------------------------------E-NTIGFVVLYSLT 415 (538)
T ss_pred HHHHHHHHHHc-----------------CCcccc--------------------------------c-ccCceeehHHHH
Confidence 99999998888 311100 0 222234444556
Q ss_pred HHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhh-----h-ccchhHHHHHHHHHHhhheeE
Q psy8697 416 VFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH-----S-SVIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 416 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~-----~-g~~~~~~~~~~~~~~~~~~~~ 489 (508)
.++...+.+.....+.+|.+|++.|+++.|+..+.+-.|++++...+.++.+ . +...++++++++++++.++.+
T Consensus 416 ~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~ 495 (538)
T KOG0252|consen 416 FFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL 495 (538)
T ss_pred HHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE
Confidence 6677888888888999999999999999999999999999999999999999 5 888999999999999876655
Q ss_pred EEeccCCCCChHHHHhhh
Q psy8697 490 FYLPETKGKTFVEIEKYF 507 (508)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~ 507 (508)
+ +||||+|++||+++|.
T Consensus 496 l-~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 496 L-IPETKGKSLEEISNEE 512 (538)
T ss_pred E-eecccccCHHHhcChh
Confidence 4 6799999999997664
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=262.24 Aligned_cols=358 Identities=12% Similarity=0.108 Sum_probs=244.2
Q ss_pred cccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHhhcchh
Q psy8697 47 HYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA--DPGNIELLYLSKICAGIGGG 124 (508)
Q Consensus 47 ~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~--~~~~~~~l~~~r~l~G~~~g 124 (508)
+++ .+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+ ++.+++.|+++|++.+
T Consensus 70 ~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~~~G~~~~ 146 (465)
T TIGR00894 70 NFK-WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG--IALVVFCRVIQGLAQG 146 (465)
T ss_pred CCC-CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC--chHHHHHHHHHHHhcc
Confidence 455 889999999999999999999999999999999999999999999999887554 56 8889999999999999
Q ss_pred hHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhcCCCCchhh
Q psy8697 125 MSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICFAPESPHWL 198 (508)
Q Consensus 125 ~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~ 198 (508)
...+ ...++.|++|+++|++++++...+..+|.++++.+++.+ +||+.|++.+++.++..++.+.+.+|+|+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~ 226 (465)
T TIGR00894 147 SVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH 226 (465)
T ss_pred cchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence 9999 999999999999999999999999999999999998776 7999999999988885666666677877521
Q ss_pred hhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhc
Q psy8697 199 INMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFT 278 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (508)
... + +++.+. .+ +..++++++.+.+..+++.++++..+. ..+..+....
T Consensus 227 ~~~-------~-~~~~~~-i~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 275 (465)
T TIGR00894 227 PCI-------S-KFEKKY-IN-----------------SSLQGQKGSTRQSLPIKAIPKSLPVWA-----IWFAIFGHFW 275 (465)
T ss_pred CCC-------C-HHHHHH-HH-----------------hhcccccCCCCCCCCHHHHhcCHHHHH-----HHHHHHHHHH
Confidence 110 1 111000 00 000000000111112333666664333 2233333333
Q ss_pred ccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhh---hhhHHHH-----HHHHHhhc
Q psy8697 279 GVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIV---SAAGLGV-----SSILLSSN 348 (508)
Q Consensus 279 ~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~---~~~~~~~-----~~~~l~~~ 348 (508)
+.+.+..|.|.++++ .|++... .....+..++.+++.++.|+++||+++|+.... ......+ +...+.
T Consensus 276 ~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 353 (465)
T TIGR00894 276 LYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYA-- 353 (465)
T ss_pred HHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH--
Confidence 456778899999877 6776544 356667788889999999999999875543211 0111111 111111
Q ss_pred cccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhH
Q psy8697 349 LLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPW 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (508)
. .... ...+..+..+.+...+.+. ..+..+
T Consensus 354 ---------------~-~~~~---------------------------------~~~~~~~~~~~l~~~~~~~-~~~~~~ 383 (465)
T TIGR00894 354 ---------------L-PYLS---------------------------------AAFYLTIIILTLANAVSSG-PLAGVL 383 (465)
T ss_pred ---------------H-HHcC---------------------------------CchHHHHHHHHHHHHHhhh-hhhhhh
Confidence 0 0000 0222222233322222222 223333
Q ss_pred hhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh----ccchhHHHHHHHHHHhhheeEEE
Q psy8697 429 TMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS----SVIGTFNVFGLVSFTLVGFVYFY 491 (508)
Q Consensus 429 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~----g~~~~~~~~~~~~~~~~~~~~~~ 491 (508)
....|..|. .+|.+.|+.+..+.++++++|.+.|.+.+. ++...|.+.+++.+++.++....
T Consensus 384 ~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 384 INSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred hchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 455676665 789999999999999999999999988764 36678888888888876665543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=256.92 Aligned_cols=357 Identities=13% Similarity=0.122 Sum_probs=245.5
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
.+.+..|.+.++++ .++.+.|++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++.+++++ ++.+++.
T Consensus 13 ~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 89 (379)
T TIGR00881 13 NFALAMPYLVEEIG-LSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS--LWVMAAL 89 (379)
T ss_pred hhhhhhHHHHHHhC-CCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh--HHHHHHH
Confidence 34556788888888 89999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHH-HHHHhh----hhHHHHHHHHHHHHHHHHhhhh
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTT-ILNLYL----DWRSLSYCFLALVLISGLVLIC 189 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~-~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 189 (508)
|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|..+++ .++..+ +||+.|++.+++.++..++..+
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 90 WALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 9999999999999 999999999999999999999999999999999 455544 8999999998888776677777
Q ss_pred cCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHH
Q psy8697 190 FAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLV 269 (508)
Q Consensus 190 ~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (508)
+.||+|+....+ +++++.. ++.+++ +++ ++++.+..+...++.++++..+...+...
T Consensus 170 ~~~~~~~~~~~~-------~~~~~~~---------~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (379)
T TIGR00881 170 LLRDSPQSCGLP-------PAEEMPN---------EEPDGD------AEK-KEEELTKKQIFLQYVLLNKVLWYISLGYV 226 (379)
T ss_pred eeCCCccccccC-------ccccCcc---------cccccc------ccc-ccccccchHHHHHHHHhcchHHHHHHHHH
Confidence 788876431111 0000000 000000 000 00011111222232666665443222221
Q ss_pred HHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhh
Q psy8697 270 ILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSS 347 (508)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~ 347 (508)
. ..........+.|.++++ .|++... ........+..+++.++.+++.||..+|+...............+.
T Consensus 227 ~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~- 300 (379)
T TIGR00881 227 F-----VYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL- 300 (379)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-
Confidence 1 122234566788888866 5776544 4667777888899999999999986443322222222222221111
Q ss_pred ccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhh
Q psy8697 348 NLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIP 427 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (508)
.....+. ...+.........+ ....+..+..
T Consensus 301 ----------------~~~~~~~--------------------------------~~~~~~~~~~~~~g-~~~~~~~~~~ 331 (379)
T TIGR00881 301 ----------------VYWLNPA--------------------------------ANPLMDLICLFALG-FLVYGPQMLI 331 (379)
T ss_pred ----------------HHhcCcc--------------------------------hhHHHHHHHHHHHH-HHHhhhhHHH
Confidence 1100000 01122222222222 2233334444
Q ss_pred HhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchh
Q psy8697 428 WTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGT 473 (508)
Q Consensus 428 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~ 473 (508)
..+..|.+|++.|+++.|+.+....+|+.++|.+.|.+.+. |+...
T Consensus 332 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 332 GVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 57889999999999999999999999999999999999998 77654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=257.94 Aligned_cols=383 Identities=14% Similarity=0.151 Sum_probs=254.2
Q ss_pred hhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHH
Q psy8697 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLY 113 (508)
Q Consensus 34 ~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~ 113 (508)
.....+..|.+.++++ .++.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++.+++++ ++.++
T Consensus 36 ~~~~~~~~~~i~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 112 (496)
T PRK03893 36 FVLITLVLTEVQGEFG-LTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPG--YWTLF 112 (496)
T ss_pred HHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhH--HHHHH
Confidence 3345667889988888 99999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
+.|++.|++.+...+ ...++.|++|+++|++++++...+..+|..+++.++..+ +||+.|++..+..++ .+...
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~-~~~~~ 191 (496)
T PRK03893 113 IARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF-ALWLR 191 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999999 999999999999999999999999999999999999877 899999875554444 44455
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHH------HHHhhhhhhhhhhh----------HHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRV------LCQVRTRYDETRNK----------KALW 252 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------~~~~ 252 (508)
..+||++++..++++ .++..+..+.....+......... ....... ...... ....
T Consensus 192 ~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 263 (496)
T PRK03893 192 KNLPEAEDWKEKHAG-------KAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAG-NLQNAAIVAVLGLLCAAIFI 263 (496)
T ss_pred HhCCCchhhhhhccc-------cccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHh-hhcchhHHHHHHHHHHHHHH
Confidence 567887654322210 000000000000000000000000 0000000 000000 0000
Q ss_pred HHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHH-HhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeee
Q psy8697 253 RQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFK-EVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQL 330 (508)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 330 (508)
....+.+..+++.........+...........+.|.+++ +.|++... ........++.+++.++.+++.||+|||+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~ 343 (496)
T PRK03893 264 SFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKA 343 (496)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 0000111111122222222222222222345678899986 57776544 466777888899999999999999999998
Q ss_pred hhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHH
Q psy8697 331 LIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLL 410 (508)
Q Consensus 331 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (508)
+..+..+..+..+.+. .. . ........
T Consensus 344 ~~~~~~~~~~~~~~~~-----------------~~-~-----------------------------------~~~~~~~~ 370 (496)
T PRK03893 344 YVCSLLISQLLIIPVF-----------------AI-G-----------------------------------GANVWVLG 370 (496)
T ss_pred HHHHHHHHHHHHHHHh-----------------hc-c-----------------------------------ccHHHHHH
Confidence 8777666555544333 11 0 01111111
Q ss_pred HHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHH
Q psy8697 411 FILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVS 481 (508)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~ 481 (508)
.......+...+..+...+++.|.+|++.|++++|+.+....+|+.++|.+.|.+.+. |+...+...++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 371 LLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 2222222223334445557889999999999999999999999999999999999998 8777765544433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=250.41 Aligned_cols=340 Identities=14% Similarity=0.054 Sum_probs=242.5
Q ss_pred chhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHH
Q psy8697 33 GLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELL 112 (508)
Q Consensus 33 ~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l 112 (508)
+..++.|.+|.+.++++ .++.+.++..+.+.+++.+++++.|+++||+|||++++.+..+..++.++..++++ ++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~l 104 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFN-AGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQS--IEQF 104 (406)
T ss_pred hhhhHhcchHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcc--HHHH
Confidence 34445677888988888 89999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhh
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 187 (508)
++.|+++|++.+...+ ..+++.|.+|+++|++..++......+|..++|.+++.+ +||+.|++.+++.++..+..
T Consensus 105 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK15402 105 TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL 184 (406)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 999999999999999999999888888999999988776 89999999888888755555
Q ss_pred hhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHH
Q psy8697 188 ICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLIL 267 (508)
Q Consensus 188 ~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (508)
.+..||+++.. +++.+ .++..++..+ .+++|..+...+.
T Consensus 185 ~~~~~~~~~~~----------~~~~~------------------------------~~~~~~~~~~-~~~~~~~~~~~~~ 223 (406)
T PRK15402 185 WRAMPETAGRV----------GEKLS------------------------------LKELGRDYKL-VLKNRRFVAGALA 223 (406)
T ss_pred HHhCCCCCccc----------ccccc------------------------------HHHHHHHHHH-HHcCcHHHHHHHH
Confidence 56678764310 00000 0000111122 6666654432222
Q ss_pred HHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHH
Q psy8697 268 LVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345 (508)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l 345 (508)
..... ........+.|.++.+ .|.+... ........++.+++.++.+++.||+++|+.+..+..+..++...+
T Consensus 224 ~~~~~-----~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~ 298 (406)
T PRK15402 224 LGLVS-----LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLA 298 (406)
T ss_pred HHHHH-----HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 11111 1122334556777655 6665544 344445556788899999999999999998888887777777666
Q ss_pred hhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchh
Q psy8697 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIV 425 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (508)
. ...... ....+.......+.+.+.+... +
T Consensus 299 ~-----------------~~~~~~--------------------------------~~~~~~~~~~~~~~g~g~~~~~-~ 328 (406)
T PRK15402 299 A-----------------LATVIS--------------------------------SHAYLWLTAGLSLYAFGIGLAN-A 328 (406)
T ss_pred H-----------------HHHHcc--------------------------------cccHHHHHHHHHHHHHHHHHHh-h
Confidence 5 321110 0022222333333333333322 2
Q ss_pred hhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccch
Q psy8697 426 IPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIG 472 (508)
Q Consensus 426 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~ 472 (508)
........ .+++.||+..++.+....++..+++.+.+.+.+. +...
T Consensus 329 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 329 GLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL 375 (406)
T ss_pred hHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence 32233333 3447899999999999999999999999999888 4433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=255.22 Aligned_cols=356 Identities=15% Similarity=0.144 Sum_probs=233.9
Q ss_pred hhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHH
Q psy8697 35 FYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYL 114 (508)
Q Consensus 35 ~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~ 114 (508)
....|..|.+.++++ ++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++.+++++ ++.+++
T Consensus 53 ~~~~~~~~~l~~~~g-ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s--~~~l~~ 129 (476)
T PLN00028 53 FAAAPLLPIIRDNLN-LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS--ATGFIA 129 (476)
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC--HHHHHH
Confidence 345778899999988 89999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhcchhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHh-------------hhhHHHHHHHHHHHH
Q psy8697 115 SKICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY-------------LDWRSLSYCFLALVL 181 (508)
Q Consensus 115 ~r~l~G~~~g~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~-------------l~wr~~f~~~~~~~~ 181 (508)
+|++.|++.+...+...+++|++|+++|++++++.....++|..+++.+... .+||+.|++.+++.+
T Consensus 130 ~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l 209 (476)
T PLN00028 130 VRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHI 209 (476)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence 9999999987654466789999999999999999976666666655443322 279999999999888
Q ss_pred HHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCccc
Q psy8697 182 ISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTREC 261 (508)
Q Consensus 182 ~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (508)
+..++..++.+|.|+ ++.++.++ +.+. ++.+..+...+ .+++++.
T Consensus 210 ~~~l~~~~~~~~~p~------------~~~~~~~~---------------------~~~~-~~~~~~~~~~~-~~~~~~~ 254 (476)
T PLN00028 210 IMGILVLTLGQDLPD------------GNYRELKK---------------------SGTM-PKDSFSKVLRY-GVTNYRT 254 (476)
T ss_pred HHHHHHHHHcCcCCC------------CchhhHHh---------------------cCcc-ccccHHHHHHH-HHcCchh
Confidence 755555554444442 11000000 0000 00001112222 5666654
Q ss_pred chhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCee-------ehh
Q psy8697 262 YKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQ-------LLI 332 (508)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~-------~l~ 332 (508)
|...+ .. +.+......+..+.|.++.+ .|++... .....+.+++.+++++++|+++||++||+ ...
T Consensus 255 ~~~~~----~~-~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~ 329 (476)
T PLN00028 255 WILAL----TY-GYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALW 329 (476)
T ss_pred HHHHH----HH-HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHH
Confidence 33211 11 11112223456678888766 5776554 46677788899999999999999998763 111
Q ss_pred hhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHH
Q psy8697 333 VSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFI 412 (508)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (508)
....+.++..+.+. . . ...+...+.+
T Consensus 330 ~~~~l~~i~~~~~~-----------------~---~----------------------------------~~~~~~~~~~ 355 (476)
T PLN00028 330 IVQTLGGVFCIWLG-----------------R---A----------------------------------NSLGAAIVVM 355 (476)
T ss_pred HHHHHHHHHHHHhc-----------------c---c----------------------------------chHHHHHHHH
Confidence 22222222222222 1 0 0122222223
Q ss_pred HHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEE
Q psy8697 413 LLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYF 490 (508)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 490 (508)
.++..+.... .+..+++..+..| +.+|++.|+.+..+.+|+.+++.+.+ ..+. ++...|.+.+++.+++.++.++
T Consensus 356 ~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 356 ILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 3333322222 2233456667654 68899999998888888888877655 2223 5778888888777776655444
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=251.84 Aligned_cols=344 Identities=13% Similarity=0.138 Sum_probs=248.8
Q ss_pred hhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHH
Q psy8697 35 FYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYL 114 (508)
Q Consensus 35 ~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~ 114 (508)
....+.+|.+.++++ +|+++.+++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.++.+++++ ++.+++
T Consensus 24 ~~~g~~~~~i~~~~~-~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~--~~~~~~ 100 (394)
T PRK03699 24 IVTGMVMGPIAEYFN-LPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHS--LALFSI 100 (394)
T ss_pred HHHhhhhHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcch--HHHHHH
Confidence 345677899999887 99999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 115 SKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 115 ~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
.|+++|++.+...+ ...++.|++|+++|+++++..+....+|..++|.+.+.+ +||+.|.+.+++.++..++ .
T Consensus 101 ~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~-~ 179 (394)
T PRK03699 101 AMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL-T 179 (394)
T ss_pred HHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-H
Confidence 99999999999998 999999999999999999999888899988888887654 8999999988877763333 2
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILL 268 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (508)
++ ++.|+. ++ ++.++ +++. .+.+ +++.+..
T Consensus 180 ~~-~~~p~~--~~-------~~~~~------------------------------~~~~--------~~~~--~~~~~~~ 209 (394)
T PRK03699 180 LF-SEFPAL--GK-------HAPKA------------------------------DKPV--------AKEK--WGIGVLF 209 (394)
T ss_pred Hh-cCCccc--cc-------cCccc------------------------------cCcc--------cccc--CChHHHH
Confidence 22 222210 00 00000 0000 0000 1111122
Q ss_pred HHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHh
Q psy8697 269 VILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~ 346 (508)
..+..+......+.+..|.|.++++ .|++.+. ........++..+++++.+++.||+++|+.+.....+..+....+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~ 289 (394)
T PRK03699 210 LAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 2222222222345667899999966 5776554 4556677788899999999999999999988776666555544443
Q ss_pred hccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhh
Q psy8697 347 SNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVI 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (508)
. . .+.+...+..+..+.+ ..+..+.
T Consensus 290 -----------------~---~----------------------------------~~~~~~~~~~~~~G~~-~~~~~~~ 314 (394)
T PRK03699 290 -----------------N---T----------------------------------DDPSHLLYAILGLGFF-SSAIYTT 314 (394)
T ss_pred -----------------H---c----------------------------------CCchHHHHHHHHHHHH-HHHHHHH
Confidence 1 0 0222222233333332 2234455
Q ss_pred hHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhee
Q psy8697 427 PWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFV 488 (508)
Q Consensus 427 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 488 (508)
..++..|..|. .+++..+.......+|..++|.+.|.+.+. |+...++..+++..++.+..
T Consensus 315 ~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 315 IITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 45667777664 457888999999999999999999999998 98888888887777765543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=247.43 Aligned_cols=351 Identities=14% Similarity=0.070 Sum_probs=252.7
Q ss_pred hhHHHHhhhcccccccCCcc-----chhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSH-----FGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIE 110 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~-----~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~ 110 (508)
.+.|.+|.+.++++ .+..+ .|++.+.+.++..++++++|+++||+|||+++..+..+.+++.++..++++ ++
T Consensus 32 ~~~~~l~~~~~~~g-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~ 108 (408)
T PRK09874 32 LVMPFLPLYVEQLG-VTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQN--IW 108 (408)
T ss_pred HhhhhHHHHHHHhC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhh--HH
Confidence 34667888888876 66554 488999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q psy8697 111 LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGL 185 (508)
Q Consensus 111 ~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~ 185 (508)
.+++.|++.|++.+. .+ ...++.|+.|+++|+++.++......+|..++|.+++.+ +||+.|++.+++.++..+
T Consensus 109 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 187 (408)
T PRK09874 109 QFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFL 187 (408)
T ss_pred HHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999999999998654 56 888999999999999999999999999999999999877 899999999988877566
Q ss_pred hhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhH
Q psy8697 186 VLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPL 265 (508)
Q Consensus 186 ~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (508)
...+++||+++.. ++.++ ...+..++ .+++++.+...
T Consensus 188 ~~~~~~~~~~~~~----------~~~~~--------------------------------~~~~~~~~-~~~~~~~~~~~ 224 (408)
T PRK09874 188 VTLFCIRENFQPV----------SKKEM--------------------------------LHMREVVT-SLKNPKLVLSL 224 (408)
T ss_pred HHHHHhccCcccc----------cchhh--------------------------------hHHHHHHH-hCcCCchHHHH
Confidence 6666777753210 00000 00011122 45555443322
Q ss_pred HHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-----hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHH
Q psy8697 266 ILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-----SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGV 340 (508)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~ 340 (508)
......... .......+.+.+..+.+.+.+. .......+++.+++.+..+++.||++||+.+..+..+..+
T Consensus 225 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 300 (408)
T PRK09874 225 FVTTLIIQV----ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVL 300 (408)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 222221111 1223344556666653322221 1233345667778888899999999999998888777666
Q ss_pred HHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHh
Q psy8697 341 SSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSA 420 (508)
Q Consensus 341 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (508)
+.+.+. .. ...+...+...+.+.+.+
T Consensus 301 ~~~~~~-----------------~~-------------------------------------~~~~~~~~~~~~~g~~~~ 326 (408)
T PRK09874 301 LLIPMS-----------------FV-------------------------------------QTPLQLGILRFLLGAADG 326 (408)
T ss_pred HHHHHH-----------------Hh-------------------------------------ccHHHHHHHHHHHHhhhH
Confidence 665554 20 122333333333333333
Q ss_pred hcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEe
Q psy8697 421 VGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYL 492 (508)
Q Consensus 421 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
...+...+...+..|++.+|+.+++.+....+|..++|.+.|.+.+. |+...|.+.+++.+++.++.+...
T Consensus 327 -~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 327 -ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred -hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 23455557778888999999999999999999999999999999998 999999999888888776655433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=254.45 Aligned_cols=370 Identities=12% Similarity=0.074 Sum_probs=258.9
Q ss_pred hhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHH
Q psy8697 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLY 113 (508)
Q Consensus 34 ~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~ 113 (508)
.....+.+|.+.++++ .+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..+++++++++++ ++.++
T Consensus 18 ~~~~~~~~p~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 94 (485)
T TIGR00711 18 STIVNVAIPTIAGDLG-SSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPN--LELMI 94 (485)
T ss_pred HHHHHHHHHHHHHhcC-CChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCC--HHHHH
Confidence 3445667899999988 89999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
++|+++|++.+...+ ..+++.|++|+++|+++.+++.....+|..++|.+++.+ +||+.|++.+++.++..++..
T Consensus 95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 174 (485)
T TIGR00711 95 IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAF 174 (485)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999887 899999999888887566666
Q ss_pred hcCCCCchhhhhcccccchhhhHHHH--HHHHH-H-HhCChhh--hH-HHHHHH---------HHhhhhhhhhhhhHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKA--EKSLK-F-LNRNPEI--FE-KEWRVL---------CQVRTRYDETRNKKALW 252 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~--~~-~~~~~~---------~~~~~~~~~~~~~~~~~ 252 (508)
+++||+++...++ .+..+..-.. ..... . .+.+++. .+ ...... ....+. +++++....
T Consensus 175 ~~~~~~~~~~~~~---~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 249 (485)
T TIGR00711 175 FILPRDKPAASEN---FDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL--TDDNPLVDL 249 (485)
T ss_pred HHcCCccccccCC---CcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH--cCCCCccCH
Confidence 6777754311000 0000000000 00000 0 0000000 00 000000 000000 011111123
Q ss_pred HHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeee
Q psy8697 253 RQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQL 330 (508)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 330 (508)
+ .++++.++...+....... ..+....+.|.++++ .|++... ........++.++++++.+++.||+|||+.
T Consensus 250 ~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 323 (485)
T TIGR00711 250 R-LFKYRNFTIGCVYMSLLGL-----GLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL 323 (485)
T ss_pred H-HHcCCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Confidence 4 6777765543332222222 234556788888887 5776544 466667778899999999999999999999
Q ss_pred hhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHH
Q psy8697 331 LIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLL 410 (508)
Q Consensus 331 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (508)
+..+..+.+++...+. .... ++ ...+....
T Consensus 324 ~~~g~~~~~~~~~~~~-----------------~~~~-~~--------------------------------~~~~~~~~ 353 (485)
T TIGR00711 324 VTIGLILYAVGFYWRA-----------------FTFT-PD--------------------------------TPFLAIAL 353 (485)
T ss_pred HHHHHHHHHHHHHHHh-----------------ccCC-CC--------------------------------CCHHHHHH
Confidence 8888887777776665 2111 10 12222333
Q ss_pred HHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 411 FILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
...+.+.+.+....+.. ....+..|++.++++.|+.+....+|+.+++.+.+.+.++
T Consensus 354 ~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 354 PQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433333443 5666778999999999999999999999999999999875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=245.11 Aligned_cols=359 Identities=13% Similarity=0.132 Sum_probs=256.4
Q ss_pred hhhhhhchhhhHHHHhhhcc-cccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc-
Q psy8697 27 YTQRWSGLFYYLVYLKYLTR-HYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA- 104 (508)
Q Consensus 27 ~~~~~~~~~~~~~~~~~i~~-~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~- 104 (508)
+..++....+.+|..+.+.+ +++ +|++|.+++.+++.+++.++.++.|.+.||+|.|+++.++.+++.+.+++.+++
T Consensus 43 f~~~F~~w~~~~~l~~~~~~~~~~-ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~ 121 (462)
T PRK15034 43 LLLAFCVWMLFSAVTVNLNKIGFN-FTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV 121 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 33355555666888888876 666 999999999999999999999999999999999999999999999999999987
Q ss_pred ----CCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------------
Q psy8697 105 ----DPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL------------ 167 (508)
Q Consensus 105 ----~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l------------ 167 (508)
++ ++.+++.|++.|++ +...+ ....+++++|+++||+++++.....++|..+++++...+
T Consensus 122 ~~~~~s--~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~ 198 (462)
T PRK15034 122 QNPNTP--FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN 198 (462)
T ss_pred cccCCC--HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77 99999999999998 66777 999999999999999999999766666665554443221
Q ss_pred ----------hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHH
Q psy8697 168 ----------DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQ 237 (508)
Q Consensus 168 ----------~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (508)
+||.+.++..++.++..++.+++.+|.|.
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----------------------------------------- 237 (462)
T PRK15034 199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----------------------------------------- 237 (462)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----------------------------------------
Confidence 38888888888887756566666555331
Q ss_pred hhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHH
Q psy8697 238 VRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSV 316 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 316 (508)
++...++..+ .+|+|+.|.-.++. +..+.++..+..+.|.+.++ .++... .....+..+...+.++
T Consensus 238 ------~~~~~~~~~~-vlk~~~~Wllslly-----~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rp 304 (462)
T PRK15034 238 ------SRASIADQLP-VLQRLHLWLLSLLY-----LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARS 304 (462)
T ss_pred ------cccCHHHHHH-HhCCCchhHHHHHH-----HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHH
Confidence 0011222333 78888765433222 33444466677889999877 343222 2334455677888899
Q ss_pred HHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCcc
Q psy8697 317 VTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSC 396 (508)
Q Consensus 317 ~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
++|+++||+|+|+++..+.+.+.++..... .....+.
T Consensus 305 lgG~LADRiG~~~vl~~~~i~~~i~~~~~~-----------------l~lp~~~-------------------------- 341 (462)
T PRK15034 305 VGGAISDKFGGVRVTLINFIFMAIFSALLF-----------------LTLPGTG-------------------------- 341 (462)
T ss_pred hhHHHHHhcCchHHHHHHHHHHHHHHHHHH-----------------HHhcccc--------------------------
Confidence 999999999999999988887777665443 2111000
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcc---------------------cchhhHHHHHHHHHHHHH
Q psy8697 397 VDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPS---------------------YARGVCSGLMISYGYVCM 455 (508)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~~~g~~~~~~~~g~ 455 (508)
....+......+......+.+...+ +-++.+.+|+ ++-|.+.|+....+.+|+
T Consensus 342 -----~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Gg 415 (462)
T PRK15034 342 -----SGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGG 415 (462)
T ss_pred -----ccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHccc
Confidence 0022222222222223334443333 4667777774 146789999999999999
Q ss_pred HHHHHHhHHHhhh--ccchhHHHHHHHHHHhhheeEEEe
Q psy8697 456 FFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGFVYFYL 492 (508)
Q Consensus 456 ~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
++.|.++|...+. ++...|+.+.+..+++.++.|..+
T Consensus 416 f~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 416 FFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred chhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999887 577778888888888777766543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=243.97 Aligned_cols=333 Identities=15% Similarity=0.197 Sum_probs=242.6
Q ss_pred hhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHH
Q psy8697 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLY 113 (508)
Q Consensus 34 ~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~ 113 (508)
..++.|..|.+.++++ .++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+++++ ++.++
T Consensus 21 ~~~~~~~~p~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 97 (385)
T TIGR00710 21 IDMYLPAFPEIAADLS-TPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN--IETLL 97 (385)
T ss_pred HHHhcccHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--HHHHH
Confidence 4445777899999988 89999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
+.|++.|++.+...+ ..+++.|++|+++|+++.++.+....+|..+++.+++.+ +||+.|++.++..++..+...
T Consensus 98 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (385)
T TIGR00710 98 VLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIF 177 (385)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999877 899999998888887566666
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILL 268 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (508)
+..||+++...+ ++. ++..+...+ .++++..+...+..
T Consensus 178 ~~~~~~~~~~~~--------~~~---------------------------------~~~~~~~~~-~~~~~~~~~~~~~~ 215 (385)
T TIGR00710 178 FILPETLPYEAR--------IQI---------------------------------STYFETFLL-LLKSKMFWGYALIY 215 (385)
T ss_pred HhCCCCCCCccc--------CCH---------------------------------HHHHHHHHH-HHcCchhHHHHHHH
Confidence 677776431000 000 000111222 56666544322221
Q ss_pred HHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHh
Q psy8697 269 VILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~ 346 (508)
... .........+.|.++++ .|.+.+. ........+..+++.++.+++.||+++|+.+..+..+..++.+.+.
T Consensus 216 ~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00710 216 GAS-----FGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE 290 (385)
T ss_pred HHH-----HHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 111 11234455677877764 6665544 3566667788899999999999999999988888777776665555
Q ss_pred hccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHH-HHHHHHHHhhcchh
Q psy8697 347 SNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLF-ILLYVFFSAVGVIV 425 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 425 (508)
.....+ ...+..... ..+.+.+.+. ..+
T Consensus 291 -----------------~~~~~~---------------------------------~~~~~~~~~~~~~~g~~~~~-~~~ 319 (385)
T TIGR00710 291 -----------------ITAILG---------------------------------LGSWAMIIGPMMFVGIGNSM-ISS 319 (385)
T ss_pred -----------------HHHHhc---------------------------------cchHHHHHHHHHHHHHHHHH-HHH
Confidence 211100 011222222 2222222222 344
Q ss_pred hhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 426 IPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 426 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
.......|..| +.++++.++.+...+.++.+.+.+.+.+.+.
T Consensus 320 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 320 IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55577788777 5689999999999887666766666644433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=244.72 Aligned_cols=339 Identities=13% Similarity=0.030 Sum_probs=243.9
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
...|.+|.+.++++ .|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++ ++.++++
T Consensus 24 ~~~~~lp~~~~~~~-~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~ 100 (381)
T PRK03633 24 VLNTLVPLWLAQEH-LPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVG--FWSWLAW 100 (381)
T ss_pred hHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHH
Confidence 34677899989887 89999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhhhhcC
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLVLICFA 191 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~~l 191 (508)
|+++|++.+...+ ....+.|..++++|++++++++.+.++|..+|+.+++.+ .++...+..+........+.....
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (381)
T PRK03633 101 RFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAILPLLFTRI 180 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999988 888888999999999999999999999999999999887 122223332222222111111112
Q ss_pred CCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHH
Q psy8697 192 PESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVIL 271 (508)
Q Consensus 192 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (508)
+|++ + ++ + +.++..+ .++++..+... .....
T Consensus 181 ~~~~-----~-------~~---------------------------------~--~~~~~~~-~~~~~~~~~~~-~~~~~ 211 (381)
T PRK03633 181 LNQQ-----A-------EN---------------------------------H--DSTSIWP-MLKLRQARLGV-NGCII 211 (381)
T ss_pred cCCC-----C-------CC---------------------------------C--CCCCHHH-HHHhcchHHHH-HHHHH
Confidence 2210 0 00 0 0011122 55555544211 11111
Q ss_pred HHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccc
Q psy8697 272 FTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLL 350 (508)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~ 350 (508)
... .......+.|.+.++.|.+.+. ........+..+++++..+++.||+++|+.+..+..+..++.+.+.
T Consensus 212 ~~~----~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---- 283 (381)
T PRK03633 212 SGI----VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---- 283 (381)
T ss_pred HHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh----
Confidence 111 1233456788888887776544 3556667788889999999999999999988877777666554433
Q ss_pred cccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhh
Q psy8697 351 MKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTM 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (508)
. . ........+++.+ .....|...+.
T Consensus 284 -------------~---------------------------------------~-~~~~~~~~l~g~~-~~~~~p~~~~~ 309 (381)
T PRK03633 284 -------------S---------------------------------------Q-AAMAPALFILGAA-GFTLYPVAMAW 309 (381)
T ss_pred -------------h---------------------------------------h-HHHHHHHHHHHHH-HHhHHHHHHHH
Confidence 1 1 1111122222222 22345666688
Q ss_pred hhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhee
Q psy8697 431 ISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFV 488 (508)
Q Consensus 431 ~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 488 (508)
+.|..|++.++...+..+...++|..++|.+.|.+.|. ++.+.|.+.+.+.++..+..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 310 ACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 88999888888888888888999999999999999998 88888888888877665443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=241.68 Aligned_cols=331 Identities=13% Similarity=0.045 Sum_probs=241.5
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC-----CcchHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD-----PGNIELL 112 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~-----~~~~~~l 112 (508)
.+.+|.+..+.+ .++.+.|++.+++.++..+++++.|+++||+|||++++.+..+..++.++..+++ + ++.+
T Consensus 19 ~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 95 (365)
T TIGR00900 19 QVALPLYVLAGT-GSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLN--IWQV 95 (365)
T ss_pred HHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCc--HHHH
Confidence 445677777776 8999999999999999999999999999999999999999999999988888887 8 9999
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhh
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 187 (508)
++.|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|.++++.+++.+ +||+.|++.++..++..+..
T Consensus 96 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 96 YVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999887 89999999887776633333
Q ss_pred hhc-CCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 188 ICF-APESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 188 ~~~-l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
... .||.++. ++ ++.++ + . .++ .+..+++.+++|..+...+
T Consensus 176 ~~~~~~~~~~~--~~-------~~~~~--~--------------~------------~~~-~~~~~~~~~~~~~~~~~~~ 217 (365)
T TIGR00900 176 VSVRIPELAAS--EI-------QALSN--A--------------V------------LRD-TREGIKFVLKNPLLRTLLL 217 (365)
T ss_pred HhcccccCCCc--cc-------cccch--h--------------H------------HHH-HHhHHHHHHcCcHHHHHHH
Confidence 322 2332110 00 00000 0 0 000 0111222556665443222
Q ss_pred HHHHHHHHHhhcccchhh-hcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVI-FYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSI 343 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~ 343 (508)
....... . ..... .+.|.+.++ .|.+... .......+++.+++.++.+++.||.+||+.+..+..+.+++..
T Consensus 218 ~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 292 (365)
T TIGR00900 218 LALLFNL----V-FAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAIL 292 (365)
T ss_pred HHHHHHH----H-HHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 2221111 1 22233 677888776 6665544 4566677888899999999999999999988877776666666
Q ss_pred HHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcc
Q psy8697 344 LLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGV 423 (508)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (508)
.+. .. . .+.+...+..++.+.+.+. .
T Consensus 293 ~~~-----------------~~-~-----------------------------------~~~~~~~~~~~~~g~~~~~-~ 318 (365)
T TIGR00900 293 VVG-----------------LT-P-----------------------------------PNFPLFLVLWFAIGVGYGP-I 318 (365)
T ss_pred HHH-----------------hh-c-----------------------------------hhHHHHHHHHHHHHHHHHH-H
Confidence 655 21 0 0123333333334333333 3
Q ss_pred hhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 424 IVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 424 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
.+...++..|..|++.|+++.|+.+...+++..++|.+.|.+.|.
T Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 319 NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668999999999999999999999999999999999999875
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-28 Score=244.13 Aligned_cols=360 Identities=12% Similarity=0.067 Sum_probs=243.3
Q ss_pred HhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy8697 24 LHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL 103 (508)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~ 103 (508)
.......+....++.|.+|.+.++++ .+..+.++..+++.+++.++++++|+++||+|||++++.+..+++++++++++
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~i~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIINVVRDFN-ADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF 100 (413)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 33333355555667888999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHH
Q psy8697 104 ADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLA 178 (508)
Q Consensus 104 ~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~ 178 (508)
+++ ++.++++|+++|++.+...+ ...++.|++|+++|++++++......+|..+||.+++.+ +||+.|++.++
T Consensus 101 a~~--~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~ 178 (413)
T PRK15403 101 TTS--MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAV 178 (413)
T ss_pred cCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999 99999999999999987777 889999999999999999999999999999999999877 89999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcC
Q psy8697 179 LVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTT 258 (508)
Q Consensus 179 ~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (508)
+.++..+..++.+||+++. + ++..+ .++..+.+.+ .+++
T Consensus 179 ~~~i~~~~~~~~lp~~~~~---~-------~~~~~------------------------------~~~~~~~~~~-ll~~ 217 (413)
T PRK15403 179 MGLIAFVGLLLAMPETVKR---G-------AVPFS------------------------------AKSVLRDFRN-VFRN 217 (413)
T ss_pred HHHHHHHHHHHhCCCCccc---c-------CCCCC------------------------------hHHHHHHHHH-HHcC
Confidence 8888555556678887431 0 00000 0001112223 6777
Q ss_pred cccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhh-HHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhh
Q psy8697 259 RECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDES-HALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAA 336 (508)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~ 336 (508)
|.++...+.... .......+..+.|.++++ .|++.... ........+.++++.+.+.+.++..+++.......
T Consensus 218 ~~~~~~~l~~~~-----~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 292 (413)
T PRK15403 218 RLFLTGAATLSL-----SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVP 292 (413)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 655542222211 122234556677888887 46665543 44444556666777777776554444443333223
Q ss_pred HHHHHHHHHhhccccccccccccccCcccc-ccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHH
Q psy8697 337 GLGVSSILLSSNLLMKSTFTNCAIQSNEYL-VTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLY 415 (508)
Q Consensus 337 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (508)
+..++.+++. ... ..+ ...+.......++
T Consensus 293 ~~~ig~~l~~-----------------~~~~~~~---------------------------------~~~~~~~~~~~l~ 322 (413)
T PRK15403 293 IQLVGLALLI-----------------VGNLLWP---------------------------------HVWLWSVLGTSLY 322 (413)
T ss_pred HHHHHHHHHH-----------------HHHHHcc---------------------------------ccHHHHHHHHHHH
Confidence 3333333222 100 000 0211223333333
Q ss_pred HHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHh
Q psy8697 416 VFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTL 484 (508)
Q Consensus 416 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~ 484 (508)
..+.+... |......-+ -....+|++.++.+.....+...++...+++.+.+....|...+++..+.
T Consensus 323 ~~G~~~~~-p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 323 AFGIGLIF-PTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHh-HHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 33333332 222222211 12234799999999999999999999999988886666666655555444
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=243.63 Aligned_cols=262 Identities=20% Similarity=0.229 Sum_probs=201.7
Q ss_pred hhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHH
Q psy8697 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLY 113 (508)
Q Consensus 34 ~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~ 113 (508)
...+.+.+|.+.++.+ .++.+.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.++...+++ ++.++
T Consensus 19 ~~~~~~~lp~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~--~~~~~ 95 (392)
T PRK10473 19 IDMYLVGLPRIAADLN-ASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET--SSLFL 95 (392)
T ss_pred HHHHhhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc--HHHHH
Confidence 3345677999989887 89999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
+.|+++|++.+...+ ..+++.|++|+++|+++.++.+....+|..++|.++..+ +||+.|++.+++.++..++..
T Consensus 96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 175 (392)
T PRK10473 96 AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL 175 (392)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999998776 899999999988887666666
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILL 268 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (508)
+.+||+++.. + ++.. +..+...+ .++++..+...+..
T Consensus 176 ~~~~~~~~~~--~-------~~~~---------------------------------~~~~~~~~-~~~~~~~~~~~~~~ 212 (392)
T PRK10473 176 FILKETRPAR--A-------PAAS---------------------------------SKPRENSE-SLLNRFFLSRLVIT 212 (392)
T ss_pred HHcCCCCCcc--c-------CCcc---------------------------------chHHHHHH-HHhCHHHHHHHHHH
Confidence 7778864210 0 0000 00001112 44555433322222
Q ss_pred HHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHh
Q psy8697 269 VILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~ 346 (508)
...... ......+.|.++.+ .|++.+. .......++..+++.++.+++.||+|||+.+..+..+..++.+.+.
T Consensus 213 ~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 287 (392)
T PRK10473 213 TLSVTV-----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA 287 (392)
T ss_pred HHHHHH-----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 221111 12234455666554 6776544 3556677888889999999999999999998888887777766666
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=240.26 Aligned_cols=350 Identities=14% Similarity=0.124 Sum_probs=237.0
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHH---h-cCCcchHHHHHHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTI---L-ADPGNIELLYLSK 116 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~---~-~~~~~~~~l~~~r 116 (508)
++.+.++++ .++.+.|++.+.+.++..+++++.|+++||+||||++..+..+.+++++++. . .++ ++.+++.|
T Consensus 36 ~~~~~~~~g-~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 112 (402)
T TIGR00897 36 LSPFLKALG-LSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHAN--YPLILLFY 112 (402)
T ss_pred HHHHHHHhC-CCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCcc--HHHHHHHH
Confidence 455556776 8999999999999999999999999999999999999999999999877653 3 246 88899999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHH-HHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGI-LLTTILNLYL----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~-~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
++.|++.+...+ ...++.|++|+++|++++++.+.+.++|. .+++.+++.+ ||+..++.......+..++..++
T Consensus 113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 192 (402)
T TIGR00897 113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFS 192 (402)
T ss_pred HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999988888 88899999999999999999999999997 5788888765 76555554443333323333444
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHH
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVI 270 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
.+|.++. +++ +++++ .++..+...+ ++++|..+...+.
T Consensus 193 ~~~~~~~--~~~------~~~~~------------------------------~~~~~~~~~~-~~~~~~~~~~~~~--- 230 (402)
T TIGR00897 193 NKDIFTP--QHM------QTREK------------------------------FSELGKAATI-LFTNPNVLLGGMV--- 230 (402)
T ss_pred cCCCCCc--ccc------cCCcc------------------------------hhhHHHHHHH-HHcChhHHHHHHH---
Confidence 4543210 000 00000 0000111122 6666654332211
Q ss_pred HHHHHhhcccchhhhcHHHHHHHhCCcchhh-HHHHHHHHHHHHHHHHHHHhhcccCCeeehh-hhhhHHHHHHHHHhhc
Q psy8697 271 LFTLQQFTGVYPVIFYAMQLFKEVGTEIDES-HALVFLGIIRFGMSVVTTVLARGFGRKQLLI-VSAAGLGVSSILLSSN 348 (508)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~-~~~~~~~~~~~~l~~~ 348 (508)
.+.+....+....|.|.+.++.|++.... .......++.+++++..|+++||++||+.+. .+.....++.+.+.
T Consensus 231 --~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~-- 306 (402)
T TIGR00897 231 --RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALY-- 306 (402)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH--
Confidence 22222335567788999998888766553 4555677889999999999999999888653 23333333332222
Q ss_pred cccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhH
Q psy8697 349 LLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPW 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (508)
...... ....+...+...+.+.+.. ...+. .
T Consensus 307 ---------------~~~~~~--------------------------------~~~~~~~~~~~~~~G~~~~-~~~~~-~ 337 (402)
T TIGR00897 307 ---------------YIPQHF--------------------------------GHSFAVALIIAIALGIFLA-GYVPL-A 337 (402)
T ss_pred ---------------HHHHcc--------------------------------CCcHHHHHHHHHHHHHHHH-HHHHH-H
Confidence 110000 0022223333333333332 23343 3
Q ss_pred hhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeE
Q psy8697 429 TMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 429 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 489 (508)
....|..| +.||++.|+.+....+++.++|.+.|.+.+. |+...+++.+++.+++.++..
T Consensus 338 ~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 338 AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 55667655 5899999999999999999999999999998 988899988888877655443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=240.87 Aligned_cols=329 Identities=22% Similarity=0.278 Sum_probs=239.2
Q ss_pred hHHHHh-hhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 37 YLVYLK-YLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 37 ~~~~~~-~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
..+.+| .+.++++ .++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++ ++.++++
T Consensus 15 ~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (352)
T PF07690_consen 15 ISPALPLYLAEELG-LSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASN--FWLLLIA 91 (352)
T ss_dssp HHHHHH-HHHCCST-TTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHH
T ss_pred HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhh--HHHHhhh
Confidence 455677 7888888 99999999999999999999999999999999999999999999999777777777 8899999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
|++.|++.+...+ ..+++.|++|+++|++++++.+....+|.++++.+++.+ +||+.|++.+++.++..++...+
T Consensus 92 ~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~ 171 (352)
T PF07690_consen 92 RFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILF 171 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhh
Confidence 9999999999999 999999999999999999999999999999999999988 89999999999999865554566
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHH
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVI 270 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
++++|+....++ +++++ .++++...+.++...+++..| ..+....
T Consensus 172 ~~~~~~~~~~~~------~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 216 (352)
T PF07690_consen 172 LPEPPPPRERES------PKESE----------------------------SKKPKPLKPGFKSLFKNPVLW-ILLIAFF 216 (352)
T ss_dssp C---STTTT--S------STTTT------------------------------HHHCCCH-CTHHHHHHCCH-HHHHHHH
T ss_pred hhhccccccccc------ccccc----------------------------cccccccccccccccccchhh-hhhhhhh
Confidence 666543211110 00000 000111111122144445444 1222222
Q ss_pred HHHHHhhcccchhhhcHHHH-HHHhCCc-chh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhh
Q psy8697 271 LFTLQQFTGVYPVIFYAMQL-FKEVGTE-IDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSS 347 (508)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~ 347 (508)
... ........+.|.+ .++.|.+ ... .......++..+++.++.+++.||+++|+..........+..+.+.
T Consensus 217 ~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 291 (352)
T PF07690_consen 217 LFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL- 291 (352)
T ss_dssp HHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH-
Confidence 221 1234477888887 4446666 222 3557777888888899999999999998887777777777776666
Q ss_pred ccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhh
Q psy8697 348 NLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIP 427 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (508)
..... .+.........+.+.+.+. ..+..
T Consensus 292 ----------------~~~~~----------------------------------~~~~~~~~~~~~~g~~~~~-~~~~~ 320 (352)
T PF07690_consen 292 ----------------LLPFS----------------------------------SSPVWLIIALFLIGFGFGI-VFPIL 320 (352)
T ss_dssp ----------------CSHHH----------------------------------CHHHHHHHHHHHHHHHHHH-HCHHH
T ss_pred ----------------HHHHh----------------------------------hhHHHHHHHHHHHHHHHHH-HHHHH
Confidence 32221 0223333333444443333 45666
Q ss_pred HhhhhccCcccchhhHHHHHHHHHHHHHHHHH
Q psy8697 428 WTMISELLPSYARGVCSGLMISYGYVCMFFMV 459 (508)
Q Consensus 428 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~ 459 (508)
..+..|..|++.||++.|+.+...+++..++|
T Consensus 321 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 321 FSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 79999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=252.94 Aligned_cols=372 Identities=14% Similarity=0.111 Sum_probs=249.1
Q ss_pred hhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcch
Q psy8697 30 RWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNI 109 (508)
Q Consensus 30 ~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~ 109 (508)
.+.........+|.+.++++ .+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++++++++ +
T Consensus 31 ~~~~~~~~~~~~~~i~~~~g-~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~ 107 (455)
T TIGR00892 31 SYAFPKAVTVFFKELQQIFQ-ATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN--V 107 (455)
T ss_pred HHhhhcchhhhHHHHHHHhC-cchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh--H
Confidence 33344445777899999988 89999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHH-HHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHH
Q psy8697 110 ELLYL-SKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLIS 183 (508)
Q Consensus 110 ~~l~~-~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~ 183 (508)
+.+++ .|++.|++.+...+ ...++.++++ ++|+++.++.+.+..+|..++|.+++.+ |||+.|++.+++.++.
T Consensus 108 ~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~ 186 (455)
T TIGR00892 108 IELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHC 186 (455)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 88865 57999999998767 8888899885 7899999999999999999999988876 8999999999988774
Q ss_pred HHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccch
Q psy8697 184 GLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYK 263 (508)
Q Consensus 184 ~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (508)
.+..++..++.+.....+ .++ ++ ....+.... +. + .+...++..+...++ .++++.++.
T Consensus 187 ~v~~~~~~~~~~~~~~~~---------~~~-~~---~~~~~~~~~-~~-----~-~~~~~~~~~~~~~~~-~~~~~~~~~ 245 (455)
T TIGR00892 187 CVCGALMRPVGPSQRVSK---------SKS-KE---GLPPDGSTK-KL-----S-KKSTAEKINRFLDFS-LFTHRGFLV 245 (455)
T ss_pred HHHHHHhCCCCccccccc---------ccc-cc---cCCCCCccc-cc-----c-ccchhhhhhhhcchH-HhcCchHHH
Confidence 444344433322100000 000 00 000000000 00 0 000000000011123 566665433
Q ss_pred hHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhccc--CCeeehhhhh--hHH
Q psy8697 264 PLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGF--GRKQLLIVSA--AGL 338 (508)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~~~--~~~ 338 (508)
.... .+ ....+......+.|.+.++.|++... .......+++.++++++.+++.||. ++|+....+. .+.
T Consensus 246 ~~~~----~~-l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 246 YLSG----NV-IMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred HHHH----HH-HHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 2211 11 11222445567888888887776544 4666677888889999999999974 3333333322 222
Q ss_pred HHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHH
Q psy8697 339 GVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFF 418 (508)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (508)
+++.+... . . .+.+...+..++.+.+
T Consensus 321 ~l~~ll~~-----------------~---~----------------------------------~~~~~~~i~~~~~G~~ 346 (455)
T TIGR00892 321 GLTHLLCA-----------------L---A----------------------------------GDYTGLVIYCIFFGLS 346 (455)
T ss_pred HHHHHHHH-----------------H---h----------------------------------chHHHHHHHHHHHHHH
Confidence 23222222 1 0 1223333333334333
Q ss_pred HhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhh
Q psy8697 419 SAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVG 486 (508)
Q Consensus 419 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~ 486 (508)
.+ ...+...+.+.|.+|++.++++.|+.+....+|++++|.+.|.+.+. ++...|.+.+++.+++.+
T Consensus 347 ~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 347 FG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 33 33455568888999999999999999999999999999999999987 477888877776666544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=238.24 Aligned_cols=343 Identities=15% Similarity=0.137 Sum_probs=239.7
Q ss_pred HHHHhh-hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHH-HHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 38 LVYLKY-LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLI-LVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 38 ~~~~~~-i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~-~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
.|.+|. ++++++ .++.+.|++.+.+.++..+.+++.|+++||+||||.++ .+..+..++.++++++++ ++.+++.
T Consensus 17 ~~~l~~~l~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~ 93 (375)
T TIGR00899 17 FPTLSLFLSEEVR-ARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRN--YFLLLVL 93 (375)
T ss_pred hhHHHHHHHcccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcch--HHHHHHH
Confidence 444654 566777 89999999999999999999999999999999988755 466666778888999999 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhH--HHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAI--LCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~--~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
|++.|.+.+...| ..++..|+.|+++|++. .+....+.++|..+++.+++.+ +||+.|++.+++.++..++.+
T Consensus 94 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~ 173 (375)
T TIGR00899 94 GVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVW 173 (375)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888 88999999888877754 5777888889999999988877 899999999988887566666
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILL 268 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (508)
+++||+|++..++ .+ . .+..+ .+++++.+......
T Consensus 174 ~~~~~~~~~~~~~-------~~----------------------------------~---~~~~~-~~~~~~~~~~~~~~ 208 (375)
T TIGR00899 174 LFLPSYPRGAPGA-------LT----------------------------------R---LEVRG-LLASRDTRLLFVAC 208 (375)
T ss_pred HhCCCcccCcccc-------cC----------------------------------c---chhhh-hhcCcchHHHHHHH
Confidence 7789876421000 00 0 00001 33344333211111
Q ss_pred HHHHHHHhhcccchhhhcHHHHHHH-hCCcchhh-HHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHh
Q psy8697 269 VILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDES-HALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~ 346 (508)
.. ... .......+.|.++++ .|.+.... ..........+++.++.+++.||+|||+.+..+..+..+....+.
T Consensus 209 ~~-~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 283 (375)
T TIGR00899 209 TL-MWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLA 283 (375)
T ss_pred HH-HHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 11 111 122234456666654 56655443 334444456677888999999999999988776665544443333
Q ss_pred hccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhh
Q psy8697 347 SNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVI 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (508)
. . ++.+.......+.+.+.+. ..+.
T Consensus 284 -----------------~-~------------------------------------~~~~~~~~~~~~~g~~~g~-~~~~ 308 (375)
T TIGR00899 284 -----------------A-D------------------------------------NSLWALLMLQLLNAIFIGI-LAGI 308 (375)
T ss_pred -----------------H-H------------------------------------HHHHHHHHHHHHHHHHHHH-HHHH
Confidence 1 0 0222232222333333332 3455
Q ss_pred hHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeE
Q psy8697 427 PWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 427 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 489 (508)
...+..|..|++ ++++.++.+...++|..++|.+.|.+.+. |+...+.+.+++.+++.++..
T Consensus 309 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 309 GMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 567888988865 57999999999999999999999999998 898889888888777765543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=245.22 Aligned_cols=370 Identities=15% Similarity=0.121 Sum_probs=251.1
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
...+.+|.+.++++ .++.+.+++.+.+.++..++.+++|+++||+|||++++.+..+.+++.++++++++ ++.++++
T Consensus 28 ~~~~~~p~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~ 104 (471)
T PRK10504 28 IVNTALPSMAQSLG-ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGT--LNELLLA 104 (471)
T ss_pred HHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHH
Confidence 34567888888887 89999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
|+++|++.+...+ ..+++.|++|+++|+++.++.....++|..++|.+++.+ +||+.|++......+..+.....
T Consensus 105 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 105 RVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999999999999999999999999999999877 89999999888777755555556
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHH-HH--HhCChhh--hHHHHHH--------HHHhhhhhhhhhhhHHHHHHHhc
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSL-KF--LNRNPEI--FEKEWRV--------LCQVRTRYDETRNKKALWRQILT 257 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
.|+.+.. +.+. +..+......... .. ..+.+.. ....... ......+++..++.....+ +++
T Consensus 185 ~~~~~~~---~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 259 (471)
T PRK10504 185 MPNYTMQ---TRRF-DLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLK-LFR 259 (471)
T ss_pred CCCcccc---CCCC-ChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-Hhc
Confidence 6654321 1000 0000000000000 00 0010000 0000000 0000000001111122234 677
Q ss_pred CcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhh
Q psy8697 258 TRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSA 335 (508)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~ 335 (508)
++.++......++.. .+......+.|.+++. .|.+... ........+..+++.++.+++.||+|||+.+..+.
T Consensus 260 ~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~ 334 (471)
T PRK10504 260 TRTFSLGLAGSFAGR-----IGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATT 334 (471)
T ss_pred ccchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 776544222222111 1233455677888875 6665544 34555566667777889999999999999998888
Q ss_pred hHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHH
Q psy8697 336 AGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLY 415 (508)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (508)
.+.++...++. ..... ...+.......+.
T Consensus 335 ~~~~~~~~~~~-----------------~~~~~----------------------------------~~~~~~~~~~~~~ 363 (471)
T PRK10504 335 LGLALVSLLFM-----------------LVALL----------------------------------GWYYLLPFVLFLQ 363 (471)
T ss_pred HHHHHHHHHHH-----------------hcccc----------------------------------ccHHHHHHHHHHH
Confidence 87777766665 32110 0111122222222
Q ss_pred HHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-cc
Q psy8697 416 VFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SV 470 (508)
Q Consensus 416 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~ 470 (508)
+.+.+... +.......+..|++.++.+.|+.+....+|..+++.+.|.+.+. ++
T Consensus 364 g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 364 GMVNSTRF-SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHH-HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 23333333 33447788889999999999999999999999999999999887 54
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=238.48 Aligned_cols=258 Identities=14% Similarity=0.241 Sum_probs=199.0
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
++.|.+|.+.++++ .++.+.+++.+.+.++..++++++|+++||+|||+++..+..+.+++.+++.++++ ++.+++.
T Consensus 9 ~~~p~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~ 85 (377)
T PRK11102 9 MYLPALPVIAADFG-VSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT--IDQLIYM 85 (377)
T ss_pred HHhccHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc--HHHHHHH
Confidence 45678999989887 99999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
|++.|++.+...+ ..+++.|++|+++|++++++.+....+|..++|.+++.+ +||+.|++.+++.++..++..++
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999999999999999999999999999998877 89999999888888756666677
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHH
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVI 270 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
+||+++.. + +++.+ .++..+...+ .++++..+...+
T Consensus 166 ~~~~~~~~--~-------~~~~~------------------------------~~~~~~~~~~-~~~~~~~~~~~~---- 201 (377)
T PRK11102 166 IPETLPKE--R-------RQPFH------------------------------LRTTIRNFAS-LFRHKRVLGYML---- 201 (377)
T ss_pred CCccCccc--c-------cCCCC------------------------------hHHHHHHHHH-HHcChHHHHHHH----
Confidence 78764210 0 00000 0000111222 555554332111
Q ss_pred HHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHH
Q psy8697 271 LFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVS 341 (508)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 341 (508)
.......+.+....+.|.++.+ .|.+.+. ........++.+++.++.+++.||+|||+.+..+..+..+.
T Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 202 -ASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIM 273 (377)
T ss_pred -HHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 1112222234455566766655 6766544 45666777888899999999999999999888777654443
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-28 Score=243.58 Aligned_cols=360 Identities=16% Similarity=0.178 Sum_probs=265.4
Q ss_pred cccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhH
Q psy8697 47 HYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMS 126 (508)
Q Consensus 47 ~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~ 126 (508)
+++ .++.+.|++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++...+.+.+++.+++.|+++|++.|..
T Consensus 67 ~~~-ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 67 EYD-WSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred eec-CCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 455 7889999999999999999999999999999999999999999999999999987655678899999999999999
Q ss_pred HH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhh
Q psy8697 127 TV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICFAPESPHWLIN 200 (508)
Q Consensus 127 ~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~ 200 (508)
.| ...+.+.|.|++||++..++...+..+|.+++-++++++ ||+.+|++.++++++..++..++..|+|.....
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~ 225 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN 225 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 99 999999999999999999999999999999999988888 899999999999999777777888888864111
Q ss_pred cccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhccc
Q psy8697 201 MDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGV 280 (508)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (508)
- ..+| .+.+++...+++.+++.+.+|+.+++++..| ...+..+....+.
T Consensus 226 i--------s~~E------------------l~~I~~~k~~~~~~~~~~vP~~~i~ts~~vw-----ai~~~~f~~~~~~ 274 (466)
T KOG2532|consen 226 I--------SEKE------------------LKYIEKGKSEAHVKKKPPVPYKAILTSPPVW-----AIWISAFGGNWGF 274 (466)
T ss_pred C--------CHHH------------------HHHHHhcccccccCCCCCCCHHHHHcCHHHH-----HHHHHHHHHHHHH
Confidence 1 1111 1122222211111221334444488888544 3444444444557
Q ss_pred chhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCe---------eehhhhhhHHHHHHHHHhhcc
Q psy8697 281 YPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRK---------QLLIVSAAGLGVSSILLSSNL 349 (508)
Q Consensus 281 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr---------~~l~~~~~~~~~~~~~l~~~~ 349 (508)
+.+..|.|.|+++ .|++... .....+..+...+..+++|.++||+.+| ..-.++....++.++.++
T Consensus 275 ~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~--- 351 (466)
T KOG2532|consen 275 YLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA--- 351 (466)
T ss_pred HHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee---
Confidence 8899999999998 7787766 4777788899999999999999998663 122233444444444444
Q ss_pred ccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHh
Q psy8697 350 LMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWT 429 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (508)
. .+.+ ..+..++++.+.....+..... .+.
T Consensus 352 --------------~---~~~~--------------------------------~~~~a~~~l~~~~~~~g~~~~G-f~~ 381 (466)
T KOG2532|consen 352 --------------F---TSDE--------------------------------HRLLAVILLTIAIGLSGFNISG-FYK 381 (466)
T ss_pred --------------e---cCCC--------------------------------cchHHHHHHHHHHHHcccchhh-hHh
Confidence 2 1110 2233333333322222222211 112
Q ss_pred hhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHh-h--h-ccchhHHHHHHHHHHhhheeEEEe
Q psy8697 430 MISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAI-H--S-SVIGTFNVFGLVSFTLVGFVYFYL 492 (508)
Q Consensus 430 ~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~-~--~-g~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
-..+. .+++-+..+|+.+....+.++++|.+.|.+. + . .|+..|.+.+++.+++.++..++-
T Consensus 382 ~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 382 NHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred hhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence 22222 4567799999999999999999999999998 3 2 799999999999999876666553
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=230.29 Aligned_cols=323 Identities=25% Similarity=0.293 Sum_probs=262.4
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
..+..|.+.++.+ .++.+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.++..++++ ++.+++.|
T Consensus 18 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 94 (352)
T cd06174 18 LSPALPLLAEDLG-LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASS--LWLLLVGR 94 (352)
T ss_pred hHhhHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 4556777877776 89999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcC
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFA 191 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l 191 (508)
++.|++.+...+ ..+++.|++|+++|++.+++.+....+|..+++.+++.+ +||+.+++.+++.++..+. ..++
T Consensus 95 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 173 (352)
T cd06174 95 FLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL-LLFL 173 (352)
T ss_pred HHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 999999999999 999999999999999999999999999999999999888 7999999988888773333 3322
Q ss_pred CCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHH
Q psy8697 192 PESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVIL 271 (508)
Q Consensus 192 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (508)
+ | .+....+
T Consensus 174 ~--~---------------------------------------------------------------------~~~~~~~ 182 (352)
T cd06174 174 L--R---------------------------------------------------------------------LLLLLAL 182 (352)
T ss_pred H--H---------------------------------------------------------------------HHHHHHH
Confidence 2 0 0111112
Q ss_pred HHHHhhcccchhhhcHHHHHHHh-CCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCee-ehhhhhhHHHHHHHHHhhc
Q psy8697 272 FTLQQFTGVYPVIFYAMQLFKEV-GTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQ-LLIVSAAGLGVSSILLSSN 348 (508)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~-~l~~~~~~~~~~~~~l~~~ 348 (508)
..+...........+.|.+.++. |.+... .......++..+++.++.+++.||++||+ .+..+..+..++.+.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 260 (352)
T cd06174 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-- 260 (352)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--
Confidence 22222333556677888888874 665444 46777888899999999999999999999 88888888888887777
Q ss_pred cccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhH
Q psy8697 349 LLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPW 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (508)
.. .+.+.......+.+.+ .....+...
T Consensus 261 ---------------~~-------------------------------------~~~~~~~~~~~~~g~~-~~~~~~~~~ 287 (352)
T cd06174 261 ---------------LA-------------------------------------PSLALLLVALLLLGFG-LGFAFPALL 287 (352)
T ss_pred ---------------Hh-------------------------------------ccHHHHHHHHHHHHHH-HhccchhHH
Confidence 31 1223333333333333 334456677
Q ss_pred hhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeE
Q psy8697 429 TMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 429 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 489 (508)
.+..|..|++.|++..|+.+....++..+++.+.+.+.+. ++...+.+.+++.+++.+..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999999999999999988 999999999988888766554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-27 Score=235.57 Aligned_cols=347 Identities=21% Similarity=0.234 Sum_probs=231.2
Q ss_pred hhHHHHhhhccccc-ccCCccchhHHHH-----HHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcch
Q psy8697 36 YYLVYLKYLTRHYI-VMFGSHFGPTTSF-----VIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNI 109 (508)
Q Consensus 36 ~~~~~~~~i~~~~~-~~s~~~~g~~~s~-----~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~ 109 (508)
.+.+..+.+.+++. +.++.+.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.++++++++ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~ 88 (394)
T TIGR00883 11 LYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPS--Y 88 (394)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCC--h
Confidence 33444555555543 2445666655443 34455678999999999999999999999999999999999998 6
Q ss_pred H--------HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------------h
Q psy8697 110 E--------LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL------------D 168 (508)
Q Consensus 110 ~--------~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l------------~ 168 (508)
+ .++++|+++|++.+...+ ...++.|++++++|++..++.+.+..+|.++++.++..+ +
T Consensus 89 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~ 168 (394)
T TIGR00883 89 ATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWG 168 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccc
Confidence 5 488999999999999999 999999999999999999999999999999998876432 7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhh
Q psy8697 169 WRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNK 248 (508)
Q Consensus 169 wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (508)
||+.|++.+++.++ ........||+|++..++ ++ +++..
T Consensus 169 w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~---------------------------------~~~~~ 207 (394)
T TIGR00883 169 WRIPFLVSAVLVLI-GLYLRRNLEETPVFEKAQ-------EK---------------------------------HKKKR 207 (394)
T ss_pred hHHHHHHHHHHHHH-HHHHHHhcCCChhHHHHH-------hc---------------------------------ccccc
Confidence 99999988777666 455555667765321100 00 00001
Q ss_pred HHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccC
Q psy8697 249 KALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFG 326 (508)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~g 326 (508)
++..+ .+++++ ++......... ...........+.|.++++ .|.+.+. ........+..+++.++.+++.||+|
T Consensus 208 ~~~~~-~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 283 (394)
T TIGR00883 208 GPIRE-TLTKHR--KPFLLGLGLVI-ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIG 283 (394)
T ss_pred CCHHH-HHHhch--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11122 344332 11222222222 2222345566788888855 6665544 35566677888899999999999999
Q ss_pred CeeehhhhhhHHHHHH-HHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcc
Q psy8697 327 RKQLLIVSAAGLGVSS-ILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSD 405 (508)
Q Consensus 327 rr~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (508)
||+.+.....+..+.. ..+. ..... ...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~----------------------------------~~~ 312 (394)
T TIGR00883 284 RRPVLIIFTVLAALLAVPLLM-----------------ALLDS----------------------------------GSF 312 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----------------HHhcC----------------------------------Cch
Confidence 9997765544443332 2222 11100 122
Q ss_pred hHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHH-HHHHHHHHHHHHHhHHHhhh-c-cchhHHHHHHHH
Q psy8697 406 WLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMI-SYGYVCMFFMVKAFPFAIHS-S-VIGTFNVFGLVS 481 (508)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~g~~i~~~~~g~l~~~-g-~~~~~~~~~~~~ 481 (508)
+.......+...+.+. ..+...+++.|.+|++.|+++.++.+ ....+|..++|.+.|.+.+. | +...++..+.+.
T Consensus 313 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 313 TLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 3333333333333333 34555689999999999999999854 44667888999999999998 6 555554444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=232.82 Aligned_cols=331 Identities=14% Similarity=0.128 Sum_probs=237.0
Q ss_pred chhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHH
Q psy8697 33 GLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELL 112 (508)
Q Consensus 33 ~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l 112 (508)
...++.|.+|.+.++++ .++++.+++.+++.++..++++++|+++||+|||+++..+..+..++.++..++++ ++.+
T Consensus 21 ~~~~~~p~~~~i~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l 97 (401)
T PRK11043 21 ATDMYLPAFKAIQADLQ-TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES--AAQL 97 (401)
T ss_pred HHHHHHhhHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC--HHHH
Confidence 34456788899988888 89999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhh
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 187 (508)
++.|+++|++.+...+ ..+++.|+++++++++..+.......+|..++|.+++.+ +||+.|++.+++.++..+ .
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~-~ 176 (401)
T PRK11043 98 LVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLIL-P 176 (401)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-H
Confidence 9999999999988888 889999999999999999998888889999999988877 999999999888887443 4
Q ss_pred hhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHH
Q psy8697 188 ICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLIL 267 (508)
Q Consensus 188 ~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (508)
.++++|+++. ++.+ +...+..+ .++++..+...+.
T Consensus 177 ~~~~~~~~~~-----------~~~~---------------------------------~~~~~~~~-~~~~~~~~~~~~~ 211 (401)
T PRK11043 177 TLRLKPSKKA-----------RKQS---------------------------------QDALTFKQ-LLKSKTYLGNVLI 211 (401)
T ss_pred HHHcCCCCCc-----------cccc---------------------------------hHHHHHHH-HHcChhHHHHHHH
Confidence 4445554320 0000 00111222 5566554432222
Q ss_pred HHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHh
Q psy8697 268 LVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~ 346 (508)
..... ........+.|.++++.|++... ........++..+++++.+++.||+++|+..........++.+.+.
T Consensus 212 ~~~~~-----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~ 286 (401)
T PRK11043 212 FAACS-----AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIW 286 (401)
T ss_pred HHHHH-----HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 21111 11334556788888877776544 3444555677788899999999999998876655555544443332
Q ss_pred hccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhh
Q psy8697 347 SNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVI 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (508)
...... ....+.......+...+.+ ...+.
T Consensus 287 -----------------~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~ 316 (401)
T PRK11043 287 -----------------LASLLS--------------------------------HPSLVPLLIPFCVMAAANG-AIYPI 316 (401)
T ss_pred -----------------HHHHhc--------------------------------cCcHHHHHHHHHHHHHHHH-HHHHH
Confidence 111100 0022222222223333332 33455
Q ss_pred hHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 427 PWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 427 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
......|..| +.+|++.|+.+..+..++..++.+.|.+.+.
T Consensus 317 ~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 317 VVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5566667666 4789999999999999999999999988876
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=232.78 Aligned_cols=346 Identities=12% Similarity=0.041 Sum_probs=234.6
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhh
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAG 120 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G 120 (508)
.+.+.++.+ .++.+.+++.+.+.+++.++++++|+++||+|||++++.+..+.+++++++.++.+ . ++.|+++|
T Consensus 26 ~~~~~~~~~-~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~--~---~~~r~l~G 99 (393)
T PRK11195 26 AIALLKELH-YPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH--P---LLAYGLVG 99 (393)
T ss_pred HHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH--H---HHHHHHHH
Confidence 445566766 78889999999999999999999999999999999999999999999998888776 4 78899999
Q ss_pred cchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhhhhcCCCCch
Q psy8697 121 IGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLVLICFAPESPH 196 (508)
Q Consensus 121 ~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~~l~esp~ 196 (508)
++.+...| ..+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.+.+...++ .++..+.+||+|+
T Consensus 100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~~~ 178 (393)
T PRK11195 100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLL-AALFNLFIPRLGA 178 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcc
Confidence 99999999 999999999999999999999999999999999999988 566666655554444 4455567888753
Q ss_pred hhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHh
Q psy8697 197 WLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQ 276 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (508)
....+ +.+. .+.. ++. .+. ++.++++|..+............
T Consensus 179 ~~~~~-------~~~~--~~~~--------------~~~------------~~~-~~~l~~~~~~~~~~~~~~~~~~~-- 220 (393)
T PRK11195 179 RRPGQ-------SWNP--IALL--------------RDF------------FHA-CRVLWRDKLGRFSLAGTTLFWGA-- 220 (393)
T ss_pred ccccc-------CCCH--HHHH--------------HHH------------HHH-HHHHHhCchhHHHHHHHHHHHHH--
Confidence 21100 0000 0000 000 000 11256666544322222221111
Q ss_pred hcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccc
Q psy8697 277 FTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKST 354 (508)
Q Consensus 277 ~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~ 354 (508)
.....+..|.+.++ .|.+... .......+++.++++++.+++.||.++|+.+..+. +.++....+.
T Consensus 221 ---~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~-------- 288 (393)
T PRK11195 221 ---GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMA-------- 288 (393)
T ss_pred ---HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHH--------
Confidence 12233444555555 5665544 46677788889999999999999999888776664 3333333333
Q ss_pred cccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhcc
Q psy8697 355 FTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 434 (508)
. . ...+.......+.+.+.+....+ ..+...|.
T Consensus 289 ---------~---~----------------------------------~~~~~~~~~~~~~G~~~g~~~~~-~~~~~q~~ 321 (393)
T PRK11195 289 ---------L---Q----------------------------------HSLLPAYPLLILIGALGGFFVVP-MNALLQHR 321 (393)
T ss_pred ---------H---H----------------------------------hHHHHHHHHHHHHHHhhhhhhhh-HHHHHHhh
Confidence 1 0 12233333333344443433333 34677787
Q ss_pred Ccccc-hhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeEE
Q psy8697 435 LPSYA-RGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVYF 490 (508)
Q Consensus 435 ~p~~~-r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~ 490 (508)
.|++. +|++.++.+...+++..++..+.+.+...|....+.+.+...+++..+.+.
T Consensus 322 ~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 322 GHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred CcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 66654 799999999999999999999999775557666666655555555444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=226.65 Aligned_cols=359 Identities=15% Similarity=0.200 Sum_probs=276.2
Q ss_pred hhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCc-chHHHH
Q psy8697 35 FYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPG-NIELLY 113 (508)
Q Consensus 35 ~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~-~~~~l~ 113 (508)
.+.+|..+.+.++++ +|+.|.+++.++..+...+.-++.|.+.||+|.|++..++.++..+-.+..+++.+. ++++++
T Consensus 31 ~l~s~l~~~i~~~~~-LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll 109 (417)
T COG2223 31 TLFSPLGVFIKSDFG-LSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLL 109 (417)
T ss_pred HHHHHHHhhhccccC-CCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHH
Confidence 345777888888888 999999999999999999999999999999999999999999999999999999873 345999
Q ss_pred HHHHHhhcchhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----h---hHHHHHHHHHHHHHHHHh
Q psy8697 114 LSKICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----D---WRSLSYCFLALVLISGLV 186 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~---wr~~f~~~~~~~~~~~~~ 186 (508)
+.+.+.|++.+.......++++++||+++|.++|++. ..++|..+...++..+ + ||.+..+..+..++..+.
T Consensus 110 ~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~ 188 (417)
T COG2223 110 VIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVL 188 (417)
T ss_pred HHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888779999999999999999999998 7777777766666555 6 999999999988887888
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
.++...|.|+..... ++.. . ...+..+++++.|.
T Consensus 189 ~~~~~~d~p~~r~~~-------~~~~-----------------------------------~-~~~~~v~~~~~~W~--- 222 (417)
T COG2223 189 AWLGMNDVPEHRASV-------KPQL-----------------------------------P-AQLKAVFSNKDTWL--- 222 (417)
T ss_pred HHHHhCCChhhhccc-------cccc-----------------------------------h-hHHHHHhcCcchHH---
Confidence 888888887531111 0000 0 11121555665443
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSIL 344 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~ 344 (508)
+.+.++..+.++..+..+.|.++++ .|.+... ........+.+.+.+.++|+++||+|.++.+......++++...
T Consensus 223 --lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~ 300 (417)
T COG2223 223 --LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAAL 300 (417)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHH
Confidence 3444445556678899999999988 6665444 36666777888889999999999999999999999999999888
Q ss_pred HhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcch
Q psy8697 345 LSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVI 424 (508)
Q Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (508)
+. ....... ...+.+...........+.+.+-.
T Consensus 301 l~-----------------~~~~~~~------------------------------~~~~~~~~~~~~l~l~~~~G~GnG 333 (417)
T COG2223 301 LS-----------------LFLTGFG------------------------------HGGSFVVFVAVFLALFVFAGLGNG 333 (417)
T ss_pred HH-----------------ccccccc------------------------------cCcchHHHHHHHHHHHHHhccCcc
Confidence 88 3221100 011333333333444444444444
Q ss_pred hhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c-cchhHHHHHHHHHHhhheeEEEe
Q psy8697 425 VIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S-VIGTFNVFGLVSFTLVGFVYFYL 492 (508)
Q Consensus 425 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
.. +.++...+|. +-|.+.|+....+.+|++.-|..+|...+. | +...|+++..+.+++.+..+...
T Consensus 334 sv-fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 334 SV-FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred hh-eeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4777777776 458999999999999999999999999998 4 77888888888888877655433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=232.38 Aligned_cols=342 Identities=13% Similarity=0.094 Sum_probs=238.0
Q ss_pred HHHHh-hhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 38 LVYLK-YLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 38 ~~~~~-~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
.|+++ +++++.+ .++.+.|++.+...++..+.+++.|+++||+|||+++..+..+.+++.+++.++++ ++.+++.|
T Consensus 30 ~~~~~~~~~~~~g-~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 106 (400)
T PRK11646 30 FPLISIRFVDQLG-WAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE--PWLLWLSC 106 (400)
T ss_pred HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 44444 4566666 89999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhhhhcCC
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~~l~ 192 (508)
+++|++.+...+ ..+++.|++|+++|++++++.....++|..+||.+++.+ +||+.|++.++..++..++..+++|
T Consensus 107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999998889 999999999999999999999999999999999999888 9999999988877775555555566
Q ss_pred CCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHH
Q psy8697 193 ESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILF 272 (508)
Q Consensus 193 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (508)
|.+. ++ .+ + +..++..+ .+++++.+...+......
T Consensus 187 ~~~~---~~-------~~-~---------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~ 221 (400)
T PRK11646 187 AYKL---ST-------VR-T---------------------------------PVREGMTR-VLRDKRFVTYVLTLTGYY 221 (400)
T ss_pred cccc---cc-------cc-h---------------------------------hhHHHHHH-HHcCchHHHHHHHHHHHH
Confidence 5310 00 00 0 00011122 556655433221111111
Q ss_pred HHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhh-cccCCeeehhhhhhHHHHHHHHHhhccc
Q psy8697 273 TLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLA-RGFGRKQLLIVSAAGLGVSSILLSSNLL 350 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~-dr~grr~~l~~~~~~~~~~~~~l~~~~~ 350 (508)
.. ......+.|.+.++.+.+... .......++....+....++.. ||++.++.+..+..+.+++.+.+.
T Consensus 222 ~~-----~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~---- 292 (400)
T PRK11646 222 ML-----AVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG---- 292 (400)
T ss_pred HH-----HHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH----
Confidence 11 122345778888875543322 3444444444444444445544 456666666666666666665555
Q ss_pred cccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhh
Q psy8697 351 MKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTM 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (508)
.. +..+.......++..+.. ...|...++
T Consensus 293 -------------~~-------------------------------------~~~~~~~~~~~l~~~g~~-~~~p~~~~~ 321 (400)
T PRK11646 293 -------------MV-------------------------------------SNLQQLFTLICLFYIGSI-IAEPARETL 321 (400)
T ss_pred -------------Hh-------------------------------------hhHHHHHHHHHHHHHHHH-HHHccHHHH
Confidence 21 022222222233333333 233455588
Q ss_pred hhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c----cchhHHHHHHHHHHhhhe
Q psy8697 431 ISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S----VIGTFNVFGLVSFTLVGF 487 (508)
Q Consensus 431 ~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g----~~~~~~~~~~~~~~~~~~ 487 (508)
+.|..|++.||+++|+.+....+|..++|.+.|.+.|. + ....+...+++.++..+.
T Consensus 322 ~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 322 SASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999987 2 244555555555555443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=229.77 Aligned_cols=343 Identities=13% Similarity=0.083 Sum_probs=236.4
Q ss_pred hhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHH---HhcCCcchHH
Q psy8697 35 FYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLT---ILADPGNIEL 111 (508)
Q Consensus 35 ~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~---~~~~~~~~~~ 111 (508)
....+..|.++++++ +++.+.|++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+++ .++++ ++.
T Consensus 43 ~~~~~~~p~i~~~~~-~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~--~~~ 119 (438)
T PRK10133 43 NLNDILLPQFQQAFT-LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN--YTL 119 (438)
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCC--HHH
Confidence 335667899988888 999999999999999999999999999999999999999999999999886 46788 999
Q ss_pred HHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHh------------------------
Q psy8697 112 LYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY------------------------ 166 (508)
Q Consensus 112 l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~------------------------ 166 (508)
++++|+++|+|.|...+ ...++.|+.++++|.+.+++.+..+.+|..+++.++..
T Consensus 120 ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~ 199 (438)
T PRK10133 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSA 199 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHH
Confidence 99999999999999999 99999998877777778999999999999999887542
Q ss_pred ------hhhHHHHHHHHHHHH-HHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhh
Q psy8697 167 ------LDWRSLSYCFLALVL-ISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVR 239 (508)
Q Consensus 167 ------l~wr~~f~~~~~~~~-~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (508)
.+||++|+....+.. +..++.....||.+. + ++.++.
T Consensus 200 w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-------~~~~~~------------------------- 243 (438)
T PRK10133 200 YKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-------NHSDAK------------------------- 243 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-------cccccc-------------------------
Confidence 156667765443333 322222333454221 0 000000
Q ss_pred hhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHH-HH-hCCcchh-hHHHHHHHHHHHHHHH
Q psy8697 240 TRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLF-KE-VGTEIDE-SHALVFLGIIRFGMSV 316 (508)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~-~~~~~~~~~~~~~~~~ 316 (508)
+.+..+...+ ++++|.++...+.. +... ........|.+.++ ++ .|++... ........++.+++++
T Consensus 244 ----~~~~~~~~~~-ll~~~~~~~~~l~~-~~~~----~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~ 313 (438)
T PRK10133 244 ----QGSFSASLSR-LARIRHWRWAVLAQ-FCYV----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRF 313 (438)
T ss_pred ----ccchhhhHHH-HHhCchHHHHHHHH-HHHH----HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000111223 67777655422222 1111 22333445667664 44 5666554 4677788889999999
Q ss_pred HHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCcc
Q psy8697 317 VTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSC 396 (508)
Q Consensus 317 ~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
+++++.||+|+|+++..+..+..+.++... ..
T Consensus 314 ~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-----------------~~------------------------------- 345 (438)
T PRK10133 314 TGTWLISRFAPHKVLAAYALIAMALCLISA-----------------FA------------------------------- 345 (438)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-----------------Hc-------------------------------
Confidence 999999999999988887766665554444 20
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c-cchhH
Q psy8697 397 VDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S-VIGTF 474 (508)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~~~~ 474 (508)
........+.+.+.+.+. ..|..++...|..|++ .+.+.++.. ....|+.++|.+.|.+.|. | ....|
T Consensus 346 -------~~~~~~~~~~l~glg~~~-i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~ 415 (438)
T PRK10133 346 -------GGHVGLIALTLCSAFMSI-QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAE 415 (438)
T ss_pred -------CChHHHHHHHHHHHHHHH-HHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHH
Confidence 111222333334444443 4566678888887764 577888776 4557889999999999888 6 56667
Q ss_pred HHHHHHHHHh
Q psy8697 475 NVFGLVSFTL 484 (508)
Q Consensus 475 ~~~~~~~~~~ 484 (508)
++.....+..
T Consensus 416 ~v~~~~~~~~ 425 (438)
T PRK10133 416 LIPALCFAVI 425 (438)
T ss_pred HHHHHHHHHH
Confidence 6555444443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=231.83 Aligned_cols=345 Identities=10% Similarity=0.039 Sum_probs=243.7
Q ss_pred HHHHh-hhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 38 LVYLK-YLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 38 ~~~~~-~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
.|.++ +++++++ .++.+.|++.+.+.++..+++++.|+++||+|||++++.+.++..++.++.+++++ ++.+++.|
T Consensus 27 ~~~l~~~l~~~~g-~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 103 (395)
T PRK10054 27 LPFMTIYLSRQYS-LSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN--VTLVVLFF 103 (395)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH--HHHHHHHH
Confidence 44444 4556666 99999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhhhhcCC
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~~l~ 192 (508)
.+.|.+.+...+ ..++..|..|+++|+++.++.....++|..++|.+++.+ +||.+|++.++..++..++..+++|
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 183 (395)
T PRK10054 104 ALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQ 183 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888888 999999999999999999999999999999999999987 8999999988887774445555566
Q ss_pred CCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHH
Q psy8697 193 ESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILF 272 (508)
Q Consensus 193 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (508)
|+++. ++.++ + +..+..+ .+++|..+...+...+..
T Consensus 184 ~~~~~-----------~~~~~-~-------------------------------~~~~~~~-~~~~~~~~~~~~~~~l~~ 219 (395)
T PRK10054 184 RSEKA-----------IATET-G-------------------------------SVWSPSV-LLQDKALLWFTCSGFLAS 219 (395)
T ss_pred ccccc-----------cccch-h-------------------------------hhhhhhh-hccCceehHHHHHHHHHH
Confidence 54210 00000 0 0000112 666676555333322222
Q ss_pred HHHhhcccchhhhcHHHHHHHh-CCcchh---hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhc
Q psy8697 273 TLQQFTGVYPVIFYAMQLFKEV-GTEIDE---SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSN 348 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~ 348 (508)
.. ......+.+.+.... +.+.+. .......++.........+++.||.++|+.+..+..+..++...+.
T Consensus 220 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 292 (395)
T PRK10054 220 FV-----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI-- 292 (395)
T ss_pred HH-----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH--
Confidence 21 112223444444332 222222 2333334444455567888999999999988888877777776665
Q ss_pred cccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhH
Q psy8697 349 LLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPW 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (508)
.. . ++.+...+...++..+. ....|...
T Consensus 293 ---------------~~-~-----------------------------------~~~~~~~~~~~~~~~g~-~~~~p~~~ 320 (395)
T PRK10054 293 ---------------FS-G-----------------------------------NSLLLWGMSAAVFTVGE-IIYAPGEY 320 (395)
T ss_pred ---------------Hc-c-----------------------------------hHHHHHHHHHHHHHHHH-HHHHhhHH
Confidence 21 0 02222233333333332 22345556
Q ss_pred hhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeE
Q psy8697 429 TMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 429 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 489 (508)
+.+.+..|++.|+++.+..+ ..++|..+||.+.|.+.|+ |+...|.+.+.+..++.++..
T Consensus 321 ~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 321 MLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 78889999999999998755 6779999999999999999 888788777666666655444
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-28 Score=235.68 Aligned_cols=355 Identities=13% Similarity=0.066 Sum_probs=242.8
Q ss_pred hhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcch
Q psy8697 30 RWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNI 109 (508)
Q Consensus 30 ~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~ 109 (508)
...+.....-..+.+++.++ ++++..|++.+.+.+.+.+++|++|+++|||.||+++.+|..+|.++.++++++.. |
T Consensus 45 ny~Dr~~iagv~~~v~~~fn-i~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~--F 121 (493)
T KOG1330|consen 45 NYADRYTIAGVLKEVQTYFN-ISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH--F 121 (493)
T ss_pred HHhhhhhhhhhhHHHHHhcC-CCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH--H
Confidence 44555554556888988888 99999999999999999999999999999999999999999999999999999988 9
Q ss_pred HHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHH
Q psy8697 110 ELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLIS 183 (508)
Q Consensus 110 ~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~ 183 (508)
|+++++|.+.|+|.+...+ ++++++|.+|+++|++.+++++.+..+|..+|.+.+..+ .||+.|++.+++++++
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~ 201 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIV 201 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999888 5999999999999998
Q ss_pred HHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccch
Q psy8697 184 GLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYK 263 (508)
Q Consensus 184 ~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (508)
+++..++.+|++|. ..++..+ +.+..++.....++.+. ..+++.+..
T Consensus 202 ~~L~~~f~~eP~rg------------a~~~~~~--------------------~~~~~~~~ts~~kDl~~-l~~~~v~v~ 248 (493)
T KOG1330|consen 202 GLLVFLFVREPERG------------ARDEVDG--------------------ENKMVKPFTSVWKDLKV-LAKIKVFVL 248 (493)
T ss_pred HHHHHhhccCcccc------------ccccccc--------------------CCcCCCCccchHHHHHH-HHccCceee
Confidence 88888999997542 1111100 00000111222333333 555565554
Q ss_pred hHHHHHHHHHHHhhcccchhhhcHHHHHHH----hCCcchhh-HHHHHHHHHHHHHHHHHHHhhcccCCe----eehhhh
Q psy8697 264 PLILLVILFTLQQFTGVYPVIFYAMQLFKE----VGTEIDES-HALVFLGIIRFGMSVVTTVLARGFGRK----QLLIVS 334 (508)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~grr----~~l~~~ 334 (508)
..+-.....+. ...+..|.|.+... .|.+.+.. ....+...++.+|.+++|.++||+.|+ ......
T Consensus 249 ~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~ 323 (493)
T KOG1330|consen 249 SSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRAS 323 (493)
T ss_pred ehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHH
Confidence 44444433332 34455566655433 34444443 566677778889999999999985321 222222
Q ss_pred hhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHH
Q psy8697 335 AAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILL 414 (508)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (508)
-+..+.+.......+. ...... .......+.+++
T Consensus 324 q~~~~~g~~~s~~~L~-------------~~~~~~---------------------------------~~s~~~~~il~~ 357 (493)
T KOG1330|consen 324 QLSAALGAPLSIPFLF-------------LFPAFT---------------------------------SSSMIFGLILFL 357 (493)
T ss_pred HHHHhhhhhHHHHHHH-------------HHHhhh---------------------------------hHHHHHHHHHHH
Confidence 2211111111110000 111110 012222222222
Q ss_pred HHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHH-HHHHHHhHHHhhh--ccc
Q psy8697 415 YVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCM-FFMVKAFPFAIHS--SVI 471 (508)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~-~i~~~~~g~l~~~--g~~ 471 (508)
++............-+..|++|++.|.+++++-..+..+.+ +-+|.+.|.+.|+ ++.
T Consensus 358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 22222222223334677899999999999999998876644 4456699999988 544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=225.59 Aligned_cols=330 Identities=15% Similarity=0.160 Sum_probs=230.9
Q ss_pred hhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHH
Q psy8697 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLY 113 (508)
Q Consensus 34 ~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~ 113 (508)
...+.|.+|.+.++++ .++.+.+++.+.+.++..++++++|+++||+|||+++..+..+..++.++..++++ ++.++
T Consensus 24 ~~~~~p~~~~i~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 100 (394)
T PRK11652 24 QTIYVPAIADMARDLN-VREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS--LTVLI 100 (394)
T ss_pred HHHHhccHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--HHHHH
Confidence 3445777899988888 99999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
+.|++.|++.+...+ ...+..|.+++++|+++.++.+.+..+|..++|.+++.+ +||+.|++.++..++..++..
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888 889999999999999999999999999999999998877 899999998887776555566
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILL 268 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (508)
++.||+++.. +++++ ..+...+ .++++..+...+..
T Consensus 181 ~~~~~~~~~~----------~~~~~---------------------------------~~~~~~~-~~~~~~~~~~~~~~ 216 (394)
T PRK11652 181 RWMPETRPAD----------ARRTR---------------------------------VLASYRT-LLSNRRFNCYLLML 216 (394)
T ss_pred HhCCccCccc----------cchhH---------------------------------HHHHHHH-HHcChHHHHHHHHH
Confidence 6778864310 00000 0111112 55555444322221
Q ss_pred HHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHh
Q psy8697 269 VILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~ 346 (508)
.... .+...+..+.+.++++ .|++... ........++.++++.+.+++.||.+++... ......++.+.+.
T Consensus 217 ~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 289 (394)
T PRK11652 217 IGTL-----AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMW 289 (394)
T ss_pred HHHH-----HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 1111 1123334455667766 5665443 3444455666777888888888888733322 2222222222211
Q ss_pred hccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhh
Q psy8697 347 SNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVI 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (508)
...... ....+.......+...+.+. ..|.
T Consensus 290 -----------------~~~~~~--------------------------------~~~~~~~~~~~~~~~~g~~~-~~~~ 319 (394)
T PRK11652 290 -----------------IPGWFG--------------------------------VMNVWTLLVPAALFFFGAGM-LFPL 319 (394)
T ss_pred -----------------HHHHhc--------------------------------cccHHHHHHHHHHHHHHHHH-HHHH
Confidence 100000 01223333333334343333 3455
Q ss_pred hHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 427 PWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 427 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
...+..|..| +.++++.++.+....+|..+++.+.+.+.+.
T Consensus 320 ~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 320 ATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5677888887 5789999999999999999999998887765
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=226.60 Aligned_cols=333 Identities=17% Similarity=0.220 Sum_probs=224.0
Q ss_pred hhchhhhHHHHhh-hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC-Ccc
Q psy8697 31 WSGLFYYLVYLKY-LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD-PGN 108 (508)
Q Consensus 31 ~~~~~~~~~~~~~-i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~-~~~ 108 (508)
......+.|.+|. ++++++ .++.+.+++.+.+.+++.+++++.|+++||+|||+.++.+.++..++.+++++++ +
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~-- 90 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLG-LSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS-- 90 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhC-CCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 3334456778885 888887 9999999999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh--------------hhHHHH-
Q psy8697 109 IELLYLSKICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL--------------DWRSLS- 173 (508)
Q Consensus 109 ~~~l~~~r~l~G~~~g~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l--------------~wr~~f- 173 (508)
++.+++.|+++|++.+...+...+++|++|+++|++++++.....++|..+++.++..+ +||+.|
T Consensus 91 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~ 170 (366)
T TIGR00886 91 YSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV 170 (366)
T ss_pred HHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence 99999999999999665433888999999999999999999866666666665555432 599999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy8697 174 YCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWR 253 (508)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (508)
+..+++..+..++...+.+|+|+...++ ++.+. + .... + .+++..+..++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-----~---~~~~----------~-----~~~~~~~~~~~ 220 (366)
T TIGR00886 171 IVPAGILLLPALLIFFVGADTPPGKPAT-------GKLSF-----K---GARW----------S-----VGTGALGDQLK 220 (366)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcccccc-------hhccc-----c---cccc----------c-----ccchhHHHHHH
Confidence 4445555554555566677765311000 00000 0 0000 0 00011113334
Q ss_pred HHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhh-HHHHHHHHHHHHHHHHHHHhhcccCCeeeh
Q psy8697 254 QILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDES-HALVFLGIIRFGMSVVTTVLARGFGRKQLL 331 (508)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~grr~~l 331 (508)
.+++++.+...+... ...........+.|.++++ .|.+.... .......+..++++++.+++.||+|+|+.+
T Consensus 221 -~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~ 294 (366)
T TIGR00886 221 -VFRDRHTWILALLYS-----VTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL 294 (366)
T ss_pred -HHhccchhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH
Confidence 666665443222211 1112234566788888876 56655443 456667778889999999999999999888
Q ss_pred hhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHH
Q psy8697 332 IVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLF 411 (508)
Q Consensus 332 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (508)
..+......+..++. ..... ....+.....
T Consensus 295 ~~~~~~~~~~~~~~~-----------------~~~~~---------------------------------~~~~~~~~~~ 324 (366)
T TIGR00886 295 LMSFLGVAMGAFLVV-----------------LGLVS---------------------------------PLSLAVFIVL 324 (366)
T ss_pred HHHHHHHHHHHHHHH-----------------hcCCC---------------------------------cchHHHHHHH
Confidence 777766666655554 21110 0012222223
Q ss_pred HHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHH
Q psy8697 412 ILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVC 454 (508)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g 454 (508)
..+...+.+.+. ...+..+.|..| +.+|++.|+.+..+++|
T Consensus 325 ~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 325 FVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 333333344433 334578888887 58899999999887765
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=230.71 Aligned_cols=354 Identities=13% Similarity=0.112 Sum_probs=238.6
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc-----cchhH-HHHHHHHHHHHHHHHHhcCCc-ch
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI-----GRKWS-LILVCVPYIISSLLTILADPG-NI 109 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~-----Grk~~-l~~~~~~~~i~~~l~~~~~~~-~~ 109 (508)
..+.+|...++.+ .+.+++|.+ +.....+ ++.+++|+++||+ ||||. ++.+.++.+++..+.++.++. ++
T Consensus 31 ~~~~l~~~l~~~g-~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l 107 (491)
T PRK11010 31 TSGTLQAWMTVEN-IDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQL 107 (491)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 3455777777776 888888886 3333333 6889999999999 99985 667777787887777776321 38
Q ss_pred HHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHH
Q psy8697 110 ELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLIS 183 (508)
Q Consensus 110 ~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~ 183 (508)
+.+.+.|++.|++.+...+ ..+++.|++|+++|+++.++...+..+|.++++.++..+ |||..|++.+++.++
T Consensus 108 ~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll- 186 (491)
T PRK11010 108 RWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIP- 186 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH-
Confidence 8899999999999999999 999999999999999999999999999999998777665 799999999988777
Q ss_pred HHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccch
Q psy8697 184 GLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYK 263 (508)
Q Consensus 184 ~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (508)
..+..+++||+++.. ++ ++. . + ++..++..+ .++++..+.
T Consensus 187 ~~l~~~~~~e~~~~~-~~-------~~~-~-~-----------------------------~~~~~~l~~-~~~~~~~~~ 226 (491)
T PRK11010 187 CIIATLLAPEPTDTI-PV-------PKT-L-E-----------------------------QAVVAPLRD-FFGRNNAWL 226 (491)
T ss_pred HHHHHHhcCCCcccc-cc-------ccc-h-h-----------------------------hhHHHHHHH-HHcCcCHHH
Confidence 444555578865310 00 000 0 0 000111222 555554333
Q ss_pred hHHHHHHHHHHHhhcccchhhhcHHHHHH-HhCCcchhh-HHH-HHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHH
Q psy8697 264 PLILLVILFTLQQFTGVYPVIFYAMQLFK-EVGTEIDES-HAL-VFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGV 340 (508)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~-~~~-~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~ 340 (508)
..... .+... +......+.+.++. +.|++.+.. ... ....++.+++.+++|+++||+|+|+.+..+.++.++
T Consensus 227 ~ll~~-~l~~~----~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l 301 (491)
T PRK11010 227 ILLLI-VLYKL----GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGV 301 (491)
T ss_pred HHHHH-HHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 22222 11111 12223345555654 477766554 333 344568889999999999999998877766555554
Q ss_pred HHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHh
Q psy8697 341 SSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSA 420 (508)
Q Consensus 341 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (508)
..+.+. ...... .+.+.......+.....+
T Consensus 302 ~~l~~~-----------------~l~~~~---------------------------------~~~~~l~~~~~l~~~~~g 331 (491)
T PRK11010 302 SNAGYW-----------------LLSITD---------------------------------KNLYSMGAAVFFENLCGG 331 (491)
T ss_pred HHHHHH-----------------HHHhcc---------------------------------ccHHHHHHHHHHHHHHHH
Confidence 443332 111100 022222222222222223
Q ss_pred hcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEE
Q psy8697 421 VGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYF 490 (508)
Q Consensus 421 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 490 (508)
.+. +..+++..+..|++.+++..|+.+....+|..+++.+.|.+.|. |+...|.+.+++++.+.+..+.
T Consensus 332 ~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 332 MGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 333 23358888999999999999999999999999999999999998 9988888888888877655544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=224.16 Aligned_cols=345 Identities=13% Similarity=0.076 Sum_probs=223.2
Q ss_pred HHHHhh-hcccccccCCccchhHHHHHHH-HHhhhhhchhhhhhcccchhHH-HHHHHHHHHHHHHHHhcCCcchHHHHH
Q psy8697 38 LVYLKY-LTRHYIVMFGSHFGPTTSFVII-TSPVGSTVIGPIMDYIGRKWSL-ILVCVPYIISSLLTILADPGNIELLYL 114 (508)
Q Consensus 38 ~~~~~~-i~~~~~~~s~~~~g~~~s~~~l-g~~~~~~~~g~l~Dr~Grk~~l-~~~~~~~~i~~~l~~~~~~~~~~~l~~ 114 (508)
.|.++. +.++++ .++++.|++.+...+ +..++.+.++. +||+||||.+ +.+.++.+++..+.+++++ ++.+++
T Consensus 35 ~p~~~~~l~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~ 110 (393)
T PRK15011 35 TPTLSIFLTDEVH-ARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRN--YFVLLF 110 (393)
T ss_pred HHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhH--HHHHHH
Confidence 344544 556666 899999999876655 55566655555 9999999875 5566777788888889998 988876
Q ss_pred HHHHhhcchhhHHH-HHHHhhhccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhh
Q psy8697 115 SKICAGIGGGMSTV-AMVYVSEICHENFR--PAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 115 ~r~l~G~~~g~~~~-~~~~i~e~~~~~~r--g~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 187 (508)
.+.+.|...+...+ ...++.|+.++++| +...++.+.+.++|.++||.+++.+ |||..|++.++..++..++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 190 (393)
T PRK15011 111 VGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMV 190 (393)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 66665555567778 88888888776655 3455788889999999999999877 99999999998888766666
Q ss_pred hhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHH
Q psy8697 188 ICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLIL 267 (508)
Q Consensus 188 ~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (508)
++++||+++. + + ++.. +.+. ..++++.. +.
T Consensus 191 ~~~~~~~~~~---~-------~--~~~~----------------------------~~~~-------~~~~~~~~---~~ 220 (393)
T PRK15011 191 WLFLPSMRKE---L-------P--LATG----------------------------TLEA-------PRRNRRDT---LL 220 (393)
T ss_pred HhhcCccCCC---C-------c--cccc----------------------------cccc-------cccccccH---HH
Confidence 7778887531 0 0 0000 0000 00011101 11
Q ss_pred HHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHH
Q psy8697 268 LVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345 (508)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l 345 (508)
........ .........+.|.++++ .|++... ........+..+++.++.|+++||++||+.+..+.....+....+
T Consensus 221 ~~~~~~~~-~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~ 299 (393)
T PRK15011 221 LFVICTLM-WGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM 299 (393)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 11111111 11133345678887765 5665444 344444556677889999999999999987766555444433222
Q ss_pred hhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchh
Q psy8697 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIV 425 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (508)
. . . ...+..+....+.....+... +
T Consensus 300 ~-----------------~-~------------------------------------~~~~~~l~~~~l~~~~~g~~~-~ 324 (393)
T PRK15011 300 L-----------------M-A------------------------------------HSPAILLGLQLLNAIYIGILG-G 324 (393)
T ss_pred H-----------------H-H------------------------------------hhHHHHHHHHHHHHHHHHHHH-H
Confidence 2 1 0 022222222222222222222 2
Q ss_pred hhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEecc
Q psy8697 426 IPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPE 494 (508)
Q Consensus 426 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
....+..|..|+ .|+++.++.+...++|..++|.+.|.+.+. ++...+.+.+++.+++.+..+ +.||
T Consensus 325 ~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 325 IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL-RIKD 392 (393)
T ss_pred HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 234667888886 489999999999999999999999999998 888888877777777655444 3443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=224.07 Aligned_cols=321 Identities=15% Similarity=0.091 Sum_probs=227.8
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
.+.|.+|.+.++++ .++++.|++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.+ .+++ ++.+++.
T Consensus 18 ~~~~~lp~l~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~--~~~l~~~ 93 (355)
T TIGR00896 18 SVGPLLPQIRSALG-MSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG--TALLFAG 93 (355)
T ss_pred cCcccHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc--HHHHHHH
Confidence 35778999999998 999999999999999999999999999999999999999999988888877 7788 9999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHhhh
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL------DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l------~wr~~f~~~~~~~~~~~~~~~ 188 (508)
|++.|++.+...+ ...++.|+++ ++|++++++.+.+.++|..+++.++..+ +||+.|...+++.++ .. .
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~-~~--~ 169 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL-AL--L 169 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HH--H
Confidence 9999999999888 8888999886 6899999999999999999998887766 399998877665544 22 2
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILL 268 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (508)
.++||.++. + ++ + ++.......+ .++++..+...+.
T Consensus 170 ~~~~~~~~~---~-------~~-~-------------------------------~~~~~~~~~~-~~~~~~~~~~~~~- 205 (355)
T TIGR00896 170 AWIPQVRRR---V-------AA-N-------------------------------QTTTRLTPVR-IWRSPLAWQVTVF- 205 (355)
T ss_pred HHhhhhccc---c-------CC-C-------------------------------CCCCCCCCch-hhcCHhHHHHHHH-
Confidence 234443210 0 00 0 0000011122 5555543322111
Q ss_pred HHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccC-CeeehhhhhhHHHHHHHHHh
Q psy8697 269 VILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFG-RKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~g-rr~~l~~~~~~~~~~~~~l~ 346 (508)
.......++....|.|.++++.|.+... ........++.++++++.+++.||++ ||+.+..+..+..++.+.+.
T Consensus 206 ----~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T TIGR00896 206 ----FGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL 281 (355)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 1112222445667899999887776544 46777788899999999999999995 55566666666666665555
Q ss_pred hccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhh
Q psy8697 347 SNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVI 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (508)
.. . ...... ...+++.+.+ ...+.
T Consensus 282 -----------------~~-~------------------------------------~~~~~~-~~~l~g~~~g-~~~~~ 305 (355)
T TIGR00896 282 -----------------FA-P------------------------------------MHGLWA-WALVLGLGQG-GAFPL 305 (355)
T ss_pred -----------------Hh-h------------------------------------hhHHHH-HHHHHHHhhh-hHhHH
Confidence 21 0 111111 2223333332 22344
Q ss_pred hHhhhhcc-CcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 427 PWTMISEL-LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 427 ~~~~~~e~-~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
..+...+. .+++.++...++.+..++++..++|.+.|.+.|+
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455443 4456778999999999999999999999999988
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=223.40 Aligned_cols=334 Identities=13% Similarity=0.064 Sum_probs=237.2
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh---cCCcchHHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL---ADPGNIELLY 113 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~---~~~~~~~~l~ 113 (508)
..|.+|.++++++ .++.+.|++.+.+.+++.+++++.|++.||+|||++++.+..+++++.+++.. .++ ++.++
T Consensus 22 ~~~l~~~~~~~~~-~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~--~~~~l 98 (410)
T TIGR00885 22 TNPMVPQFQQAFT-LTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMN--YTLFL 98 (410)
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHH
Confidence 3567899999998 99999999999999999999999999999999999999999999999988654 356 99999
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-------------------------
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL------------------------- 167 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l------------------------- 167 (508)
+.|++.|+|.|...+ ...++.+..|+++|++.+++.+...++|..+++.++..+
T Consensus 99 ~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (410)
T TIGR00885 99 VGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIK 178 (410)
T ss_pred HHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999887654
Q ss_pred -----hhHHHHHHHHHHHHHHHHhhhh-cCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhh
Q psy8697 168 -----DWRSLSYCFLALVLISGLVLIC-FAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTR 241 (508)
Q Consensus 168 -----~wr~~f~~~~~~~~~~~~~~~~-~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (508)
+||++|++.+++.++..++..+ ..||.++ + ++ ++
T Consensus 179 ~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~----~-------~~-~~---------------------------- 218 (410)
T TIGR00885 179 HSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH----S-------DA-KQ---------------------------- 218 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-------cc-cc----------------------------
Confidence 3999999998877763333322 2333210 0 00 00
Q ss_pred hhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh---hHHHHHHHHHHHHHHHHH
Q psy8697 242 YDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE---SHALVFLGIIRFGMSVVT 318 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~ 318 (508)
........+ .+++|..+.. .+..+++... ......|.+.+.++.+.+.+. ............+|++++
T Consensus 219 ---~~~~~~~~~-~~~~~~~~~~-~l~~f~yvg~----e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~ 289 (410)
T TIGR00885 219 ---ISFSASLSR-LARIRHYREG-VIAQFFYVGV----QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIG 289 (410)
T ss_pred ---ccchhhHHH-HHhChhHHHH-HHHHHHHHHH----HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111 5555554432 2222222222 234457778887764332222 223334446678999999
Q ss_pred HHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCcccc
Q psy8697 319 TVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVD 398 (508)
Q Consensus 319 ~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
+++.||+++|+.+.+...+..+..++.. ..
T Consensus 290 ~~l~~r~~~~~~l~i~~~~~~~~~ll~~-----------------~~--------------------------------- 319 (410)
T TIGR00885 290 TWLISYLAAHKVLMAYAIIGMALCLGSI-----------------FA--------------------------------- 319 (410)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHH-----------------Hc---------------------------------
Confidence 9999999999988887777777766666 31
Q ss_pred CCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-------ccc
Q psy8697 399 HSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-------SVI 471 (508)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-------g~~ 471 (508)
........+.+.+.+.+. ..|..++...+..+++.+..+.++.... +|+.+.|.+.|.+.|. +..
T Consensus 320 -----~~~~~~~~l~~~glf~s~-~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~ 391 (410)
T TIGR00885 320 -----GGHVGLYCLTLCSAFMSL-MFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVN 391 (410)
T ss_pred -----CChHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccc
Confidence 222333444444444444 4477789999999887765555555544 9999999999999994 355
Q ss_pred hhHHHHHHH
Q psy8697 472 GTFNVFGLV 480 (508)
Q Consensus 472 ~~~~~~~~~ 480 (508)
..|++...+
T Consensus 392 ~~~~~~~~~ 400 (410)
T TIGR00885 392 TSFILPLLC 400 (410)
T ss_pred hHHHHHHHH
Confidence 566554333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=219.08 Aligned_cols=341 Identities=11% Similarity=0.039 Sum_probs=242.4
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHH----HHHHHHHHHHHHHHHhcCCcchHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSL----ILVCVPYIISSLLTILADPGNIEL 111 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l----~~~~~~~~i~~~l~~~~~~~~~~~ 111 (508)
++.|++|.+.++++ .|..++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ .+...+++ ++.
T Consensus 22 ~~~p~l~~~l~~~g-~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~--~~~ 96 (382)
T TIGR00902 22 IFLPFFPAWLKGIG-LGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHN--AWL 96 (382)
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhh--HHH
Confidence 34777888888887 9999999999999999999999999999999985433 222222222 34456788 999
Q ss_pred HHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHh
Q psy8697 112 LYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 112 l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~ 186 (508)
+++.|+++|.+.+...| ..++..|+ +++|++..+......++|.+++|++++.+ |||..|++..+..++ .++
T Consensus 97 l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~-~~~ 173 (382)
T TIGR00902 97 LFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAF-MLI 173 (382)
T ss_pred HHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH-HHH
Confidence 99999999999888888 88887765 57889999999999999999999998887 999999887665333 333
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
.. .++|+++. + ++.++ . +.+..++..+ .+|+|+.+...+
T Consensus 174 ~~-~~~~~~~~---~-------~~~~~-~----------------------------~~~~~~~~~~-~l~~~~~~~~l~ 212 (382)
T TIGR00902 174 GF-LIKPTIPP---K-------DAIPE-D----------------------------ESQGDSAFIA-LLKNPMNLRFLA 212 (382)
T ss_pred HH-HcCCCCCC---C-------ccccc-c----------------------------ccccchhHHH-HHcChHHHHHHH
Confidence 33 33443210 0 00000 0 0011112233 777776544322
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l 345 (508)
...+. + ........+.|.++++.|.+.+. ........+..+++..+.+++.||+|+|+.+..+.+...+....+
T Consensus 213 ~~~l~----~-~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~ 287 (382)
T TIGR00902 213 AVCLI----Q-GAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII 287 (382)
T ss_pred HHHHH----H-HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 22221 1 22455667888888888776654 355556777888889999999999999999999999998888777
Q ss_pred hhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchh
Q psy8697 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIV 425 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (508)
. . .++.+.......+.+..++... +
T Consensus 288 ~-----------------~-------------------------------------~~~~~~~~~~q~l~g~~~~~~~-~ 312 (382)
T TIGR00902 288 G-----------------A-------------------------------------IEAFPLIFLLQILHCGTFAVCH-L 312 (382)
T ss_pred H-----------------h-------------------------------------HhhHHHHHHHHHHHHHHHHHHH-H
Confidence 7 3 1133444444555555555544 3
Q ss_pred hhHhhhhccCcccchhhHHHHHHH-HHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhe
Q psy8697 426 IPWTMISELLPSYARGVCSGLMIS-YGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGF 487 (508)
Q Consensus 426 ~~~~~~~e~~p~~~r~~~~g~~~~-~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~ 487 (508)
....++.+. |++.|+++.++++. ...+|..+++.+.|.+.|+ |. ..|...+++.+++.++
T Consensus 313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 445788887 99999999999874 5678999999999999999 75 6787888777766543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=220.48 Aligned_cols=355 Identities=9% Similarity=0.023 Sum_probs=239.9
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccc-hhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGR-KWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Gr-k~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
+|..+.+.++.+ .+..+.|++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+.++ ++.+++.|
T Consensus 23 ~~l~~~l~~~~g-~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 99 (418)
T TIGR00889 23 VTLGSYMSKTLH-FSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT--PAGMFPVL 99 (418)
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHH
Confidence 455666767666 999999999999999999999999999999965 77888899999899999999999 99999999
Q ss_pred HHhhcchhhHHH-HHHHhh--------hccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHH
Q psy8697 117 ICAGIGGGMSTV-AMVYVS--------EICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLIS 183 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~--------e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~ 183 (508)
++.|++.+...+ ..+... |......|.+..| .+|.++++.+++.+ +|+ +|++.+++.++
T Consensus 100 ~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~- 171 (418)
T TIGR00889 100 LANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSAL- 171 (418)
T ss_pred HHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHH-
Confidence 999998776666 544432 3233334555555 35677777777666 344 46666666666
Q ss_pred HHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccch
Q psy8697 184 GLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYK 263 (508)
Q Consensus 184 ~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (508)
..+..+++||+|+. + +++++.. ++....+..+ .+|+|.++.
T Consensus 172 ~~~~~~~~~e~~~~---~-------~~~~~~~----------------------------~~~~~~~~~~-~~k~~~~~~ 212 (418)
T TIGR00889 172 LGVFALTLPDIPVA---K-------STAKMSI----------------------------KVMLGLDAFI-LFKNKRMAI 212 (418)
T ss_pred HHHHHhcCCCCCCC---c-------cccccCH----------------------------HHHhhhhHHH-HhcCCCeee
Confidence 44456678887531 0 0000000 0000111223 677776655
Q ss_pred hHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcc--------h-hhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhh
Q psy8697 264 PLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEI--------D-ESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVS 334 (508)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~-~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~ 334 (508)
..+..++.... ......+.+.++++.|.+. + ......+..+..+++.++.+++.||+|+|+++..+
T Consensus 213 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~ 287 (418)
T TIGR00889 213 FFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLS 287 (418)
T ss_pred HHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 33333332221 1233456677777766432 1 13556666778888899999999999999999999
Q ss_pred hhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHH
Q psy8697 335 AAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILL 414 (508)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (508)
.++.+++...+. ..... ....+...+..++
T Consensus 288 ~~~~~v~~~l~~-----------------~~~~~---------------------------------~~~~~~l~l~~~l 317 (418)
T TIGR00889 288 LVAWALRFGFFA-----------------YGDPE---------------------------------YFGYALLFLSMIV 317 (418)
T ss_pred HHHHHHHHHHHH-----------------HcCcc---------------------------------hhhHHHHHHHHHH
Confidence 988888776666 31000 0011222222333
Q ss_pred HHHHHhhcchhhhHhhhhccCcccchhhHHHHHH-HHHHHHHHHHHHHhHHHhhh-c------cchhHHHHHHHHHHhhh
Q psy8697 415 YVFFSAVGVIVIPWTMISELLPSYARGVCSGLMI-SYGYVCMFFMVKAFPFAIHS-S------VIGTFNVFGLVSFTLVG 486 (508)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~g~~i~~~~~g~l~~~-g------~~~~~~~~~~~~~~~~~ 486 (508)
.+.+.+. ..+....++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.+. + |...|.+.+++.+++.+
T Consensus 318 ~g~~~~~-~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~ 396 (418)
T TIGR00889 318 YGCAFDF-FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAV 396 (418)
T ss_pred HHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence 3333332 34454588999999999999999997 56789999999999999987 4 56778888888888888
Q ss_pred eeEEEeccCCCC
Q psy8697 487 FVYFYLPETKGK 498 (508)
Q Consensus 487 ~~~~~~~~~~~~ 498 (508)
+.+++.||+++.
T Consensus 397 l~~~~~~~~~~~ 408 (418)
T TIGR00889 397 LFMIFFKYSHNA 408 (418)
T ss_pred HHHHHhCCcccC
Confidence 777778877654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=234.96 Aligned_cols=417 Identities=12% Similarity=0.091 Sum_probs=255.4
Q ss_pred hhhHHHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHH
Q psy8697 17 SCTYVRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYII 96 (508)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i 96 (508)
.+.++.+...+........+..+.++.++++++ ++..+.|++.+.+.++++++.++.|+++||+|||+.+.++.+++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~-lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 32 KVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFK-LSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhC-CCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence 334344433333333333445677899999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC-------------------------------------------------CcchHHHHHHHHHhhcchhhHH
Q psy8697 97 SSLLTILAD-------------------------------------------------PGNIELLYLSKICAGIGGGMST 127 (508)
Q Consensus 97 ~~~l~~~~~-------------------------------------------------~~~~~~l~~~r~l~G~~~g~~~ 127 (508)
+++++++.+ +..+..++++|+++|+|.+...
T Consensus 111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~ 190 (633)
T TIGR00805 111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF 190 (633)
T ss_pred HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence 999998763 1025678899999999999999
Q ss_pred H-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----h---------------------hHHHHHHHHHHH
Q psy8697 128 V-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----D---------------------WRSLSYCFLALV 180 (508)
Q Consensus 128 ~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~---------------------wr~~f~~~~~~~ 180 (508)
+ +.+++.|++|+++|++++++++.+..+|..+|+++++++ + ||..|++.+++.
T Consensus 191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~ 270 (633)
T TIGR00805 191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA 270 (633)
T ss_pred hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999999999999998765 1 777899888888
Q ss_pred HHHHHhhhhcCCCC-chhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCc
Q psy8697 181 LISGLVLICFAPES-PHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTR 259 (508)
Q Consensus 181 ~~~~~~~~~~l~es-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (508)
++..+ .++++|+. |+..... + .+.++.+. .+..++..+ .......++..+...+ ++++|
T Consensus 271 ~l~~v-~l~~~p~~lp~~~~~~-~-----~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~~~-Ll~n~ 330 (633)
T TIGR00805 271 LLTSI-PFFFFPKALPKEGKRV-N-----VDVHETEK----LEKSEDKSR--------KKNSDITKDFPKIIKR-LLCNP 330 (633)
T ss_pred HHHHH-HHHhCccccCCccccc-c-----hhhhhhhc----ccccccccc--------hhhhhhHHHHHHHHHH-HHcCc
Confidence 87444 44555554 3210000 0 00000000 000000000 0000001111233344 88888
Q ss_pred ccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhh-HHHHHHHH-HHHHHHHHHHHhhcccCC--eeehhhh
Q psy8697 260 ECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDES-HALVFLGI-IRFGMSVVTTVLARGFGR--KQLLIVS 334 (508)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~-~~~~~~~~~~~l~dr~gr--r~~l~~~ 334 (508)
.++...+... ......+.+..|.|.++++ .|++.... .......+ +.+++.+++|+++||+++ |+.+..+
T Consensus 331 ~f~~~~l~~~-----~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~ 405 (633)
T TIGR00805 331 IYMLVILAQV-----IDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFA 405 (633)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHH
Confidence 5444332222 2233366788899999987 66655443 33333343 457899999999999984 4566666
Q ss_pred hhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccc-cCC----------------------------
Q psy8697 335 AAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHN-EMQ---------------------------- 385 (508)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------------------- 385 (508)
.++..++.+.... ..+.+|+...-.-...+.+. ....+... +++
T Consensus 406 ~~~~~~~~~~~~~-----~~~~~C~~~~~agv~~~y~~--~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AG 478 (633)
T TIGR00805 406 ICLSTLSYLLCSP-----LFLIGCESAPVAGVNNPSTD--QSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAG 478 (633)
T ss_pred HHHHHHHHHHHHH-----HHeecCCCCccceeeccCCC--cccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccC
Confidence 6666665444221 11233544333222211000 00000000 000
Q ss_pred ---CCCCCC---C---------------CCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHH
Q psy8697 386 ---VPPSAF---N---------------TSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCS 444 (508)
Q Consensus 386 ---~~~~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 444 (508)
....++ + ...|. .++.......++..++..........|.. ..+-..+|+++|..+.
T Consensus 479 C~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~-~~C~~~~~~f~~~~~~~~~~~~~~~~p~~-~i~lR~V~~~~rs~al 556 (633)
T TIGR00805 479 CSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCN-PPCATSLLYFLILFIPLSFIAFITAVPLY-MVLLRVVNPEEKSLAI 556 (633)
T ss_pred CCCccCCCCcceecccccccCCCCCCCcCCCCC-cccchhHHHHHHHHHHHHHHHHhccCchh-eEEeeccCcccchHHh
Confidence 000000 0 01122 22222122222333333333334444544 6777889999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhHHHhhh
Q psy8697 445 GLMISYGYV-CMFFMVKAFPFAIHS 468 (508)
Q Consensus 445 g~~~~~~~~-g~~i~~~~~g~l~~~ 468 (508)
|+...+.++ |.+-+|.++|.+.|.
T Consensus 557 g~~~~~~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 557 GLQWLCMRVFATIPAPILFGLLIDV 581 (633)
T ss_pred hHHHHHHHHhcCCChhHHHhhhhhc
Confidence 999988665 667799999999986
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=248.26 Aligned_cols=346 Identities=17% Similarity=0.072 Sum_probs=232.2
Q ss_pred HHHHhhhcccccccC--CccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHH---hcCCcchHHH
Q psy8697 38 LVYLKYLTRHYIVMF--GSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTI---LADPGNIELL 112 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s--~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~---~~~~~~~~~l 112 (508)
....+.+..+++ .+ ....+++.+++.+++.++++++|+++||+|||++++.+.++.+++.++.. .+++ ++.+
T Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~--~~~l 106 (1146)
T PRK08633 30 ILIQNTLIKAYD-GSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGW--FWLA 106 (1146)
T ss_pred HHHHHHHHHHcC-cccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc--HHHH
Confidence 333444544444 33 34478999999999999999999999999999999998877666655544 4577 9999
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-h------------hHHHHHHHHH
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-D------------WRSLSYCFLA 178 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-~------------wr~~f~~~~~ 178 (508)
+++|+++|++.+...+ ..+++.|++|+++|++++++.+.+.++|.++|+.+++++ . |++.+.+..+
T Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1146)
T PRK08633 107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLL 186 (1146)
T ss_pred HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999877 2 2344444343
Q ss_pred HHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcC
Q psy8697 179 LVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTT 258 (508)
Q Consensus 179 ~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (508)
...+..++..+.+||+|+....+ ++.++ . ...+.....++.++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~---------------------------~~~~~~~~~~~~l~~~ 231 (1146)
T PRK08633 187 AVAVLGLIFAYRLPKVPAAAPEV-------FDKKK-Y---------------------------LFPKLLWRNLKLLRSD 231 (1146)
T ss_pred HHHHHHHHHHhcCcCCCCCCccc-------ccccc-c---------------------------ccHHHHHHHHHHHhcC
Confidence 33333445556678876432111 00000 0 0000011112225555
Q ss_pred cccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcch-h-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhh
Q psy8697 259 RECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEID-E-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSA 335 (508)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~ 335 (508)
+..+...+...+... .......+.|.++.+ .|.+.. . .......+++.++++++.+++.||+++++.+.++.
T Consensus 232 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~ 306 (1146)
T PRK08633 232 RVLWLAIIGLSYFWF-----ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA 306 (1146)
T ss_pred cHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence 544432222222221 123345567777765 677655 3 46667777888899999999999999998888887
Q ss_pred hHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHH
Q psy8697 336 AGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLY 415 (508)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (508)
++++++.+.+. .. ...+..++..+++
T Consensus 307 ~~~~~~~~~~~-----------------~~-------------------------------------~~~~~~~~~~~~~ 332 (1146)
T PRK08633 307 LGLALSLFLLP-----------------TA-------------------------------------PSLASVLVLFFLF 332 (1146)
T ss_pred HHHHHHHHHHH-----------------Hh-------------------------------------hhHHHHHHHHHHH
Confidence 77777766666 31 1223333334444
Q ss_pred HHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHH
Q psy8697 416 VFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVS 481 (508)
Q Consensus 416 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~ 481 (508)
+.+.+.. .+...+++.+..|++.||+++|+.+.+.+++.++++.+.+.+... ++...+.+.+.+.
T Consensus 333 g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 333 GFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT 399 (1146)
T ss_pred HHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4433333 344458889999999999999999999999998888777666543 3333444444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=220.12 Aligned_cols=358 Identities=13% Similarity=0.047 Sum_probs=223.6
Q ss_pred HHHHhhh-cccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHH---hcCCc---chH
Q psy8697 38 LVYLKYL-TRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTI---LADPG---NIE 110 (508)
Q Consensus 38 ~~~~~~i-~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~---~~~~~---~~~ 110 (508)
.|+++.. .++++ .++.+.|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++.. ...
T Consensus 30 ~~~~~~~l~~~~g-~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (420)
T PRK09528 30 FSFFPIWLHDING-LSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILL 108 (420)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544 44466 9999999999999999999999999999999999999887666655433221 11110 011
Q ss_pred HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHh
Q psy8697 111 LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 111 ~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~ 186 (508)
..++++++.|.+.....+ ...+..+. .+++++..+......++|..+++.+++.+ +|+.+|++.+++.++..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~ 186 (420)
T PRK09528 109 GAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVL 186 (420)
T ss_pred HHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHH
Confidence 223344444444333333 33333222 34567788888888899999999998887 8999999988888774444
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
.++..+|.++. .+.++++ + +++++...+...+ .+++|..+...+
T Consensus 187 ~~~~~~~~~~~-----------~~~~~~~---------------------~---~~~~~~~~~~~~~-~l~~~~~~~l~l 230 (420)
T PRK09528 187 LFFAKPDAPST-----------AKVANAL---------------------G---ANASAVSLKDALA-LLKLPKFWFLVL 230 (420)
T ss_pred Hhcccccccch-----------hhhccch---------------------h---cccccccHHHHHH-HccCCCeEeehH
Confidence 44444443220 0000000 0 0001111223334 777777665333
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHHh----CCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKEV----GTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVS 341 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 341 (508)
........ ......+.|.++.+. +.+... ........+...++.++.+++.||+|+|+.+..+..+.++.
T Consensus 231 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~ 305 (420)
T PRK09528 231 YVIGVACF-----YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVR 305 (420)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 22222211 122223345554432 222222 34555566777899999999999999999988888888877
Q ss_pred HHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhh
Q psy8697 342 SILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAV 421 (508)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
.+++. +. .+.+.......+.+.....
T Consensus 306 ~~l~~-----------------~~-------------------------------------~~~~~~~~~~~l~g~~~~~ 331 (420)
T PRK09528 306 IIGSG-----------------FA-------------------------------------TGPLEVSILKLLHAFEVPF 331 (420)
T ss_pred HHHHH-----------------hc-------------------------------------ccHHHHHHHHHHHHHHHHH
Confidence 77666 31 1333333333333322222
Q ss_pred cchhhhHhhhhccCcccchhhHHHH-HHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEecc
Q psy8697 422 GVIVIPWTMISELLPSYARGVCSGL-MISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPE 494 (508)
Q Consensus 422 ~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
..+....++.|.+|++.+++..+. .+....+|.++++.+.|++.|. |+..+|...+++.++..++.+...++
T Consensus 332 -~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 332 -LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred -HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 223334788888999999888766 6777889999999999999998 99999998888887766555544444
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=226.00 Aligned_cols=264 Identities=14% Similarity=0.134 Sum_probs=205.8
Q ss_pred hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcch
Q psy8697 44 LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGG 123 (508)
Q Consensus 44 i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~ 123 (508)
+.+|.+ ....+.+.+.+++.++++++.+++|.+.||++-.+.+....+++++-.++.....| ++.+++.|++.|+..
T Consensus 72 ~~edl~-~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s--~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 72 LKEDLK-LVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS--FPGLIALRFLLGLFE 148 (495)
T ss_pred Cccccc-hhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh
Confidence 445545 88999999999999999999999999999999999999999999999988888999 999999999999999
Q ss_pred hhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHhhhhcCC
Q psy8697 124 GMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----------DWRSLSYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 124 g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----------~wr~~f~~~~~~~~~~~~~~~~~l~ 192 (508)
+..+| ...+++.|+.+++|++.++++.+..++|.++|.+++..+ ||||.|++.+++.++..++..+++|
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 99999 999999999999999999999999999999999999883 9999999999999998999999999
Q ss_pred CCch--hhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhh-hhhhhhHHHHHHHhcCcccchhHHHHH
Q psy8697 193 ESPH--WLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRY-DETRNKKALWRQILTTRECYKPLILLV 269 (508)
Q Consensus 193 esp~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (508)
+.|. +...+ ++++-..+ +.+++.... +++.+++++++ .+++|..|. .
T Consensus 229 ~~P~~~~fl~~-------~ek~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-a~~dp~vw~-----~ 278 (495)
T KOG2533|consen 229 DNPSKAWFLTD-------EEKELVVE-----------------RLRESPSGGIENKFKWKGFKE-ALKDPGVWP-----F 278 (495)
T ss_pred CChhhccccch-------HHHHHHHH-----------------HHHhccCCCcccccCHHHHHH-HHhchhHHH-----H
Confidence 9986 22221 11100010 111111111 11134455566 888886554 3
Q ss_pred HHHHHHhhcccchhhhcHHHHHHH-hCCcch-hhHHHHHHHHHHHHHHHHHHHhhcc----cCCeeehhhhhhHHHH
Q psy8697 270 ILFTLQQFTGVYPVIFYAMQLFKE-VGTEID-ESHALVFLGIIRFGMSVVTTVLARG----FGRKQLLIVSAAGLGV 340 (508)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~~l~~~~~~~~~ 340 (508)
.+..++.....+.+.+|+|.++++ .|++.. .....+...++++++.+++|+++|| ..+|........+..+
T Consensus 279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~ 355 (495)
T KOG2533|consen 279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI 355 (495)
T ss_pred HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333333444477899999999999 446443 3578888999999999999999999 4555555544444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=213.57 Aligned_cols=352 Identities=13% Similarity=0.084 Sum_probs=229.3
Q ss_pred hHHHHhhh-cccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHH---HhcCC---cch
Q psy8697 37 YLVYLKYL-TRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLT---ILADP---GNI 109 (508)
Q Consensus 37 ~~~~~~~i-~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~---~~~~~---~~~ 109 (508)
+.|.+|.. .++++ .++.+.|++.+.+.++..+++++.|+++||+|||+.++.+....+++.... .+.+. ..+
T Consensus 21 ~~~~~~~~~~~~~g-~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (396)
T TIGR00882 21 YFPFFPIWLHDVNG-LSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNIL 99 (396)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35556554 44456 899999999999999999999999999999999999988776665544322 22221 013
Q ss_pred HHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Q psy8697 110 ELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGL 185 (508)
Q Consensus 110 ~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~ 185 (508)
..+++.|++.|++.+...+ ...+..|..+ +++...+......++|.++++.+++.+ +||.+|++.+++.++..+
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~ 177 (396)
T TIGR00882 100 VGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILML 177 (396)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHH
Confidence 4456778899998888888 8888777543 345566777777888999999988877 999999999888887554
Q ss_pred hhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhH
Q psy8697 186 VLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPL 265 (508)
Q Consensus 186 ~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (508)
+.+...||+|+. ++.+++. + .++++++.++..+ .+++|..+...
T Consensus 178 ~~~~~~~~~~~~-----------~~~~~~~---------------------~---~~~~~~~~~~~~~-~l~~~~~~~~~ 221 (396)
T TIGR00882 178 LLMFAKPKAPSS-----------ATVANAL---------------------G---ANASAFSLKLALE-LFRQRKFWMFV 221 (396)
T ss_pred HHHHhCCCCchh-----------hhhhccc---------------------c---cccCCCCHHHHHH-HHcCCcHHHHH
Confidence 444445554321 0000000 0 0001112233444 77887654322
Q ss_pred HHHHHHHHHHhhcccchhhhcHHHHHHHh----CCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHH
Q psy8697 266 ILLVILFTLQQFTGVYPVIFYAMQLFKEV----GTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGV 340 (508)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~ 340 (508)
+...... ..+.....+.+.++++. +.+.+. ........+...++.+..+++.||+|||+.+.++..+.++
T Consensus 222 l~~~~~~-----~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l 296 (396)
T TIGR00882 222 LYVVGVA-----CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSV 296 (396)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 2211111 11223334556666553 222222 3445556677788889999999999999999888888877
Q ss_pred HHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHh
Q psy8697 341 SSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSA 420 (508)
Q Consensus 341 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (508)
...... . . .+.+.......+.+.+..
T Consensus 297 ~~~~~~-----------------~-~------------------------------------~~~~~~~~~~~l~g~~~~ 322 (396)
T TIGR00882 297 RIIGSS-----------------F-A------------------------------------TTALEVVILKMLHAFEVP 322 (396)
T ss_pred HHHHHH-----------------h-c------------------------------------CChHHHHHHHHHHHHHHH
Confidence 776655 2 0 133333333333333222
Q ss_pred hcchhhhHhhhhccCcccchhhHHHH-HHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhe
Q psy8697 421 VGVIVIPWTMISELLPSYARGVCSGL-MISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGF 487 (508)
Q Consensus 421 ~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~ 487 (508)
.. ......+..+..|++.++++.+. .+....+|+.+++.+.|++.|. |+..+|.+.+++.++..++
T Consensus 323 ~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 323 FL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 21 12233566777888888887776 6778999999999999999998 9999999988887776554
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-24 Score=212.96 Aligned_cols=339 Identities=13% Similarity=0.035 Sum_probs=230.1
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccch----hHHHHHHHHHHHHHHHHHhcCCcchHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRK----WSLILVCVPYIISSLLTILADPGNIELL 112 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk----~~l~~~~~~~~i~~~l~~~~~~~~~~~l 112 (508)
+.|.+|.+.++.+ .|..+.|++.+++.++..++++++|++.||+||| +.+.++..+. .......+++ ++.+
T Consensus 23 ~~p~l~~~l~~~g-~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~l 97 (382)
T PRK11128 23 FLPFWSVWLKGQG-YTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHS--FWLL 97 (382)
T ss_pred HhhhHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhccc--HHHH
Confidence 4667888888887 8999999999999999999999999999999984 3333222222 2233444577 9999
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhh
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 187 (508)
++.|++.|++.+...+ ..+++.++ +++|+++.+......++|..+||.+++.+ |||..|++.++..++ .++.
T Consensus 98 ~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~-~~~~ 174 (382)
T PRK11128 98 FVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVAS-MLLG 174 (382)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH-HHHH
Confidence 9999999999888888 88887776 45678888888888899999999999887 999999887765554 3334
Q ss_pred hhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHH
Q psy8697 188 ICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLIL 267 (508)
Q Consensus 188 ~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (508)
.++.||.++ + +++++. .++..++..+ ++++|..+...+.
T Consensus 175 ~~~~~~~~~----~-------~~~~~~-----------------------------~~~~~~~~~~-i~~~~~~~~~~~~ 213 (382)
T PRK11128 175 QLLRPTIMP----Q-------GESRQQ-----------------------------ESAGWPAWKA-LLKEPTVWRFLLC 213 (382)
T ss_pred HHccCCCCC----c-------cccccc-----------------------------cccccchHHH-HHcChhHHHHHHH
Confidence 444555321 0 000000 0001122333 7777765543222
Q ss_pred HHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHh
Q psy8697 268 LVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~ 346 (508)
..+.... ......+.|.+.++.|.+.+. ........+..++..++.+++.||+++|+.+..+....+++.+.+.
T Consensus 214 ~~l~~~~-----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~ 288 (382)
T PRK11128 214 VSLLQGS-----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG 288 (382)
T ss_pred HHHHHHH-----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 334556667787777776544 4555566677888889999999999999998888888887776665
Q ss_pred hccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhh
Q psy8697 347 SNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVI 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (508)
. .++.+...+..++.+...+.. .+.
T Consensus 289 -----------------~-------------------------------------~~~~~~~~~~~~l~g~~~~~~-~~~ 313 (382)
T PRK11128 289 -----------------S-------------------------------------TTALPWLIVIQILHCGTFTVC-HLA 313 (382)
T ss_pred -----------------h-------------------------------------hhhHHHHHHHHHHHHHHHHHH-HHH
Confidence 2 013344444444444444443 344
Q ss_pred hHhhhhccCcccchhhHHHHHHHH-HHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhh
Q psy8697 427 PWTMISELLPSYARGVCSGLMISY-GYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVG 486 (508)
Q Consensus 427 ~~~~~~e~~p~~~r~~~~g~~~~~-~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 486 (508)
...+..+. +++++++..++.+.. ..+|..++|.+.|.+.|. |. ..++..+++.+++.+
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 44677776 555678888888744 566778999999999999 65 466666666655433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=210.78 Aligned_cols=349 Identities=15% Similarity=0.116 Sum_probs=228.7
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc-----cchh-HHHHHHHHHHHHHHHHHhcCCc-chH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI-----GRKW-SLILVCVPYIISSLLTILADPG-NIE 110 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~-----Grk~-~l~~~~~~~~i~~~l~~~~~~~-~~~ 110 (508)
...+|.+.++.+ .|.+++|++..+... .+..+++|+++||+ |||| .++.+..+.+++..+.++.++. +++
T Consensus 19 ~~~~~~~l~~~g-~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~ 95 (402)
T PRK11902 19 SGTLQAWMTVEG-LDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALW 95 (402)
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 445777777777 999999999777765 58899999999999 8876 7888888888888888887321 377
Q ss_pred HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHH
Q psy8697 111 LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISG 184 (508)
Q Consensus 111 ~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~ 184 (508)
.+++..++.++..+...+ ..+++.|+.|+++|+++.++...+..+|.++++.++..+ |||..|++.+++.++ .
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~-~ 174 (402)
T PRK11902 96 PLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLA-G 174 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHH-H
Confidence 888888888988888889 999999999999999999999999999999998877665 899999998888776 4
Q ss_pred HhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchh
Q psy8697 185 LVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKP 264 (508)
Q Consensus 185 ~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (508)
.+..+++||+++.. + +.++.. ++..+...+ .+++|..+..
T Consensus 175 ~l~~~~~~e~~~~~--~--------~~~~~~-----------------------------~~~~~~~~~-l~~~~~~~~~ 214 (402)
T PRK11902 175 ALTTLWAPEPEVPA--R--------PPRSLG-----------------------------EAVVGPLRD-FFSRRGAWAL 214 (402)
T ss_pred HHHHHhcCCCcccc--c--------ccchhH-----------------------------HHHHHHHHH-HHhCcCHHHH
Confidence 44456677764310 0 000000 001112222 6777765543
Q ss_pred HHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchhh-HHHHHHH-HHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHH
Q psy8697 265 LILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDES-HALVFLG-IIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSS 342 (508)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~-~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~ 342 (508)
.+...+....... ......+.+.++.|++.+.. ......+ ++.+++.++++++.||+|+|+.+..+..+..+..
T Consensus 215 l~~~~l~~~~~~~----~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~ 290 (402)
T PRK11902 215 LLLIVLYKLGDAF----AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSN 290 (402)
T ss_pred HHHHHHHHhHHHH----HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3222222211111 11122333444467665443 3333333 4578899999999999999988776666655554
Q ss_pred HHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHH---HHHHH
Q psy8697 343 ILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILL---YVFFS 419 (508)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 419 (508)
+.+. .....+ ...+.......+ .....
T Consensus 291 l~~~-----------------~~~~~~---------------------------------~~~~~~~~~~~~~~~~~g~~ 320 (402)
T PRK11902 291 LGYW-----------------VLAVTP---------------------------------KHLWTMALAIGIENLCGGMG 320 (402)
T ss_pred HHHH-----------------HHHhcC---------------------------------CcHHHHHHHHHHHHHHHHHH
Confidence 3332 111100 022322222221 11122
Q ss_pred hhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhee
Q psy8697 420 AVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFV 488 (508)
Q Consensus 420 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 488 (508)
.....+....++.+.+|.+ ..++.+....++..+++.+.|.+.|. |+...|.+.+.+++++.++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 321 TAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 2222344446666666644 45666666777887777789999999 99988988888887776554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=240.85 Aligned_cols=349 Identities=12% Similarity=0.076 Sum_probs=229.0
Q ss_pred ccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHH---HHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-H
Q psy8697 54 SHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLIL---VCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-A 129 (508)
Q Consensus 54 ~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~---~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~ 129 (508)
...++..+++.+++.++++++|+++||+|||+++.. +.++..+..++....++ ++.++++|+++|++.+...+ .
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s--~~~l~~~~~l~gi~~a~~~p~~ 129 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNS--VPLLFAALFLMGIHSALFGPIK 129 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhhchHH
Confidence 457888999999999999999999999999997533 33333333333344578 99999999999999999999 9
Q ss_pred HHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhccccc
Q psy8697 130 MVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTA 205 (508)
Q Consensus 130 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~ 205 (508)
.+++.|++++++|++++++.+++.++|.++||.+++++ +|++.|...++..++ .++..+++|+++......
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---- 204 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNAAPDL---- 204 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCCC----
Confidence 99999999999999999999999999999999999988 899998444444444 566666777764210000
Q ss_pred chhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhh
Q psy8697 206 NVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIF 285 (508)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (508)
+.+. . ..+.....++.+.+++.++...+......+. ...+..
T Consensus 205 ----~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 246 (1140)
T PRK06814 205 ----KIDR--N---------------------------IIRSTITLLKYAKADKRIWLAILGISWFWLV-----GAVVLS 246 (1140)
T ss_pred ----eecc--c---------------------------hHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-----HHHHHH
Confidence 0000 0 0000111223255666544422222222211 344556
Q ss_pred cHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCc
Q psy8697 286 YAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSN 363 (508)
Q Consensus 286 ~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 363 (508)
+.|.++++ .|.+... .......+++.+++.++.+++.|+.++++.+..+.++.++..+.+.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~----------------- 309 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLA----------------- 309 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHH-----------------
Confidence 78888877 5665444 4667788889999999999999988877777766666665555444
Q ss_pred cccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhH
Q psy8697 364 EYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVC 443 (508)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 443 (508)
+..... .+.. ......... ......|...+..++++.+.+.. .+...+++.+..|++.||++
T Consensus 310 ~~~~~~---------~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~G~v 371 (1140)
T PRK06814 310 FASSSV---------PAEP------AQLKSILVF--LSKRHGWRILIDLFGLAAAGGLY-IVPLFAALQAWANPAHRARV 371 (1140)
T ss_pred hccccc---------cccc------ccccchhhh--hcccccHHHHHHHHHHHHHHHHh-HHHHHHHHHhhCCcccceee
Confidence 210000 0000 000000000 00013344444444444444443 33456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHH
Q psy8697 444 SGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSF 482 (508)
Q Consensus 444 ~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~ 482 (508)
+|+.+....++..+++.+.+.+.+. ++...+.+.+++.+
T Consensus 372 ~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~ 412 (1140)
T PRK06814 372 IAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANL 412 (1140)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999999854 55555544444333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=215.60 Aligned_cols=331 Identities=14% Similarity=0.114 Sum_probs=223.2
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhc----ccchh-HHHHHHHHHHHHHHHHHhcCCc----chH
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY----IGRKW-SLILVCVPYIISSLLTILADPG----NIE 110 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr----~Grk~-~l~~~~~~~~i~~~l~~~~~~~----~~~ 110 (508)
..+++.++.+ +++.+.|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++...++. ...
T Consensus 22 l~~~~~~~~g-~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (437)
T TIGR00792 22 LLFFYTDVLG-LSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV 100 (437)
T ss_pred HHHHHHHccC-CCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence 3566666777 999999999999999999999999999997 68755 5777888888888888777652 145
Q ss_pred HHHHHHHHhhcchhhHHH-HHHHhhhcc-CCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHH
Q psy8697 111 LLYLSKICAGIGGGMSTV-AMVYVSEIC-HENFRPAILCLNSVFISCGILLTTILNLYL-----------DWRSLSYCFL 177 (508)
Q Consensus 111 ~l~~~r~l~G~~~g~~~~-~~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----------~wr~~f~~~~ 177 (508)
.+++.+++.+++.+...+ ..++..|.. ++++|++..++.+.+..+|..+++.+...+ +||+.+.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~ 180 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 667788889999888877 888999988 468899999999888888876665443222 7999999999
Q ss_pred HHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhc
Q psy8697 178 ALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILT 257 (508)
Q Consensus 178 ~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
++.++..++..+..||.++. + +.++ +++.+.+..++++++
T Consensus 181 ~l~~~~~~~~~~~~~e~~~~---~--------~~~~-----------------------------~~~~~~~~~~~~l~~ 220 (437)
T TIGR00792 181 LIGVVSLIICFFGTKERYSE---I--------PKNI-----------------------------EKKLSLKQIFKALFK 220 (437)
T ss_pred HHHHHHHHHHHcCCEecCCC---C--------Cccc-----------------------------ccCCCHHHHHHHHhC
Confidence 99888666666777775421 0 0000 000111122232666
Q ss_pred CcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhh
Q psy8697 258 TRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAA 336 (508)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~ 336 (508)
+|.++...+...+.... ......+.+.+.+. .+.+...........+..+++.++.+++.||+|+|+.+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~ 295 (437)
T TIGR00792 221 NDQLLILCLAYLFYNLA-----FNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGIL 295 (437)
T ss_pred CHHHHHHHHHHHHHHHH-----HHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 66544422222221111 22222233333333 2212222344555678888999999999999999999988888
Q ss_pred HHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHH
Q psy8697 337 GLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYV 416 (508)
Q Consensus 337 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (508)
+..++.+.+. ... ...+...+...+.+
T Consensus 296 ~~~~~~~~~~-----------------~~~------------------------------------~~~~~~~~~~~~~g 322 (437)
T TIGR00792 296 LMVLGYLIFF-----------------FAG------------------------------------SNLPLILVLIILAG 322 (437)
T ss_pred HHHHHHHHHH-----------------Hcc------------------------------------hhHHHHHHHHHHHH
Confidence 7777766655 210 02222333333333
Q ss_pred HHHhhcchhhhHhhhhccCc-------ccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-cc
Q psy8697 417 FFSAVGVIVIPWTMISELLP-------SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SV 470 (508)
Q Consensus 417 ~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~ 470 (508)
.+.+. ..+..+++.+|..+ ++.+|.+.|+.+....+|..+++.+.|.+.+. |+
T Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 323 FGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333 34556678888764 55679999999999999999999999999887 55
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=207.04 Aligned_cols=327 Identities=16% Similarity=0.112 Sum_probs=216.7
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc-----cchhH-HHHHHHHHHHHHHHHHhcCCc-ch
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI-----GRKWS-LILVCVPYIISSLLTILADPG-NI 109 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~-----Grk~~-l~~~~~~~~i~~~l~~~~~~~-~~ 109 (508)
..+.+|.+.+|.+ +|.++.|++... .+...+ .+++|+++||+ ||||. ++.+.++.+++....++.++. +.
T Consensus 7 ~~~~~~~~~~~~g-~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l 83 (356)
T TIGR00901 7 VGNTLPYWLRSKN-VSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL 83 (356)
T ss_pred HHhHHHHHHHHcC-CCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence 3556888889887 999999999755 555555 89999999998 89987 567788888887777777431 26
Q ss_pred HHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----h--------hHHHHHHH
Q psy8697 110 ELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----D--------WRSLSYCF 176 (508)
Q Consensus 110 ~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~--------wr~~f~~~ 176 (508)
+.+....++.+++.+...+ ..+++.|++|+++|+++.++...+..+|.++++.++..+ + ||..|++.
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ 163 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT 163 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence 7778888888988888888 999999999999999999999999999999999999766 6 99999999
Q ss_pred HHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHh
Q psy8697 177 LALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQIL 256 (508)
Q Consensus 177 ~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
++..++..+..++..||+++. + ++.++.. ++.... +++.+
T Consensus 164 ai~~l~~~~~~~~~~~e~~~~---~-------~~~~~~~-----------------------------~~~~~~-~~~~~ 203 (356)
T TIGR00901 164 ALLILPGLLVTLFLAKEPQED---A-------SVPKPLT-----------------------------QAVLKP-IREFF 203 (356)
T ss_pred HHHHHHHHHHHHHhccCCCcc---c-------ccchhHH-----------------------------HHHHHH-HHHHH
Confidence 988777443334456775321 0 0000000 000011 12145
Q ss_pred cCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchhh-HHHHHHH-HHHHHHHHHHHHhhcccCCeeehhhh
Q psy8697 257 TTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDES-HALVFLG-IIRFGMSVVTTVLARGFGRKQLLIVS 334 (508)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~-~~~~~~~~~~~~l~dr~grr~~l~~~ 334 (508)
+++..+. ...........+ ...+....+.|.++++.|++.+.. ......+ +..+++.++++++.||+|||+.+..+
T Consensus 204 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~ 281 (356)
T TIGR00901 204 QRKNMIQ-ALLLLLLIVLYK-LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLF 281 (356)
T ss_pred HhcCchH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5543222 222222222222 224556678888888877765553 3444444 56788999999999999999988888
Q ss_pred hhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHH
Q psy8697 335 AAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILL 414 (508)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (508)
.++.+++...+. ........ .| .+ ....+......++
T Consensus 282 ~~~~~~~~~~~~-----------------~~~~~~~~----~~-~~---------------------~~~~~~~~~~~~l 318 (356)
T TIGR00901 282 GIVQALTNAGFV-----------------WLASNGHH----DG-IT---------------------FPHLLMLFLTITL 318 (356)
T ss_pred HHHHHHHHHHHH-----------------HHHhcCcc----cc-cc---------------------cchHHHHHHHHHH
Confidence 877776665544 21110000 00 00 0122323333333
Q ss_pred HHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHH
Q psy8697 415 YVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGY 452 (508)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 452 (508)
...+.+. ..+...++..|.+|++.||+.+|+.+...+
T Consensus 319 ~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 319 EAVTGGL-GTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3333333 445556999999999999999999887654
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=196.85 Aligned_cols=348 Identities=17% Similarity=0.140 Sum_probs=216.3
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHHHH
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAM 130 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 130 (508)
.+....|.+.+.+.+...+.++.+|.++||+|||++++.|+...++..++.+++.| +..++++|++.|+..|...+..
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~--F~afv~aR~l~Gi~kgnl~v~r 142 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN--FAAFVLARFLGGIFKGNLSVIR 142 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhccCchHHHH
Confidence 45667899999999999999999999999999999999999999999999999999 9777777999999999999999
Q ss_pred HHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhh------HHHHHH----HHHHHHHHHHhhhhcCCCCchhhhh
Q psy8697 131 VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDW------RSLSYC----FLALVLISGLVLICFAPESPHWLIN 200 (508)
Q Consensus 131 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l~w------r~~f~~----~~~~~~~~~~~~~~~l~esp~~~~~ 200 (508)
++++|..++|+|++.++..++.+++|.++||.+++++.- +.+|.. ..++...-.....+++||+-+ .
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~ 219 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---L 219 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---c
Confidence 999999999999999999999999999999999999811 112222 222222213344568899832 1
Q ss_pred cccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHH--HHHHHHHhhc
Q psy8697 201 MDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILL--VILFTLQQFT 278 (508)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 278 (508)
+ ++.++... +++.. ++. ++. .+.....-.. .++|++...+.... +.+..+....
T Consensus 220 r-------k~~~~~~~-~~~~~------~~~-~~~--------~~~~~~~~v~-~lrn~p~~~~i~~~~i~~l~~~ly~~ 275 (451)
T KOG2615|consen 220 R-------KRNDEHST-LQEAA------DDR-LAL--------LKFARIFKVA-ALRNPPLLDFISVLRIFGLHYFLYLE 275 (451)
T ss_pred h-------hhcccccc-hhhhh------hhh-hhh--------cchhhhhhhh-hhcCccccchHHHHHHHHHHHHHHHH
Confidence 1 11100000 00000 000 000 0000001111 44444433321111 1111111111
Q ss_pred ccchhhhcHHHHH--HHhCCcc-hhhHHHHHHHHHHHHHHHHHHHhhcccC--CeeehhhhhhHHHHHHHHHhhcccccc
Q psy8697 279 GVYPVIFYAMQLF--KEVGTEI-DESHALVFLGIIRFGMSVVTTVLARGFG--RKQLLIVSAAGLGVSSILLSSNLLMKS 353 (508)
Q Consensus 279 ~~~~~~~~~~~~~--~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~g--rr~~l~~~~~~~~~~~~~l~~~~~~~~ 353 (508)
.+....+....+ +..|++. ++.......++.+++......+..||.. .+-.+..+..++.-..+.+.
T Consensus 276 -l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls------- 347 (451)
T KOG2615|consen 276 -LFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS------- 347 (451)
T ss_pred -HHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh-------
Confidence 122222333333 2255533 3345555555555555555555555544 34445555555555555555
Q ss_pred ccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhc
Q psy8697 354 TFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISE 433 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 433 (508)
. ...+........+..+..+... +-...++..
T Consensus 348 ----------~-------------------------------------~~~~~~l~~~s~l~sf~~A~~v-t~Lt~Lv~~ 379 (451)
T KOG2615|consen 348 ----------L-------------------------------------ARTPVVLYLGSTLKSFSTASVV-TCLTSLVHK 379 (451)
T ss_pred ----------c-------------------------------------cccchhhhHHHHHHHHHHHHhh-HHHHHHHHh
Confidence 2 0122333333444444444433 444588889
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHH
Q psy8697 434 LLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFT 483 (508)
Q Consensus 434 ~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~ 483 (508)
..|.++||+..|+....+.++.++||.+.|.+..+ +.+..+..-+.+.++
T Consensus 380 ~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~ 431 (451)
T KOG2615|consen 380 YGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLI 431 (451)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHH
Confidence 99999999999999999999999999999999887 444444444443333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=207.04 Aligned_cols=392 Identities=12% Similarity=0.058 Sum_probs=233.0
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhc-ccchhHHHHHHHHHHHHHHHHHhcCCcchHH-HHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY-IGRKWSLILVCVPYIISSLLTILADPGNIEL-LYLS 115 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr-~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~-l~~~ 115 (508)
.....+++++++ .++++.+++.+.+.....+..+++|+++|| +||||+++.+.+++++++++++++.+ ... ++++
T Consensus 35 ~~l~~yl~~~lg-~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~--~~~ll~~~ 111 (489)
T PRK10207 35 GILAVFFVKQLG-FSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL--KPDLIFIA 111 (489)
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHH
Confidence 444566677776 899999999999998888889999999999 99999999999999999999999876 554 5589
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCC--CchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHEN--FRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~--~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
|+++|+|.|...+ ..+++.|.+|++ +|+++.+++..+.++|.++||.+++++ |||+.|++.++..++ .++.+
T Consensus 112 ~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~-~~~~~ 190 (489)
T PRK10207 112 LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLII-ALLVY 190 (489)
T ss_pred HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999 999999999887 457789999999999999999999888 999999997654333 44444
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHH----------HHHHHhCChhhhHHHHHH---HHHhhhhhhhhhhhHHHHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEK----------SLKFLNRNPEIFEKEWRV---LCQVRTRYDETRNKKALWRQI 255 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 255 (508)
...++..+....+ +++.+.+...... .........+........ .....--.++.+. + + .
T Consensus 191 ~~~~~~~~~~~~~--~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~-~---~-~ 263 (489)
T PRK10207 191 FACRGMVKDIGSE--PDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL-D---K-T 263 (489)
T ss_pred HHcchhhcccCCC--CCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-C---H-H
Confidence 4444322110000 0000000000000 000000000000000000 0000000000000 0 1 2
Q ss_pred hcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-h-----CCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCee
Q psy8697 256 LTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-V-----GTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQ 329 (508)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 329 (508)
+|+|.+....+ ++........+.......+.+.++ . |+.........+..+..++.+++.+++.||+++|+
T Consensus 264 ~r~r~~~~~~l---~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~ 340 (489)
T PRK10207 264 GRNKMFVAFVL---MLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKG 340 (489)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC
Confidence 23222111111 100111111122222334444442 2 22223334444455566677778889999999887
Q ss_pred e-------hhhhhhHHHHHHHHHhhccccccccccccccCcccc--ccCCcccccccccccccCCCCCCCCCCCccccCC
Q psy8697 330 L-------LIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYL--VTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHS 400 (508)
Q Consensus 330 ~-------l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (508)
. +.+|+++.+++++.+. ... ....+
T Consensus 341 ~~~~~~~k~~~G~~l~~~~~~~~~-----------------~~~~~~~~~~----------------------------- 374 (489)
T PRK10207 341 KDLSMPMKFTLGMFLCSLGFLTAA-----------------AAGMWFADAQ----------------------------- 374 (489)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHH-----------------HHHHhhcCCC-----------------------------
Confidence 4 6677777777765443 100 00000
Q ss_pred CCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhh----------h-c
Q psy8697 401 SLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH----------S-S 469 (508)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~----------~-g 469 (508)
...+.|+......+.+.+. ....+....++.+..|++.++.++|+.+....+|+.++..+...... . .
T Consensus 375 ~~~s~~~~i~~~~l~g~Ge-~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~ 453 (489)
T PRK10207 375 GLTSPWFIVLVYLFQSLGE-LFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPV 453 (489)
T ss_pred CccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhh
Confidence 0012344444444444433 33556667889999999999999999999999999999887765521 1 2
Q ss_pred cchhHHHHHHHHHHhhheeEE
Q psy8697 470 VIGTFNVFGLVSFTLVGFVYF 490 (508)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~ 490 (508)
+.+.|...++..+++.++.+.
T Consensus 454 ~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 454 YTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-22 Score=203.21 Aligned_cols=350 Identities=16% Similarity=0.123 Sum_probs=248.5
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc---CCcchHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA---DPGNIELLYL 114 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~---~~~~~~~l~~ 114 (508)
...++.+..+.. -|+...+++.++..+...+.++++|.++||++|||+++.+-++.++..+..++. ...+.+.+++
T Consensus 30 ~va~~wlv~~lt-~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~ 108 (524)
T PF05977_consen 30 TVALAWLVTQLT-GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLI 108 (524)
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 334555544544 688899999999999999999999999999999999999988877665554432 1113899999
Q ss_pred HHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhh
Q psy8697 115 SKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLIC 189 (508)
Q Consensus 115 ~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 189 (508)
.-++.|++.+...| ..+++.|..|+++...+.++.+...++..++||.+++.+ |-.++|.+.++..++ .+....
T Consensus 109 ~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~-~i~~l~ 187 (524)
T PF05977_consen 109 LTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLI-SILALL 187 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999 999999999999999999999999999999999999987 778888888776666 333333
Q ss_pred cCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHH
Q psy8697 190 FAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLV 269 (508)
Q Consensus 190 ~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (508)
..+..++ ++..+.++ -.+..+.-++...++|..+. .+...
T Consensus 188 ~~~~~~~------------~~~~~~e~---------------------------~~~~l~~G~ryv~~~~~l~~-~l~~~ 227 (524)
T PF05977_consen 188 RWKPPPP------------PSSLPRER---------------------------FFSALREGLRYVRSSPPLRS-VLLRS 227 (524)
T ss_pred Hcccccc------------ccccchhh---------------------------hhhhHHHHHHHHhcchHHHH-HHHHH
Confidence 3332211 00000000 01111222331333443332 22222
Q ss_pred HHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhh
Q psy8697 270 ILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSS 347 (508)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~ 347 (508)
.+..+. ...+...+|.+.++ .|.+... .......+++.++|+++.+++.+|+++++++..+.++.+++.+.++
T Consensus 228 ~~~~l~----~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la- 302 (524)
T PF05977_consen 228 FLFNLF----ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA- 302 (524)
T ss_pred HHHHHh----hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh-
Confidence 222211 22344557887766 5554444 4677888999999999999999999999988888888888877777
Q ss_pred ccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhh
Q psy8697 348 NLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIP 427 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (508)
+ ..+.+.....+++.+.+... .....
T Consensus 303 ----------------l-------------------------------------~~~~~~~~~~l~l~G~~~~~-~~~~~ 328 (524)
T PF05977_consen 303 ----------------L-------------------------------------SPSFWLALIALFLAGAAWII-ANSSL 328 (524)
T ss_pred ----------------c-------------------------------------chHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4 11334444444444444333 33444
Q ss_pred HhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhee
Q psy8697 428 WTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFV 488 (508)
Q Consensus 428 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 488 (508)
.+...+..|++.||+.+++.++....+..+|..+.|.+.+. |....+.+.++..+++.++.
T Consensus 329 ~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 329 NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999 88888877666555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=190.92 Aligned_cols=359 Identities=12% Similarity=0.088 Sum_probs=258.9
Q ss_pred ccccchhhHHHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHH
Q psy8697 12 CLRKKSCTYVRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVC 91 (508)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~ 91 (508)
+.....+..+.++.++.....+. .+|.+++.++ ++..+.+++...++.|+.+++++.|++.+|+|+|+.+++|+
T Consensus 12 ~~~~v~~t~lFfl~G~~~~l~di-----Lip~l~~~f~-ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL 85 (422)
T COG0738 12 KLAFVLLTSLFFLWGFITCLNDI-----LIPHLKEVFD-LTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGL 85 (422)
T ss_pred eeHHHHHHHHHHHHHHHhhcchh-----hHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHH
Confidence 33333334444445555455544 5999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---hcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 92 VPYIISSLLTI---LADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 92 ~~~~i~~~l~~---~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
.+++++..+.. ...+ |..++++-++.|.|.+...+ +..|++...++++..+.+.+.+...++|.+++|+++..+
T Consensus 86 ~l~avg~~lF~pAa~~~~--y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 86 LLYAVGAALFWPAASSKS--YGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred HHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999985 4555 99999999999999999999 999999999999999999999999999999999999876
Q ss_pred -----------------------hhHHHHHHHHHHHHHHHHhhhh-cCCCCchhhhhcccccchhhhHHHHHHHHHHHhC
Q psy8697 168 -----------------------DWRSLSYCFLALVLISGLVLIC-FAPESPHWLINMDRTANVNKRMAKAEKSLKFLNR 223 (508)
Q Consensus 168 -----------------------~wr~~f~~~~~~~~~~~~~~~~-~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (508)
.||.+|...+...+++.+.... -.||.+.- ..+
T Consensus 164 ils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~------------~~~----------- 220 (422)
T COG0738 164 ILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA------------APS----------- 220 (422)
T ss_pred HHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc------------ccc-----------
Confidence 3777887777766663333322 22332110 000
Q ss_pred ChhhhHHHHHHHHHhhhhhhhhhhhH-HHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-
Q psy8697 224 NPEIFEKEWRVLCQVRTRYDETRNKK-ALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE- 300 (508)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~- 300 (508)
+.+..+ ...+ .+++|+.+... +..+++. +.......|.+.++.+ .|.+.++
T Consensus 221 --------------------~~~~~~~~~~~-l~~~~~~~~gv-l~~FlYV----G~Eva~gsfl~~y~~~~~g~~~~~a 274 (422)
T COG0738 221 --------------------LGASGSAGLSS-LFQNKHLRLGV-LAIFLYV----GAEVAIGSFLVSYLEELLGLNEQQA 274 (422)
T ss_pred --------------------ccccccchHHH-HHhChHHHHHH-HHHHHHH----hHHHHHHHHHHHHHHhcCCccHHHH
Confidence 001111 2233 77777644422 2222222 2345567888888888 6666555
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccc
Q psy8697 301 SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTW 380 (508)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (508)
....+....+.++|++++.++..|+...|.+.....+..+.++... +
T Consensus 275 a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~-----------------l---------------- 321 (422)
T COG0738 275 AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVA-----------------L---------------- 321 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-----------------H----------------
Confidence 4677777888899999999999999988888777666555555555 2
Q ss_pred cccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHH
Q psy8697 381 HNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVK 460 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~ 460 (508)
....+.+..+.+.+.+. ..+.|..++...+..|++ ....|......-+|+++.|.
T Consensus 322 ----------------------~~g~v~~~~l~~ig~F~-simfPTIfslal~~l~~~--ts~~s~~l~maivGGAiiP~ 376 (422)
T COG0738 322 ----------------------IGGVVALYALFLIGLFN-SIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPP 376 (422)
T ss_pred ----------------------hcChHHHHHHHHHHHHh-HHHHHHHHHHHHhccCcc--ccccceeeeeheecchHHHH
Confidence 03344444444444444 445677789999999843 34445555567789999999
Q ss_pred HhHHHhhh-ccchhHHHHHHHHHHhh
Q psy8697 461 AFPFAIHS-SVIGTFNVFGLVSFTLV 485 (508)
Q Consensus 461 ~~g~l~~~-g~~~~~~~~~~~~~~~~ 485 (508)
+.|++.|. +....+......|.+..
T Consensus 377 l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 377 LQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999 77766665555555554
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=213.62 Aligned_cols=386 Identities=15% Similarity=0.186 Sum_probs=269.9
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH-
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS- 115 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~- 115 (508)
+..+.+.++++++ .+.++++|+.++......+.+++.+.+.||+|.|++.+.|.++..+|.++.+++++ +|++++.
T Consensus 65 ~Gv~~~~~~~~f~-~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~--i~~l~lt~ 141 (509)
T KOG2504|consen 65 FGLLFEELMDYFG-SSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS--LWQLYLTF 141 (509)
T ss_pred ehhhHHHHHHHhC-CCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence 4677899999999 78888999999999999999999999999999999999999999999999999999 9888776
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
-++.|+|.|..+. +.+.+..++ +|+|+.+.|+...+.++|.++-|.+..++ |||+.+++.+.+.+-+.+.....
T Consensus 142 gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~ 220 (509)
T KOG2504|consen 142 GVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALL 220 (509)
T ss_pred HHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 5789999999999 888888665 78899999999999999999999998888 99999999999998755555556
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHH---HHHhCChhh-----hHHHHHHHHHhhhhhhhhhhhHHH----HHHHhcC
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSL---KFLNRNPEI-----FEKEWRVLCQVRTRYDETRNKKAL----WRQILTT 258 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 258 (508)
.|.+++....+. ++.++.....+... ++....++. ......+.++.+++.+........ ++ ++++
T Consensus 221 rp~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-ll~~ 297 (509)
T KOG2504|consen 221 RPLSPPKKPNEE--KDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLS-LLKD 297 (509)
T ss_pred CCCCcCCCchhh--hhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHH-HHcC
Confidence 664443211100 00000000000000 000000000 000111111111111111111111 23 7777
Q ss_pred cccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCee--ehhhhh
Q psy8697 259 RECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQ--LLIVSA 335 (508)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~--~l~~~~ 335 (508)
+. .+...+.......++.....++|.+.++.|++.+. +....+.++..++++++.|++.|+...++ +..++.
T Consensus 298 ~~-----fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~l 372 (509)
T KOG2504|consen 298 PK-----FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTL 372 (509)
T ss_pred ch-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHH
Confidence 54 33344444444455777888999999988886655 58899999999999999999999988544 344455
Q ss_pred hHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHH
Q psy8697 336 AGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLY 415 (508)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (508)
+..+++.+.+. + ...+..+....++
T Consensus 373 l~~gl~~~~~p-----------------~--------------------------------------~~~~~~l~~~~~~ 397 (509)
T KOG2504|consen 373 LIAGLARLFLP-----------------F--------------------------------------ATTYVGLIVFSIL 397 (509)
T ss_pred HHHHHHHHHHH-----------------H--------------------------------------hccHHHHHHHHHH
Confidence 55555554444 2 1333333333333
Q ss_pred HHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhheeE
Q psy8697 416 VFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 416 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~ 489 (508)
.++.......+....+.|+.+.+.-..+.|+...+..++..+||.+.|.+.|. +|...|...+.+.+++..+.+
T Consensus 398 fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 398 FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence 33333444555557889999999999999999999999999999999999998 488888888877777765443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-21 Score=198.53 Aligned_cols=396 Identities=12% Similarity=0.052 Sum_probs=234.8
Q ss_pred HHHhhh-ccc--ccccCCccchhHHHHHHHHHhhhhhchhhhhhc-ccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHH
Q psy8697 39 VYLKYL-TRH--YIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY-IGRKWSLILVCVPYIISSLLTILADPGNIELLYL 114 (508)
Q Consensus 39 ~~~~~i-~~~--~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr-~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~ 114 (508)
+.+|.+ .++ ++ .+..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++ ++.+++
T Consensus 31 ~~L~~yl~~~~~lg-~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~--~~~~~~ 107 (475)
T TIGR00924 31 GILAVYLVQQAGLG-FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY--PDLIFY 107 (475)
T ss_pred HHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc--HhHHHH
Confidence 334444 444 55 899999999999999999999999999999 89999999999999999999999998 899999
Q ss_pred HHHHhhcchhhHHH-HHHHhhhccCCCC---chhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHh
Q psy8697 115 SKICAGIGGGMSTV-AMVYVSEICHENF---RPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 115 ~r~l~G~~~g~~~~-~~~~i~e~~~~~~---rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~ 186 (508)
+|++.|++.|...+ ..++++|++|+++ |+++.++++.+.++|.++||.+++++ +||+.|.+.++..++ .++
T Consensus 108 ~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~-~~l 186 (475)
T TIGR00924 108 GLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVI-GLL 186 (475)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-HHH
Confidence 99999999999999 9999999998764 88899999999999999999999987 899999998865555 444
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHH----------HH--HhCChhhhHHHHH-----HHHHhhhhhhhhhhhH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSL----------KF--LNRNPEIFEKEWR-----VLCQVRTRYDETRNKK 249 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 249 (508)
.+.+.++..+...+++++ ..+++.+...... .. ...+....+.... ..........++ ...
T Consensus 187 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 264 (475)
T TIGR00924 187 TFFAGRHMLRDIGSVPDP-LSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP-RLD 264 (475)
T ss_pred HHHHcccccccCCCCCCC-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc-cCC
Confidence 443333221100000000 0000000000000 00 0000000000000 000000000000 000
Q ss_pred HHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCC-----cchhhHHHHHHHHHHHHHHHHHHH---
Q psy8697 250 ALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGT-----EIDESHALVFLGIIRFGMSVVTTV--- 320 (508)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~-----~~~~~~~~~~~~~~~~~~~~~~~~--- 320 (508)
. .-+++ . ... +...+........+.-.....+.+.++ .+. +........+.++..++..++..+
T Consensus 265 ~----~~~~~-~-~~~-l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~ 337 (475)
T TIGR00924 265 A----VARNK-M-YAY-IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWT 337 (475)
T ss_pred H----HHHhH-H-HHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0 00011 0 111 111111111111122233334444433 222 112334455555555555544333
Q ss_pred -hhcc-cCCeeeh--hhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCcc
Q psy8697 321 -LARG-FGRKQLL--IVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSC 396 (508)
Q Consensus 321 -l~dr-~grr~~l--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
+.|| .+.+... .+|.++.++++..+. +.....+
T Consensus 338 ~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~-----------------~~~~~~~-------------------------- 374 (475)
T TIGR00924 338 RLGRKGKDPTTPLKFTLGMLFCGASFLTFA-----------------ASIWFAD-------------------------- 374 (475)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHH-----------------HHHhhcC--------------------------
Confidence 3443 2223333 677888877777766 2111000
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHH
Q psy8697 397 VDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFN 475 (508)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~ 475 (508)
+....+.|+.+....+... ......|...+++.+..|++.||+.+|+......+|..+++.+.....+. ++...|.
T Consensus 375 --~~~~~s~~~~i~~~~~~~~-ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~ 451 (475)
T TIGR00924 375 --AGGLTSPWFMVLIYLFQTL-GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFG 451 (475)
T ss_pred --CCCccCHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 0001234444444444444 44446677789999999999999999999999999999999888877666 6777777
Q ss_pred HHHHHHHHhhheeEEEec
Q psy8697 476 VFGLVSFTLVGFVYFYLP 493 (508)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~ 493 (508)
..+++.++..++.++..|
T Consensus 452 ~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 452 KIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777666555544333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-23 Score=195.42 Aligned_cols=334 Identities=12% Similarity=0.103 Sum_probs=238.0
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-H
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-A 129 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~ 129 (508)
-.++++|++.+...+...+.+++.|.+.||+|+|..+++|+.++..+++++++..+ ++.++++|.+||+|.+...+ +
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s--y~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS--YPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch--hHHHHHHHHHhhhhHHHHHhhh
Confidence 57789999999999999999999999999999999999999999999999999999 99999999999999999999 9
Q ss_pred HHHhhhccCCCC-chhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccc
Q psy8697 130 MVYVSEICHENF-RPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRT 204 (508)
Q Consensus 130 ~~~i~e~~~~~~-rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~ 204 (508)
.++++|.+|+++ |++++|+.-.+.++|.++||.+++.+ |.+.+|++.+++.++-..+.++.++.+..
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~-------- 252 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM-------- 252 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc--------
Confidence 999999998765 79999999999999999999999998 99999999999999955555555544311
Q ss_pred cchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhh
Q psy8697 205 ANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVI 284 (508)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (508)
+. ++.++....|+ ++++|..+........... .....-
T Consensus 253 -----~~-------------------------------~~~~~~~~~~~-Ll~dP~I~~~agai~~~n~-----~lafLe 290 (464)
T KOG3764|consen 253 -----DP-------------------------------DSTEQGTPMWS-LLMDPYILLIAGAITFSNS-----SLAFLE 290 (464)
T ss_pred -----Cc-------------------------------cccccCccHHH-HHhCchHhhhhcchhhccc-----hHHHhC
Confidence 00 01222334555 7777754332211111111 111122
Q ss_pred hcHHHHHHH-hCCcc-hhhHHHHHHHHHHHHHHHHHHHhhcccCCeee--hhhhhhHHHHHHHHHhhccccccccccccc
Q psy8697 285 FYAMQLFKE-VGTEI-DESHALVFLGIIRFGMSVVTTVLARGFGRKQL--LIVSAAGLGVSSILLSSNLLMKSTFTNCAI 360 (508)
Q Consensus 285 ~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~--l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 360 (508)
-.++.+..+ ...+. ..........+..++++.+.|.+.||++..+. ...+.+..+.+.....
T Consensus 291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP-------------- 356 (464)
T KOG3764|consen 291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIP-------------- 356 (464)
T ss_pred cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhH--------------
Confidence 223333333 33222 33456667778888999999999999994333 3334444443333333
Q ss_pred cCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc--
Q psy8697 361 QSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY-- 438 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-- 438 (508)
++... ...|.....+...+........|.. .+..|.-..+
T Consensus 357 ---~~~~~----------------------------------~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~ 398 (464)
T KOG3764|consen 357 ---FATSI----------------------------------AQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGF 398 (464)
T ss_pred ---hhhhH----------------------------------HHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhcccc
Confidence 21110 1223333333333333344445554 4444544333
Q ss_pred -chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhee
Q psy8697 439 -ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFV 488 (508)
Q Consensus 439 -~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 488 (508)
.-|..+++......+|.++||.+.|.+.+. |+.|...+.+...++-.-++
T Consensus 399 ~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 399 NVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred ceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999999999 99998888888877765443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=188.76 Aligned_cols=351 Identities=10% Similarity=-0.015 Sum_probs=222.6
Q ss_pred hHHHHhhhcccccccCCccchhH--HHHHHHHHhhhhhch-hhhhhcccchhHHHHHHHHH-HHHHHHHH-h--cCCcch
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPT--TSFVIITSPVGSTVI-GPIMDYIGRKWSLILVCVPY-IISSLLTI-L--ADPGNI 109 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~--~s~~~lg~~~~~~~~-g~l~Dr~Grk~~l~~~~~~~-~i~~~l~~-~--~~~~~~ 109 (508)
..|.+|.+.++.+ .+.+++|++ .+.+.+...+.++++ ++..||+||||..++...+. .+.....+ + ..+ ..
T Consensus 20 ~~p~lp~~l~~~g-~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 97 (390)
T TIGR02718 20 AMDALPTLLREDG-APLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVA-GA 97 (390)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchh-hH
Confidence 4677899988887 999999997 477788888888888 55799999999876555332 22222222 2 211 13
Q ss_pred HHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHH
Q psy8697 110 ELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISG 184 (508)
Q Consensus 110 ~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~ 184 (508)
..++..-++.++..+...+ ...+..|..++++++...+....+..+|.++|+....++ +||..|++.+++.++..
T Consensus 98 ~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~ 177 (390)
T TIGR02718 98 GWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASL 177 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 3444555566677777777 888888988888888888888888899999998766655 99999999998888744
Q ss_pred HhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchh
Q psy8697 185 LVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKP 264 (508)
Q Consensus 185 ~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (508)
+...+..||+++. + ++. ++..++..+ .+|+|..+..
T Consensus 178 ~~~~~~~~~~~~~---~-------~~~---------------------------------~~~~~~~~~-~l~~~~~~~~ 213 (390)
T TIGR02718 178 VCVLWLKDRAVAS---P-------EAP---------------------------------LARRASLFR-FFRRPLAWSL 213 (390)
T ss_pred HHHHHcCCCCcCc---c-------ccc---------------------------------hhhHHHHHH-HHcCcCHHHH
Confidence 4443333433210 0 000 000112333 7777764442
Q ss_pred HHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchhh-HHHHHHH-HHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHH
Q psy8697 265 LILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDES-HALVFLG-IIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSS 342 (508)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~-~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~ 342 (508)
.....+... .......+.+.++++.|++.+.. ......+ ...+++.++.+++.||+|+|+.+..+..+.++..
T Consensus 214 ~~~~~l~~~-----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~ 288 (390)
T TIGR02718 214 LALALLSAM-----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLA 288 (390)
T ss_pred HHHHHHHHH-----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 222222111 12334456777888888876653 4444444 3566778999999999999998887766553333
Q ss_pred HHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhc
Q psy8697 343 ILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVG 422 (508)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (508)
+... ..... |. ....+.......+.....+..
T Consensus 289 ~~~~-----------------~~~~~-----------~~--------------------~~~~~~~~~~~~~~~~~~g~~ 320 (390)
T TIGR02718 289 LLWF-----------------AQAAF-----------WL--------------------APGIAVAWSCSAFGSLITGIT 320 (390)
T ss_pred HHHH-----------------HHHHc-----------cc--------------------CCcHHHHHHHHHHHHHHHHHH
Confidence 2222 10000 00 001111111111111222222
Q ss_pred chhhhHhhhhccCcc-cchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhe
Q psy8697 423 VIVIPWTMISELLPS-YARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGF 487 (508)
Q Consensus 423 ~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~ 487 (508)
. +...+...+..++ +.+++.+++.+...++|..++|.+.|.+.|. |+...|...+++.+++.++
T Consensus 321 ~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 321 S-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred H-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 2 3334555555655 8899999999999999999999999999998 8888888887777766543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=191.86 Aligned_cols=388 Identities=13% Similarity=0.111 Sum_probs=250.7
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhh----cccchhHHHH-HHHHHHHHHHHHHhcCCcchH--
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMD----YIGRKWSLIL-VCVPYIISSLLTILADPGNIE-- 110 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~D----r~Grk~~l~~-~~~~~~i~~~l~~~~~~~~~~-- 110 (508)
.+.++.+.++.+ .++.+.+++..+..+...+.+++.|.++| |+||||.+++ +.....++.++.+++++ .+
T Consensus 24 ~~~l~~yl~~lg-~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~--~~~~ 100 (477)
T TIGR01301 24 LSLLTPYVQELG-IPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD--IGHL 100 (477)
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch--hhhh
Confidence 334444556666 89999999999999999999999999999 5999998877 46677777788888766 43
Q ss_pred ---------------HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHhh-----
Q psy8697 111 ---------------LLYLSKICAGIGGGMSTV-AMVYVSEICHENFR--PAILCLNSVFISCGILLTTILNLYL----- 167 (508)
Q Consensus 111 ---------------~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~r--g~~~~~~~~~~~lG~~~g~~l~~~l----- 167 (508)
.++++-.+..++.....+ ..++++|.+|+++| +.+.++.+.+.++|.++|+.+++..
T Consensus 101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~ 180 (477)
T TIGR01301 101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI 180 (477)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 223333344557887888 99999999998876 5799999999999999999988753
Q ss_pred --------------hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHH
Q psy8697 168 --------------DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWR 233 (508)
Q Consensus 168 --------------~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (508)
+.|..|++.++..+++.++..+..||.|... ++ +..++ + .+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-~~-------~~~~~-~-----~~----------- 235 (477)
T TIGR01301 181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG-SD-------DFINS-E-----AA----------- 235 (477)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-cc-------cchhh-h-----cc-----------
Confidence 4578899988888887888888899976311 00 00000 0 00
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH--hCCcc------hh-----
Q psy8697 234 VLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE--VGTEI------DE----- 300 (508)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~------~~----- 300 (508)
+.++.+..+..+..++.+.+-|+ .+...++..+..+.++..+..|...+..+ .+.+. ++
T Consensus 236 ----~~~~~~~~~~~~~i~~~~~~mP~----~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G 307 (477)
T TIGR01301 236 ----PPSKHGEEAFFGELFGAFKYLPR----PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAG 307 (477)
T ss_pred ----cccccchhhhHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHH
Confidence 00000011122333442222232 22223333333444567777787777764 22111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCC-eeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCccccccccc
Q psy8697 301 SHALVFLGIIRFGMSVVTTVLARGFGR-KQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHST 379 (508)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (508)
.......++...+.+++-.++.+|+|+ |+....+.++.++++.... +....+++
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~-----------------~i~~~~~~-------- 362 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATV-----------------LVTYVAKN-------- 362 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH-----------------HHHhhhhc--------
Confidence 133445555666777788889999985 6666788777777777766 32211000
Q ss_pred ccccCCCCCCCCCCCcc--ccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcc--cchhhHHHHHHHHHHHHH
Q psy8697 380 WHNEMQVPPSAFNTSSC--VDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPS--YARGVCSGLMISYGYVCM 455 (508)
Q Consensus 380 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~ 455 (508)
+ .+.++. ....+....+..++.....+...+. ...++++++++..|+ +..|..+|+.|.+..+.+
T Consensus 363 ~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQ 431 (477)
T TIGR01301 363 S----------RYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQ 431 (477)
T ss_pred c----------ccccccccccCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHH
Confidence 0 000000 0000011124444444444444443 467788999999995 455999999999999999
Q ss_pred HHHHHHhHHHhhh---ccchhHHHHHHHHHHhhheeEEEeccCCC
Q psy8697 456 FFMVKAFPFAIHS---SVIGTFNVFGLVSFTLVGFVYFYLPETKG 497 (508)
Q Consensus 456 ~i~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (508)
.+.....|.+.+. +....+.+-++..++++++.++.+|+++.
T Consensus 432 ii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 432 IIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999988886655 45667777788888888888888887764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=190.81 Aligned_cols=378 Identities=13% Similarity=0.110 Sum_probs=240.3
Q ss_pred hHHHHhhhcccccccCCcc-chhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSH-FGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~-~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
.+...|++.++++ +++++ .|.+.++++.++++++++.|.++||+|.|+++.++.+.+++.+++.+++++ +..+.+.
T Consensus 45 ~s~a~p~L~~elg-lT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S--l~~L~i~ 121 (511)
T TIGR00806 45 ESFITPYLLTVLN-FTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS--VWHMQLM 121 (511)
T ss_pred HHHHHHHHHHHcC-CCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3556788888887 99999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcchhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHH--HHHHHHHHHhhhhc
Q psy8697 116 KICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCF--LALVLISGLVLICF 190 (508)
Q Consensus 116 r~l~G~~~g~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~--~~~~~~~~~~~~~~ 190 (508)
|++.|++.|...+...++..|+|+++|+++.++...+..+|.+++++++..+ |||..+.+. .+.+...++++.++
T Consensus 122 R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 122 EVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999889999999999999999999999999999999999999888 888655443 22333336667788
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHH---HHhcCcccchhHHH
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWR---QILTTRECYKPLIL 267 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 267 (508)
+|..++.+.-+++++. +...+.+ .+.....+. .+. ....+.......+..+. ...+++. ++
T Consensus 202 LP~~~~sl~f~~~~~~---~~~~~~~-~~~~~~~~~--~~~-----~~~~~~~~~~~~~~l~~~~~~~y~n~~-----vl 265 (511)
T TIGR00806 202 LKRPKRSLFFNRLEDV---RGALPCE-LDQMVPGPG--GKL-----EDYLGTCRDSFLVRMLSELVTIYRNPQ-----LL 265 (511)
T ss_pred CCCCchhhhhcccccc---ccccccc-cccCCCCCc--ccc-----chhhhhhhhHHHHHHHHHHHHHhcCcc-----hh
Confidence 8966554433311000 0000000 000000000 000 00000000011112222 1444543 34
Q ss_pred HHHHHHHHhhcccchhhhcHHHHHHHhCCcchh--hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHH
Q psy8697 268 LVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE--SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345 (508)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l 345 (508)
...++.....++++-+..|...+.++..-+.+. ...-.+..+.+.+.++..|++-.+..+.-.+.++.+...-+.+++
T Consensus 266 ~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~ 345 (511)
T TIGR00806 266 LWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVF 345 (511)
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhh
Confidence 444555555666788888888888775332221 133334445566677888887544433223333322222222222
Q ss_pred hhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchh
Q psy8697 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIV 425 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (508)
. ... ..+.|...+...++...+.+.. +
T Consensus 346 ~------------------m~~----------------------------------t~~Iw~~Y~~yvlf~~~y~fli-t 372 (511)
T TIGR00806 346 W------------------MSQ----------------------------------SHDIWVLYVTYVLFRGIYQFLV-P 372 (511)
T ss_pred h------------------hhc----------------------------------ccchHHHHHHHHHHHHHHHHHH-H
Confidence 2 111 1256677777777777776644 5
Q ss_pred hhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHh----HHHhhh-----ccchhHHHHHHHHHHhhh
Q psy8697 426 IPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAF----PFAIHS-----SVIGTFNVFGLVSFTLVG 486 (508)
Q Consensus 426 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~----g~l~~~-----g~~~~~~~~~~~~~~~~~ 486 (508)
+...-+++....+.-|...|+++.+..+-+.+-..+. |.-.+. -|...|.+++++.++..+
T Consensus 373 ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~ 442 (511)
T TIGR00806 373 IATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFRIYSVYFLVLSIICFFGAG 442 (511)
T ss_pred HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEEehhhHHHHHHHHHHHHHH
Confidence 5556666767777779999998888777666654433 221111 233455566655555544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-20 Score=175.54 Aligned_cols=342 Identities=18% Similarity=0.156 Sum_probs=258.0
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
..|.++++.++.+ +|.+..|++++++.+...+.+++..+++.|+|.++.+..++++.+++.++-... + .+.++.+-
T Consensus 31 vgPLL~~Ir~~~g-ls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~--~~~L~~gt 106 (395)
T COG2807 31 VGPLLDEIRQDLG-LSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G--LPLLFLGT 106 (395)
T ss_pred hhhhHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c--HHHHHHHH
Confidence 5888999999998 999999999999999999999999999999999999999999999999999988 6 79999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
.+.|.|.+...+ .+..+.+.+| |+-+..+++|.+..++|..+++.++..+ +||......+.++++ +++.|+
T Consensus 107 ~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~all-Al~~Wl- 183 (395)
T COG2807 107 LLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALL-ALLIWL- 183 (395)
T ss_pred HHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHH-HHHHHh-
Confidence 999999999999 9999999996 4569999999999999888887777666 799999999999988 444443
Q ss_pred CCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHH
Q psy8697 191 APESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVI 270 (508)
Q Consensus 191 l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
|...|. +... .+.+.++..+ ++++|.. +.+.
T Consensus 184 -Pq~~r~-----------~~~~-------------------------------~~~~~~~~~~-vw~~~~a-----W~vt 214 (395)
T COG2807 184 -PQALRE-----------QAAS-------------------------------IATKLVSVRK-VWRSPLA-----WQVT 214 (395)
T ss_pred -hhcccc-----------cccc-------------------------------cccccccccc-cccCchh-----HHHH
Confidence 221110 0000 0000011111 5556643 3455
Q ss_pred HHHHHhhcccchhhhcHHHHHHHhCCcchhh-HHHHHHHHHHHHHHHHHHHhhccc-CCeeehhhhhhHHHHHHHHHhhc
Q psy8697 271 LFTLQQFTGVYPVIFYAMQLFKEVGTEIDES-HALVFLGIIRFGMSVVTTVLARGF-GRKQLLIVSAAGLGVSSILLSSN 348 (508)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~l~~~ 348 (508)
+++..|...+|....|+|.++.|.|++.+.+ ....+..+.+++.++....+.+|. ++|+.......++.++.+.+.
T Consensus 215 LfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~-- 292 (395)
T COG2807 215 LFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLL-- 292 (395)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH--
Confidence 5666666778999999999999999977664 778888899999999999999975 466666666667777776665
Q ss_pred cccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhH
Q psy8697 349 LLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPW 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (508)
+... ...+.. .++++.+. .+..|+..
T Consensus 293 ---------------~~P~------------------------------------~~~~lw--~~llG~G~-G~~F~laL 318 (395)
T COG2807 293 ---------------LAPG------------------------------------QLPILW--ALLLGLGQ-GGAFPLAL 318 (395)
T ss_pred ---------------Hhhh------------------------------------hHHHHH--HHHHhCcc-chHHHHHH
Confidence 3111 111111 23333322 23345555
Q ss_pred hhhhccC-cccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhheeEE
Q psy8697 429 TMISELL-PSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGFVYF 490 (508)
Q Consensus 429 ~~~~e~~-p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~ 490 (508)
+.+.+-. .++..+.-.|+.+.++++-..+||.++|++.|. +|...+..++.+.++..+.-+.
T Consensus 319 ~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 319 TLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 5555544 445568889999999999999999999999999 6777777777766666555443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-19 Score=183.97 Aligned_cols=388 Identities=12% Similarity=0.100 Sum_probs=244.2
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc------CCcchH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA------DPGNIE 110 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~------~~~~~~ 110 (508)
+..+.+.++++++ ++..+.+++.++. .....++++.|+++||+|||+++.++.+++.++.++++++ .+ ++
T Consensus 46 fsv~s~~L~~~lg-ls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s--~~ 121 (591)
T PTZ00207 46 FNLISGAMQARYN-LTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS--VV 121 (591)
T ss_pred HHHHHHHHHHHhC-cCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc--HH
Confidence 4566788888888 9999999998774 4455678889999999999999999999999999999997 57 99
Q ss_pred HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHH-HHHHHHhh--hhHHHHHHHHHHHHHHHHh
Q psy8697 111 LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILL-TTILNLYL--DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 111 ~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~-g~~l~~~l--~wr~~f~~~~~~~~~~~~~ 186 (508)
.+.+.|++.|+|.+...+ ....+.+++| ++||++.++...+.++|.++ +++...++ +|+..|++.+++.++..++
T Consensus 122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 9999999986 78999999999999999975 55555555 8999999999999887777
Q ss_pred hhhcCCCCc--hhhhhcccccchhhhHHHHH-------------------------------HHHHH-------------
Q psy8697 187 LICFAPESP--HWLINMDRTANVNKRMAKAE-------------------------------KSLKF------------- 220 (508)
Q Consensus 187 ~~~~l~esp--~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~------------- 220 (508)
...++++.| ++..++.+.++.++...+.. ..+..
T Consensus 201 ~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~ 280 (591)
T PTZ00207 201 AIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFA 280 (591)
T ss_pred HHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 777665544 33222211110000000000 00000
Q ss_pred ---H----------------hCC-hh-hhHHHHHH-HH------Hhhhh------h-hhhhhhHHHHHHHhcCcccchhH
Q psy8697 221 ---L----------------NRN-PE-IFEKEWRV-LC------QVRTR------Y-DETRNKKALWRQILTTRECYKPL 265 (508)
Q Consensus 221 ---~----------------~~~-~~-~~~~~~~~-~~------~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 265 (508)
+ +.. ++ +.+++..+ .+ +.+.+ + ...+...+.++ .+++..+|
T Consensus 281 ~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q-~l~~~d~W--- 356 (591)
T PTZ00207 281 VTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIE-GLKTARLW--- 356 (591)
T ss_pred HHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHH-HHhchhHH---
Confidence 0 000 00 00000000 00 00000 0 00011114455 55555444
Q ss_pred HHHHHHHHHHhhcccchhhhcHHHHHHHh-CCcchh--hH-HHHHHHHHHHHHHHHHHHhhcccCCee--------ehhh
Q psy8697 266 ILLVILFTLQQFTGVYPVIFYAMQLFKEV-GTEIDE--SH-ALVFLGIIRFGMSVVTTVLARGFGRKQ--------LLIV 333 (508)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~-~~~~~~~~~~~~~~~~~~l~dr~grr~--------~l~~ 333 (508)
+..+.+++..+.-......+..+.+.. |.+.+. .. ...+.++.+.+|++..|++.....+|+ ....
T Consensus 357 --ll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~ 434 (591)
T PTZ00207 357 --CLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF 434 (591)
T ss_pred --HHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence 333334444444455667777888887 763433 32 577888999999999998773222221 2222
Q ss_pred hhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHH
Q psy8697 334 SAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFIL 413 (508)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (508)
...++.++.+++. .. . ......+..+
T Consensus 435 ~~~~~~~~~lll~-----------------~~--~-----------------------------------p~~~L~~~~~ 460 (591)
T PTZ00207 435 IPSVCIITMLTLF-----------------LT--L-----------------------------------PKAALPLPYF 460 (591)
T ss_pred HHHHHHHHHHHHH-----------------HH--C-----------------------------------CccHhHHHHH
Confidence 2222444444444 21 1 1112223333
Q ss_pred HHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHH-HHHhHHHhhh-c-------------cchhHHHHH
Q psy8697 414 LYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFM-VKAFPFAIHS-S-------------VIGTFNVFG 478 (508)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~-~~~~g~l~~~-g-------------~~~~~~~~~ 478 (508)
+.+.+.+.. .++....++|+|. ++-|+-+-+.....-+|+.+- ..+.|.++|. . +..+|++.+
T Consensus 461 lvg~~~G~~-~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~ 538 (591)
T PTZ00207 461 IAAFANGFM-AATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLL 538 (591)
T ss_pred HHHHHhhHh-HHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHH
Confidence 333444443 4555689999999 787888888888888888776 5678888875 1 346888888
Q ss_pred HHHHHhhheeEEE
Q psy8697 479 LVSFTLVGFVYFY 491 (508)
Q Consensus 479 ~~~~~~~~~~~~~ 491 (508)
++++++.+.....
T Consensus 539 ~~~~~g~~~s~~l 551 (591)
T PTZ00207 539 GLSFLAFITSTYV 551 (591)
T ss_pred HHHHHHHHHHhhe
Confidence 8888877664443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=186.03 Aligned_cols=364 Identities=14% Similarity=0.164 Sum_probs=225.9
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
....++.+..+.+ +.....|+.+.+.++.+++.++.|.++|.||||..++.+.++..+|++.++.++| ...++++.
T Consensus 63 ~a~~l~~I~~diG--~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~--~~~~iag~ 138 (599)
T PF06609_consen 63 PASILPYINADIG--GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN--MNTFIAGM 138 (599)
T ss_pred cHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc--HHHHHHHH
Confidence 4556788888887 4578899999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhcchhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCC
Q psy8697 117 ICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 117 ~l~G~~~g~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~ 192 (508)
.+.|+|.|........++|..|.|.|+...++.....-.....++.++..+ +|||.|++..+...+..++..++..
T Consensus 139 ~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 139 VLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred HHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhC
Confidence 999999887777666689999999998888777766656666777777766 8999999999988775544444332
Q ss_pred CCchhhhhcccccchhhhHHHHHHHHHHHh------------------CChh---hhHHHHHHHH---------Hhhhhh
Q psy8697 193 ESPHWLINMDRTANVNKRMAKAEKSLKFLN------------------RNPE---IFEKEWRVLC---------QVRTRY 242 (508)
Q Consensus 193 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~---~~~~~~~~~~---------~~~~~~ 242 (508)
. |++...+.++ ....+..+.++.+. +... ........+- ---|..
T Consensus 219 P-P~~~~~~~~~----~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~ 293 (599)
T PF06609_consen 219 P-PPRAQLHGRK----LSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWF 293 (599)
T ss_pred C-Cchhhhcccc----CcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhh
Confidence 2 2221111000 01111111111110 0100 0000000000 000000
Q ss_pred hhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcc----hhhHHHHHHHHHHHHHHHH
Q psy8697 243 DETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEI----DESHALVFLGIIRFGMSVV 317 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~----~~~~~~~~~~~~~~~~~~~ 317 (508)
...+.+--+.+ ++++++.. ...++..+.....++....+.|..... .+.+. .........+++.+.+.++
T Consensus 294 ~~~~~Pl~P~~-Lf~~~r~~----~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i 368 (599)
T PF06609_consen 294 GAPKDPLFPHR-LFKDRRGF----AALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVI 368 (599)
T ss_pred ccCCCCcCCHH-HhccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHH
Confidence 01111222344 66664322 222122222222244555555655544 33322 1235566677788888888
Q ss_pred HHHhhcccCCeeeh-hhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCcc
Q psy8697 318 TTVLARGFGRKQLL-IVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSC 396 (508)
Q Consensus 318 ~~~l~dr~grr~~l-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
.+.+..+++|-|.. +++..++.+.+-++. .... +
T Consensus 369 ~g~l~~~ir~~Kw~li~~~~~~ta~~Gama-----------------~~~~-~--------------------------- 403 (599)
T PF06609_consen 369 LGLLFSKIRHIKWQLIFGSVLMTAFCGAMA-----------------AVRP-D--------------------------- 403 (599)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHH-----------------HccC-C---------------------------
Confidence 99999888875544 466656555444444 2111 1
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8697 397 VDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH 467 (508)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~ 467 (508)
+.........+.+.+.+....+. .+.+.-..|++.-|++.|+..+++.+|+.++..++..+..
T Consensus 404 -------n~~~~i~~~~l~g~giG~~~~~~-~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 404 -------NKNAAIAFLVLAGFGIGGILVPA-IVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred -------CcchHHHHHHHHHHhHHHHHHHH-HHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11122222333333333333333 3666667899999999999999999999999888866653
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=184.47 Aligned_cols=328 Identities=14% Similarity=0.094 Sum_probs=207.0
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhc----ccchh-HHHHHHHHHHHHHHHHHhcCCc----chHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY----IGRKW-SLILVCVPYIISSLLTILADPG----NIEL 111 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr----~Grk~-~l~~~~~~~~i~~~l~~~~~~~----~~~~ 111 (508)
..++.++.+ +++.+.|.+.++..+..++..|+.|+++|| +|||| .++.+.+..+++.++....++. .++.
T Consensus 33 ~~~~t~~~g-ls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 33 AYFYTDVFG-LSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 455666666 999999999999999999999999999998 78855 5556777777777665555431 2455
Q ss_pred HHHHHHHhhcchhhHHH-HHHHhhhcc-CCCCchhHHHHHHHHHHHHHHHHHHHHHh----h-------hhHHHHHHHHH
Q psy8697 112 LYLSKICAGIGGGMSTV-AMVYVSEIC-HENFRPAILCLNSVFISCGILLTTILNLY----L-------DWRSLSYCFLA 178 (508)
Q Consensus 112 l~~~r~l~G~~~g~~~~-~~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~g~~l~~~----l-------~wr~~f~~~~~ 178 (508)
+++..++.+.+...... ..++.+|+. ++++|++..++......+|..+++.+... + +|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 66667777777666666 778999988 55789998888888888877777654322 2 68888888888
Q ss_pred HHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcC
Q psy8697 179 LVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTT 258 (508)
Q Consensus 179 ~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (508)
+.++..++..+..+|.++. ++ + ++.+..+.... .+++
T Consensus 192 i~~v~~~~~~~~~~e~~~~-----------~~--~-----------------------------~~~~~~~~~~~-~~~n 228 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYTP-----------EV--D-----------------------------NSSSVWKDLKL-LLGN 228 (444)
T ss_pred HHHHHHHHHhCCeEEecCC-----------CC--c-----------------------------CCCCHHHHHHH-HhCC
Confidence 8777555555555553210 00 0 00011122222 6777
Q ss_pred cccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhH
Q psy8697 259 RECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAG 337 (508)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 337 (508)
+.++......++.....+.. ....+++.+. .+.+...........+..+++.++.+++.||+|+|+.+..+..+
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~-----~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~ 303 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTR-----GGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVA 303 (444)
T ss_pred chHHHHHHHHHHHHHHHHHH-----hhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 76554333222222222111 1111222222 11111112333344566778888999999999999988877765
Q ss_pred HHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHH
Q psy8697 338 LGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVF 417 (508)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (508)
..+..+.+. .... .+.+...+...+.+.
T Consensus 304 ~~~~~~~~~-----------------~~~~-----------------------------------~~~~~~~~~~~i~g~ 331 (444)
T PRK09669 304 FVILSALIF-----------------FIPP-----------------------------------SNVWLIFALNILFNF 331 (444)
T ss_pred HHHHHHHHH-----------------HhCc-----------------------------------chHHHHHHHHHHHHH
Confidence 554443333 1110 122333333333333
Q ss_pred HHhhcchhhhHhhhhccCc-------ccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-cc
Q psy8697 418 FSAVGVIVIPWTMISELLP-------SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SV 470 (508)
Q Consensus 418 ~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~ 470 (508)
+.+ ...+..+++++|..+ .+..|...|..+.+..+|..+++.+.|.+.+. |+
T Consensus 332 ~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 332 IQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333 345667788888875 33457788999999999999999999999887 65
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-19 Score=183.36 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=118.0
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhc-ccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY-IGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr-~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~ 119 (508)
..+++++++ .++.+.+++.+.+........+++|+++|| +|||++++.+.++.+++.++++++++ ..+.+.++|+++
T Consensus 45 ~~yl~~~lg-~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~-~~~~l~~~~~l~ 122 (500)
T PRK09584 45 AVYLVKQLG-MSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH-DAGIVYMGMATI 122 (500)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHH
Confidence 345556666 888888888888776666667889999999 59999999999999999999998753 166778899999
Q ss_pred hcchhhHHH-HHHHhhhccCCCC--chhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q psy8697 120 GIGGGMSTV-AMVYVSEICHENF--RPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLI 182 (508)
Q Consensus 120 G~~~g~~~~-~~~~i~e~~~~~~--rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~ 182 (508)
|++.|...+ ..+++.|++|+++ |+.+.++++.+.++|..+||.+++++ |||+.|++.++..++
T Consensus 123 gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 123 AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 999999999 9999999998654 45678888999999999999999988 899999998765554
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=173.54 Aligned_cols=355 Identities=14% Similarity=0.086 Sum_probs=234.6
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhccc-chhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIG-RKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~G-rk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
.|+++..-++.+ .|..|+|.+.++..+...++++++|.++||++ +||.+.+..++.++...+....++ ++.+++.-
T Consensus 22 ~p~~~~~L~~~G-~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~--f~~~~~~~ 98 (400)
T PF03825_consen 22 LPYLPLYLESRG-FSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS--FWWLFVIM 98 (400)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 566777777777 99999999999999999999999999999986 577888888888887778888888 99888888
Q ss_pred HHhhcchhhHHH-HHHHhhhccCC--CCchhHHHHHHHHHHHHHHH-HHHHHHhhh---hHHHHHHHHHHHHHHHHhhhh
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHE--NFRPAILCLNSVFISCGILL-TTILNLYLD---WRSLSYCFLALVLISGLVLIC 189 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~--~~rg~~~~~~~~~~~lG~~~-g~~l~~~l~---wr~~f~~~~~~~~~~~~~~~~ 189 (508)
++..+......| ..++..+...+ ++-|+.-.+-+.++.++... +..+.+..+ ....+++.+...++ .....+
T Consensus 99 ~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l-l~~~~l 177 (400)
T PF03825_consen 99 LLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLL-LAGFAL 177 (400)
T ss_pred HHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH-HHHHHH
Confidence 888888888888 88888877753 23344333333333333222 122222222 23345555555544 334455
Q ss_pred cCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHH
Q psy8697 190 FAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLV 269 (508)
Q Consensus 190 ~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (508)
.+|+.|+....+ ++ .++...++.++ ++|+|+...-++...
T Consensus 178 ~lp~~~~~~~~~-------~~--------------------------------~~~~~~~~~~~-llk~~~~~~Fll~~~ 217 (400)
T PF03825_consen 178 FLPKTPPKRSAK-------ES--------------------------------VKKLLGLDALK-LLKNPRFLVFLLAAF 217 (400)
T ss_pred hCCCCccccccC-------CC--------------------------------cccccchHHHH-HhcCccHHHHHHHHH
Confidence 678876210000 00 01111223344 888887554222222
Q ss_pred HHHHHHhhcccchhhhcHHHHHHHhC-Ccchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhh
Q psy8697 270 ILFTLQQFTGVYPVIFYAMQLFKEVG-TEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSS 347 (508)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~ 347 (508)
+... .......|.+.++++.| .+.+. .....+..+.+++.-...+++..|+|.|+++.++.+..++=..++.
T Consensus 218 l~~~-----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a- 291 (400)
T PF03825_consen 218 LIGI-----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA- 291 (400)
T ss_pred HHHH-----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-
Confidence 2221 24456778888899977 44433 3455566678889999999999999999999999999888887777
Q ss_pred ccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHH----HHHHHHHhhcc
Q psy8697 348 NLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFI----LLYVFFSAVGV 423 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 423 (508)
.... +.+...... .+.+..++...
T Consensus 292 ----------------~~~~------------------------------------~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 292 ----------------YFSD------------------------------------PWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred ----------------HhcC------------------------------------CcHHHHHHHHHHHhhhhHHHHHHH
Confidence 3101 222222222 23455454433
Q ss_pred hhhhHhhhhccCcccchhhHHHHHHHH-HHHHHHHHHHHhHHHhhh-ccch------hHHHHHHHHHHhhheeEEEeccC
Q psy8697 424 IVIPWTMISELLPSYARGVCSGLMISY-GYVCMFFMVKAFPFAIHS-SVIG------TFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 424 ~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~~g~~i~~~~~g~l~~~-g~~~------~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
.....++.+..|++.|+++.++.+.. ..+|..+|..+.|++.|. |... .+.+.+++.++..++.+++.||+
T Consensus 320 -~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 320 -AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred -HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 33458999999999999999998876 679999999999999998 5443 34455555555555555555544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=173.74 Aligned_cols=361 Identities=12% Similarity=0.101 Sum_probs=223.6
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHH--HHHHHHHH-Hh----cCCcchH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVP--YIISSLLT-IL----ADPGNIE 110 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~--~~i~~~l~-~~----~~~~~~~ 110 (508)
.|+.+...++..+++.+++|.+.++..+...+.+++.|.++||+|.||-++....+ ...+.+.. .+ ..| .+.
T Consensus 27 ~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n-~~l 105 (412)
T PF01306_consen 27 LPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSN-FWL 105 (412)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT--HH
T ss_pred HHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 45566555553349999999999999999999999999999999977654433322 22233222 22 223 123
Q ss_pred HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHh
Q psy8697 111 LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 111 ~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~ 186 (508)
..+++-+..|+......+ .-+|+.++.. +.+.-.|-.-...++|.+++..+++.+ +-+..|++....+++..++
T Consensus 106 g~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~ll 183 (412)
T PF01306_consen 106 GAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLL 183 (412)
T ss_dssp HHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHH
Confidence 344455556666666667 7777666542 223334444556667777777777766 5667788777666664444
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
..+..||.++..... + ..+.++++.+.++.++ ++|+|++|.-.+
T Consensus 184 l~~~~~~~~~~~~~~-------~----------------------------~~~~~~~~~~~~~~~~-l~k~~~fw~~~l 227 (412)
T PF01306_consen 184 LLLLKPDVPPQAEVA-------D----------------------------ALGAKKDKVSLKDVLS-LFKMRNFWFFVL 227 (412)
T ss_dssp HHSS---SSSSS-SS-------T----------------------------TSSS------HHHHHH-HTTSHHHHHHHH
T ss_pred HHHcCCcCchhhhhh-------c----------------------------ccccCCCCCcHHHHHH-HhcchhHHHHHH
Confidence 444545543211111 0 0000011122344455 888887666333
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHHhCCcc----hh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKEVGTEI----DE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVS 341 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 341 (508)
........ +..+....+.++...--+. .. +...+.-.+.+++...+..++.+|+|.|+.++++..++++=
T Consensus 228 ~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iR 302 (412)
T PF01306_consen 228 FVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIR 302 (412)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence 33333222 3444444566665531111 11 24455566778888999999999999999999999999999
Q ss_pred HHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhh
Q psy8697 342 SILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAV 421 (508)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
....+ + .++.+.....=.+.+.-+..
T Consensus 303 i~~~~-----------------~-------------------------------------~~~~~~i~~~klLH~~e~~l 328 (412)
T PF01306_consen 303 IIGSG-----------------F-------------------------------------ATNPWVISLIKLLHALEFPL 328 (412)
T ss_dssp HHHHH-----------------T---------------------------------------SHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-----------------h-------------------------------------hcchHHHHHHHHHHHHHHHH
Confidence 88888 4 12445555554555555555
Q ss_pred cchhhhHhhhhccCcccchhhHHHHH-HHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCC
Q psy8697 422 GVIVIPWTMISELLPSYARGVCSGLM-ISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKG 497 (508)
Q Consensus 422 ~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (508)
...+. .-|+.+.+|++..++.+.+. +...++|.++.+.+.|.+.|+ |++.+|++++.+.+...++..+.+++.++
T Consensus 329 ~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 329 LLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 44444 48999999999999999885 577899999999999999999 99999999999888777777766665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=179.77 Aligned_cols=336 Identities=12% Similarity=0.055 Sum_probs=207.4
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhh----cccch-hHHHHHHHHHHHHHHHHHhcCCc----chHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMD----YIGRK-WSLILVCVPYIISSLLTILADPG----NIEL 111 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~D----r~Grk-~~l~~~~~~~~i~~~l~~~~~~~----~~~~ 111 (508)
..++.+..+ +++.++|.+..+.-+..++..|+.|.++| |+||| +.++.+....+++..+....++. .+..
T Consensus 30 ~~yyt~v~G-ls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~ 108 (473)
T PRK10429 30 MYYYTDVVG-LSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF 108 (473)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344555555 99999999999999999999999999999 66995 56667888878876666544321 1335
Q ss_pred HHHHHHHhhcchhhHHH-HHHHhhhcc-CCCCchhHHHHHHHHHHHHHHHHHHHHHh----h-------hhHHHHHHHHH
Q psy8697 112 LYLSKICAGIGGGMSTV-AMVYVSEIC-HENFRPAILCLNSVFISCGILLTTILNLY----L-------DWRSLSYCFLA 178 (508)
Q Consensus 112 l~~~r~l~G~~~g~~~~-~~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~g~~l~~~----l-------~wr~~f~~~~~ 178 (508)
+++..++.+++.....+ ..++..|.. ++++|.+..++...+.++|..+.+.+... + +|+....+.++
T Consensus 109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~ 188 (473)
T PRK10429 109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIA 188 (473)
T ss_pred HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 56666777888888888 889999999 68999999998777777765555443321 1 57777777777
Q ss_pred HHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcC
Q psy8697 179 LVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTT 258 (508)
Q Consensus 179 ~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (508)
+.++..++..+..||.++.. . .+.+ ++++.+.+..++.+++|
T Consensus 189 ~~~~~~~~~~~~~~e~~~~~--~-------~~~~-----------------------------~~~~~~~~~~~~~~~~n 230 (473)
T PRK10429 189 FFIVSTIITLRNVHEVYSSD--N-------QVSA-----------------------------EGSHLTLKDIVALIYKN 230 (473)
T ss_pred HHHHHHHHHHcCceecCCcc--c-------cccc-----------------------------cccCCCHHHHHHHHhcC
Confidence 77765555555567643100 0 0000 00111222333325566
Q ss_pred cccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhH
Q psy8697 259 RECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAG 337 (508)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 337 (508)
|.++..+....+.... ......+.+++.+....+.+. .......++..+++.++.+++.||+|+|+.+..+..+
T Consensus 231 ~~~~~ll~~~~~~~~~-----~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~ 305 (473)
T PRK10429 231 DQLSCLLGMALAYNIA-----SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIF 305 (473)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5543322222222211 222223333333332112222 2344455577888889999999999999998877776
Q ss_pred HHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHH
Q psy8697 338 LGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVF 417 (508)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (508)
..++.+.+. .....+. ...+...+...+...
T Consensus 306 ~~~~~~~~~-----------------~~~~~~~--------------------------------~~~~~~~i~~~l~g~ 336 (473)
T PRK10429 306 PVLSCGVLL-----------------LMGLAAP--------------------------------HNALLIVIAGILLNI 336 (473)
T ss_pred HHHHHHHHH-----------------HHhccCc--------------------------------hhHHHHHHHHHHHHH
Confidence 665554443 2111100 122333333333333
Q ss_pred HHhhcchhhhHhhhhccCc-------ccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-cc
Q psy8697 418 FSAVGVIVIPWTMISELLP-------SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SV 470 (508)
Q Consensus 418 ~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~ 470 (508)
+.+. ..+..+++.+|..+ .+..|...|.......++..+++.+.|.+.+. |+
T Consensus 337 ~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 337 GTAL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333 34555688888855 34457789999999999999999999999876 54
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=177.08 Aligned_cols=365 Identities=13% Similarity=0.034 Sum_probs=228.1
Q ss_pred hhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhccc-----chhHHHHHHHHHH-HHH
Q psy8697 25 HMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIG-----RKWSLILVCVPYI-ISS 98 (508)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~G-----rk~~l~~~~~~~~-i~~ 98 (508)
..+..+.. .+......+.+.++++ +++++++...+...+...+-.+ +|+++||++ ||+.++++.++.. ++.
T Consensus 34 ~y~~qGl~-~l~~~~~~~~l~~~lg-~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~ 110 (468)
T TIGR00788 34 VLFVKGIA-GLMRLPLSPMLTDDLG-LDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILY 110 (468)
T ss_pred HHHHhhHH-HHhhhhhhHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Confidence 33445666 4445555666766677 9999999999999999999766 999999997 6777777776663 443
Q ss_pred HHHHhcCCcchHHHH-HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHH---HHHHHHHHHHHHHHHHHHHhh----hh
Q psy8697 99 LLTILADPGNIELLY-LSKICAGIGGGMSTV-AMVYVSEICHENFRPAIL---CLNSVFISCGILLTTILNLYL----DW 169 (508)
Q Consensus 99 ~l~~~~~~~~~~~l~-~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~---~~~~~~~~lG~~~g~~l~~~l----~w 169 (508)
...+..++ ..... +.+++.+++.+...+ +.++..|..+ +++.... +......++|.++|+.+++.+ +|
T Consensus 111 ~~l~~~~~--~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~ 187 (468)
T TIGR00788 111 GLLPGKVS--SAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLT 187 (468)
T ss_pred Hhcccccc--hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33343344 44444 488999999999999 9999999998 5444432 333333457888888888876 89
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhH
Q psy8697 170 RSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKK 249 (508)
Q Consensus 170 r~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (508)
|..|++.+++.++ ..+..+++||++.....+ .++++.... . .. ........++..+
T Consensus 188 ~~~f~~~a~l~ll-~~~~~~~~~E~~~~~~~~-------~~~~~~~~~-~--------------~~-~~~~~~~~~~~~~ 243 (468)
T TIGR00788 188 RILFLITAALLLL-QLFVSNLSKERRAFVRPR-------IGTYLEMNM-A--------------LL-TLGVLANVKVQIL 243 (468)
T ss_pred chHHHHHHHHHHH-HHHHHHhccccccccccc-------ccccchhhh-h--------------hh-hhhHHHHHHHHHH
Confidence 9999999988888 455567788863110000 000000000 0 00 0000000112233
Q ss_pred HHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCe
Q psy8697 250 ALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRK 328 (508)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr 328 (508)
..++ .+++|..++.+...++.+.. ..........+.+ ...|++.+. .......+++.+++..+.+++.+|++.|
T Consensus 244 ~l~~-~l~~~~i~~~l~fifl~~~~-~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r 318 (468)
T TIGR00788 244 GLRG-AIQLLEIAKPLIFIFLSYAN-LPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR 318 (468)
T ss_pred HHHH-HHhcHHHHHHHHHHHHHHhh-cCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 4445 56666655533332221111 1111111111222 235666555 4666677788999999999999999999
Q ss_pred eehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHH
Q psy8697 329 QLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLS 408 (508)
Q Consensus 329 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (508)
+.+.++.++.+++.+... ..... |.... -....+..
T Consensus 319 ~~l~~~~~l~~~~~~~~~-----------------~l~~~-----------~~~~~----------------gi~~~~~~ 354 (468)
T TIGR00788 319 LLFGVTTLLYTLSSLFDL-----------------ILVKR-----------WNLAF----------------GISDEVFV 354 (468)
T ss_pred HHHHHHHHHHHHHHhCce-----------------eeeec-----------ccccc----------------CCCCeeee
Confidence 998888888877765543 11100 00000 00022223
Q ss_pred HHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c
Q psy8697 409 LLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S 469 (508)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g 469 (508)
.....+.....+....+. ..++.+..|++.+|+.+++.+++.++|..+++.+.+.+.+. |
T Consensus 355 ~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 355 LGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred eehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333334445555555565 48999999999999999999999999999999999999887 6
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-17 Score=164.60 Aligned_cols=354 Identities=18% Similarity=0.201 Sum_probs=239.6
Q ss_pred chhHHHHHHHHHhhhhhchhhhhhcccchhH-HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHh
Q psy8697 56 FGPTTSFVIITSPVGSTVIGPIMDYIGRKWS-LILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYV 133 (508)
Q Consensus 56 ~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~-l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i 133 (508)
.++..++..+..++..|+.|.++|+-|+||. +.....+..+++.+..+.+...++...+.-++.-++.+...+ ..+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888999999999999999999987764 555666666777777775332356666666677778888888 99999
Q ss_pred hhccCCCCc--------------------------hhHHHHHHHHHHHHHHHHHHHHHhh------------hhHHHHHH
Q psy8697 134 SEICHENFR--------------------------PAILCLNSVFISCGILLTTILNLYL------------DWRSLSYC 175 (508)
Q Consensus 134 ~e~~~~~~r--------------------------g~~~~~~~~~~~lG~~~g~~l~~~l------------~wr~~f~~ 175 (508)
.|..+++++ ++..+.-.....+|.++.-.+...+ +-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999999998 9999998888889988887776655 25888999
Q ss_pred HHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy8697 176 FLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQI 255 (508)
Q Consensus 176 ~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (508)
.++..++..+...+++||.|+....+ +...-... ..+..++ .
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~-------~~~~~~~~------------------------------g~~~l~~-t 273 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLP-------SGSSYLRF------------------------------GFKRLWR-T 273 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCC-------cchhHHHH------------------------------HHHHHHH-H
Confidence 88888887888888999886421000 00000000 1111111 1
Q ss_pred hcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhh-HHHHHHHHHHHHHHHHHHHhhcccCCe--eeh
Q psy8697 256 LTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDES-HALVFLGIIRFGMSVVTTVLARGFGRK--QLL 331 (508)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~grr--~~l 331 (508)
+|+-+-.+ -+...++..+....+.+.+......+..+ .|++..+. .......+.+++|+++.+++.||+|.| +.+
T Consensus 274 ~k~~~~~~-~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l 352 (477)
T PF11700_consen 274 FKEIRKLR-QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL 352 (477)
T ss_pred HHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 22111111 12223333333334566677777777764 78876654 667778899999999999999999998 666
Q ss_pred hhhhhHHHHHHHH--HhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHH
Q psy8697 332 IVSAAGLGVSSIL--LSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSL 409 (508)
Q Consensus 332 ~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (508)
..+.++..+..+. ++ +.... . .....+...
T Consensus 353 ~~~l~~~~~i~~~g~~G-----------------~~~~~-~------------------------------g~~~~~~f~ 384 (477)
T PF11700_consen 353 LISLILWIIIPLYGLFG-----------------FWPSF-F------------------------------GLKSPWEFW 384 (477)
T ss_pred HHHHHHHHHHHHHHHHH-----------------hhhcc-c------------------------------CcccHHHHH
Confidence 6555544222221 21 10000 0 011334333
Q ss_pred HHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhhe
Q psy8697 410 LFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGF 487 (508)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~ 487 (508)
+... +.+.+..+..+...++.+|+.|+++.+..+|+....+...+++||.++|.+.+. +.+..+....++.+++.++
T Consensus 385 ~~a~-~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l 463 (477)
T PF11700_consen 385 VLAV-LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL 463 (477)
T ss_pred HHHH-HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 3333 333444456677889999999999999999999999999999999999999998 4777787777777777665
Q ss_pred eEEEeccCCCC
Q psy8697 488 VYFYLPETKGK 498 (508)
Q Consensus 488 ~~~~~~~~~~~ 498 (508)
. ...+..|++
T Consensus 464 l-~~v~~~~g~ 473 (477)
T PF11700_consen 464 L-FFVDVEKGR 473 (477)
T ss_pred H-hhccchhhh
Confidence 5 445555544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-17 Score=165.44 Aligned_cols=143 Identities=19% Similarity=0.160 Sum_probs=116.0
Q ss_pred hhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc-cchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhc
Q psy8697 43 YLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI-GRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGI 121 (508)
Q Consensus 43 ~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~-Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~ 121 (508)
++.++++ .++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++.+...+ +...+.++..+.++
T Consensus 35 yL~~~lg-ls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~-~~~~~~l~l~li~i 112 (493)
T PRK15462 35 YLTNQLK-YDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI-HPSFLYLSLAIIVC 112 (493)
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHH
Confidence 3445555 8999999999999999999999999999999 9999999999999999887765432 02334444445556
Q ss_pred chhhHHH-HHHHhhhccCCC--CchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 122 GGGMSTV-AMVYVSEICHEN--FRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 122 ~~g~~~~-~~~~i~e~~~~~--~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
|.|...+ ..++++|.+|++ +|..+.++...+.++|..++|.+.+++ |||+.|.+.++..++ .++..
T Consensus 113 G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l-~li~~ 185 (493)
T PRK15462 113 GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA-GLVIF 185 (493)
T ss_pred hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH-HHHHH
Confidence 6777778 889999999876 689999999999999999999999988 899999987765544 44333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-18 Score=171.95 Aligned_cols=329 Identities=17% Similarity=0.182 Sum_probs=232.7
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhh----cccchhH-HHHHHHHHHHHHHHHHhc-C-Cc----c
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMD----YIGRKWS-LILVCVPYIISSLLTILA-D-PG----N 108 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~D----r~Grk~~-l~~~~~~~~i~~~l~~~~-~-~~----~ 108 (508)
..+.+.+..+ +++...|.+..+..+-.++..|+.|.++| |+||||. ++.|..+.+++.++.... + +. .
T Consensus 24 ~~~f~~~~~g-l~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 24 LLYFYTDVLG-LSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 3455656666 99999999999999999999999999999 8998765 556888888888877766 4 11 1
Q ss_pred hHHHHHHHHHhhcchhhHHH-HHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHH
Q psy8697 109 IELLYLSKICAGIGGGMSTV-AMVYVSEICH-ENFRPAILCLNSVFISCGILLTTILNLYL-----------DWRSLSYC 175 (508)
Q Consensus 109 ~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----------~wr~~f~~ 175 (508)
...+.+..++..++...... ..++..|.++ +++|.+..+.-+.+..+|.++...+...+ +|++...+
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 34457777777888888888 9999999997 47899999999988888887555555443 49999999
Q ss_pred HHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy8697 176 FLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQI 255 (508)
Q Consensus 176 ~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (508)
.+++.++..++..+..+|.++ +.++. +++.+.+..+++.
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~-------------~~~~~----------------------------~~~~~~~~~~~~~ 221 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSV-------------EVTEQ----------------------------EKKISLRDSLRSL 221 (428)
T ss_pred HHHHHHHHhhhhhheeeeccc-------------ccccc----------------------------ccccccccchhhh
Confidence 999999877777778888211 00000 0111222223337
Q ss_pred hcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhh
Q psy8697 256 LTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVS 334 (508)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~ 334 (508)
+++|.+++.. ....+.. .+........+++.+. .|.+...........+..+++.++.++++||+|+|+.+..+
T Consensus 222 ~~nr~~~~l~-~~~~~~~----~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~ 296 (428)
T PF13347_consen 222 FRNRPFRILL-LAFFLQW----LAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIG 296 (428)
T ss_pred cccchHHHHH-HHHHHHH----hhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhh
Confidence 7777644422 2222221 2233444455666665 44443334556667788889999999999999999999999
Q ss_pred hhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHH
Q psy8697 335 AAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILL 414 (508)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (508)
..+.+++.+.+. +... .+.+...+...+
T Consensus 297 ~~~~~~~~~~~~-----------------~~~~-----------------------------------~~~~~~~i~~~l 324 (428)
T PF13347_consen 297 LLLAALGFLLLF-----------------FLGP-----------------------------------GSPWLVLILFIL 324 (428)
T ss_pred HHHHHHHHHHHH-----------------HHHh-----------------------------------hhHHHHHHHHHH
Confidence 999998888777 4221 134444444444
Q ss_pred HHHHHhhcchhhhHhhhhccCcc-------cchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 415 YVFFSAVGVIVIPWTMISELLPS-------YARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
.+.+.+. .....+++.+|..+. +..|...|+.+....++..+++.+.+.+.+.
T Consensus 325 ~gi~~~~-~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 325 AGIGYGA-FFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred hHhhhcc-cccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4444443 446667888988763 4458999999999999999999999988876
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=166.95 Aligned_cols=406 Identities=15% Similarity=0.141 Sum_probs=253.4
Q ss_pred cccchhhHHHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccc-hhHHHHHH
Q psy8697 13 LRKKSCTYVRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGR-KWSLILVC 91 (508)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Gr-k~~l~~~~ 91 (508)
...|+..++.....+.......+++....|++++-+.+.+.+..|++.++..+|.+++++..|++..|.|+ |+.++.|.
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 34455667777777776766666667778888886666889999999999999999999999999999997 88999999
Q ss_pred HHHHHHHHHH-Hhc--CCcchHHHHHHHHHhhcchhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-
Q psy8697 92 VPYIISSLLT-ILA--DPGNIELLYLSKICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL- 167 (508)
Q Consensus 92 ~~~~i~~~l~-~~~--~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l- 167 (508)
++.++|.++. ++. ++...+.++++|++.|+|.|......+|+++....++|.++++....+..+|..+||.+...+
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 9999999998 332 211378999999999999999888999999999999999999999999999999999998877
Q ss_pred ----------------hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHH
Q psy8697 168 ----------------DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKE 231 (508)
Q Consensus 168 ----------------~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (508)
-+..+-|+.+++.++..+++.++++|.++.-.++ +.+++ +
T Consensus 190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~-------~~~~~-~---------------- 245 (488)
T KOG2325|consen 190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDK-------KKRSV-E---------------- 245 (488)
T ss_pred hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcccc-------ccccc-h----------------
Confidence 1346778888888887777888899976532211 00000 0
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHhcCccc-chhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchhh--HHHHHHH
Q psy8697 232 WRVLCQVRTRYDETRNKKALWRQILTTREC-YKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDES--HALVFLG 308 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~ 308 (508)
+++.+ ++ ..+.++. +...+.+....+...+........+.+......+...+.. .......
T Consensus 246 -----~~~~~--~~---------~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~ 309 (488)
T KOG2325|consen 246 -----EEKSD--IE---------KVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLS 309 (488)
T ss_pred -----hhccc--hh---------hhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHH
Confidence 00000 00 1111111 2223333344443333333323444444444556644432 2333333
Q ss_pred HHHHHHHH---HHHHhh-cccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccC
Q psy8697 309 IIRFGMSV---VTTVLA-RGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEM 384 (508)
Q Consensus 309 ~~~~~~~~---~~~~l~-dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (508)
+.+++... ...+.. .++.+|..+..+......+.....- .+...+ ..
T Consensus 310 ~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~y----------------p~~~~s-------------~p 360 (488)
T KOG2325|consen 310 ISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTY----------------PWGFYS-------------GP 360 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeee----------------eccccc-------------cc
Confidence 33333322 222222 3434555555553333333332220 111110 11
Q ss_pred CCCCCCCCCCcccc--CCCCCcc---hHHHHHHHHHHHHHhhcc-hhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHH
Q psy8697 385 QVPPSAFNTSSCVD--HSSLSSD---WLSLLFILLYVFFSAVGV-IVIPWTMISELLPSYARGVCSGLMISYGYVCMFFM 458 (508)
Q Consensus 385 ~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~ 458 (508)
..++++.++..+.+ .++.... .....+.....++.+.-+ .....+.-+|+..++.++++.++....+..+..++
T Consensus 361 v~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~ 440 (488)
T KOG2325|consen 361 VQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVG 440 (488)
T ss_pred cccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhh
Confidence 22344444444422 3333332 222222222222222211 22234788999999999999999999999999999
Q ss_pred HHHhHHHhhh-ccchhHHHHHHHHHHhhhe
Q psy8697 459 VKAFPFAIHS-SVIGTFNVFGLVSFTLVGF 487 (508)
Q Consensus 459 ~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~ 487 (508)
|......... |+.+.+.+.+...++...+
T Consensus 441 ~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l 470 (488)
T KOG2325|consen 441 PIFSTAIFTLSGPRPVWIILLCLLLVVAAL 470 (488)
T ss_pred HHHHhhhHHhcCccHHHHHHHHHHHHHHHH
Confidence 9999888888 8777666655555544433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=164.74 Aligned_cols=326 Identities=11% Similarity=0.078 Sum_probs=194.3
Q ss_pred hhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc----cchhHH-HHHHHHHHHHHHHHHhcC-----CcchHH
Q psy8697 42 KYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI----GRKWSL-ILVCVPYIISSLLTILAD-----PGNIEL 111 (508)
Q Consensus 42 ~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~----Grk~~l-~~~~~~~~i~~~l~~~~~-----~~~~~~ 111 (508)
.++++..+ +++.+.|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++....+ +...+.
T Consensus 33 ~y~~~~~g-l~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 33 SYYTDVAG-VGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 45666666 8999999999999999999999999999996 777754 556555555444432112 101233
Q ss_pred HHHHHHHhhcchhhHHH-HHHHhhhccCC-CCchhHHHHHHHH-----HHHHHHHHHHHHHhh------hhHHHHHHHHH
Q psy8697 112 LYLSKICAGIGGGMSTV-AMVYVSEICHE-NFRPAILCLNSVF-----ISCGILLTTILNLYL------DWRSLSYCFLA 178 (508)
Q Consensus 112 l~~~r~l~G~~~g~~~~-~~~~i~e~~~~-~~rg~~~~~~~~~-----~~lG~~~g~~l~~~l------~wr~~f~~~~~ 178 (508)
.++..++.+++.+...+ ..++..|...+ ++|.+..++...+ ..+|..++|.++... +|.....+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v 191 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAI 191 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 45556777888888887 77777877755 6788877666543 335566666666543 12212223333
Q ss_pred HHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcC
Q psy8697 179 LVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTT 258 (508)
Q Consensus 179 ~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (508)
+.++..++.....||+++. + . ++...+..+++++++
T Consensus 192 ~~~~~~~~~~~~~~e~~~~---~-------~----------------------------------~~~~~~~~~~~l~~n 227 (448)
T PRK09848 192 AGMVLYFICFKSTRENVVR---I-------V----------------------------------AQPSLKISLQTLKRN 227 (448)
T ss_pred HHHHHHHHHHcCcEeccCC---C-------c----------------------------------cCCCHHHHHHHHhCC
Confidence 3333233334445654210 0 0 000111112227777
Q ss_pred cccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhhHH-HHHHHHHHHHHHHHHHHhhcccCCeeehhhhhh
Q psy8697 259 RECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDESHA-LVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAA 336 (508)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~-~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~ 336 (508)
|.++...+...+.... ......+.|.++++ .|.+...... .....+..+++.++.+++.||+|+|+.+..+..
T Consensus 228 ~~f~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~ 302 (448)
T PRK09848 228 RPLFMLCIGALCVLIS-----TFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGAL 302 (448)
T ss_pred chHHHHHHHHHHHHHH-----HHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 7654433222222221 22333445555554 3433222222 222245567788899999999999999999988
Q ss_pred HHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHH
Q psy8697 337 GLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYV 416 (508)
Q Consensus 337 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (508)
+..++.+.+. +... ...+.......+..
T Consensus 303 ~~~i~~~~~~-----------------~~~~-----------------------------------~~~~~~~~~~~l~g 330 (448)
T PRK09848 303 LGTCGYLLFF-----------------WVSV-----------------------------------WSLPVALVALAIAS 330 (448)
T ss_pred HHHHHHHHHH-----------------HcCc-----------------------------------hhHHHHHHHHHHHH
Confidence 8877776665 3100 02233333333333
Q ss_pred HHHhhcchhhhHhhhhccCccc-------chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-cc
Q psy8697 417 FFSAVGVIVIPWTMISELLPSY-------ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SV 470 (508)
Q Consensus 417 ~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~ 470 (508)
.+.+. ..+...++.+|..|.+ .+|...|+.+....+|..+++.+.+.+.+. |+
T Consensus 331 ~G~~~-~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 331 IGQGV-TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHH-HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333 3355567888877643 459999999999999999999999988766 54
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-16 Score=151.69 Aligned_cols=351 Identities=17% Similarity=0.149 Sum_probs=242.7
Q ss_pred CCccchhHHHHHHHHHhhhhhchhhhhhcccchh-HHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHhhcchhhHHH-
Q psy8697 52 FGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKW-SLILVCVPYIISSLLTILADPG-NIELLYLSKICAGIGGGMSTV- 128 (508)
Q Consensus 52 s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~-~l~~~~~~~~i~~~l~~~~~~~-~~~~l~~~r~l~G~~~g~~~~- 128 (508)
+.+..|...++..+-.++.+|..|.++|+.|+|| .+-+...+..++..+..++++. +++..++.-.+..++.....+
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 3455688888999999999999999999999665 5666777777788888887763 567777788899999999999
Q ss_pred HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----------------------hhHHHHHHHHHHHHHHHHh
Q psy8697 129 AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----------------------DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 129 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----------------------~wr~~f~~~~~~~~~~~~~ 186 (508)
-.+++.+..++++-++..++-.....+|..+.-+..... +-|..+.+.++..++..+.
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999999988888887777777776665554222 4688888888888887888
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
.++..||.++-. .+ . .+...+. -++.+.-++++.+.+. +
T Consensus 216 m~~~v~~~~~~~-~~-------~-~~~l~~g---------------------------~k~L~~t~k~i~~~~~-----i 254 (438)
T COG2270 216 MILNVHDAEKIS-SP-------P-PTALRNG---------------------------FKELKSTFKEIRGRKN-----L 254 (438)
T ss_pred HHhccccccccc-cc-------c-hHHHHHH---------------------------HHHHHHHHHHHhcccc-----h
Confidence 888888765310 00 0 0000000 0011111111333332 2
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHH-HhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFK-EVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSIL 344 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~ 344 (508)
..+++..+....+.+........+-. +.|++..+ ........+..++|+++.|++.||+|.|+++..+.++..+..+.
T Consensus 255 ~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~ 334 (438)
T COG2270 255 VLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALY 334 (438)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHH
Confidence 22233333333456677777777776 57776554 46677788899999999999999999999999888888777766
Q ss_pred HhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcch
Q psy8697 345 LSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVI 424 (508)
Q Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (508)
.. + .. ......++.. +.+.+-.+..
T Consensus 335 ~~-----------------~-~~------------------------------------~~~~f~i~gl-l~g~s~G~~q 359 (438)
T COG2270 335 LI-----------------F-LE------------------------------------GELDFWILGL-LVGTSLGGAQ 359 (438)
T ss_pred HH-----------------H-cc------------------------------------ccHHHHHHHH-HHHHhcchHH
Confidence 65 2 11 1122222222 2223333445
Q ss_pred hhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhheeEEEeccCCCCC
Q psy8697 425 VIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGFVYFYLPETKGKT 499 (508)
Q Consensus 425 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
....++..+++|+++.++.+|+++..+...++.+|.+.+.+.+. +.+..+..+.++..++.+ .+...|+.++++
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~-~L~~v~~~~~~~ 435 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL-LLLRVKVPGRRE 435 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh-hEEeecCCCCcc
Confidence 66679999999999999999999999999999999999999988 455555566665555544 444555554443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=149.75 Aligned_cols=363 Identities=17% Similarity=0.169 Sum_probs=218.1
Q ss_pred hhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhc-ccchhHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHHH
Q psy8697 42 KYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY-IGRKWSLILVCVPYIISSLLTIL---ADPGNIELLYLSKI 117 (508)
Q Consensus 42 ~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr-~Grk~~l~~~~~~~~i~~~l~~~---~~~~~~~~l~~~r~ 117 (508)
.+..++.+ +..++..++.+.|.....+-++++|++.|| +|-|..-++-+....+|.++++. .+. +|.+.++|+
T Consensus 68 ~~fk~d~n-i~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~a--Fw~M~~GRF 144 (459)
T KOG4686|consen 68 IDFKLDSN-IEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHA--FWTMLAGRF 144 (459)
T ss_pred hhhhcccc-cceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHH--HHHHHhhhe
Confidence 34444444 888899999999999999999999999997 68887666666666677777654 456 999999999
Q ss_pred HhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy8697 118 CAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-DWRSLSYCFLALVLISGLVLICFAPESP 195 (508)
Q Consensus 118 l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-~wr~~f~~~~~~~~~~~~~~~~~l~esp 195 (508)
+.|+|.....+ -..|+.-|+..|+-+.++|+.....-+|..+-..+..++ +.-.-++-...-..+ .+.+.+-...-.
T Consensus 145 ~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~L-G~~l~~~~~tc~ 223 (459)
T KOG4686|consen 145 LFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLL-GLWLCFEVKTCK 223 (459)
T ss_pred eeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHH-HHHHHHHHHHHH
Confidence 99999888888 999999999999999999999988888887665555555 111111101111111 111100000000
Q ss_pred hhhhhcccccchhh-hHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHH
Q psy8697 196 HWLINMDRTANVNK-RMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTL 274 (508)
Q Consensus 196 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (508)
..+.... .-+ .++.+++.+++ ++....+..+..+.. -+ .|++|...++++
T Consensus 224 ~slical----~lg~~D~rAerilh~-----------------e~g~~Ge~pkLtdv~--~f-~ppfw~~~iicv----- 274 (459)
T KOG4686|consen 224 QSLICAL----SLGLSDDRAERILHL-----------------EEGFLGEEPKLTDVN--TF-YPPFWVLVIICV----- 274 (459)
T ss_pred HHHHHHH----HhhhhhhHHHHHHhh-----------------hcCcccCCccccccc--cc-CccHHHHHHHHH-----
Confidence 0000000 000 00111111111 000000000000000 01 122332222222
Q ss_pred HhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccc
Q psy8697 275 QQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMK 352 (508)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~ 352 (508)
........+....|.++++ .|++..+ ............+.+.+.|.++||+|++...+.+..+..+..-...
T Consensus 275 ~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l------ 348 (459)
T KOG4686|consen 275 LYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGL------ 348 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhH------
Confidence 2222356777788888887 8886655 3555666667778889999999999999888776655544433332
Q ss_pred cccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhh
Q psy8697 353 STFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMIS 432 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (508)
++.. .++|..+.++ +..+.. .....|.+++
T Consensus 349 -----------~Ft~-----------------------------------lsPy~~m~~l---GLsysl-lAcslWP~va 378 (459)
T KOG4686|consen 349 -----------FFTF-----------------------------------LSPYTSMTFL---GLSYSL-LACSLWPCVA 378 (459)
T ss_pred -----------Hhhh-----------------------------------ccHHHHHHHH---hhhHHH-HHHHHhhhhh
Confidence 2222 1444443333 332222 1222467788
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c-cc---hhHHHHHHHHHHhhheeEEEec
Q psy8697 433 ELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S-VI---GTFNVFGLVSFTLVGFVYFYLP 493 (508)
Q Consensus 433 e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~---~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
.+.|++..|+++|.++...++|-++.|.+.|.+.|. | +. ..|.+.+.+++....+.+..-+
T Consensus 379 ~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 379 SLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred hhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence 889999999999999999999999999999999998 3 32 2344455555555555444333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-16 Score=158.90 Aligned_cols=328 Identities=13% Similarity=0.087 Sum_probs=201.7
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhc----ccchhH-HHHHHHHHHHHHHHHHhcCCc----chHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY----IGRKWS-LILVCVPYIISSLLTILADPG----NIEL 111 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr----~Grk~~-l~~~~~~~~i~~~l~~~~~~~----~~~~ 111 (508)
..++.+..+ +++...|.+..+.-+--++..|+.|.++|| +||||. ++++.+..+++.++.-..++. ....
T Consensus 33 ~~fyt~~~G-l~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y 111 (460)
T PRK11462 33 MFFYTDIFG-IPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY 111 (460)
T ss_pred HHHHHHhhC-CCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 344445555 999999999999999999999999999995 798765 455777888877766555531 1345
Q ss_pred HHHHHHHhhcchhhHHH-HHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHH
Q psy8697 112 LYLSKICAGIGGGMSTV-AMVYVSEICH-ENFRPAILCLNSVFISCGILLTTILNLYL-----------DWRSLSYCFLA 178 (508)
Q Consensus 112 l~~~r~l~G~~~g~~~~-~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----------~wr~~f~~~~~ 178 (508)
+.+.-++..++...... -.++.+|..+ ++||++..++...+..+|..+++.+...+ +|+....+.++
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i 191 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV 191 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 66667777888888888 8899999997 78899999999999998887776664332 57877777777
Q ss_pred HHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcC
Q psy8697 179 LVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTT 258 (508)
Q Consensus 179 ~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (508)
+.+++.++.....+|.++. ++ ++.+.+...+..++|
T Consensus 192 i~~i~~~i~~~~~kE~~~~--~~------------------------------------------~~~~~~~~l~~~~~N 227 (460)
T PRK11462 192 VAFMMLAFCFFTTKERVEA--PP------------------------------------------TTTSMREDLRDIWQN 227 (460)
T ss_pred HHHHHHHHHHhcceeccCC--Cc------------------------------------------cCCCHHHHHHHHhCC
Confidence 7776555555555654210 00 000011122226666
Q ss_pred cccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHH
Q psy8697 259 RECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGL 338 (508)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 338 (508)
+.++. .....++....... ......|...+. .|.+...........+..+++.++++++.||+++|+....+..+.
T Consensus 228 k~~~~-l~~~~~~~~~~~~~-~~~~~~y~~~y~--~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~ 303 (460)
T PRK11462 228 DQWRI-VGLLTIFNILAVCV-RGGAMMYYVTWI--LGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL 303 (460)
T ss_pred hHHHH-HHHHHHHHHHHHHH-HHhHhhhhhhhh--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 65443 22222222211111 122222333332 222222234455667778889999999999999998776554444
Q ss_pred HHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHH
Q psy8697 339 GVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFF 418 (508)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (508)
.+..+.+. +... ...+...+...+.+.+
T Consensus 304 ~~~~~~~~-----------------~~~~-----------------------------------~~~~~~~~~~~l~g~~ 331 (460)
T PRK11462 304 AVISLAMF-----------------FVPM-----------------------------------QASITMFVFIFVIGVL 331 (460)
T ss_pred HHHHHHHH-----------------Hhch-----------------------------------hHHHHHHHHHHHHHHH
Confidence 33333332 1110 0111222222222222
Q ss_pred HhhcchhhhHhhhhccCc-------ccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-cc
Q psy8697 419 SAVGVIVIPWTMISELLP-------SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SV 470 (508)
Q Consensus 419 ~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~ 470 (508)
. ....++.+++..|... .+..|...+..+....+|..+++.+.|.+.+. |+
T Consensus 332 ~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 332 H-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred H-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2 3334555677777655 33345666777789999999999999998876 54
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=152.34 Aligned_cols=328 Identities=16% Similarity=0.156 Sum_probs=228.1
Q ss_pred hhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhc----ccchh-HHHHHHHHHHHHHHHHHhcCC----cchHHHH
Q psy8697 43 YLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY----IGRKW-SLILVCVPYIISSLLTILADP----GNIELLY 113 (508)
Q Consensus 43 ~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr----~Grk~-~l~~~~~~~~i~~~l~~~~~~----~~~~~l~ 113 (508)
+..+..+ +++...|.+..+.-+--++.-|+.|.+.|| +||+| .++.+.+..++...++-.+++ ......+
T Consensus 38 fYTdv~G-is~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~ 116 (467)
T COG2211 38 FYTDVFG-LSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYAL 116 (467)
T ss_pred HHhcccC-CcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHH
Confidence 3444445 999999999999999999999999999995 88865 566687889999988888874 1466677
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHH
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICH-ENFRPAILCLNSVFISCGILLTTILNLYL-----------DWRSLSYCFLALV 180 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----------~wr~~f~~~~~~~ 180 (508)
+..++.+++...... -.++.+|+++ ++||.+..++-+.+.++|.++...+...+ ||+....+.+++.
T Consensus 117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~ 196 (467)
T COG2211 117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIG 196 (467)
T ss_pred HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence 888899999888888 9999999985 68899999999999999977766555444 7999999988888
Q ss_pred HHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcc
Q psy8697 181 LISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRE 260 (508)
Q Consensus 181 ~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (508)
.+..+..++..+|.+.. . ++. +.+.+.+.+..+...++|++
T Consensus 197 ~i~~l~~~~~v~ER~~~---~-------~~~-----------------------------~~~~~~~~~~~~~~~~~Nrp 237 (467)
T COG2211 197 VILLLFCFFNVKERVVE---T-------QPT-----------------------------KTGVKLKLKDSFLLIFKNRP 237 (467)
T ss_pred HHHHHHHHHHhhcccCc---c-------ccC-----------------------------cccccccHHHHHHHHHccch
Confidence 88666667777775420 0 000 00011222222222677877
Q ss_pred cchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHH
Q psy8697 261 CYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGL 338 (508)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 338 (508)
.+...+..++.....+ .-.....++.+. .|.+... ...........+++.++..++.+|+|+|++...+.++.
T Consensus 238 ~~~~l~~~l~~~~~~~-----i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~ 312 (467)
T COG2211 238 LLLLLLMNLLLFIAFN-----IRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLL 312 (467)
T ss_pred HHHHHHHHHHHHHHHH-----HHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHH
Confidence 5554443333333222 222222233222 2222222 34555556666777899999999999999999999999
Q ss_pred HHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHH
Q psy8697 339 GVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFF 418 (508)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (508)
.++.+++. +... .+.+..++..++...+
T Consensus 313 ~i~~~~~~-----------------f~~~-----------------------------------~~~~l~~~~~~i~~~g 340 (467)
T COG2211 313 AVGYLLLY-----------------FTPA-----------------------------------GSVVLIVVALIIAGVG 340 (467)
T ss_pred HHHHHHHH-----------------hhcC-----------------------------------cchHHHHHHHHHHHHH
Confidence 99998888 5221 1233333333333333
Q ss_pred HhhcchhhhHhhhhccCc-------ccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 419 SAVGVIVIPWTMISELLP-------SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 419 ~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
.....+++|++++|... .+..|...|....+.-+|.+++..+.|++.+.
T Consensus 341 -~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 341 -TGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred -hhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456888899998753 34558899999999999999999999999876
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-19 Score=184.49 Aligned_cols=400 Identities=15% Similarity=0.107 Sum_probs=3.0
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC-----------C
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD-----------P 106 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~-----------~ 106 (508)
...+..+++.|+ ++.++.|++.+.+-++..+..++..++.+|-.|-|.+-.|.+++++|++++++-+ +
T Consensus 23 ~~~lttiErRF~-l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~ 101 (539)
T PF03137_consen 23 NSSLTTIERRFG-LSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEAS 101 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccc
Confidence 445889999999 9999999999999999999999999999998888999999999999999887521 0
Q ss_pred --------------------------------c-----chHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHH
Q psy8697 107 --------------------------------G-----NIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCL 148 (508)
Q Consensus 107 --------------------------------~-----~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~ 148 (508)
. .+..++++.++.|+|....++ +.+|+-|..++++-+..+|+
T Consensus 102 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi 181 (539)
T PF03137_consen 102 NSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGI 181 (539)
T ss_dssp --------------------------------------------------SSS---------------------------
T ss_pred ccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhh
Confidence 0 257788999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh--------------------------hhHHHHHHHHHHHHHHHHhhhhcCCCC-chhhhhc
Q psy8697 149 NSVFISCGILLTTILNLYL--------------------------DWRSLSYCFLALVLISGLVLICFAPES-PHWLINM 201 (508)
Q Consensus 149 ~~~~~~lG~~~g~~l~~~l--------------------------~wr~~f~~~~~~~~~~~~~~~~~l~es-p~~~~~~ 201 (508)
+.....+|.++|.++++.+ .|..-|++.+.+.++.++. ++++|+. |+. +
T Consensus 182 ~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip-l~~FPk~lp~~---~ 257 (539)
T PF03137_consen 182 LYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP-LFFFPKKLPGT---S 257 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHcCCccCCCc---c
Confidence 9999999999999998866 2666777777777773443 4444543 221 0
Q ss_pred ccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhh----hhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhh
Q psy8697 202 DRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTR----YDETRNKKALWRQILTTRECYKPLILLVILFTLQQF 277 (508)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (508)
+..++.+...++.+ +...++.+++++. ...+.-.+..++ +++||. .....+......
T Consensus 258 -------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~df~~~l~~-Ll~Np~-----f~~~~la~~~~~ 318 (539)
T PF03137_consen 258 -------ERQEEKESSERKEE------DSDKDSFKDPKSKKSFGKSIKDFPKALKR-LLTNPV-----FMCLILAGVFES 318 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------cccchhhhhhcchh------hhhhhcccccccccchhhhhhhHHHHHHH-HhcChH-----HHHHHHHHHHHH
Confidence 00000000000000 0000000000000 011122233444 777774 344444444455
Q ss_pred cccchhhhcHHHHHHH-hCCcchhh--HHHHHHHHHHHHHHHHHHHhhcccC--CeeehhhhhhHHHHHHHHHhhccccc
Q psy8697 278 TGVYPVIFYAMQLFKE-VGTEIDES--HALVFLGIIRFGMSVVTTVLARGFG--RKQLLIVSAAGLGVSSILLSSNLLMK 352 (508)
Q Consensus 278 ~~~~~~~~~~~~~~~~-~g~~~~~~--~~~~~~~~~~~~~~~~~~~l~dr~g--rr~~l~~~~~~~~~~~~~l~~~~~~~ 352 (508)
....++..|.|.|++. .+.+...+ ....+.-.+.++|.+++|++.+|++ .|+.+....+...++.+... .
T Consensus 319 ~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~-----~ 393 (539)
T PF03137_consen 319 FIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYS-----P 393 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHH-----H
Confidence 5577889999999988 44433222 2222222356688899999999874 45555555555544444422 1
Q ss_pred cccccccccCccccccCCc--ccccccccccccCCCC-C---CCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhh
Q psy8697 353 STFTNCAIQSNEYLVTPNE--SMRLDHSTWHNEMQVP-P---SAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVI 426 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (508)
..+.+|+.+...-...+.+ ...-...+-...|+.. . ..-....|..+ +.......++.+++..+.......|.
T Consensus 394 ~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~-C~~~~~~Fl~~~~~~~~~~~~~~~p~ 472 (539)
T PF03137_consen 394 LFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSD-CCNKLIPFLILLFILSFFTFMSQVPS 472 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcc-cccccHHHHHHHHHHHHHHHhcccch
Confidence 3456799887664443321 0000000000000000 0 00012333333 23333333333333334444444444
Q ss_pred hHhhhhccCcccchhhHHHHHHHHHHH-HHHHHHHHhHHHhhh
Q psy8697 427 PWTMISELLPSYARGVCSGLMISYGYV-CMFFMVKAFPFAIHS 468 (508)
Q Consensus 427 ~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~i~~~~~g~l~~~ 468 (508)
. ..+-..+|+++|+.|.|+...+.++ |.+-+|.++|.+.|.
T Consensus 473 ~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 473 T-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -------------------------------------------
T ss_pred h-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 4 6667889999999999999987555 667799999999987
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=162.40 Aligned_cols=424 Identities=14% Similarity=0.100 Sum_probs=259.6
Q ss_pred cccchhhHHHHHhhhh-hhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHH
Q psy8697 13 LRKKSCTYVRYLHMYT-QRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVC 91 (508)
Q Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~ 91 (508)
......+++.+..... .+... .++...+..+.+.|+ ++.++.|++.+.+=++..+...+..+.+-|..|-+.+-.|.
T Consensus 92 ~~~~k~fl~~l~~~~~~q~l~~-~y~~s~IttiErRF~-i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~ 169 (735)
T KOG3626|consen 92 FANIKMFLVLLSLAAFAQGLYV-GYFNSVITTIERRFK-ISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGL 169 (735)
T ss_pred ccCcchHHHHHHHHHHHHHhhh-hhhhhhhhhhhhhcC-CCCCcceeEeeecccchhhhhHhHHHhccccCccceeeech
Confidence 3333444444443333 24443 334556788999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-------------------C---------------------------c----chHHHHHHHHHhhc
Q psy8697 92 VPYIISSLLTILAD-------------------P---------------------------G----NIELLYLSKICAGI 121 (508)
Q Consensus 92 ~~~~i~~~l~~~~~-------------------~---------------------------~----~~~~l~~~r~l~G~ 121 (508)
++++++++++++-+ + . .+..++++.++.|+
T Consensus 170 ~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI 249 (735)
T KOG3626|consen 170 VLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI 249 (735)
T ss_pred hHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc
Confidence 99999999998742 0 0 13367889999999
Q ss_pred chhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----------------------hhHHHHHHHH
Q psy8697 122 GGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----------------------DWRSLSYCFL 177 (508)
Q Consensus 122 ~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----------------------~wr~~f~~~~ 177 (508)
|....++ +.+|+.|...+++-+..+|+......+|.++|.++++++ .|+.-|++.+
T Consensus 250 G~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g 329 (735)
T KOG3626|consen 250 GATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICG 329 (735)
T ss_pred CCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999987 5888899999
Q ss_pred HHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhc
Q psy8697 178 ALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILT 257 (508)
Q Consensus 178 ~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
.+.++ ..+.++++|...+. . ++. ...+..+..+.+.+.. .++....++-++-++..++ +++
T Consensus 330 ~~~~~-~a~p~f~fPk~lp~---~-------~~~-~~~~~~~~~k~~~~~~------~~~~~~~~~ikdfp~s~~~-ll~ 390 (735)
T KOG3626|consen 330 ALLLF-SAVPLFFFPKELPK---S-------QKR-KRARDLHVLKTESGGA------KSDKTFGKKIKDFPKSIKR-LLS 390 (735)
T ss_pred HHHHH-HHHHHHhCcccCcc---c-------ccc-chhhhhcccccccccc------cCCcchhhhHHHHHHHHHH-Hhc
Confidence 99988 44555555654321 0 000 0000000000000000 0000000011223345556 888
Q ss_pred CcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchhh-HHH-HHHHHHHHHHHHHHHHhhcccC--Ceeehh
Q psy8697 258 TRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDES-HAL-VFLGIIRFGMSVVTTVLARGFG--RKQLLI 332 (508)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~-~~~~~~~~~~~~~~~~l~dr~g--rr~~l~ 332 (508)
||. .....+....+...+.++..|+|.|++. .|.+...+ ... .+.-.+..+|.+++|+++.|+. .|....
T Consensus 391 N~i-----f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~ 465 (735)
T KOG3626|consen 391 NPI-----FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAK 465 (735)
T ss_pred Cch-----HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHH
Confidence 874 4444555555556688899999999988 55543332 222 2222345678889999999874 344444
Q ss_pred hhhhHHHHHHHHHhhccccccccccccccCccccccCCcc--cccc----------------------------------
Q psy8697 333 VSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNES--MRLD---------------------------------- 376 (508)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------------------------------- 376 (508)
+.++...++++... ...|.+|+...+.-...+.+. -...
T Consensus 466 ~~~~~~~l~l~~~~-----~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpC 540 (735)
T KOG3626|consen 466 FVIVCSVLSLLFYS-----LLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPC 540 (735)
T ss_pred HHHHHHHHHHHHHH-----HHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChh
Confidence 44444444443322 233566776665432221110 0000
Q ss_pred -------------cccccccCCCCCC--CCCCCcc--ccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccc
Q psy8697 377 -------------HSTWHNEMQVPPS--AFNTSSC--VDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYA 439 (508)
Q Consensus 377 -------------~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 439 (508)
+..|.++.=++.+ .+.++.. =+.++.......++.+++..+..+.+..|. ...+-..+|+|.
T Consensus 541 hAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~-~~i~LR~V~~e~ 619 (735)
T KOG3626|consen 541 HAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPG-MLIVLRCVPPEE 619 (735)
T ss_pred hhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcc-eEEEEEccCchh
Confidence 1111111111100 0000000 001111222233333333333334443444 477788899999
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHhHHHhhh
Q psy8697 440 RGVCSGLMISYGYV-CMFFMVKAFPFAIHS 468 (508)
Q Consensus 440 r~~~~g~~~~~~~~-g~~i~~~~~g~l~~~ 468 (508)
|..++|+..++.++ |.+-+|.++|++.|.
T Consensus 620 ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 620 KSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred chhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 99999999888655 666689999999874
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-16 Score=151.77 Aligned_cols=394 Identities=12% Similarity=0.031 Sum_probs=254.4
Q ss_pred ccccchhhHHHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHH
Q psy8697 12 CLRKKSCTYVRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVC 91 (508)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~ 91 (508)
+.|+|...++.-+....++.. .+.|.+...+.+..++ +....-|+..+|++.+....+++-|+.||+|-|...+++.
T Consensus 40 y~rRW~vLl~~slL~~SN~~q-WI~ya~i~n~~~~~Yg--s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 40 YPRRWVVLLAFSLLNFSNGMQ-WIQYAPINNYVNSFYG--SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred chhHhHHHHHHHHHHhcCcch-heeehhHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 445544444444444333332 5557887777777777 6677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCc----chH--HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy8697 92 VPYIISSLLTILADPG----NIE--LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILN 164 (508)
Q Consensus 92 ~~~~i~~~l~~~~~~~----~~~--~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~ 164 (508)
.+..+|..+-..+... .++ ....+..+.+.+.-.... -.....-|++++||..+..+-..+..+|.++|.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 9999999988876542 244 666788888888777777 667778899999999999999988889999998888
Q ss_pred Hhh----------hhHH--HHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHH
Q psy8697 165 LYL----------DWRS--LSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEW 232 (508)
Q Consensus 165 ~~l----------~wr~--~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (508)
..+ .|.. .|+....+..+..++..+..+|.|+..... .+.. .
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~-------s~~~--~----------------- 250 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSA-------SQAA--L----------------- 250 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch-------hHhh--h-----------------
Confidence 777 4654 455555555553444445555544321111 0000 0
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcc-hhhHHHHHHHHHH
Q psy8697 233 RVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEI-DESHALVFLGIIR 311 (508)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~ 311 (508)
.+..-.++..+ .++++.+.. ..+......+.++.....+...+...|++. ..........+.+
T Consensus 251 ----------~~~~f~~si~~-~~~n~~F~i-----l~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~G 314 (480)
T KOG2563|consen 251 ----------QDASFPKSIKS-CFKNRQFII-----LAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAG 314 (480)
T ss_pred ----------hcCcHHHHHHH-HHcCccHHH-----HHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHH
Confidence 01122344445 788875332 222222223334444444443334455643 3357777788889
Q ss_pred HHHHHHHHHhhcccCCee-ehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCC
Q psy8697 312 FGMSVVTTVLARGFGRKQ-LLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSA 390 (508)
Q Consensus 312 ~~~~~~~~~l~dr~grr~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (508)
++++++.|.+.||.++-+ ..++......++...+. .+...+.
T Consensus 315 mlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~-----------------~~t~~~~-------------------- 357 (480)
T KOG2563|consen 315 MLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLL-----------------TCTLFLG-------------------- 357 (480)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-----------------HhhccCC--------------------
Confidence 999999999999987644 33444444444423333 2222110
Q ss_pred CCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c
Q psy8697 391 FNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S 469 (508)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g 469 (508)
..++... .....+++..+..|+-.-+..|..-|..-++..|+.+..+++-+++-..+.+...+. +
T Consensus 358 -------------~~viv~~-t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 358 -------------DSVIVFT-TCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred -------------ceEehhh-hHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence 2233333 333344556667788878888886556668999999999999999999998888877 4
Q ss_pred ----cchhHHHHHHHHHHhhheeEEEeccCCCCChH
Q psy8697 470 ----VIGTFNVFGLVSFTLVGFVYFYLPETKGKTFV 501 (508)
Q Consensus 470 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (508)
+...-+.....+++..++..++.|+.++++.|
T Consensus 424 ~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e 459 (480)
T KOG2563|consen 424 PPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE 459 (480)
T ss_pred CCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence 33334455555566666666666655544443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-15 Score=146.86 Aligned_cols=271 Identities=13% Similarity=0.066 Sum_probs=180.6
Q ss_pred hcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh--------------
Q psy8697 103 LADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-------------- 167 (508)
Q Consensus 103 ~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-------------- 167 (508)
...+ |+.++++-++.|.|.+...+ ...|+++..+++++.+.+++.+...++|..++|.++..+
T Consensus 6 ~~~~--~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~ 83 (310)
T TIGR01272 6 SQRY--YVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVAT 83 (310)
T ss_pred HhhH--HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 3456 99999999999999999999 999999999999999999999999999999999999843
Q ss_pred ------hhHHHHHHHHHHHHHHHHhhh-hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhh
Q psy8697 168 ------DWRSLSYCFLALVLISGLVLI-CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRT 240 (508)
Q Consensus 168 ------~wr~~f~~~~~~~~~~~~~~~-~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (508)
+||++|++.+.+.++..++.. .-+||..+ + ++ ++.. .+
T Consensus 84 ~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~-------~~-~~~~-----------------------~~ 128 (310)
T TIGR01272 84 ANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----A-------DV-ARVS-----------------------SG 128 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----c-------cc-cccc-----------------------cc
Confidence 489999977666555343332 23454311 0 00 0000 00
Q ss_pred hhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHh---CCcchh-hHHHHHHHHHHHHHHH
Q psy8697 241 RYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEV---GTEIDE-SHALVFLGIIRFGMSV 316 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~-~~~~~~~~~~~~~~~~ 316 (508)
+..+++ + .+++|. .. ...+..+...........|.+.|+++. |++.+. .........+..+|++
T Consensus 129 ---~~~~~~---~-~~~~~~----~~-l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~ 196 (310)
T TIGR01272 129 ---DTTQKT---S-AFQFTH----LV-LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRF 196 (310)
T ss_pred ---cccchh---h-HHhhHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000 1 233332 12 222333333333556778899999753 555444 4667777788899999
Q ss_pred HHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCcc
Q psy8697 317 VTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSC 396 (508)
Q Consensus 317 ~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
+++++.||+|+|+.+..+..+..++.++.. . .
T Consensus 197 ~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~-----------------~-~------------------------------ 228 (310)
T TIGR01272 197 IGSAVMPMISQGRYLAFNAFLAVLLSIGAA-----------------L-T------------------------------ 228 (310)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-----------------H-c------------------------------
Confidence 999999999999988877777766664444 2 0
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHH
Q psy8697 397 VDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFN 475 (508)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~ 475 (508)
..........+.+.+ .....|...+...+..|++ .+++.++. ..+.+|+.++|.+.|.+.|. |....++
T Consensus 229 -------~~~~~~~~~~l~g~~-~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 229 -------HGYVAMWFVLALGLF-NSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred -------CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 112222233333333 3345566667888877764 45667764 67889999999999999998 8877776
Q ss_pred HHHHH
Q psy8697 476 VFGLV 480 (508)
Q Consensus 476 ~~~~~ 480 (508)
+...+
T Consensus 299 v~~~~ 303 (310)
T TIGR01272 299 LPVPC 303 (310)
T ss_pred HHHHH
Confidence 54443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-14 Score=139.10 Aligned_cols=386 Identities=15% Similarity=0.096 Sum_probs=236.2
Q ss_pred ccCCccchhHHHHHHHHHhhhhhchhhhhhcc-cchhHHHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHhhcchhhH
Q psy8697 50 VMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI-GRKWSLILVCVPYIISSLLTILAD--PGNIELLYLSKICAGIGGGMS 126 (508)
Q Consensus 50 ~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~-Grk~~l~~~~~~~~i~~~l~~~~~--~~~~~~l~~~r~l~G~~~g~~ 126 (508)
+.++++..-+.++|..---+..+++|+++||+ |+|+++..|.+++++|.++.+.+. . ...+.++-.+.++|.|..
T Consensus 57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~--~~gl~i~L~~I~iG~Gl~ 134 (498)
T COG3104 57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG--PGGLYIGLALIIVGTGLF 134 (498)
T ss_pred CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc--ccHHHHHHHHHHhccccc
Confidence 37788877777777777777889999999996 999999999999999999999985 6 889999999999999999
Q ss_pred HH-HHHHhhhccCCCC--chhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhh
Q psy8697 127 TV-AMVYVSEICHENF--RPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPESPHWLI 199 (508)
Q Consensus 127 ~~-~~~~i~e~~~~~~--rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~ 199 (508)
-+ ..+++.|.+|+++ |-...+++..+.++|.+++|++.+++ ||...|...++-..+ .++.....+..-.+..
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~-gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMII-GLVIFLLGRRHVKGIG 213 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH-HHHHHHHccchhcCCC
Confidence 99 9999999998653 67778889999999999999999998 899999998888887 5555544442211111
Q ss_pred hcccccchhhhHHHHHHH--------HHHH---hCChhhhHHHHHH---------HHHhhhhhhhhhhhHHHHHHHhcCc
Q psy8697 200 NMDRTANVNKRMAKAEKS--------LKFL---NRNPEIFEKEWRV---------LCQVRTRYDETRNKKALWRQILTTR 259 (508)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (508)
.++++.. .+..+.... .... ..+.+........ ..+.-...+..++++..+.
T Consensus 214 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~------ 285 (498)
T COG3104 214 GVPDPNP--LSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLA------ 285 (498)
T ss_pred CCCCccc--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHH------
Confidence 0000000 011111100 0000 0000000000000 0000000000011111111
Q ss_pred ccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH--hCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCe--e-----e
Q psy8697 260 ECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE--VGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRK--Q-----L 330 (508)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr--~-----~ 330 (508)
.-++.+...+++..+-...+.+..|.....+. .|++........+-.+.-++.+++..++..|.+++ . -
T Consensus 286 --~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~K 363 (498)
T COG3104 286 --AIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIK 363 (498)
T ss_pred --HHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchH
Confidence 01122222233333333345555555555443 33445555666777777777777777776664333 2 2
Q ss_pred hhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHH
Q psy8697 331 LIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLL 410 (508)
Q Consensus 331 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (508)
..++..+++.+++++. ....... ......+...++
T Consensus 364 FalGl~l~g~~fl~l~-----------------~~~~~~~----------------------------~~~~~~s~~~li 398 (498)
T COG3104 364 FALGLILAGLGFLILL-----------------LAGIWFG----------------------------GPSGLVSVWWLV 398 (498)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHhhc----------------------------CCCCCcCHHHHH
Confidence 3456666777776666 3211100 000123444455
Q ss_pred HHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHH------Hhhh-ccchhHHHHHHHHHH
Q psy8697 411 FILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPF------AIHS-SVIGTFNVFGLVSFT 483 (508)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~------l~~~-g~~~~~~~~~~~~~~ 483 (508)
....+..+......|+...++..+.|+...+.++++.......++.++..+.+. ..+. .....|+.++....+
T Consensus 399 l~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~ 478 (498)
T COG3104 399 LSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIV 478 (498)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHH
Confidence 555566667788889999999999999999999998888888888888777662 2222 555667777777666
Q ss_pred hhheeEEEec
Q psy8697 484 LVGFVYFYLP 493 (508)
Q Consensus 484 ~~~~~~~~~~ 493 (508)
..+......|
T Consensus 479 ~~~~~~~~~~ 488 (498)
T COG3104 479 IGILLLLLSP 488 (498)
T ss_pred HHHHHHHhhH
Confidence 6555444333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=148.62 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=131.5
Q ss_pred HHhhhc-ccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHH---HHhcCCcchHHHHHH
Q psy8697 40 YLKYLT-RHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLL---TILADPGNIELLYLS 115 (508)
Q Consensus 40 ~~~~i~-~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l---~~~~~~~~~~~l~~~ 115 (508)
.+|.+. ++.+ .+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++ ...++++
T Consensus 272 ~~p~~l~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 348 (490)
T PRK10642 272 YMPSYLSHNLH-YSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV--IGLIFAG 348 (490)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHH
Confidence 355544 4445 77777778888889999999999999999999999988877654443322 223445 7788889
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhh
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLIC 189 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~ 189 (508)
|++.|++.+.... ...++.|.+|++.|++++++......++..++|.+.+++ +|+.+++...+++++ .++..+
T Consensus 349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i-~~~~~~ 427 (490)
T PRK10642 349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVI-GLITGV 427 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH-HHHHHH
Confidence 9999998887777 888899999999999999974333445556777777665 478777777766666 555566
Q ss_pred cCCCCchhhhhcccccchhhhHHHHHHHHHHHhC
Q psy8697 190 FAPESPHWLINMDRTANVNKRMAKAEKSLKFLNR 223 (508)
Q Consensus 190 ~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (508)
++||+|+|+.++. .+.+++.+|+++.++++++
T Consensus 428 ~~pes~~~~~~~~--~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 428 TMKETANRPLKGA--TPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HhccccCCCCCCc--cccccchhhHHHHhhcccc
Confidence 7899999876431 1223778888998888874
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-14 Score=120.56 Aligned_cols=134 Identities=24% Similarity=0.318 Sum_probs=120.6
Q ss_pred HHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhcc
Q psy8697 59 TTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEIC 137 (508)
Q Consensus 59 ~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~ 137 (508)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.++....++ ++.+.+.+++.|++.+...+ ...++.|..
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN--ITVLIIARFLQGFGAAFALVAGAALIADIY 80 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 345667888999999999999999999999999999999999999999 99999999999999999999 999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy8697 138 HENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPES 194 (508)
Q Consensus 138 ~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~es 194 (508)
|+++|++..++.+....+|..+++.+.+.+ +|++.+++.++..++..+...+..||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999888 899999998888887566666666663
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=129.46 Aligned_cols=335 Identities=19% Similarity=0.198 Sum_probs=212.3
Q ss_pred HHhhhcccccccCCccchhHHHHH----HHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFV----IITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~----~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
..+...+.++.-.....+...... .+...+.++..|.++||+|||..+.+......+..+...+.. +|.++
T Consensus 44 ~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---~~~~~-- 118 (463)
T KOG2816|consen 44 VILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---YWFFL-- 118 (463)
T ss_pred hhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---HHHhh--
Confidence 344444444433333444444444 688889999999999999999999999999888887777765 34444
Q ss_pred HHHhhcchhh--HHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 116 KICAGIGGGM--STV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 116 r~l~G~~~g~--~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
+.|+..+. ... ..++++|...+++|....++.+..+..+..++|.+++.. +.-.+|.+..+..++..+..+
T Consensus 119 --~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~ 196 (463)
T KOG2816|consen 119 --LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYML 196 (463)
T ss_pred --hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh
Confidence 55554333 344 889999999999999999999999999999999999988 777889998888888777788
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILL 268 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (508)
+++||+-.. + ++.+ ...+...... .........++ ..+..+..+..+..
T Consensus 197 ~~l~Esl~~---~-------~~~~---~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~r~~l~l 245 (463)
T KOG2816|consen 197 LFLPESLQE---K-------ERSD---ATLRELTPGS-----------------LDSSHVADAFQ-SLTKVGPDRLLLLL 245 (463)
T ss_pred hccccccCc---c-------cccc---ccccccCCCc-----------------ccchhhhhhhh-hhcccCCCccchHH
Confidence 899998321 1 0000 0000000000 00000111111 11111112212222
Q ss_pred HHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHH-HhhcccCCeeehhhhhhHHHHHHHHH
Q psy8697 269 VILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTT-VLARGFGRKQLLIVSAAGLGVSSILL 345 (508)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~-~l~dr~grr~~l~~~~~~~~~~~~~l 345 (508)
.....+..........-..+.+++. .+++.+. .......++...++.++.. .+...+|.|+....|.....+.....
T Consensus 246 ~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~ 325 (463)
T KOG2816|consen 246 LLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLF 325 (463)
T ss_pred HHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHH
Confidence 2222211111111111011222222 4555444 3566677777778777766 77778898888888888888888888
Q ss_pred hhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchh
Q psy8697 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIV 425 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (508)
+ +. +..|....... ...++....|
T Consensus 326 a-----------------f~-------------------------------------~~~w~~~~~~v--~~~~~~~~~p 349 (463)
T KOG2816|consen 326 A-----------------FA-------------------------------------TETWMMFAAGV--VVALAGIVFP 349 (463)
T ss_pred H-----------------Hh-------------------------------------ccchhhhHHHH--HHHhhcchhH
Confidence 8 41 13333322222 2223344556
Q ss_pred hhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 426 IPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 426 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
...+..+...+++.+|++.++......+...++|.+.+.+...
T Consensus 350 a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 350 AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 6678999999999999999999999999999999999988654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-11 Score=116.85 Aligned_cols=325 Identities=15% Similarity=0.100 Sum_probs=204.1
Q ss_pred ccccccCCccchhHHHHHHHHHhhhhhchhhhhhccc-----chhHHHH-HHHHHHHHHHHHHhc-----C-------Cc
Q psy8697 46 RHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIG-----RKWSLIL-VCVPYIISSLLTILA-----D-------PG 107 (508)
Q Consensus 46 ~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~G-----rk~~l~~-~~~~~~i~~~l~~~~-----~-------~~ 107 (508)
.|.+ ++..-.+.+.+.+.+... ..+.+|+.+|+.+ ||..+++ |..+...+..+..++ . +.
T Consensus 8 vEL~-vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 8 VELG-VPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHhc-cHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 4444 677777888888877765 5888999999998 8866554 666666655555442 2 10
Q ss_pred --chHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhH--HHHHHHH
Q psy8697 108 --NIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWR--SLSYCFL 177 (508)
Q Consensus 108 --~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr--~~f~~~~ 177 (508)
......+.-.+.|+|.+...+ ..++++|..|+++|+++.++...+.-+|.+++..+.+.+ .-| .++...+
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a 165 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA 165 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence 112345566788999999999 999999999999999999999999999999999998877 222 2333333
Q ss_pred HHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhc
Q psy8697 178 ALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILT 257 (508)
Q Consensus 178 ~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
++.++..++..+ -.|.+.. +.. ..+.+++...+..+++...
T Consensus 166 ~i~~~l~~ia~w-g~E~r~~------------~~~--------------------------~~~~~~~~~f~~a~~~~~~ 206 (403)
T PF03209_consen 166 LIALLLNLIALW-GQEPRRS------------RRA--------------------------AAAERPRPPFREAWRQVWA 206 (403)
T ss_pred HHHHHHHHHHHH-hcccCCc------------ccc--------------------------cCCCCCCccHHHHHHHHHh
Confidence 333332222222 2332110 000 0001122333344444666
Q ss_pred CcccchhHHHHHHHHHHHhhcccchhhhcHHHHH-HHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhc-ccCCeeehhhh
Q psy8697 258 TRECYKPLILLVILFTLQQFTGVYPVIFYAMQLF-KEVGTEIDE-SHALVFLGIIRFGMSVVTTVLAR-GFGRKQLLIVS 334 (508)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~d-r~grr~~l~~~ 334 (508)
+|+.++.+ ..+++..+. ++.-..-+-.|- +-.|++..+ ...+...+.+.++|....+++.. |.++++....+
T Consensus 207 ~~~a~~f~-~fl~l~t~a----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G 281 (403)
T PF03209_consen 207 SPQARRFF-VFLFLGTLA----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALG 281 (403)
T ss_pred CCChhHHH-HHHHHHHHH----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 77655533 333322221 111111122222 225666655 46777778888888888887665 67777877788
Q ss_pred hhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHH
Q psy8697 335 AAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILL 414 (508)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (508)
.....+++.++. ..... .+.+..-..+++
T Consensus 282 ~~~~~~~f~lii-----------------~a~~~----------------------------------~~~~~~~~~~~l 310 (403)
T PF03209_consen 282 CLLGALAFALII-----------------LAGPL----------------------------------GSPWLFRPGVFL 310 (403)
T ss_pred HHHHHHHHHHHH-----------------HHHhc----------------------------------ccchHHHHHHHH
Confidence 888877777766 32221 134444444554
Q ss_pred HHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 415 YVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
++.+.+... .-..+.+.++.+++..|..+|.-.....++..++..+.|.+.|.
T Consensus 311 ~G~g~G~f~-vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 311 LGLGNGLFT-VGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHHhhhHHH-HHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 22336777888888899999999999999999999999988875
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=125.03 Aligned_cols=354 Identities=14% Similarity=0.189 Sum_probs=208.4
Q ss_pred hHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc---c-chh-HHHHHHHHHHHHHHHHHhcCCc--ch
Q psy8697 37 YLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI---G-RKW-SLILVCVPYIISSLLTILADPG--NI 109 (508)
Q Consensus 37 ~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~---G-rk~-~l~~~~~~~~i~~~l~~~~~~~--~~ 109 (508)
..+..+.+.++++ +++++...+.+...+...+ -+++|.++|.+ | ||| -++++.++..++.+..+..+.. +.
T Consensus 9 ~~~~~~~l~~~l~-ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 9 RLAIYPFLKDDLG-LSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 3455677877777 9999999998888888776 47789999986 3 444 4556777776656655554331 36
Q ss_pred HHHHHHHHHhhcchhhHHH-HHHHhhhccC--CCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q psy8697 110 ELLYLSKICAGIGGGMSTV-AMVYVSEICH--ENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLI 182 (508)
Q Consensus 110 ~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~--~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~ 182 (508)
....+.-++..+|...... +-+.+.|... ++.||...+.......+|.+++..+++.+ ++|..|.+.+++..+
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLL 166 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHH
Confidence 6667777888899999999 9999999883 34478888888888999999999888877 788899988888877
Q ss_pred HHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccc
Q psy8697 183 SGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECY 262 (508)
Q Consensus 183 ~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (508)
..+...+..+|.++ .++ . +... ...+ . ........++..+..|+ .++.+..+
T Consensus 167 ~~~~~~~~~~e~~~--~~~---------~-~~~~----~~~~--~---------~~~~~~~~~~~~~~l~~-~~~~~~i~ 218 (433)
T PF03092_consen 167 MLIVALFLLEERKV--RPA---------D-EVFS----FGKE--E---------VPCLFGSFREQLSELWR-ALQQRAIW 218 (433)
T ss_pred HHHHHHHhhhhccc--ccc---------c-hhhc----cccc--c---------cchhhHHHHHHHHHHHH-HHhhhHHH
Confidence 45555555555211 000 0 0000 0000 0 00000001233445566 77777777
Q ss_pred hhHHHHHHHHHHHhhcccch-hhhcHHHHHHHhCCcchhh---HHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHH
Q psy8697 263 KPLILLVILFTLQQFTGVYP-VIFYAMQLFKEVGTEIDES---HALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGL 338 (508)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 338 (508)
++.+...++....... ..+ ..++...... |.+.+.. ....+..++.++|..+......+..-|+++..+.++.
T Consensus 219 ~~~~~~~~~~~~~~~~-~~a~~fy~~~~~~~--gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~ 295 (433)
T PF03092_consen 219 QPILFFIFFFNLPPSI-SSASSFYFQTDALG--GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVS 295 (433)
T ss_pred HHHHHHHHHHHhccCC-CCccEEEEEecccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7666222222211111 112 1222221111 2222332 3334444555566655555555555566655555444
Q ss_pred HHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHH
Q psy8697 339 GVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFF 418 (508)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (508)
++..+.-. ..... |+.... .+..+..+.--.+....
T Consensus 296 ~~~~l~~~-----------------~lv~~-----------~n~~~G----------------i~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 296 VLASLFDL-----------------LLVTR-----------WNLDLG----------------IPDQWFALGDTILEEVI 331 (433)
T ss_pred HHHhcccE-----------------EEEEE-----------EeeeeC----------------cCCeEEEEEhHHHHHHH
Confidence 43332221 11000 000000 00122222222333444
Q ss_pred HhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 419 SAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 419 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
....+.|.. .+++|+.|+...|+.+++..++.++|..++..+...+.+.
T Consensus 332 ~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~ 380 (433)
T PF03092_consen 332 GMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL 380 (433)
T ss_pred HHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555665 8899999999999999999999999999999998888765
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-11 Score=113.24 Aligned_cols=271 Identities=18% Similarity=0.159 Sum_probs=164.1
Q ss_pred hhHHHHHhhhhh-hhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHH
Q psy8697 18 CTYVRYLHMYTQ-RWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYII 96 (508)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i 96 (508)
..+..+...... ...+++ +-.+-++++ .++.|++.+....+...++..++.|.++||+|||+.-++.+++.++
T Consensus 38 ~yl~vY~La~~aDWLQGpY-----~Y~LY~~yg-~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~ 111 (354)
T PF05631_consen 38 KYLLVYLLAMAADWLQGPY-----LYALYESYG-FSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL 111 (354)
T ss_pred HHHHHHHHHHHHHHhhcch-----hHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 344555544443 334443 434446677 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-H-HHHhhhccCCCCc----hhHHHHHH-HHHHHHHHHHHHHHHhh--
Q psy8697 97 SSLLTILADPGNIELLYLSKICAGIGGGMSTV-A-MVYVSEICHENFR----PAILCLNS-VFISCGILLTTILNLYL-- 167 (508)
Q Consensus 97 ~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~-~~~i~e~~~~~~r----g~~~~~~~-~~~~lG~~~g~~l~~~l-- 167 (508)
+++ +-..++ ++.++++|++.|++.+.... - .-++.|.-..+.+ +...+... ...++-.+.+.+++..+
T Consensus 112 scl-~k~~~~--~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~ 188 (354)
T PF05631_consen 112 SCL-TKHSSN--YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD 188 (354)
T ss_pred HHH-HHhccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 886 445577 99999999999999999877 4 4456665432222 22222222 11222334444444444
Q ss_pred ----hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhh
Q psy8697 168 ----DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYD 243 (508)
Q Consensus 168 ----~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (508)
|-..+|....++.++..+++...-+|.+.... +..+
T Consensus 189 ~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~----------~~~~------------------------------ 228 (354)
T PF05631_consen 189 WFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTS----------SSSS------------------------------ 228 (354)
T ss_pred HhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcc----------cccc------------------------------
Confidence 23678888888887766666666677542100 0000
Q ss_pred hhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy8697 244 ETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLAR 323 (508)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~d 323 (508)
..+..+.-++.+.++|+ .+.............+..+..|.|.+-.+ +-+..-......+.+..++|+.+..++..
T Consensus 229 ~~~~~~~a~~~i~~d~r----il~LG~~qslFE~smy~FVflWtPaL~~~-~~~~P~GlIFssFM~a~MlGS~lf~~l~s 303 (354)
T PF05631_consen 229 LSGSFREAWRAILSDPR----ILLLGLIQSLFEGSMYLFVFLWTPALDPD-DEELPLGLIFSSFMVAMMLGSSLFSRLLS 303 (354)
T ss_pred hHHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHheeeeeceecCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 00111112222455553 44455555555555566667788877521 11223346677777888888888865544
Q ss_pred -ccCCeeehhhhhhHHHHHH
Q psy8697 324 -GFGRKQLLIVSAAGLGVSS 342 (508)
Q Consensus 324 -r~grr~~l~~~~~~~~~~~ 342 (508)
+......+.....+.++++
T Consensus 304 ~~~~~e~~l~~v~~~aa~~l 323 (354)
T PF05631_consen 304 KSLRPESLLRYVFAVAAVSL 323 (354)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 4333333333333333333
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-12 Score=135.58 Aligned_cols=136 Identities=15% Similarity=0.021 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhh
Q psy8697 57 GPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSE 135 (508)
Q Consensus 57 g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e 135 (508)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++ ...+++.+++.|++.+...+ ..++++|
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s--~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS--ESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777999999999999999999999999999999999999999998 88889999999999888888 9999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy8697 136 ICHENFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLVLICFAPESP 195 (508)
Q Consensus 136 ~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~~l~esp 195 (508)
++|.++|++++|+.+....+|.+++|.+++.+ +...+|++.+++.++ ..++..++||+.
T Consensus 676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll-~~ll~~~LPET~ 737 (742)
T TIGR01299 676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALAC-GGLLALKLPDTR 737 (742)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHhCCCCc
Confidence 99999999999999999999999999999866 456677777777777 555555679874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-12 Score=127.44 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=125.1
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-H
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-A 129 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~ 129 (508)
.+..+.|++.++..++..++.+++|++.||+|||+.+..+..+.+++.++.+++++ .+.+++.+++.|++.+...+ .
T Consensus 259 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 259 QGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG--PLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999999999999999999999999 99999999999999988888 8
Q ss_pred HHHhhhccCCCCchhHHHH-HHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy8697 130 MVYVSEICHENFRPAILCL-NSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPESP 195 (508)
Q Consensus 130 ~~~i~e~~~~~~rg~~~~~-~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~esp 195 (508)
..++.|.+|++.|+...+. ++....+|.++++.+.+.+ |||..|.+.+++.++..++.++.+++.|
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 8999999999999887655 6777889999999998887 8999999988888775666666666543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-11 Score=121.78 Aligned_cols=149 Identities=10% Similarity=0.099 Sum_probs=122.3
Q ss_pred HHhh-hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy8697 40 YLKY-LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKIC 118 (508)
Q Consensus 40 ~~~~-i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l 118 (508)
..|. ++++++ .++.+.+++.+...++..++.+++|+++||+|||+.+..+.....+........++ .+.+++.+++
T Consensus 238 ~~p~~l~~~~~-~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~l 314 (393)
T PRK15011 238 NMPLFIINELH-LPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHS--PAILLGLQLL 314 (393)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHH
Confidence 3454 445555 88889999888888888889999999999999999888777666665555556677 8888889999
Q ss_pred hhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCC
Q psy8697 119 AGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPE 193 (508)
Q Consensus 119 ~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~e 193 (508)
.+++.|...+ ...+..|..|+ +|+++.++++....+|..+++.+++.+ +|+..|++.+++.++ .++..++.||
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ 392 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA-TLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHhhcC
Confidence 9999888888 88888998875 599999999988999999999999887 899999988888877 5556666665
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=124.51 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=124.2
Q ss_pred CccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC-Cc-chHHHHHHHHHhhcchhhHHH-H
Q psy8697 53 GSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD-PG-NIELLYLSKICAGIGGGMSTV-A 129 (508)
Q Consensus 53 ~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~-~~-~~~~l~~~r~l~G~~~g~~~~-~ 129 (508)
..+.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +. .++.+++.+++.|++.+...+ .
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999999999999999999998877777643 20 146677889999999999888 8
Q ss_pred HHHhhhccCCCCchhHHHHHH-HHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy8697 130 MVYVSEICHENFRPAILCLNS-VFISCGILLTTILNLYL----------DWRSLSYCFLALVLISGLVLICFAPESP 195 (508)
Q Consensus 130 ~~~i~e~~~~~~rg~~~~~~~-~~~~lG~~~g~~l~~~l----------~wr~~f~~~~~~~~~~~~~~~~~l~esp 195 (508)
..++.|++|+++|+++.++.+ ...++|.++||.+++.+ ||+..|.+.+++.++..++..+++||+.
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999997 67889999999999877 2899999999998887888888888873
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.4e-10 Score=110.78 Aligned_cols=349 Identities=16% Similarity=0.175 Sum_probs=211.9
Q ss_pred HhhhcccccccCCccch-hHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q psy8697 41 LKYLTRHYIVMFGSHFG-PTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g-~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~ 119 (508)
.|++.+.+.+++..|+. -+.-...-.+....++...++|..|.|++++++.+...+...+..+.++ ...+-+..++.
T Consensus 27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s--v~~mq~~q~~y 104 (412)
T PF01770_consen 27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS--VLAMQLMQFFY 104 (412)
T ss_pred hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc--HHHHHHHHHHH
Confidence 46666665668877764 4566677778888899999999999999999999999999999999999 99999999999
Q ss_pred hcchhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHhhhhcCCC
Q psy8697 120 GIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL------DWRSLSYCFLALVLISGLVLICFAPE 193 (508)
Q Consensus 120 G~~~g~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~l~e 193 (508)
|++.+....-.+|+-...++++--++.+...++..+|..++.+++..+ +.+...++......+ +++..+++|.
T Consensus 105 g~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~-a~~~~~fLP~ 183 (412)
T PF01770_consen 105 GLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSL-ALLIALFLPM 183 (412)
T ss_pred HHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHcCC
Confidence 999988766888998889999999999999999999999999999877 567776666655555 6667778887
Q ss_pred CchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHH---HhcCcccchhHHHHHH
Q psy8697 194 SPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQ---ILTTRECYKPLILLVI 270 (508)
Q Consensus 194 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 270 (508)
.++...-+++.+...+ +.+...+..++.++. +...+..+...+.......+..+++ ..+++ .++...
T Consensus 184 ~~~S~~f~r~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~-----~ll~WS 253 (412)
T PF01770_consen 184 PKRSLFFHRKPPAEQD---ANESESDKMNESPES--SSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNP-----RLLLWS 253 (412)
T ss_pred CCcccceeccCccccc---ccccccccccccccc--ccccccCcccccchHHHHHHHHHHHHHHHhcCc-----hHHHHH
Confidence 6654332211100000 000000000000000 0000000000000111111222221 33444 444555
Q ss_pred HHHHHhhcccchhhhcHHHHHHHhCCcchh----hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHH--HHHHHH
Q psy8697 271 LFTLQQFTGVYPVIFYAMQLFKEVGTEIDE----SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGL--GVSSIL 344 (508)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~--~~~~~~ 344 (508)
++.....++++-+..|...+.++..-+.+. +..-....+.+.++.+..|++..+..+..-+.++.... +..+++
T Consensus 254 lWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~l 333 (412)
T PF01770_consen 254 LWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFL 333 (412)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 555566667788888888888876222222 13333444556667777888755555544333333322 222333
Q ss_pred HhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcch
Q psy8697 345 LSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVI 424 (508)
Q Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (508)
+. . ..+.|...+...++...+... .
T Consensus 334 m~-----------------~-------------------------------------t~~Iwv~Y~~yIif~~~y~fl-i 358 (412)
T PF01770_consen 334 MS-----------------F-------------------------------------TGNIWVCYAGYIIFRSLYMFL-I 358 (412)
T ss_pred HH-----------------H-------------------------------------hhHHHHHHHHHHHHHHHHHHH-H
Confidence 33 1 114555555555555555553 3
Q ss_pred hhhHhhhhccCcccchhhHHHHHHHHHHHHHHH
Q psy8697 425 VIPWTMISELLPSYARGVCSGLMISYGYVCMFF 457 (508)
Q Consensus 425 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i 457 (508)
++...-++.....+.-|...|+++....+-+.+
T Consensus 359 TiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 359 TIASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred HHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 444455555556666677777776655554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-11 Score=118.05 Aligned_cols=146 Identities=23% Similarity=0.289 Sum_probs=132.5
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchh-HHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKW-SLILVCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~-~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
....|.+.++..+.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.++....++ .+.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 272 (352)
T cd06174 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS--LALLLVAL 272 (352)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 344555555543378899999999999999999999999999999999 999999999999999999999 99999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGL 185 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~ 185 (508)
++.|++.+...+ ...++.|..|+++|++.+++.+....+|..+++.+.+.+ +|+..+.+.+++.++..+
T Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i 346 (352)
T cd06174 273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346 (352)
T ss_pred HHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999887 899999999998888333
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-11 Score=119.20 Aligned_cols=138 Identities=15% Similarity=0.081 Sum_probs=118.9
Q ss_pred ccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHH
Q psy8697 54 SHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVY 132 (508)
Q Consensus 54 ~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~ 132 (508)
++.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++ .+.+++.+++.|++.+...+ ....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~~~~~~~~~~~ 326 (399)
T PRK05122 249 DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS--PWMALIGAALTGFGFSLVFPALGVE 326 (399)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34567778889999999999999999999999999999999998888888888 88888999999999999888 8888
Q ss_pred hhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCC
Q psy8697 133 VSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPE 193 (508)
Q Consensus 133 i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~e 193 (508)
+.|..|+++|+++.++++....+|..+++.+.+.+ ||+..|++.++..++..+...++.++
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 327 AVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999998888887777 89999999888888744444443333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=117.28 Aligned_cols=163 Identities=14% Similarity=0.128 Sum_probs=122.5
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
........|.+.++.|.+.+. ........++..++.++.|++.||+|||+.+..+..+..++.+...
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~------------ 88 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA------------ 88 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH------------
Confidence 444555677777888876554 4677778888899999999999999999999998888888887776
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
.. .+.+...+...+.+.+.+ ...+...+++.|.+|++
T Consensus 89 -----~~-------------------------------------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~ 125 (385)
T TIGR00710 89 -----LS-------------------------------------NNIETLLVLRFVQAFGAS-AGSVISQALVRDIYPGE 125 (385)
T ss_pred -----HH-------------------------------------ccHHHHHHHHHHHHcchh-HHHHHHHHHHHHhcCcH
Confidence 31 122333333333333222 23455568899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCC
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKG 497 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (508)
.|+++.++.+....+|..+++.+.+.+.+. +|+..+.+.+++.++..+..+...||+++
T Consensus 126 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 126 ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999888 99988888888777766665556676544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=116.59 Aligned_cols=158 Identities=13% Similarity=0.018 Sum_probs=118.5
Q ss_pred hhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccccc
Q psy8697 283 VIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQ 361 (508)
Q Consensus 283 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (508)
.....|.+.++.|.+.++ ........+...++.++.|++.||+|||+++..+..+.+++.+...
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--------------- 92 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSA--------------- 92 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH---------------
Confidence 334567777888876655 4666677777888889999999999999999999888888877776
Q ss_pred CccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchh
Q psy8697 362 SNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARG 441 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 441 (508)
.. ++.+..++.-.+.+.+. ....+...+++.|.+|+++|+
T Consensus 93 --~~-------------------------------------~~~~~l~~~r~~~G~~~-~~~~~~~~~~i~~~~~~~~r~ 132 (390)
T PRK03545 93 --LA-------------------------------------WNFTVLLISRIGIAFAH-AIFWSITASLAIRVAPAGKKA 132 (390)
T ss_pred --Hh-------------------------------------ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCChhhhh
Confidence 31 13333333333332222 234455568899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 442 VCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 442 ~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
++.|+......+|..++|.+.+.+.+. +|++.|++.+++.++..+..+...||.
T Consensus 133 ~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 133 QALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999888 999999998888777655544445554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-10 Score=116.89 Aligned_cols=147 Identities=15% Similarity=0.085 Sum_probs=123.3
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhh
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAG 120 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G 120 (508)
.|.+.++.+ .++.+.+.+.+...++..++.++.|++.||+|||+.+..+.+...++.++..+.++ .+.+.+.-++.|
T Consensus 243 ~p~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g 319 (406)
T PRK11551 243 LPSLLVGQG-LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS--FAGMLLAGFAAG 319 (406)
T ss_pred HHHHHHhCC-CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 455556655 88999999999999999999999999999999999998887777777777777887 888888888999
Q ss_pred cchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhcC
Q psy8697 121 IGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICFA 191 (508)
Q Consensus 121 ~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~l 191 (508)
++.+...+ ..+++.|.+|+++|++..++.+....+|..++|.+++.+ +|...++......++ ..+..+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 395 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILV-AALAALLL 395 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHH-HHHHHHHH
Confidence 98888888 999999999999999999999999999999999999987 566666666655555 43443433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.2e-11 Score=117.56 Aligned_cols=141 Identities=13% Similarity=0.010 Sum_probs=120.4
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhh
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAG 120 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G 120 (508)
.+.+.++.+ .++.+.+++.+...++..+++++.|++.||+|||+.+..+..+..++.++..+.++.....+++..++.|
T Consensus 228 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 228 YKPYGQSLG-LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 344445555 7788889999999999999999999999999999999999999999888888776511234556778889
Q ss_pred cchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q psy8697 121 IGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLI 182 (508)
Q Consensus 121 ~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~ 182 (508)
++.+...+ ...++.|.+|+++|+++.++.+....+|..++|.+.+.+ ||+..|.+.+++.++
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 88888888 889999999999999999999999999999999998877 899999988877766
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-10 Score=116.63 Aligned_cols=178 Identities=14% Similarity=0.138 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHH
Q psy8697 265 LILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSI 343 (508)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~ 343 (508)
.+....+.+..+..-........|.+.++.|.+.+. ........++..++.++.|++.||+|||+.+..+.++.+++.+
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 344444444444444555666677666778776655 4677778888899999999999999999999999888888887
Q ss_pred HHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcc
Q psy8697 344 LLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGV 423 (508)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (508)
... +. .+.+...+.-.+.+.+. ...
T Consensus 89 ~~~-----------------~~-------------------------------------~~~~~l~~~r~l~G~~~-~~~ 113 (412)
T TIGR02332 89 ATM-----------------FA-------------------------------------TGPESLYLLRILVGIAE-AGF 113 (412)
T ss_pred HHH-----------------Hh-------------------------------------cCHHHHHHHHHHHHHHH-hhH
Confidence 777 31 12233333333333333 334
Q ss_pred hhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhh------h-ccchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 424 IVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH------S-SVIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 424 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~------~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
.+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+ . ||++.|.+.++..++..++.++++||++
T Consensus 114 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 114 LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 56666789999999999999999999999999999999998864 3 8999999988887776666677778765
Q ss_pred C
Q psy8697 497 G 497 (508)
Q Consensus 497 ~ 497 (508)
+
T Consensus 194 ~ 194 (412)
T TIGR02332 194 D 194 (412)
T ss_pred c
Confidence 3
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=117.33 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=117.5
Q ss_pred hcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccc
Q psy8697 277 FTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKST 354 (508)
Q Consensus 277 ~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~ 354 (508)
..+......+.|.++++ .|++... ........+..++++++.|+++||+|||+.+..+..+..++.+.+.
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~-------- 91 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP-------- 91 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH--------
Confidence 33455566777777765 6776654 4666667788889999999999999999999888888777776666
Q ss_pred cccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhcc
Q psy8697 355 FTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 434 (508)
+. ++.+...+...+.....+ ...+...++..|.
T Consensus 92 ---------~~-------------------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~ 124 (395)
T PRK10054 92 ---------LV-------------------------------------NNVTLVVLFFALINCAYS-VFSTVLKAWFADN 124 (395)
T ss_pred ---------HH-------------------------------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 31 122222222222222222 3345566888999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 435 LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 435 ~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
.|++.|+++.|+.+...++|..++|.+.+.+.+.++...|.+.+++.++..+...+..|+.
T Consensus 125 ~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 125 LSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988866888889888777776654444434443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=114.09 Aligned_cols=145 Identities=10% Similarity=0.097 Sum_probs=120.6
Q ss_pred hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcch
Q psy8697 44 LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGG 123 (508)
Q Consensus 44 i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~ 123 (508)
+.++.+ .++.+.+++.+...+...++.++.|++.||+|||+++..+..+..+..+...+.++ .+.+.+.+++.|++.
T Consensus 226 ~~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 302 (375)
T TIGR00899 226 IIHELG-LPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS--LWALLMLQLLNAIFI 302 (375)
T ss_pred HHHHcC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 345555 88888999888887788888999999999999999998888777766666667777 888888999999999
Q ss_pred hhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCC
Q psy8697 124 GMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPE 193 (508)
Q Consensus 124 g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~e 193 (508)
+...+ ...++.|..|+ +|+++.++++....+|..++|.+++.+ ||+..|++.++..++ ..+...+++|
T Consensus 303 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ 375 (375)
T TIGR00899 303 GILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIV-ALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-HHHHHheecC
Confidence 98888 88999998875 567999999999999999999999877 899999998888877 5555555554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=116.68 Aligned_cols=178 Identities=15% Similarity=0.083 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHH
Q psy8697 265 LILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSI 343 (508)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~ 343 (508)
.+.........+..+........|.+.++.|.+... ........+...++.++.|+++||+|||+.+..+..+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 344444555555555666667888888888876654 3566677778889999999999999999999998888888877
Q ss_pred HHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcc
Q psy8697 344 LLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGV 423 (508)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (508)
... .. .+.+...+...+.+.+. ...
T Consensus 84 ~~~-----------------~~-------------------------------------~~~~~~~~~~~l~g~~~-~~~ 108 (392)
T PRK10473 84 LCS-----------------LA-------------------------------------ETSSLFLAGRFLQGIGA-GCC 108 (392)
T ss_pred HHH-----------------Hh-------------------------------------CcHHHHHHHHHHHHhhh-hHH
Confidence 766 31 12222233233333222 223
Q ss_pred hhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCC
Q psy8697 424 IVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKG 497 (508)
Q Consensus 424 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (508)
.+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+. +|...+.+.+++.++..++.+...||+++
T Consensus 109 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 109 YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 445568899999999999999999999999999999999888877 88888888888777766655555666543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=115.50 Aligned_cols=135 Identities=16% Similarity=0.009 Sum_probs=119.0
Q ss_pred cchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHh
Q psy8697 55 HFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYV 133 (508)
Q Consensus 55 ~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i 133 (508)
+.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++ .+.+++.+++.|++.+...+ ..+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~~ 327 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT--AWVALAGAALTGAGCSLIFPALGVEV 327 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3566677788888999999999999999999999999999999888888888 88888999999999998888 88899
Q ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcC
Q psy8697 134 SEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFA 191 (508)
Q Consensus 134 ~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l 191 (508)
.|.+|+++||++.++++....+|..++|.+.+.+ ||+..|.+.+++.++..++...+.
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999887 899999999988887555444443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=117.00 Aligned_cols=161 Identities=20% Similarity=0.108 Sum_probs=119.8
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
......+.|.+.++.|.+... ........++.+++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~------------ 100 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCA------------ 100 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH------------
Confidence 345566778887777776544 4666677788899999999999999999999998888888777766
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
.. .+.+...+...+.+.+. ....+...+++.|.+|++
T Consensus 101 -----~~-------------------------------------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~ 137 (398)
T TIGR00895 101 -----LA-------------------------------------TNVTQLLILRFLAGLGL-GGLMPNLNALVSEYAPKR 137 (398)
T ss_pred -----Hc-------------------------------------cchHHHHHHHHHHhccc-ccchhhHHHHHHHHcCHH
Confidence 31 12233333333333322 334566679999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
.|+++.++.+....+|..+++.+.+.+.+. +++..+.+.+++.++..++.+.+.||+
T Consensus 138 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 138 FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999988 888888887666665555555556664
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=117.23 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=119.9
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
......+.|.+.++.|.+..+ ........++..+++++.|++.||+|||+.+..+.++.+++.++..
T Consensus 39 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~------------ 106 (434)
T PRK11663 39 RKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFG------------ 106 (434)
T ss_pred hhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHH------------
Confidence 345667888988888887655 4667778888899999999999999999999999998888887776
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
.. .+.+...+...+.+.+.+.. .+....++.|.+|++
T Consensus 107 -----~~-------------------------------------~~~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~ 143 (434)
T PRK11663 107 -----FS-------------------------------------SSLWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRT 143 (434)
T ss_pred -----HH-------------------------------------hHHHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHH
Confidence 31 12222333333333333333 355568899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEecc
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPE 494 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
+|++++|+.+....+|..+++.+.+.+.+. +|++.|.+.+++.++..++..+.++|
T Consensus 144 ~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 144 ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999988 99999988877666544333333443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=114.84 Aligned_cols=161 Identities=13% Similarity=0.033 Sum_probs=123.3
Q ss_pred chhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccc
Q psy8697 281 YPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCA 359 (508)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 359 (508)
.......|.+.++.|.+... ........+...++.++.|++.||+|||+.+..+.++.+++.....
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~------------- 77 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA------------- 77 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH-------------
Confidence 34455667777777876554 5777788889999999999999999999999999888888877776
Q ss_pred ccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccc
Q psy8697 360 IQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYA 439 (508)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 439 (508)
.. .+.+...+...+.+.+.+ ...+....++.|.+|+++
T Consensus 78 ----~~-------------------------------------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~ 115 (399)
T TIGR00893 78 ----FA-------------------------------------GAYVSLYILRVLLGAAEA-PFFPGIILIVASWFPASE 115 (399)
T ss_pred ----HH-------------------------------------cCHHHHHHHHHHHHHHHH-hhhhHHHHHHHHhCCHHH
Confidence 31 122333333344443333 345566689999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 440 RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 440 r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
|+++.++.+....+|..+++.+.+.+.+. +|++.|.+.+++.++..++.++..||++
T Consensus 116 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 116 RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence 99999999999999999999999998888 9999999888887777666666666544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=115.94 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=118.0
Q ss_pred chhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhh
Q psy8697 56 FGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVS 134 (508)
Q Consensus 56 ~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~ 134 (508)
.+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.++ .+.+++.+++.|++.+...+ ..+++.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT--PLQLGILRFLLGAADGALLPAVQTLLV 337 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 456667778888899999999999999999999999988888888888888 89999999999999999999 999999
Q ss_pred hccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcC
Q psy8697 135 EICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFA 191 (508)
Q Consensus 135 e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l 191 (508)
+..|+++||+.+++.+....+|..+||.+++.+ ||+..|++.+++.++..+...+..
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 899999999988888555444433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=114.87 Aligned_cols=158 Identities=13% Similarity=0.083 Sum_probs=119.6
Q ss_pred hhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccC
Q psy8697 284 IFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQS 362 (508)
Q Consensus 284 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 362 (508)
....|.+.++.|.+.+. ........+...++.++.|.+.||+|||+.+..+..+.+++.+...
T Consensus 40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~---------------- 103 (394)
T PRK10213 40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS---------------- 103 (394)
T ss_pred HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH----------------
Confidence 34567777888876655 4666677888889999999999999999999999999988877766
Q ss_pred ccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhh
Q psy8697 363 NEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGV 442 (508)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 442 (508)
.. .+.+...+.-.+.+.+.+. ..+....++.|.+|+++|++
T Consensus 104 -~~-------------------------------------~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~ 144 (394)
T PRK10213 104 -FA-------------------------------------NSFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPK 144 (394)
T ss_pred -HH-------------------------------------ChHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHH
Confidence 31 1333344433334433333 45666688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 443 CSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 443 ~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
+.++......+|..++|.+.+.+.+. +|++.|++.+++.++..+......||++
T Consensus 145 a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 145 ALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999988 9999998887777665544443456643
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=121.26 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=125.4
Q ss_pred cccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccc
Q psy8697 278 TGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFT 356 (508)
Q Consensus 278 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (508)
..........|.+.++.|.+.+. ........++.+++.++.|++.||+|||+.+..+..+..++.+...
T Consensus 16 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---------- 85 (485)
T TIGR00711 16 LDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG---------- 85 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh----------
Confidence 33455667788888888876544 5777888899999999999999999999999999998888887777
Q ss_pred cccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCc
Q psy8697 357 NCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLP 436 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 436 (508)
.. .+.+...+...+.+ .......+...+++.|.+|
T Consensus 86 -------~~-------------------------------------~~~~~l~~~~~~~G-~~~~~~~~~~~~~i~~~~~ 120 (485)
T TIGR00711 86 -------VA-------------------------------------PNLELMIIFRVIQG-FGGGPLIPLSFSTLLNIYP 120 (485)
T ss_pred -------Cc-------------------------------------CCHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHCC
Confidence 31 12233333333333 3333345666799999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 437 SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 437 ~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
++.|+++.++......+|..++|.+.+.+.+. +|++.|++.+.+.++..++..+..||++
T Consensus 121 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 121 PEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999988 9999998877777666555555556543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-10 Score=109.66 Aligned_cols=161 Identities=15% Similarity=0.109 Sum_probs=134.0
Q ss_pred cccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccc
Q psy8697 278 TGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFT 356 (508)
Q Consensus 278 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (508)
+..+...-.+|.+-++.|.+... ....+.++.+..++.++...+.||+.||++++....+..++.++..
T Consensus 27 ttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~a---------- 96 (394)
T COG2814 27 TTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSA---------- 96 (394)
T ss_pred hHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHH----------
Confidence 33556667888999998887665 5888899999999999999999999999999999999999998888
Q ss_pred cccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCc
Q psy8697 357 NCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLP 436 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 436 (508)
+ ..++..+...=+..+.....+.++..+...++.|
T Consensus 97 -------l--------------------------------------Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvp 131 (394)
T COG2814 97 -------L--------------------------------------APSFAVLLLARALAGLAHGVFWSIAAALAARLVP 131 (394)
T ss_pred -------H--------------------------------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4 1233333333333333344456777799999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEec
Q psy8697 437 SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLP 493 (508)
Q Consensus 437 ~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
+++|+++.+++.....++..+|..+..++-+. ||+.+|+..+.+.++..+..+..+|
T Consensus 132 p~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 132 PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999 9999999999999999888888888
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-10 Score=114.12 Aligned_cols=153 Identities=15% Similarity=0.031 Sum_probs=131.9
Q ss_pred HHhhhccc-ccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy8697 40 YLKYLTRH-YIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKIC 118 (508)
Q Consensus 40 ~~~~i~~~-~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l 118 (508)
..|.+.++ .+ .++.+.|++.+...++..++.++.+++.||.++++.+..+.++..++.++..+.++ .+...++.++
T Consensus 245 ~~p~~~~~~~g-~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 321 (417)
T PRK10489 245 LYPALADEVWQ-MGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM--WILAVLCLAL 321 (417)
T ss_pred hhHHHHHhccC-CChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch--HHHHHHHHHH
Confidence 34555555 55 88899999999999999999999999999988888888888888888888888888 8888889999
Q ss_pred hhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCC
Q psy8697 119 AGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPE 193 (508)
Q Consensus 119 ~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~e 193 (508)
.|++.+...+ ..+++.|..|++.||++++++.....+|..+|+.+.+.+ |++..++..++..++..++....+||
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999988888 889999999999999999999999999999999999888 67888888877777767777777777
Q ss_pred Cc
Q psy8697 194 SP 195 (508)
Q Consensus 194 sp 195 (508)
.+
T Consensus 402 ~~ 403 (417)
T PRK10489 402 LR 403 (417)
T ss_pred cc
Confidence 54
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.4e-10 Score=114.90 Aligned_cols=155 Identities=15% Similarity=0.006 Sum_probs=115.1
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC--CcchHHHHHHHH
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD--PGNIELLYLSKI 117 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~--~~~~~~l~~~r~ 117 (508)
..|.+.++.+ .+....++......++..++.++.|+++||+|||+.++.+..+.+++.++.+... +........+-+
T Consensus 293 ~~p~i~~~~g-~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~ 371 (479)
T PRK10077 293 YAPEIFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 371 (479)
T ss_pred HHHHHHHHcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 3466666665 6766667777778888999999999999999999999999999999887776432 200112233444
Q ss_pred Hhhcchhh-HHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHH
Q psy8697 118 CAGIGGGM-STV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY----------LDWRSLSYCFLALVLISGL 185 (508)
Q Consensus 118 l~G~~~g~-~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~----------l~wr~~f~~~~~~~~~~~~ 185 (508)
+.+.+.+. ..+ ...++.|.+|+++|++++++......+|.++++.+... .+|+..|++.+++.++..+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (479)
T PRK10077 372 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 451 (479)
T ss_pred HHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHH
Confidence 44444443 236 78999999999999999999999988888887544432 2688889998888887666
Q ss_pred hhhhcCCCCc
Q psy8697 186 VLICFAPESP 195 (508)
Q Consensus 186 ~~~~~l~esp 195 (508)
+.+++.||+.
T Consensus 452 ~~~~~~~e~~ 461 (479)
T PRK10077 452 FMWKFVPETK 461 (479)
T ss_pred HHHhccccCC
Confidence 6667788874
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=113.98 Aligned_cols=151 Identities=19% Similarity=0.121 Sum_probs=114.3
Q ss_pred hhhhcHH-HHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccc
Q psy8697 282 PVIFYAM-QLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCA 359 (508)
Q Consensus 282 ~~~~~~~-~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 359 (508)
......| .+.++.|.+... ........+...++.++.|+++||+|||+.+..+.++.+++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~------------- 80 (352)
T PF07690_consen 14 IISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA------------- 80 (352)
T ss_dssp HHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-------------
Confidence 3445556 444556665554 4677778888999999999999999999999999998888844444
Q ss_pred ccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccc
Q psy8697 360 IQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYA 439 (508)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 439 (508)
+ . .+.+...+..++.+.+. ....+....++.|.+|+++
T Consensus 81 ----~-~------------------------------------~~~~~~~~~~~l~g~~~-~~~~~~~~~~i~~~~~~~~ 118 (352)
T PF07690_consen 81 ----F-A------------------------------------SNFWLLLIARFLLGIGS-GFFSPASNALIADWFPPEE 118 (352)
T ss_dssp ----H-H------------------------------------CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCTCC
T ss_pred ----h-h------------------------------------hhHHHHhhhcccccccc-ccccccccccccccchhhh
Confidence 2 1 13343333333333333 3455666799999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhe
Q psy8697 440 RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGF 487 (508)
Q Consensus 440 r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~ 487 (508)
|+++.++.+....+|..++|.+.+.+.+. ++++.|++.+++.++..++
T Consensus 119 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 119 RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 99999999999999999999999999977 9999999999988888664
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-10 Score=112.60 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=121.4
Q ss_pred chhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccc
Q psy8697 281 YPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCA 359 (508)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 359 (508)
.......|.+.++.|.+... ........++..++.++.|++.||+|||+.+..+..+.+++.++..
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~------------- 86 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT------------- 86 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH-------------
Confidence 34556778888888876554 5777888899999999999999999999999999999988887777
Q ss_pred ccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccc
Q psy8697 360 IQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYA 439 (508)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 439 (508)
.. ++.+...+...+.+.+.+. ..+.....+.|.+|+++
T Consensus 87 ----~~-------------------------------------~~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~ 124 (382)
T PRK10091 87 ----LS-------------------------------------SSYLMLAIGRLVSGFPHGA-FFGVGAIVLSKIIKPGK 124 (382)
T ss_pred ----Hh-------------------------------------CcHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhCChHH
Confidence 31 1333333333333333232 33444577889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 440 RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 440 r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
|+++.++......++..+++.+.+.+.+. +|++.|.+.+++.++..+..+...||.+
T Consensus 125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999998887 9999999888877766555445567654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=110.30 Aligned_cols=142 Identities=9% Similarity=0.040 Sum_probs=123.8
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~ 119 (508)
..|...++.+ .++.+.|.+.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++ .+.+++.++++
T Consensus 227 ~~~~~l~~~g-~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~q~l~ 303 (382)
T TIGR00902 227 FSAIYWQAAG-ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEA--FPLIFLLQILH 303 (382)
T ss_pred HHHHHHHHCC-CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHH
Confidence 3444445655 89999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hcchhhHHH-HHHHhhhccCCCCchhHHHHHH-HHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhh
Q psy8697 120 GIGGGMSTV-AMVYVSEICHENFRPAILCLNS-VFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 120 G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~-~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 187 (508)
|+..+...+ ...++.+. |+++|++..++++ ...++|..+++.+++.+ ++ ..|++.++++++ .++.
T Consensus 304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~-~~~~ 374 (382)
T TIGR00902 304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAA-AFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH-HHHH
Confidence 999999999 99999998 9999999999986 56789999999999988 65 567777777766 4433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=113.85 Aligned_cols=140 Identities=14% Similarity=0.005 Sum_probs=106.3
Q ss_pred Hh-hhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHH--HHhcCCcchHHHHHHHH
Q psy8697 41 LK-YLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLL--TILADPGNIELLYLSKI 117 (508)
Q Consensus 41 ~~-~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l--~~~~~~~~~~~l~~~r~ 117 (508)
+| +++++++ .+..+.++..+...++..++.+++|+++||+|||+.+..+..+..++..+ ....++ .+.+.+.++
T Consensus 281 ~p~yl~~~~g-~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 357 (467)
T PRK09556 281 SPVYAFQELG-FSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATS--EYMYLASLF 357 (467)
T ss_pred HHHHHHHccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHH
Confidence 45 3445566 89999999999999999999999999999999998776655444443322 233455 777778888
Q ss_pred HhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHH-HHHHHHHHHHhh-h---------------hHHHHHHHHHH
Q psy8697 118 CAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISC-GILLTTILNLYL-D---------------WRSLSYCFLAL 179 (508)
Q Consensus 118 l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~l-G~~~g~~l~~~l-~---------------wr~~f~~~~~~ 179 (508)
+.|++...... ......|..|+++||.+.|+.+...++ |..++|.+.+.+ + |+..|++..+.
T Consensus 358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~ 437 (467)
T PRK09556 358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA 437 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence 88865444333 456777999999999999999988886 767777776665 4 99999888777
Q ss_pred HHHH
Q psy8697 180 VLIS 183 (508)
Q Consensus 180 ~~~~ 183 (508)
.++.
T Consensus 438 ~~~~ 441 (467)
T PRK09556 438 AIGC 441 (467)
T ss_pred HHHH
Confidence 7763
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.4e-10 Score=114.29 Aligned_cols=157 Identities=11% Similarity=-0.025 Sum_probs=108.4
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
.+....+.|.+.++.|.+.++ ........++..++.++.|+++||+|||+.+..+.++.+++.++..
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~------------ 119 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMS------------ 119 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH------------
Confidence 344556677777788886555 3555666677888999999999999999999888888877776666
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
.. .+.+...+..++.+.+.+ ...+ ...++.|.+|++
T Consensus 120 -----~~-------------------------------------~s~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~ 155 (476)
T PLN00028 120 -----LV-------------------------------------SSATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGK 155 (476)
T ss_pred -----Hh-------------------------------------cCHHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChh
Confidence 31 022222222233332222 2223 346788999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHhh---------h-ccchhHHHHHHHHHHhhheeEEEe
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAIH---------S-SVIGTFNVFGLVSFTLVGFVYFYL 492 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~---------~-g~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
.||.+.|+.+...++|..+++.+.+.+.. . ||++.|.+.+++.++..++.+++.
T Consensus 156 ~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 156 IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999998888888888777765532 2 688899988888776655544433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-10 Score=115.77 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=125.9
Q ss_pred HHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhh
Q psy8697 269 VILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSS 347 (508)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~ 347 (508)
..+..+....-...+..-.|.+.++.|.+.+. .+....+.++...+.++.|+++||+|||+.+..+..+..++.+...
T Consensus 11 ~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~- 89 (495)
T PRK14995 11 IVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA- 89 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-
Confidence 33333333333556677789998888776544 5677777888888889999999999999999999999988888877
Q ss_pred ccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhh
Q psy8697 348 NLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIP 427 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (508)
.. .+.+..++.-.+.+.+.+ ...+..
T Consensus 90 ----------------~a-------------------------------------~~~~~li~~r~l~G~g~~-~~~~~~ 115 (495)
T PRK14995 90 ----------------FS-------------------------------------PTASWLIATRALLAIGAA-MIVPAT 115 (495)
T ss_pred ----------------Hc-------------------------------------CCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 31 133333333333333333 234444
Q ss_pred Hhhhhcc-CcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 428 WTMISEL-LPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 428 ~~~~~e~-~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
...+.+. .|++.|+++.|+......+|..++|.+.+.+.+. +|++.|++...+.++..++.++.+|+.+
T Consensus 116 ~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 116 LAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4555555 4778999999999999999999999999999998 9999999888777776666555566643
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=110.72 Aligned_cols=148 Identities=12% Similarity=0.084 Sum_probs=121.4
Q ss_pred HHhhhc-ccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy8697 40 YLKYLT-RHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKIC 118 (508)
Q Consensus 40 ~~~~i~-~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l 118 (508)
.+|.+. ++++ .+..+.+++.+.+.++..++.+..|+++||+|||+.+.....+..+...+....++ .+.+.+..++
T Consensus 227 ~~p~~l~~~~g-~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 303 (394)
T PRK03699 227 WVPEYAQKKFG-MSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD--PSHLLYAILG 303 (394)
T ss_pred HHHHHHHHHcC-CChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHH
Confidence 355554 4455 89999999999999999999999999999999999998888887777777777777 7777778889
Q ss_pred hhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCC
Q psy8697 119 AGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 119 ~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~ 192 (508)
.|++.+...+ ..++..|..| +++++..+.......+|..++|.+.+.+ ||+..+++.+++.++ ..+....++
T Consensus 304 ~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~-~~~~~~~~~ 380 (394)
T PRK03699 304 LGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAV-VFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHH-HHHHHHHHH
Confidence 9998888888 8888888775 4567888888888899999999999887 899999988888777 434444444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-10 Score=116.91 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=115.6
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc--cchhHHHH--HHHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI--GRKWSLIL--VCVPYIISSLLTILADPGNIELLYLSK 116 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~--Grk~~l~~--~~~~~~i~~~l~~~~~~~~~~~l~~~r 116 (508)
+|.+.++.+ .+..+.+++.+...++..+++++.|.++||. ++|+...+ +..+.+++.++....++ ++.+++.+
T Consensus 264 l~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~~~~i~~ 340 (455)
T TIGR00892 264 LVPYAKDKG-VDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGD--YTGLVIYC 340 (455)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhch--HHHHHHHH
Confidence 344445555 8899999999999999999999999999984 34443333 34444555566677788 99999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHH
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLI 182 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~ 182 (508)
++.|++.+...+ ..+++.|.+|++++++..++++....+|.++||.+++.+ +|+..|++.+++.++
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li 412 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVS 412 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHH
Confidence 999999999999 999999999999999999999999999999999999977 599999998887766
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.3e-10 Score=116.47 Aligned_cols=155 Identities=14% Similarity=0.026 Sum_probs=118.9
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh---cCCc------chH
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL---ADPG------NIE 110 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~---~~~~------~~~ 110 (508)
..|.+.++.+ .+..+.++......++..++.+++|+++||+|||+.+..+.++.+++.++.++ .... +..
T Consensus 306 ~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (481)
T TIGR00879 306 YSPTIFENAG-VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNV 384 (481)
T ss_pred HHHHHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Confidence 3556666666 77788889999999999999999999999999999999998888888777762 1110 022
Q ss_pred HHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q psy8697 111 LLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGL 185 (508)
Q Consensus 111 ~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~ 185 (508)
.+....++.+.......+ ...++.|.+|+++|++++++.+....+|.++++.+.+.+ +|++.|++.++++++..+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i 464 (481)
T TIGR00879 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLI 464 (481)
T ss_pred HHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHH
Confidence 333333333332323345 777889999999999999999999999999999988876 799999999988888666
Q ss_pred hhhhcCCCCc
Q psy8697 186 VLICFAPESP 195 (508)
Q Consensus 186 ~~~~~l~esp 195 (508)
+..++.||++
T Consensus 465 ~~~~~~~~~~ 474 (481)
T TIGR00879 465 FVYFFLPETK 474 (481)
T ss_pred HHheecccCC
Confidence 6667778764
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=111.39 Aligned_cols=159 Identities=10% Similarity=0.025 Sum_probs=116.7
Q ss_pred hhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccC
Q psy8697 284 IFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQS 362 (508)
Q Consensus 284 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 362 (508)
.--.|.+.++.+.+.+. ......+.++..++.++.|+++||+|||+++..+..+.+++.+...
T Consensus 36 ~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---------------- 99 (413)
T PRK15403 36 QPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL---------------- 99 (413)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH----------------
Confidence 33444555666665544 3566677788889999999999999999999998888887777666
Q ss_pred ccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhh
Q psy8697 363 NEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGV 442 (508)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 442 (508)
.. .+.+..++.-++.+.+.+ ...+.....+.|.+|++.+++
T Consensus 100 -~a-------------------------------------~~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~ 140 (413)
T PRK15403 100 -FT-------------------------------------TSMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIK 140 (413)
T ss_pred -Hc-------------------------------------CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHH
Confidence 31 122333333333333332 233445678889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCC
Q psy8697 443 CSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKG 497 (508)
Q Consensus 443 ~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (508)
++++.+....++..++|.+.+.+.+. +|++.|++.+++.++..+..++.+||+++
T Consensus 141 ~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 141 LMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999888 99999999888877776655555777643
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-10 Score=114.16 Aligned_cols=166 Identities=12% Similarity=-0.022 Sum_probs=121.4
Q ss_pred HHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccc
Q psy8697 274 LQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMK 352 (508)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~ 352 (508)
+......+.+..+.|.+.++.|.+... ........+...++.++.|+++||+|||+.+..+..+.+++.+...
T Consensus 20 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~------ 93 (471)
T PRK10504 20 FMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA------ 93 (471)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH------
Confidence 333333556677899999988887655 3556667777888999999999999999999888877777776655
Q ss_pred cccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhh
Q psy8697 353 STFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMIS 432 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (508)
.. .+.+...+...+.+.+.+ ...+...+++.
T Consensus 94 -----------~~-------------------------------------~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~ 124 (471)
T PRK10504 94 -----------LS-------------------------------------GTLNELLLARVLQGVGGA-MMVPVGRLTVM 124 (471)
T ss_pred -----------Hh-------------------------------------CCHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence 31 122333333333333332 34556668889
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEecc
Q psy8697 433 ELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPE 494 (508)
Q Consensus 433 e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
|.+|++.|+++.|+.+....+|..++|.+.|.+.+. +|.+.|.+...+..+..+......|+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 125 KIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998 99999988776666655554444444
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=110.71 Aligned_cols=162 Identities=12% Similarity=0.035 Sum_probs=117.5
Q ss_pred chhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccc
Q psy8697 281 YPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCA 359 (508)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 359 (508)
..+....|.+.++.|.+... ........++..++.++.|+++||+|||+.+..+..+.+++.+...
T Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~------------- 96 (406)
T PRK15402 30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAIL------------- 96 (406)
T ss_pred hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-------------
Confidence 34444566677777776554 4566777788889999999999999999999988888887777666
Q ss_pred ccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccc
Q psy8697 360 IQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYA 439 (508)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 439 (508)
.. .+.+.......+.+.+.+ ...+...+.+.|.+|++.
T Consensus 97 ----~~-------------------------------------~~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~ 134 (406)
T PRK15402 97 ----LA-------------------------------------QSIEQFTLLRFLQGIGLC-FIGAVGYAAIQESFEEAD 134 (406)
T ss_pred ----HH-------------------------------------ccHHHHHHHHHHHHhHhh-hHHHHHHHHHHHHhChhH
Confidence 31 122222222222222222 233555688899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCC
Q psy8697 440 RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKG 497 (508)
Q Consensus 440 r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (508)
|+++.++......++..++|.+.+.+.+. +|++.+++.+++.++..+..+...||+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 135 AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999888889999999999999888 99999988888877766655555676643
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=109.28 Aligned_cols=158 Identities=11% Similarity=-0.050 Sum_probs=114.4
Q ss_pred chhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccc
Q psy8697 281 YPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCA 359 (508)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 359 (508)
.......|.+..+.+.+... ........+..+++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~------------- 82 (365)
T TIGR00900 16 AITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP------------- 82 (365)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH-------------
Confidence 34455567777776665444 4677777888899999999999999999999988888777776665
Q ss_pred ccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccc
Q psy8697 360 IQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYA 439 (508)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 439 (508)
.....+. .+.+...+...+.+.+.+ ...+...+++.|..|+++
T Consensus 83 ----~~~~~~~--------------------------------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~ 125 (365)
T TIGR00900 83 ----FVALLGG--------------------------------LNIWQVYVLAGILAIAQA-FFTPAYQAMLPDLVPEEQ 125 (365)
T ss_pred ----HHHHcCC--------------------------------CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCHHH
Confidence 3211100 022333333333333333 345556689999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhee
Q psy8697 440 RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFV 488 (508)
Q Consensus 440 r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 488 (508)
|+++.++.+....+|..++|.+.+.+.+. ++...|++.++..++..++.
T Consensus 126 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 126 LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 89888887776666554433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-10 Score=108.91 Aligned_cols=161 Identities=13% Similarity=0.081 Sum_probs=133.3
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
-..+..-.|.+.++.+++..+ ....+.+.+.--++.++.|.++||.+.|..+..++++.++..++++
T Consensus 45 RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~G------------ 112 (448)
T COG2271 45 RKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFG------------ 112 (448)
T ss_pred HHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHh------------
Confidence 345667788888887787655 5788889999999999999999999999999999999999999999
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
+. ++.+...++..+-+.+-+.++.|.. ..+..-+|++
T Consensus 113 -----fs-------------------------------------~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~ 149 (448)
T COG2271 113 -----FS-------------------------------------PSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRK 149 (448)
T ss_pred -----hh-------------------------------------hHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCcc
Confidence 51 1334445555556666666665554 7888889999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHh--HHHhhh-ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAF--PFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~--g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
+||+..++-|+..++|+.+.|.+. +.+.++ +|...|++-++++++..++.++..+++
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999 888888 999999999999998888877766654
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=109.47 Aligned_cols=173 Identities=14% Similarity=0.078 Sum_probs=120.9
Q ss_pred HHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHh
Q psy8697 268 LVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~ 346 (508)
...+..+.............|.+.++.|.+... ........++..++.++.|++.||+|||+.+..+.++.+++.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 95 (405)
T TIGR00891 16 AAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 333333333334555666677777778886554 4677778888999999999999999999999998888888877776
Q ss_pred hccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhh
Q psy8697 347 SNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVI 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (508)
.. .+.+..+....+.+.+.+ ...+.
T Consensus 96 -----------------~~-------------------------------------~~~~~l~~~~~l~G~~~~-~~~~~ 120 (405)
T TIGR00891 96 -----------------FA-------------------------------------PGYITMFIARLVIGIGMG-GEYGS 120 (405)
T ss_pred -----------------Hh-------------------------------------ccHHHHHHHHHHHHhhhh-hhhHH
Confidence 31 122333333333333333 34455
Q ss_pred hHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c--cchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 427 PWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S--VIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 427 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
..+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+. + |...|.+.++..++. ++.....||++
T Consensus 121 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~ 192 (405)
T TIGR00891 121 SAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence 568899999999999999999999999999999999988876 5 777777655444443 33334456653
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.8e-08 Score=96.22 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=96.8
Q ss_pred ccchhH-HHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHH
Q psy8697 54 SHFGPT-TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMV 131 (508)
Q Consensus 54 ~~~g~~-~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~ 131 (508)
...|.. .++......+++++.+.+.|+.|.|+.+.++......-.+..-+.. -+.++++-.+.|+|.+..+. --.
T Consensus 49 ~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N---~y~~yfssallG~Gaallw~GqG~ 125 (461)
T KOG3098|consen 49 AYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN---SYYLYFSSALLGFGAALLWTGQGG 125 (461)
T ss_pred CCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc---hHHHHHHHHHhhhhHHheecccce
Confidence 334444 8888999999999999999999999999999999988777776655 47788999999999999999 999
Q ss_pred HhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 132 YVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 132 ~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
|++|..+++.+.+..++.......+.++|...-..+
T Consensus 126 ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 126 YLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred ehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 999999999999999999888888888887766554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-10 Score=118.52 Aligned_cols=143 Identities=14% Similarity=0.039 Sum_probs=109.0
Q ss_pred HHHhhhcc-cccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q psy8697 39 VYLKYLTR-HYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKI 117 (508)
Q Consensus 39 ~~~~~i~~-~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~ 117 (508)
..+|.+.+ +.+ .+..+.+++.+...++..++.++.|+++||+|||+++..+..+..++.++.....+.+.+.+.+..+
T Consensus 296 ~~lp~~l~~~~g-~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 296 ALLPTYLKTDLG-YDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred HHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34566654 555 8999999999999999999999999999999999999888777776665544433211444445555
Q ss_pred HhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q psy8697 118 CAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLI 182 (508)
Q Consensus 118 l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~ 182 (508)
+.|.......+ ..+++.|.+|+++|++++++......+|..+||.+++.+ ||+..+...+....+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 55444333455 778899999999999999999999999999999999887 788777665544433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-09 Score=108.34 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=113.7
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhh
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAG 120 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G 120 (508)
+|.+.++.+ .++++.+++.+...++..+++++.|++.||+|||+++..+..+..++.+... + ........++.|
T Consensus 223 lp~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~l~g 296 (381)
T PRK03633 223 MPLYLNHQG-MSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---S--QAAMAPALFILG 296 (381)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---h--hHHHHHHHHHHH
Confidence 455555555 8888899999999999999999999999999999999888888877665543 2 334456778888
Q ss_pred cchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q psy8697 121 IGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLI 182 (508)
Q Consensus 121 ~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~ 182 (508)
++.....| ..+++.|..|+++++...+.+....++|..+||.+++.+ +|++.|.+.+.+.++
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~ 363 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFI 363 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 88777888 999999999998888888888889999999999999988 799999988887776
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=111.26 Aligned_cols=153 Identities=12% Similarity=0.092 Sum_probs=110.6
Q ss_pred ccchhhhcHHHHHHH-hCCcchhh-HHHHHHHHHHHHHHHHHHHhhccc-CCeeehhhhhhHHHHHHHHHhhcccccccc
Q psy8697 279 GVYPVIFYAMQLFKE-VGTEIDES-HALVFLGIIRFGMSVVTTVLARGF-GRKQLLIVSAAGLGVSSILLSSNLLMKSTF 355 (508)
Q Consensus 279 ~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~l~~~~~~~~~~ 355 (508)
.++.+..++|.++.+ .|++.... ...........++.+++|+++||+ |||+.+..+.++..++.+++.
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~--------- 94 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLG--------- 94 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH---------
Confidence 367778889998876 57765543 556666677788999999999999 999999999999988877665
Q ss_pred ccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccC
Q psy8697 356 TNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELL 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 435 (508)
.. . .......+.+.+...+.+. ..+...++++|.+
T Consensus 95 --------~~-~-----------------------------------~~~~~~~l~l~li~iG~G~-~~~~~~alv~elf 129 (493)
T PRK15462 95 --------AS-E-----------------------------------IHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELY 129 (493)
T ss_pred --------Hh-h-----------------------------------cchhHHHHHHHHHHHhccc-ccccHHHHHHHHC
Confidence 20 0 0111122222222222222 2344458899999
Q ss_pred ccc--chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhh
Q psy8697 436 PSY--ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLV 485 (508)
Q Consensus 436 p~~--~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 485 (508)
|++ .|+++.++.+...++|+.++|.+.|++.+. ||+..|.+.++..+++.
T Consensus 130 p~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 130 EPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred CCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 976 699999999999999999999999999988 99999887665444443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=109.17 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=115.4
Q ss_pred cchhhhcHHHHHH-HhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccc
Q psy8697 280 VYPVIFYAMQLFK-EVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTN 357 (508)
Q Consensus 280 ~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (508)
.+....+.+.+++ +.|.+... ........+...+..++.|+++||+|||+.+..+..+..++.+...
T Consensus 26 ~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~----------- 94 (400)
T PRK11646 26 FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA----------- 94 (400)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH-----------
Confidence 3445566666664 46765544 3555556677777789999999999999999999999988888777
Q ss_pred ccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcc
Q psy8697 358 CAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPS 437 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 437 (508)
.. ++.+...+...+.+.+. ....+...+++.|.+|+
T Consensus 95 ------~~-------------------------------------~~~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~ 130 (400)
T PRK11646 95 ------IA-------------------------------------HEPWLLWLSCILSGLGG-TLFDPPRTALVIKLIRP 130 (400)
T ss_pred ------Hh-------------------------------------ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCH
Confidence 31 12333333333333332 22345556888999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 438 YARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 438 ~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
+.|+++.|+.+....+|..++|.+.+.+.+.++++.|++.+.+.++..++.....||.
T Consensus 131 ~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 131 HQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999955888888887777666544433445553
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-09 Score=108.57 Aligned_cols=148 Identities=18% Similarity=0.147 Sum_probs=107.5
Q ss_pred hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHHHHhh
Q psy8697 44 LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL---ADPGNIELLYLSKICAG 120 (508)
Q Consensus 44 i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~---~~~~~~~~l~~~r~l~G 120 (508)
+.++.+ .+......+.....+...++.++.|+++||+|||++++.+.++..++.+.... ..+ ..+.+++..++.|
T Consensus 277 ~~~~~g-~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 354 (438)
T PRK09952 277 STQNLG-LPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQS-IFWIVFFSIMLAN 354 (438)
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Confidence 344444 66665555555666677888899999999999999988887766655443322 222 1445555667778
Q ss_pred cchhhHHH-HHHHhhhccCCCCchhHHHHH-HHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHhhhhcCC
Q psy8697 121 IGGGMSTV-AMVYVSEICHENFRPAILCLN-SVFISCGILLTTILNLYL------DWRSLSYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 121 ~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~-~~~~~lG~~~g~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~l~ 192 (508)
++.+...+ ..++++|.+|++.|+...++. +.+..+|..++|.+.+++ +|+..+...++..++ ..+..+.++
T Consensus 355 ~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i-~~v~~~~~~ 433 (438)
T PRK09952 355 IAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLI-SAMTALLMK 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-HHHHHHHcc
Confidence 88888888 999999999999999888885 444558888999888877 388888877777776 455555667
Q ss_pred CC
Q psy8697 193 ES 194 (508)
Q Consensus 193 es 194 (508)
|+
T Consensus 434 ~~ 435 (438)
T PRK09952 434 DN 435 (438)
T ss_pred cc
Confidence 65
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=109.19 Aligned_cols=160 Identities=11% Similarity=0.016 Sum_probs=113.3
Q ss_pred chhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccc
Q psy8697 281 YPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCA 359 (508)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 359 (508)
..+....|.+.++.|.+.++ ........++..++.+..|++.||+|||+++.........+.....
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~------------- 74 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL------------- 74 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH-------------
Confidence 34556678888888886655 4667777888889999999999999998876544443333322112
Q ss_pred ccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccc
Q psy8697 360 IQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYA 439 (508)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 439 (508)
. ..+.+..++.-++.+.+.+ ..+......+|.+|+++
T Consensus 75 ----~-------------------------------------~~~~~~l~~~R~l~G~g~~--~~~~~~~~~~~~~~~~~ 111 (368)
T TIGR00903 75 ----D-------------------------------------PFNYEWLLACQLLAALGQP--FLLNAFAPAASQIREER 111 (368)
T ss_pred ----H-------------------------------------hccHHHHHHHHHHHHhHhH--HHHHHHHHHHHHcCHHH
Confidence 0 0122233333333333322 23334466689999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 440 RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 440 r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
|+++.++.+....+|..+++.+.+.+.+. ||+..|.+.+++.++..++.++.+||..
T Consensus 112 r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 112 RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999888 9999999988888777776666778754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=107.79 Aligned_cols=159 Identities=9% Similarity=-0.028 Sum_probs=114.5
Q ss_pred hhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccccc
Q psy8697 283 VIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQ 361 (508)
Q Consensus 283 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (508)
.....|.+.++.|.+... ........+...++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 27 ~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~--------------- 91 (394)
T PRK11652 27 YVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL--------------- 91 (394)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH---------------
Confidence 334567777788886655 4667778888899999999999999999999988888777776665
Q ss_pred CccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchh
Q psy8697 362 SNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARG 441 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 441 (508)
.. .+.+...+...+.+.+.+ ...+....+..|.++.+.++
T Consensus 92 --~~-------------------------------------~~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 131 (394)
T PRK11652 92 --FA-------------------------------------HSLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLR 131 (394)
T ss_pred --HH-------------------------------------ccHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHH
Confidence 20 022223232222222222 22345557778888988999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 442 VCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 442 ~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
.+.+..+....++..++|.+.+.+.+. +|+..|.+.++..++..+....+.||++
T Consensus 132 ~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 132 HANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999887 9998898887766655444444566654
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=109.46 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=119.8
Q ss_pred hhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccccc
Q psy8697 283 VIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQ 361 (508)
Q Consensus 283 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (508)
.....|.+.++.|.+.++ ........++..++.++.|+++||+|||+.+..+..+.+++.....
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~--------------- 74 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA--------------- 74 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH---------------
Confidence 335577777888876554 4667778888899999999999999999999999888888887777
Q ss_pred CccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchh
Q psy8697 362 SNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARG 441 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 441 (508)
.. .+.+...+...+.+.+.+ ...+...+++.|.+|++.|+
T Consensus 75 --~~-------------------------------------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~ 114 (377)
T PRK11102 75 --LA-------------------------------------QTIDQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFS 114 (377)
T ss_pred --HH-------------------------------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHH
Confidence 31 122333333333333333 33455568899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 442 VCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 442 ~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
++.++.+....+|..++|.+.+.+.+. +++..|.+.+.+.++..++..+..||+
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 115 RMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999988 998898888887777665555556654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.5e-10 Score=110.28 Aligned_cols=161 Identities=12% Similarity=0.029 Sum_probs=119.6
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
...+....|.+.++.|.+.+. ........++..++.++.|+++||+|||+.+..+..+..++.++..
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~------------ 78 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG------------ 78 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHH------------
Confidence 344556677777777886654 4677788888999999999999999999999999988888887777
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
.. .+.+...+...+.+.+. ....+...+++.|.+|++
T Consensus 79 -----~~-------------------------------------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~ 115 (379)
T TIGR00881 79 -----FS-------------------------------------TSLWVMAALWALNGIFQ-GMGWPPCGRTVTKWFSRS 115 (379)
T ss_pred -----Hh-------------------------------------hhHHHHHHHHHHHHhhc-cccCCchHHHHHHhcCHh
Confidence 31 12233333333333333 334566668999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHH-HhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVK-AFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~-~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
+|+++.++.+....+|..+++. +.+.+.+. ++...|.+.+++.++..++.+.+.+|+
T Consensus 116 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 116 ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 9999999999999999999994 55566566 888888888877776666666666554
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.3e-09 Score=105.45 Aligned_cols=152 Identities=12% Similarity=0.037 Sum_probs=119.3
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhh
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAG 120 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G 120 (508)
+|.+.++.+ .+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....++. ...+ .-++.|
T Consensus 228 lp~~l~~~g-~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~--~~~l~g 303 (393)
T PRK09705 228 LPAFYIEIG-ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ-LPVL--WAMVCG 303 (393)
T ss_pred HHHHHHHcC-CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch-HHHH--HHHHHH
Confidence 444445555 899999999999999999999999999999999999998888887777665543430 2222 234668
Q ss_pred cchhhHHH-HHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhcCCC
Q psy8697 121 IGGGMSTV-AMVYVSEICH-ENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICFAPE 193 (508)
Q Consensus 121 ~~~g~~~~-~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~l~e 193 (508)
++.+...+ ......+..+ +++|++..++.+....++..++|.+.+++ +|+..|++..+..++..+....+.||
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888878 7777777775 57899999999999999999999999888 47888888887777756666777888
Q ss_pred Cch
Q psy8697 194 SPH 196 (508)
Q Consensus 194 sp~ 196 (508)
++.
T Consensus 384 ~~~ 386 (393)
T PRK09705 384 RFP 386 (393)
T ss_pred ccc
Confidence 753
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=108.63 Aligned_cols=140 Identities=20% Similarity=0.216 Sum_probs=108.6
Q ss_pred HHHhhhc-ccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHH--HHHHhc--CCcchHHHH
Q psy8697 39 VYLKYLT-RHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISS--LLTILA--DPGNIELLY 113 (508)
Q Consensus 39 ~~~~~i~-~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~--~l~~~~--~~~~~~~l~ 113 (508)
...|.+. ++.+ .++.+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+. ++ .+.++
T Consensus 240 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 316 (394)
T TIGR00883 240 TYLPTYLTQTLG-LSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGS--FTLFF 316 (394)
T ss_pred HHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCc--hHHHH
Confidence 3455554 4444 888899999999999999999999999999999998776555444333 222222 45 77778
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHH-HHHHHHHHHHHHHHHHHhh----h-hHHHHHHHHHHHH
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCL-NSVFISCGILLTTILNLYL----D-WRSLSYCFLALVL 181 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~-~~~~~~lG~~~g~~l~~~l----~-wr~~f~~~~~~~~ 181 (508)
+..++.|++.+...+ ..+++.|.+|+++|+++.++ .+....+|..++|.+++.+ + |+..++...+..+
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 317 FLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 888999999989988 99999999999999999998 4566678888999988877 5 8877666655444
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.3e-09 Score=105.33 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=111.5
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHH-HHHHHHHHHHHHHHh-----cCCcchHHHH
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLI-LVCVPYIISSLLTIL-----ADPGNIELLY 113 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~-~~~~~~~i~~~l~~~-----~~~~~~~~l~ 113 (508)
..|.+.++.+ .+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...++.+.... .++ .+..+
T Consensus 244 ~~p~~~~~~g-~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~ 320 (402)
T TIGR00897 244 FLPMFVAELG-FSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS--FAVAL 320 (402)
T ss_pred HHHHHHHHcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc--HHHHH
Confidence 4556656665 88889999999999999999999999999999988764 333334443333322 234 77778
Q ss_pred HHHHHhhcchhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhh
Q psy8697 114 LSKICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLIC 189 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 189 (508)
+..++.|++.+...+....+.|.. +++|+++.++.+....+|..++|.+++.+ ||+..+++.+++.++ ..+...
T Consensus 321 ~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i-~~~~~~ 398 (402)
T TIGR00897 321 IIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVV-SAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH-HHHHHH
Confidence 889999998887655445667764 56899999999999999999999999887 899999998888777 333333
Q ss_pred c
Q psy8697 190 F 190 (508)
Q Consensus 190 ~ 190 (508)
+
T Consensus 399 ~ 399 (402)
T TIGR00897 399 F 399 (402)
T ss_pred H
Confidence 3
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-09 Score=107.60 Aligned_cols=162 Identities=11% Similarity=0.025 Sum_probs=112.4
Q ss_pred hhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccc
Q psy8697 282 PVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAI 360 (508)
Q Consensus 282 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 360 (508)
.+....|.+. +.|.+.++ ........++..++.++.|+++||+|||+.+..+.++.+++.+...
T Consensus 45 ~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~-------------- 109 (438)
T TIGR00712 45 NFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG-------------- 109 (438)
T ss_pred cHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHh--------------
Confidence 3444556554 45776655 4667778888999999999999999999999988888888877766
Q ss_pred cCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccch
Q psy8697 361 QSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYAR 440 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 440 (508)
...... ...+...+...+.+.+.+.. .+.....+.|.+|+++|
T Consensus 110 ---~~~~~~---------------------------------~~~~~l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~r 152 (438)
T TIGR00712 110 ---FVPWAT---------------------------------SSIAIMFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSER 152 (438)
T ss_pred ---cccccc---------------------------------chHHHHHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccc
Confidence 311100 01122222223333333333 34445778899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHhh-h-ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 441 GVCSGLMISYGYVCMFFMVKAFPFAIH-S-SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 441 ~~~~g~~~~~~~~g~~i~~~~~g~l~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
+++.|+.+....+++.+++.+.+...+ . +|+..|++.++++++..+..+++.||+
T Consensus 153 g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 153 GTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999888776554 3 889999988888777655555555553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-09 Score=108.94 Aligned_cols=146 Identities=18% Similarity=0.055 Sum_probs=109.3
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
........|.+.++.|.+..+ ........++..++.++.|+++||+|||+.+..+.++.+++.+...
T Consensus 34 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~------------ 101 (426)
T PRK12307 34 FMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG------------ 101 (426)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH------------
Confidence 344455566666778776554 4667778888899999999999999999999999999988887776
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
.. .+.+...+.-.+.+.+.+ ...+....++.|.+|++
T Consensus 102 -----~~-------------------------------------~~~~~l~~~r~l~G~g~g-~~~~~~~~~~~~~~~~~ 138 (426)
T PRK12307 102 -----LA-------------------------------------SGVIMLTLSRFIVGMGMA-GEYACASTYAVESWPKH 138 (426)
T ss_pred -----HH-------------------------------------hHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhCCHh
Confidence 31 122333333333333322 34455568899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHH
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLV 480 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~ 480 (508)
.|+++.++......+|.++++.+.+.+.+. +|++.|++....
T Consensus 139 ~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 139 LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 999999999999999999999999888887 888888765433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.4e-09 Score=104.64 Aligned_cols=161 Identities=15% Similarity=0.107 Sum_probs=109.2
Q ss_pred ccchhhhcHHH-HHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccc
Q psy8697 279 GVYPVIFYAMQ-LFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFT 356 (508)
Q Consensus 279 ~~~~~~~~~~~-~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (508)
.......+.|. +.++.|.+... ........++..++.++.|+++||+|||+.+..+.++..++.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~---------- 85 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG---------- 85 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH----------
Confidence 34556677885 44567876655 4677788888999999999999999999999999999888887777
Q ss_pred cccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCc
Q psy8697 357 NCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLP 436 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 436 (508)
... .+.+...+..++.+.+ .. ..+....++.|.+|
T Consensus 86 -------~~~------------------------------------~~~~~~~~~~~~~g~~-~~-~~~~~~~~~~~~~~ 120 (366)
T TIGR00886 86 -------LAV------------------------------------QSYSVLLLLRLFIGIA-GG-SFASCMPWISFFFP 120 (366)
T ss_pred -------HHh------------------------------------hhHHHHHHHHHHHHHh-ch-hhHhHHHHHHHhcC
Confidence 310 0122222232322222 22 23444588999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhHHHhh----------h-ccchhH-HHHHHHHHHhhheeEEEecc
Q psy8697 437 SYARGVCSGLMISYGYVCMFFMVKAFPFAIH----------S-SVIGTF-NVFGLVSFTLVGFVYFYLPE 494 (508)
Q Consensus 437 ~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~----------~-g~~~~~-~~~~~~~~~~~~~~~~~~~~ 494 (508)
+++|+++.++......+|..+++.+.+.+.. . +|.+.+ ...+++..+..++.+...+|
T Consensus 121 ~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 121 KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998888888888888776664 2 577777 43344444433333333333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-09 Score=89.65 Aligned_cols=134 Identities=21% Similarity=0.213 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCC
Q psy8697 307 LGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQV 386 (508)
Q Consensus 307 ~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (508)
..++.+++.++.+++.||+|||+.+..+.....++.+... ..
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~-----------------~~--------------------- 48 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA-----------------LS--------------------- 48 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH-----------------Hh---------------------
Confidence 4567788899999999999999999888888777776665 21
Q ss_pred CCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8697 387 PPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAI 466 (508)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~ 466 (508)
.+.+.......+.+.+.+ ...+....+..|.+|++.|+++.++.+....++..+++.+.+.+.
T Consensus 49 ----------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 49 ----------------SNITVLIIARFLQGFGAA-FALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred ----------------ccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 123333333333333333 334566688999999999999999999999999999999999999
Q ss_pred hh-ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 467 HS-SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 467 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
+. ++...+.+.+.+.++..+..+...||+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 112 QFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 88 888888888888777766666656653
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.4e-09 Score=107.99 Aligned_cols=149 Identities=13% Similarity=0.142 Sum_probs=106.4
Q ss_pred cccchhhhcHHHHHHH-hCCcchhh-HHHHHHHHHHHHHHHHHHHhhcc-cCCeeehhhhhhHHHHHHHHHhhccccccc
Q psy8697 278 TGVYPVIFYAMQLFKE-VGTEIDES-HALVFLGIIRFGMSVVTTVLARG-FGRKQLLIVSAAGLGVSSILLSSNLLMKST 354 (508)
Q Consensus 278 ~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~l~~~~~~~~~ 354 (508)
..++....+++.|+++ .|.+.+.. ..............+++|+++|| +|||+.+..+.++..++.+.+.
T Consensus 28 ~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~-------- 99 (489)
T PRK10207 28 FGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG-------- 99 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH--------
Confidence 3366777777777765 66655443 44444555566667799999999 9999999999999999988887
Q ss_pred cccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhcc
Q psy8697 355 FTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 434 (508)
+... ......+...+.+ .......|...+++.|.
T Consensus 100 ---------~~~~------------------------------------~~~ll~~~~~l~~-ig~g~~~~~~~~li~~~ 133 (489)
T PRK10207 100 ---------MSLL------------------------------------KPDLIFIALGTIA-VGNGLFKANPASLLSKC 133 (489)
T ss_pred ---------Hhcc------------------------------------chhHHHHHHHHHH-hccccccCCHHHHHHHh
Confidence 3110 1111222222222 22333445556899999
Q ss_pred Ccccc--hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHH
Q psy8697 435 LPSYA--RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLV 480 (508)
Q Consensus 435 ~p~~~--r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~ 480 (508)
+|++. |+.++++.+...++|..++|.+.|++.++ ||++.|.+.++.
T Consensus 134 ~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 134 YPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred cCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 98874 57799999999999999999999999998 999998876443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.5e-09 Score=107.79 Aligned_cols=154 Identities=10% Similarity=-0.023 Sum_probs=114.1
Q ss_pred hcccchhhhcHHHHHHH---hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcc-cCCeeehhhhhhHHHHHHHHHhhcccc
Q psy8697 277 FTGVYPVIFYAMQLFKE---VGTEIDE-SHALVFLGIIRFGMSVVTTVLARG-FGRKQLLIVSAAGLGVSSILLSSNLLM 351 (508)
Q Consensus 277 ~~~~~~~~~~~~~~~~~---~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~l~~~~~~ 351 (508)
-.+++....++|.++++ .|++... ........+...++.+++|+++|| +|||+.+..+..+.+++.+++.
T Consensus 23 ~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~----- 97 (475)
T TIGR00924 23 RFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA----- 97 (475)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-----
Confidence 33467778889988876 4665544 466777778889999999999999 8999999999999999888877
Q ss_pred ccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhh
Q psy8697 352 KSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMI 431 (508)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (508)
.. ...+...+...+.+.+ .....+...+++
T Consensus 98 ------------~~-------------------------------------~~~~~~~~~~~l~g~g-~g~~~~~~~~~~ 127 (475)
T TIGR00924 98 ------------MS-------------------------------------IYPDLIFYGLGTIAVG-SGLFKANPSSMV 127 (475)
T ss_pred ------------hc-------------------------------------ccHhHHHHHHHHHHhc-cccccCCHHHHH
Confidence 31 0222222222222222 222345556888
Q ss_pred hccCcccc---hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhh
Q psy8697 432 SELLPSYA---RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLV 485 (508)
Q Consensus 432 ~e~~p~~~---r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 485 (508)
+|.+|++. |+++.++.+...++|..++|.+.+.+.+. +|...|.+.++..+++.
T Consensus 128 a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 128 GKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL 185 (475)
T ss_pred HHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 99998754 88899999999999999999999999998 99988888776555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-08 Score=99.64 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=121.3
Q ss_pred HhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcch-hhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhh
Q psy8697 255 ILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEID-ESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIV 333 (508)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~ 333 (508)
.+.++.....++....+.. +...+.+++--.+++.+.... ........-.+.++.-++.+++++|+|+-+++..
T Consensus 367 ~~~s~~~llff~~av~mG~-----g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~l 441 (618)
T KOG3762|consen 367 VFASPHILLFFFVAVVMGA-----GVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYL 441 (618)
T ss_pred HhcCCCEEehhHHHHHHHH-----HHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeee
Confidence 6677665543333322222 233334444445566543222 2344555556677888889999999999999999
Q ss_pred hhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHH
Q psy8697 334 SAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFIL 413 (508)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (508)
++.+..+=++.+. . . +++|..+..=+
T Consensus 442 gLa~~~~Rf~~~S-----------------~-L------------------------------------~n~W~vLPiei 467 (618)
T KOG3762|consen 442 GLACNVGRFLYYS-----------------Y-L------------------------------------QNPWMVLPIEI 467 (618)
T ss_pred hhhHHHHHHHHHH-----------------H-h------------------------------------cCchheeeHHH
Confidence 9998888887777 3 1 25566655555
Q ss_pred HHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHH-HHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeE
Q psy8697 414 LYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISY-GYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 489 (508)
+-+...+..+..+. +|++...|++.|+++.++.... ..+|-.+|+++.|.+.+. +...+|.++++.+++..++..
T Consensus 468 lqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 468 LQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 55555566555554 9999999999999999998876 567888899999999999 888899988888877655433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=6e-08 Score=101.11 Aligned_cols=150 Identities=15% Similarity=0.252 Sum_probs=115.5
Q ss_pred HhhhcccccccCCccchhHHH-HHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHH---Hhc-CCcchHHHHHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTS-FVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLT---ILA-DPGNIELLYLS 115 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s-~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~---~~~-~~~~~~~l~~~ 115 (508)
.|.+.++.+ .+..+.+++.+ ...++..++.+++|+++||+|||+.+.++.++.+++.+.. +.. ++ .+.+.+.
T Consensus 246 ~~~l~~~~G-~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~--~~~l~~~ 322 (491)
T PRK11010 246 TTFLIRGVG-FDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKN--LYSMGAA 322 (491)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHH
Confidence 344445555 89999999874 6678999999999999999999998777666555544332 333 34 5566667
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
-+++.++.|...+ ..++..+..+++.+++..++.+...++|..+++.+++.+ ||+..|.+.++++++ .++....
T Consensus 323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~-~l~~~~~ 401 (491)
T PRK11010 323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVP-GLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH-HHHHHHH
Confidence 7777777777777 888999999999999999999999999988887777776 899999998888888 5555555
Q ss_pred CCCC
Q psy8697 191 APES 194 (508)
Q Consensus 191 l~es 194 (508)
++++
T Consensus 402 ~~~~ 405 (491)
T PRK11010 402 CRQT 405 (491)
T ss_pred HHhc
Confidence 5554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=103.40 Aligned_cols=152 Identities=11% Similarity=0.033 Sum_probs=109.0
Q ss_pred HHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccc
Q psy8697 287 AMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEY 365 (508)
Q Consensus 287 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 365 (508)
.|.+.++.|.+.+. ........++..++.++.|+++||+|||+.+..+..+..++.+... ..
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-----------------~~ 91 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML-----------------WV 91 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH-----------------Hh
Confidence 34455667776554 4667777888899999999999999999999988888877776666 31
Q ss_pred cccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHH
Q psy8697 366 LVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSG 445 (508)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 445 (508)
.+.+...+...+.+.+.+. ..+...+++.|.+|++.++...+
T Consensus 92 -------------------------------------~~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 133 (401)
T PRK11043 92 -------------------------------------ESAAQLLVLRFVQAVGVCS-AAVIWQALVIDRYPAQKANRVFA 133 (401)
T ss_pred -------------------------------------cCHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhcCcHHHHHHHH
Confidence 0222333323332222222 23344578889999998999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEec
Q psy8697 446 LMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLP 493 (508)
Q Consensus 446 ~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
..+....++..++|.+.+.+.+. +|+..|.+.+++.++..+..+...+
T Consensus 134 ~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 134 TIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKP 182 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99988999999999999999988 9998888888777766555444333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=104.99 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=128.3
Q ss_pred hhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccch--hHHHHHHHHHHHHHHHHHh--------cCCcchHH
Q psy8697 42 KYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRK--WSLILVCVPYIISSLLTIL--------ADPGNIEL 111 (508)
Q Consensus 42 ~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk--~~l~~~~~~~~i~~~l~~~--------~~~~~~~~ 111 (508)
.+..++.+ .+..+...+.-+..+...+|++++|++.||+|.| ++++.+++++.+..+...+ .++ -+.
T Consensus 306 i~a~~~lg-~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~--~~~ 382 (477)
T PF11700_consen 306 IYATEVLG-MSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKS--PWE 382 (477)
T ss_pred HHHHHhcC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCccc--HHH
Confidence 34444666 9999999999999999999999999999999999 8999888888666666555 566 889
Q ss_pred HHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHH
Q psy8697 112 LYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGL 185 (508)
Q Consensus 112 l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~ 185 (508)
+.+.-++.|++.|..++ ..++.+|..|+++.+...|++....-....+||++.+.+ +-|..+....++.++ .+
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~-gl 461 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLI-GL 461 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH-HH
Confidence 99999999999999999 999999999999999999999999999999999999888 578888888777777 55
Q ss_pred hhhhcCCC
Q psy8697 186 VLICFAPE 193 (508)
Q Consensus 186 ~~~~~l~e 193 (508)
++++.+++
T Consensus 462 ~ll~~v~~ 469 (477)
T PF11700_consen 462 ILLFFVDV 469 (477)
T ss_pred HHHhhccc
Confidence 56566655
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-08 Score=103.39 Aligned_cols=147 Identities=11% Similarity=0.049 Sum_probs=100.4
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc--cchhHH-HHHHHHHHHHHHHHHh--cCCcchHHHHH
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI--GRKWSL-ILVCVPYIISSLLTIL--ADPGNIELLYL 114 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~--Grk~~l-~~~~~~~~i~~~l~~~--~~~~~~~~l~~ 114 (508)
.+|.+.++..+.+..+.++..+.+.++..++.++.|+++||+ |||+.. .....+..++.++..+ ..+ .+...+
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~ 352 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGN--PTVDMA 352 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccC--hHHHHH
Confidence 455554543338888899999999999999999999999999 555432 2223333333333323 233 555555
Q ss_pred HHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHH-HHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 115 SKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGIL-LTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 115 ~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~-~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
..++.|.+...... ...+..|.+|+++||+++++.+....+|.. ++|.+.+.+ ||+..|++.++.+++..+...
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 353 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 55666654433333 455678999999999999999888778765 478777766 899999988887777444433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=103.67 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=107.7
Q ss_pred hhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccC
Q psy8697 284 IFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQS 362 (508)
Q Consensus 284 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 362 (508)
....+...++.+.+... ........+...+..++.|+++||+|||+++..+..+.+++.+...
T Consensus 23 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~---------------- 86 (393)
T PRK11195 23 LFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML---------------- 86 (393)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH----------------
Confidence 34445555666654433 4666677788889999999999999999999999988877766655
Q ss_pred ccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhh
Q psy8697 363 NEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGV 442 (508)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 442 (508)
.. ... .+... ..+.......|...+++.|.+|+++|++
T Consensus 87 -~~--------------------------------------~~~--~~~r~-l~G~~~a~~~pa~~a~i~~~~~~~~~~~ 124 (393)
T PRK11195 87 -FG--------------------------------------IHP--LLAYG-LVGIGAAAYSPAKYGILTELLPGEKLVK 124 (393)
T ss_pred -HH--------------------------------------HHH--HHHHH-HHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 20 111 22222 2333344456777799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 443 CSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 443 ~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
+.|+.+....++..+||.+.|.+.+..+...+.+.+.+.+++. +....+||.
T Consensus 125 a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~ 176 (393)
T PRK11195 125 ANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAA-LFNLFIPRL 176 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence 9999999999999999999999998765555555544443332 233445654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-08 Score=101.00 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=102.8
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHh
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD-PGNIELLYLSKICA 119 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~-~~~~~~l~~~r~l~ 119 (508)
.+++.++..+ ++.+.+++.+...++..++.+++++++||+|||+++..+..+.+++.++..+.+ + .+.+++..++.
T Consensus 245 ~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 321 (437)
T TIGR00792 245 QVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSN--LPLILVLIILA 321 (437)
T ss_pred hheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchh--HHHHHHHHHHH
Confidence 3444444332 455677888888999999999999999999999999999999888887777654 4 67778888999
Q ss_pred hcchhhHHH-HHHHhhhccC-------CCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 120 GIGGGMSTV-AMVYVSEICH-------ENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 120 G~~~g~~~~-~~~~i~e~~~-------~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
|++.+...+ ..++++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 322 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 322 GFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 9999998865 55679999999999999999999988877
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-08 Score=101.12 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=117.2
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-H
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-A 129 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~ 129 (508)
.+....|.+.+...+...++.+..|++.||+|||+.+.++..+.+++..+...+++ .+.+++.+++.|++.+.... .
T Consensus 251 ~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~ 328 (396)
T TIGR00882 251 QGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATT--ALEVVILKMLHAFEVPFLLVGC 328 (396)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899999999999999999999999999999999999998888888888 88889999999999888877 8
Q ss_pred HHHhhhccCCCCchhHHHH-HHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 130 MVYVSEICHENFRPAILCL-NSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 130 ~~~i~e~~~~~~rg~~~~~-~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
..+..+..+++.++...+. .+....+|..+++.+++.+ ||+..|.+.+++.++..++..
T Consensus 329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887766 6788899999999888888 899999999888887555443
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-09 Score=107.62 Aligned_cols=155 Identities=14% Similarity=0.045 Sum_probs=124.6
Q ss_pred hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcc
Q psy8697 294 VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNES 372 (508)
Q Consensus 294 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (508)
.+.+.+. ........+...+.+++.|++.||++|+.++.+|..+..++.+.-+ +.
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~-----------------fs------- 118 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG-----------------FS------- 118 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH-----------------HH-------
Confidence 4444443 4778888899999999999999999999999999999999998888 41
Q ss_pred cccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHH
Q psy8697 373 MRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGY 452 (508)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 452 (508)
...|..+++-. +.+..-.+..|+..++++|.+|.++|++.+++.+....
T Consensus 119 ------------------------------~~Fwq~~l~R~-~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ip 167 (493)
T KOG1330|consen 119 ------------------------------NHFWQVLLCRG-FVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIP 167 (493)
T ss_pred ------------------------------HHHHHHHHHHH-HhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcc
Confidence 13344444443 34444455778888999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhheeEEEeccCCCCChHHH
Q psy8697 453 VCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEI 503 (508)
Q Consensus 453 ~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (508)
+|..+|-.....+.+. .|++.|...+++.++..++..++.+|..++..++.
T Consensus 168 vGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 168 VGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV 220 (493)
T ss_pred cccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence 9999988888887777 49999999999999999988888887765444443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-08 Score=100.72 Aligned_cols=181 Identities=14% Similarity=0.087 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHhhcccchhhhcHHHHHH-HhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHH
Q psy8697 264 PLILLVILFTLQQFTGVYPVIFYAMQLFK-EVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVS 341 (508)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 341 (508)
+.+....+.+...+...+......+.+-+ +.|++.++ .....+..+...++++..|++.||+|.|+++..+.++..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444444444444444444444455444 46676555 45666777788888899999999999999999999888888
Q ss_pred HHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhh
Q psy8697 342 SILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAV 421 (508)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
.+... +..... .++.+..++.-.+.+.+ +.
T Consensus 114 ~~~~~-----------------~a~~~~--------------------------------~~s~~~lli~r~l~Gig-g~ 143 (462)
T PRK15034 114 CVWLG-----------------IAVQNP--------------------------------NTPFGIFIVIALLCGFA-GA 143 (462)
T ss_pred HHHHH-----------------HHHccc--------------------------------CCCHHHHHHHHHHHHHH-HH
Confidence 87776 311100 01223333333333332 33
Q ss_pred cchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHh-----h-------------h-ccchhHHHHHHHHH
Q psy8697 422 GVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAI-----H-------------S-SVIGTFNVFGLVSF 482 (508)
Q Consensus 422 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~-----~-------------~-g~~~~~~~~~~~~~ 482 (508)
..+.....+++.+|+++||++.|+....+++|..+++.+.+.+. + . +++...++.+.+.+
T Consensus 144 -~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~i 222 (462)
T PRK15034 144 -NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLA 222 (462)
T ss_pred -hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHH
Confidence 44555688999999999999999998888888877776666544 1 1 34455556666666
Q ss_pred HhhheeEEEeccC
Q psy8697 483 TLVGFVYFYLPET 495 (508)
Q Consensus 483 ~~~~~~~~~~~~~ 495 (508)
+..++.+++.++.
T Consensus 223 v~~i~~~~~~~~~ 235 (462)
T PRK15034 223 IATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHhCCCc
Confidence 6655555555543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-08 Score=100.02 Aligned_cols=134 Identities=13% Similarity=0.048 Sum_probs=113.1
Q ss_pred hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcch
Q psy8697 44 LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGG 123 (508)
Q Consensus 44 i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~ 123 (508)
..++.+ .++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+.+++ .+.+++..++.|++.
T Consensus 231 ~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~ 307 (382)
T PRK11128 231 YWQAAG-YSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTA--LPWLIVIQILHCGTF 307 (382)
T ss_pred HHHHCC-CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHH
Confidence 334555 88888999999999999999999999999999999999999999998888888888 999999999999999
Q ss_pred hhHHH-HHHHhhhccCCCCchhHHHHHH-HHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q psy8697 124 GMSTV-AMVYVSEICHENFRPAILCLNS-VFISCGILLTTILNLYL----DWRSLSYCFLALVLI 182 (508)
Q Consensus 124 g~~~~-~~~~i~e~~~~~~rg~~~~~~~-~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~ 182 (508)
+...+ ...++.+. +++++++..+..+ ....+|..+||.+++.+ ++ ..++..+++.++
T Consensus 308 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 308 TVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 99988 88998887 5667788888876 55678888999998888 55 456666666555
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-08 Score=103.68 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=128.9
Q ss_pred HHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy8697 39 VYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKIC 118 (508)
Q Consensus 39 ~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l 118 (508)
..+|.+.++..+.++...|++.+...+|..+|++..+.+.+|+++++.+..+.++++++.+..+++++ .+..++.-++
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~--~~~~~~~l~l 316 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS--FWLALIALFL 316 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH--HHHHHHHHHH
Confidence 34677766655588999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhh
Q psy8697 119 AGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 119 ~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 187 (508)
.|++.....+ ..+.+-+..|++.|||.++++++....+..+|.++.+.+ |-+..+.+.++..++..++.
T Consensus 317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 999999999999999999999999888888888888887 77888877776655534433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-08 Score=91.38 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=122.5
Q ss_pred hhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCc-----ch
Q psy8697 35 FYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPG-----NI 109 (508)
Q Consensus 35 ~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~-----~~ 109 (508)
+.++.+-|.+.+..+ +|.+|...+.....+|..+| ++.|.+.|++|++.++.+|.+...+|..+...+-+. ++
T Consensus 19 Y~Fs~yS~~Lk~~l~-~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~ 96 (250)
T PF06813_consen 19 YTFSAYSPQLKSRLG-YSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPV 96 (250)
T ss_pred cchhhhhHHHHHHhC-CCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccch
Confidence 335667788888888 99999999999999999875 889999999999999999999999999887765322 37
Q ss_pred HHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh---h-hHHHHHHHHHHHHHHH
Q psy8697 110 ELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL---D-WRSLSYCFLALVLISG 184 (508)
Q Consensus 110 ~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~-wr~~f~~~~~~~~~~~ 184 (508)
|.+.+..++.|.+.+...+ +.....+.+| ++||.+.++.-...+++..+-..+...+ + -+..+.....+.++ .
T Consensus 97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v-~ 174 (250)
T PF06813_consen 97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVV-C 174 (250)
T ss_pred HHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-H
Confidence 8888888899888877777 7777778887 5899999999999999998877777666 3 34443333334444 5
Q ss_pred HhhhhcCCCCc
Q psy8697 185 LVLICFAPESP 195 (508)
Q Consensus 185 ~~~~~~l~esp 195 (508)
++..++++..|
T Consensus 175 l~~~~~vr~~~ 185 (250)
T PF06813_consen 175 LVAMFFVRPVP 185 (250)
T ss_pred HHHhhheeccC
Confidence 55556665544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=105.12 Aligned_cols=152 Identities=12% Similarity=0.094 Sum_probs=102.6
Q ss_pred cccchhhhcHHHHHHH-hCCcchhh-HHHHHHHHHHHHHHHHHHHhhcc-cCCeeehhhhhhHHHHHHHHHhhccccccc
Q psy8697 278 TGVYPVIFYAMQLFKE-VGTEIDES-HALVFLGIIRFGMSVVTTVLARG-FGRKQLLIVSAAGLGVSSILLSSNLLMKST 354 (508)
Q Consensus 278 ~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~l~~~~~~~~~ 354 (508)
.+++.+..+.+.++++ .|++.... ..............+++|++.|| +|||+.+..+.++.+++..++.
T Consensus 35 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~-------- 106 (500)
T PRK09584 35 FGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVA-------- 106 (500)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH--------
Confidence 3356677788888855 77765443 33333333334445689999999 5999999999999888877776
Q ss_pred cccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhcc
Q psy8697 355 FTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL 434 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 434 (508)
.... ..+...+...+.+.+.+. ..+...++..|.
T Consensus 107 ---------~~~~------------------------------------~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~ 140 (500)
T PRK09584 107 ---------WSGH------------------------------------DAGIVYMGMATIAVGNGL-FKANPSSLLSTC 140 (500)
T ss_pred ---------Hhcc------------------------------------cHHHHHHHHHHHHHhhhc-ccCCHHHHHHHh
Confidence 3100 112222222333333222 344555889999
Q ss_pred Ccccc--hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHH
Q psy8697 435 LPSYA--RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFT 483 (508)
Q Consensus 435 ~p~~~--r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~ 483 (508)
+|++. |+.+.++.+...++|..++|.+.|++.+. ||++.|.+.++...+
T Consensus 141 f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 141 YEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred cCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 98643 45678888999999999999999999998 999999887654444
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.3e-08 Score=102.86 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=111.4
Q ss_pred hHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhc
Q psy8697 58 PTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEI 136 (508)
Q Consensus 58 ~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~ 136 (508)
+......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++...+...+.-++.+++.+...+ ...+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445566777888999999999999999999999999998888887761125556666777788888888 99999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy8697 137 CHENFRPAILCLNSVFISCGILLTTILNLYL--DWRSLSYCFLALVLISGLVLICFAPESP 195 (508)
Q Consensus 137 ~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~~l~esp 195 (508)
+|++.|++++++.+....+|.+++|.+.+.. ++..++.+.++..++ ..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALL-AGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHcCcCCC
Confidence 9999999999999999999999999998833 667788888877777 455566788874
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=116.07 Aligned_cols=147 Identities=17% Similarity=0.128 Sum_probs=121.0
Q ss_pred hhcccccccCCc-cchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhc
Q psy8697 43 YLTRHYIVMFGS-HFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGI 121 (508)
Q Consensus 43 ~i~~~~~~~s~~-~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~ 121 (508)
++.+.++ .+.. +.|++.+...++..++++++|+++||+++|+++.++.++.+++.++..+..+ .+.+++..++.|+
T Consensus 258 ~~~~~~g-~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~ 334 (1146)
T PRK08633 258 YAKEVLG-LDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS--LASVLVLFFLFGF 334 (1146)
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHH
Confidence 3344455 7888 8999999999999999999999999999999999999999888888888888 8999999999999
Q ss_pred chhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhcCC
Q psy8697 122 GGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 122 ~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~l~ 192 (508)
+.+...+ ..+++.+..|+++||+++++.+....+|.++++.++..+ ++...+++.+.+.++..+.....+|
T Consensus 335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1146)
T PRK08633 335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLP 411 (1146)
T ss_pred HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999988 999999999999999999999999999998888777765 4555666655554443333333333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=106.32 Aligned_cols=141 Identities=15% Similarity=0.033 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccc
Q psy8697 301 SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTW 380 (508)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (508)
........++.+++.++.|++.||+|||+.+..+.++.+++.++.. ....
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-----------------~~~~------------- 128 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIP-----------------WAAG------------- 128 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHH-----------------HHHH-------------
Confidence 3566777788999999999999999999999988888777766654 2100
Q ss_pred cccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHH
Q psy8697 381 HNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVK 460 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~ 460 (508)
...+..++.-+ +.+.......+....++.|.+|++.|+++.|+.+....+|..+++.
T Consensus 129 ----------------------~~~~~l~~~r~-~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 185 (465)
T TIGR00894 129 ----------------------GGIALVVFCRV-IQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLP 185 (465)
T ss_pred ----------------------cCchHHHHHHH-HHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 02222222233 3333344455666789999999999999999999999999999999
Q ss_pred HhHHHhhh--ccchhHHHHHHHHHHhhheeEEEecc
Q psy8697 461 AFPFAIHS--SVIGTFNVFGLVSFTLVGFVYFYLPE 494 (508)
Q Consensus 461 ~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
+.+.+.+. +|+..|.+.++..++..++.+.+.+|
T Consensus 186 l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 186 ISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 99999876 89999998888777665555544443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-08 Score=97.82 Aligned_cols=161 Identities=13% Similarity=-0.019 Sum_probs=108.3
Q ss_pred hhhcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhccc-----CCeeeh-hhhhhHHHHHHHHHhhccccccccc
Q psy8697 283 VIFYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGF-----GRKQLL-IVSAAGLGVSSILLSSNLLMKSTFT 356 (508)
Q Consensus 283 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----grr~~l-~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (508)
...-.|.+.++.|.+.++.......++...+ .++.|+++||+ |||+.+ ..+.++.+++...+.
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~---------- 75 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS---------- 75 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH----------
Confidence 4456788888888876653222222444333 88999999998 888864 566666666665665
Q ss_pred cccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCc
Q psy8697 357 NCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLP 436 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 436 (508)
+.... ...+.......+. ........+...+++.|.+|
T Consensus 76 -------~~~~~----------------------------------~~l~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~~ 113 (356)
T TIGR00901 76 -------FLVPS----------------------------------TDLPLLAGLAFLI-AFFSATQDIALDAWRLEILS 113 (356)
T ss_pred -------cCCcc----------------------------------hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC
Confidence 31110 0222222222222 23333344555689999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c--------cchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 437 SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S--------VIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 437 ~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
+++|+.+.++......+|..+++.+.+.+.+. + |+..|++.+++.++..+..++..||.+
T Consensus 114 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 114 DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999988877 7 888998888877776655454456643
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=9e-08 Score=98.37 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=91.4
Q ss_pred HHHhhhccc-ccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHH-H---HhcCCcchHHHH
Q psy8697 39 VYLKYLTRH-YIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLL-T---ILADPGNIELLY 113 (508)
Q Consensus 39 ~~~~~i~~~-~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l-~---~~~~~~~~~~l~ 113 (508)
...|.+.++ .+ .+..+.++......++..++.+++|+++||+|||++++.+..+..+..+. . ...++ +....
T Consensus 259 ~~~p~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 335 (434)
T PRK15075 259 VYTPTFGKTVLH-LSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS--FARML 335 (434)
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc--hHHHH
Confidence 335555444 45 78888888888899999999999999999999999888765544332221 1 12233 55555
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHH-HHHHHHHHHHHHHHHhh
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNS-VFISCGILLTTILNLYL 167 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~-~~~~lG~~~g~~l~~~l 167 (508)
+..++.|++.+...+ ...++.|.+|+++|+...++.. .+..++..++|.+.+.+
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 336 AVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 556677788887777 7789999999999999999854 34445566788877766
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=97.92 Aligned_cols=150 Identities=12% Similarity=0.087 Sum_probs=96.0
Q ss_pred HHhhhc-ccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHH--h--cCCcchHHHHH
Q psy8697 40 YLKYLT-RHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTI--L--ADPGNIELLYL 114 (508)
Q Consensus 40 ~~~~i~-~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~--~--~~~~~~~~l~~ 114 (508)
.+|.+. ++.+ .+..+.+...++..++..+++++.|+++||+|||+.+..+..+.++...... . .++ ....+.
T Consensus 265 ~lp~~l~~~~g-~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 341 (432)
T PRK10406 265 YMQKYLVNTAG-MHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSS--PYAAFG 341 (432)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHH
Confidence 345443 4445 7888888888888888899999999999999999988776655443332221 1 222 332222
Q ss_pred HHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHH-HHHHHHHHHHhh---h-hHHHHHHHHHHHHHHHHhhh
Q psy8697 115 SKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISC-GILLTTILNLYL---D-WRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 115 ~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~l-G~~~g~~l~~~l---~-wr~~f~~~~~~~~~~~~~~~ 188 (508)
.-.+.+++.+...+ ...+++|.+|++.|+.++|+.+....+ .....|.+...+ + |...++..++..++ ..+..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i-~~~~~ 420 (432)
T PRK10406 342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVV-AFLVS 420 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHH
Confidence 22333344445555 778899999999999999998765443 233466666655 3 55566655555555 44444
Q ss_pred hcCCC
Q psy8697 189 CFAPE 193 (508)
Q Consensus 189 ~~l~e 193 (508)
+++++
T Consensus 421 ~~l~~ 425 (432)
T PRK10406 421 LMLHR 425 (432)
T ss_pred HHhhh
Confidence 44544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.4e-08 Score=98.03 Aligned_cols=155 Identities=11% Similarity=-0.028 Sum_probs=110.9
Q ss_pred hhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccc
Q psy8697 282 PVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAI 360 (508)
Q Consensus 282 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 360 (508)
......|.+.++.|.+..+ ........++..++++..+++.||+|||+.+..+..+.+++.++..
T Consensus 21 ~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~-------------- 86 (410)
T TIGR00885 21 ITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW-------------- 86 (410)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH--------------
Confidence 3345667777778876655 4777788889999999999999999999999999999998887765
Q ss_pred cCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccch
Q psy8697 361 QSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYAR 440 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 440 (508)
..... .+.+..+...++.+.+.+.. .+....++.+..|++.|
T Consensus 87 ---~~~~~----------------------------------~~~~~~l~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~ 128 (410)
T TIGR00885 87 ---PAAEI----------------------------------MNYTLFLVGLFILTAGLGFL-ETAANPYILVMGPESTA 128 (410)
T ss_pred ---HHHhh----------------------------------ccHHHHHHHHHHHHhhHHHH-HhhhhHHHHHHCCHhHH
Confidence 21110 02233333333333333332 33334778888899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHhhh---------------------------ccchhHHHHHHHHHHhhhee
Q psy8697 441 GVCSGLMISYGYVCMFFMVKAFPFAIHS---------------------------SVIGTFNVFGLVSFTLVGFV 488 (508)
Q Consensus 441 ~~~~g~~~~~~~~g~~i~~~~~g~l~~~---------------------------g~~~~~~~~~~~~~~~~~~~ 488 (508)
++..++.+....+|..++|.+.+.+... +|+.+|.+.+++.++..++.
T Consensus 129 ~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 129 TRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877422 47778888777666654443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-07 Score=96.82 Aligned_cols=127 Identities=12% Similarity=0.135 Sum_probs=99.0
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhh
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAG 120 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G 120 (508)
.+++.++..+.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.++.+++.+++..++.|
T Consensus 251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g 330 (448)
T PRK09848 251 SLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIAS 330 (448)
T ss_pred heeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 45444443335544444444444677888999999999999999999999999888888877755222777778888999
Q ss_pred cchhhHHH-HHHHhhhccCCC-------CchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 121 IGGGMSTV-AMVYVSEICHEN-------FRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 121 ~~~g~~~~-~~~~i~e~~~~~-------~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
+|.+...+ ..+..+|..+.+ ++|...+..+....+|..+|+.+.+.+
T Consensus 331 ~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 331 IGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999988754 458999999999999999998887765
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=96.88 Aligned_cols=166 Identities=12% Similarity=0.088 Sum_probs=115.7
Q ss_pred hhcccchhhhcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhccc-----CCee-ehhhhhhHHHHHHHHHhhcc
Q psy8697 276 QFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGF-----GRKQ-LLIVSAAGLGVSSILLSSNL 349 (508)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----grr~-~l~~~~~~~~~~~~~l~~~~ 349 (508)
|.........-.|.++++.|++.++--........ .+..++.|+++||+ |||+ .+..+..+.+++...+.
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~--- 86 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA--- 86 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH---
Confidence 34445566778999999999877664222333333 57889999999999 7775 67777777777777766
Q ss_pred ccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHh
Q psy8697 350 LMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWT 429 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (508)
+.... ...+.......+. ..+.....+...+
T Consensus 87 --------------~~~~~----------------------------------~~~~~l~~~~~~~-~~~~~~~~~~~~a 117 (402)
T PRK11902 87 --------------FCPPH----------------------------------AALWPLAGLAVLV-AFLSASQDIVFDA 117 (402)
T ss_pred --------------hcCcc----------------------------------chHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 32110 1223232232333 3344445566679
Q ss_pred hhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 430 MISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 430 ~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
++.|..|+++|+++.++......+|..+++.+.+.+.+. ||+..|++.+++.++..+. .+..||+
T Consensus 118 l~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~ 184 (402)
T PRK11902 118 YSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEP 184 (402)
T ss_pred HHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 999999999999999999999999999999999998884 8999999888877665443 2345554
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=95.93 Aligned_cols=139 Identities=13% Similarity=-0.013 Sum_probs=106.2
Q ss_pred HhhhcccccccCCccchhHHHHHH-HHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh------cCCcchHHHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVI-ITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL------ADPGNIELLY 113 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~-lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~------~~~~~~~~l~ 113 (508)
.+.+.+|.+ .++++.|++.+... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++ ...+.
T Consensus 231 ~~~~l~~~G-~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 307 (390)
T TIGR02718 231 SKLYLVDAG-WPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPG--IAVAW 307 (390)
T ss_pred hhHHHHhcC-CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCc--HHHHH
Confidence 333445555 89999999988876 466778899999999999999988877665333332221 123 44455
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCC-CCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHE-NFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLI 182 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~-~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~ 182 (508)
....+.+++.+...+ ..+...+..++ +++++.+++.+...++|..+||.+++.+ ||+..|++.+++.++
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~ 382 (390)
T TIGR02718 308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVL 382 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 556667777888877 77887777776 8899999999999999999999999987 788899888777766
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=99.32 Aligned_cols=145 Identities=10% Similarity=-0.050 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccc
Q psy8697 301 SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTW 380 (508)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (508)
........++.+++.++.+++.||+|||+.+..+.++..++.++.. ...... .
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~-----------------~~~~~~-~--------- 111 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASG-----------------LSPGSS-P--------- 111 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-----------------HccCcc-c---------
Confidence 3566677788999999999999999999999988888888877666 311100 0
Q ss_pred cccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHH
Q psy8697 381 HNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVK 460 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~ 460 (508)
....+...+.-++.+.+.+. ..+....++.|.+|++.|+++.++.+....+|..+++.
T Consensus 112 ---------------------~~~~~~~~~~r~l~G~~~g~-~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~ 169 (502)
T TIGR00887 112 ---------------------KSVMATLCFWRFWLGVGIGG-DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI 169 (502)
T ss_pred ---------------------chHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00112333333333433333 34556699999999999999999999999999999888
Q ss_pred HhHHHhh------------------------hccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 461 AFPFAIH------------------------SSVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 461 ~~g~l~~------------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
+...+.. .+|+..+.+.++..++.. +..+++||+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~-~~~~~lpES 227 (502)
T TIGR00887 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL-YFRLTIPET 227 (502)
T ss_pred HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH-HHHHhCCCC
Confidence 8765432 157777766555555443 334567886
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.3e-08 Score=94.04 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=130.1
Q ss_pred cccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhH
Q psy8697 47 HYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMS 126 (508)
Q Consensus 47 ~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~ 126 (508)
+++ ++..+..++.....+..++|++++|++.||+|.|+++..++++..+..+...+... -..+.+.-.+.|.+.|..
T Consensus 282 ~~g-ls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~--~~~f~i~gll~g~s~G~~ 358 (438)
T COG2270 282 DLG-LSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG--ELDFWILGLLVGTSLGGA 358 (438)
T ss_pred HcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHhcchH
Confidence 666 99999999999999999999999999999999999999999999999998888888 788888899999999999
Q ss_pred HH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy8697 127 TV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICFAPES 194 (508)
Q Consensus 127 ~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~l~es 194 (508)
+. +.+|.++..|+++-++.+|+++...-.+..+||.+-+.+ +-|.-+....++..+ .++....+|+.
T Consensus 359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~i-Gl~~L~~v~~~ 431 (438)
T COG2270 359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLI-GLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hHhhEEeecCC
Confidence 99 999999999999999999999999999999999999888 678777777777766 66666677764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-08 Score=102.57 Aligned_cols=148 Identities=16% Similarity=0.040 Sum_probs=104.8
Q ss_pred hcHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCcc
Q psy8697 285 FYAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNE 364 (508)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 364 (508)
.-.+.+..+.|-+.+..+......+...++.++.|.++|.+|||..++.+.++..++.++.+ .
T Consensus 65 ~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a-----------------t 127 (599)
T PF06609_consen 65 SILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA-----------------T 127 (599)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh-----------------c
Confidence 33456667777666666777777888889999999999999999999999999999998888 3
Q ss_pred ccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHH
Q psy8697 365 YLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCS 444 (508)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 444 (508)
. .+....+....+.+.+ .+...+....++|+.|.+.|..+.
T Consensus 128 A-------------------------------------~~~~~~iag~~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~ 168 (599)
T PF06609_consen 128 A-------------------------------------QNMNTFIAGMVLYGVG--AGVQELAALAISELVPNKWRGLGL 168 (599)
T ss_pred C-------------------------------------CcHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcccchhhhHh
Confidence 1 1222333334444333 233334456789999999998887
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhee
Q psy8697 445 GLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFV 488 (508)
Q Consensus 445 g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 488 (508)
++.....-....+++.+...+... +|+|.|++.++...++.+..
T Consensus 169 ~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 169 AIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 776655544445666666665555 89999988887766665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-08 Score=98.16 Aligned_cols=145 Identities=15% Similarity=0.114 Sum_probs=105.3
Q ss_pred HHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhh----cccchhHHHH-HHHHHHH
Q psy8697 22 RYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMD----YIGRKWSLIL-VCVPYII 96 (508)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~D----r~Grk~~l~~-~~~~~~i 96 (508)
....+.-.+|..-.. +++++..+.+ ++....+.+--...+...+.+++.|..+| ||||||.++. +.....+
T Consensus 39 ~ia~Gvqf~wA~els---y~tPyl~~lG-vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~ 114 (498)
T KOG0637|consen 39 SIAAGVQFGWALELS---YLTPYLQSLG-VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAV 114 (498)
T ss_pred HHHHHHHHHHHHHhc---cccHHHHHcC-CCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHH
Confidence 334444446655432 2334445555 78888888888888888999999999999 5899887665 5666677
Q ss_pred HHHHHHhcCCc---------------chHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchh-HHHHHHHHHHHHHHH
Q psy8697 97 SSLLTILADPG---------------NIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPA-ILCLNSVFISCGILL 159 (508)
Q Consensus 97 ~~~l~~~~~~~---------------~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~-~~~~~~~~~~lG~~~ 159 (508)
+.++..++.+. ....++++--+.-++.-.... +.+++.|...++++.+ +.+++..+.++|..+
T Consensus 115 ~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvL 194 (498)
T KOG0637|consen 115 SLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVL 194 (498)
T ss_pred HHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhccee
Confidence 77777777651 023344445555566666777 9999999998777766 999999999999999
Q ss_pred HHHHHHhhhhH
Q psy8697 160 TTILNLYLDWR 170 (508)
Q Consensus 160 g~~l~~~l~wr 170 (508)
|..++.+.+|+
T Consensus 195 GY~~g~y~~~~ 205 (498)
T KOG0637|consen 195 GYALGSYLGLY 205 (498)
T ss_pred eeecccccCce
Confidence 99999877554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-08 Score=96.84 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=118.1
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
++.+....+.+-++.+++.++ .....+..+.+.+.+++-|++.||+|.|++...+.++..+-.+.+.
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~------------ 97 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLA------------ 97 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHH------------
Confidence 344444444554667777666 4667777788889999999999999999999999999988888888
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
+....+ +.|..+++-++.+ .+.+.......++++.+|++
T Consensus 98 -----~a~~~~----------------------------------~~~~ll~~gll~G--~~GasFav~m~~~s~~fP~~ 136 (417)
T COG2223 98 -----FAVTYP----------------------------------STWQLLVIGLLLG--LAGASFAVGMPNASFFFPKE 136 (417)
T ss_pred -----HHccCC----------------------------------chHHHHHHHHHHh--cccceehcccccccccCChh
Confidence 432221 2233443333332 23333455568999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c---cchhHHHHHHHHHHhhheeEEEec
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S---VIGTFNVFGLVSFTLVGFVYFYLP 493 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
.+|.+.|+.. .+++|..+...+.|.+... + |+....+.....++..+..++...
T Consensus 137 ~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 137 KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred hhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999 9999999999999999988 7 777777777777776666666554
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=95.96 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCccccccccccc
Q psy8697 302 HALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWH 381 (508)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (508)
.....+++.+++.+...|.++||+|||+++..+.+..++..++.+ .
T Consensus 72 flGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~-----------------~----------------- 117 (451)
T KOG2615|consen 72 FLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWA-----------------L----------------- 117 (451)
T ss_pred hHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH-----------------H-----------------
Confidence 567778899999999999999999999999999999999888887 3
Q ss_pred ccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy8697 382 NEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKA 461 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~ 461 (508)
+......+..=..++.+. +...+..++++|++++++|+.+++.++....+|.++||.+
T Consensus 118 ---------------------S~~F~afv~aR~l~Gi~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmI 175 (451)
T KOG2615|consen 118 ---------------------SRNFAAFVLARFLGGIFK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMI 175 (451)
T ss_pred ---------------------HHHHHHHHHHHHhhhhcc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchh
Confidence 122212222123333333 3444556999999999999999999999999999999999
Q ss_pred hHHHhh
Q psy8697 462 FPFAIH 467 (508)
Q Consensus 462 ~g~l~~ 467 (508)
.|++..
T Consensus 176 Ggyla~ 181 (451)
T KOG2615|consen 176 GGYLAQ 181 (451)
T ss_pred hhHHHh
Confidence 999987
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-07 Score=93.85 Aligned_cols=170 Identities=14% Similarity=0.058 Sum_probs=124.1
Q ss_pred HhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy8697 24 LHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL 103 (508)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~ 103 (508)
.........+......+...+-++-+ ++..+..+..........++.+++..+.||+|||+.++.+..++.+..+++..
T Consensus 276 ~v~~~qq~sGi~ai~~Yst~i~~~aG-~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~ 354 (485)
T KOG0569|consen 276 VVSFAQQFSGINAIFFYSTSIFKTAG-FTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSI 354 (485)
T ss_pred HHHHHHHhcCcceeHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 33333333333332334455666666 88899999999999999999999999999999999999999999998888776
Q ss_pred cCCc--ch-----HHHHHHHHHhhcchhhH-HH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhH
Q psy8697 104 ADPG--NI-----ELLYLSKICAGIGGGMS-TV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWR 170 (508)
Q Consensus 104 ~~~~--~~-----~~l~~~r~l~G~~~g~~-~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr 170 (508)
.... .. +..+++.++..++.+.. .| ..-+.+|.+|++.|+.+.++......+..++-...-..+ |=
T Consensus 355 ~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~- 433 (485)
T KOG0569|consen 355 ALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP- 433 (485)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 5321 01 12234444444443333 44 888999999999999999998887777776655544444 33
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCc
Q psy8697 171 SLSYCFLALVLISGLVLICFAPESP 195 (508)
Q Consensus 171 ~~f~~~~~~~~~~~~~~~~~l~esp 195 (508)
+.|+...+++++..+..++++|||.
T Consensus 434 ~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 434 YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 7788888888888888899999985
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.5e-08 Score=110.69 Aligned_cols=140 Identities=13% Similarity=0.036 Sum_probs=113.6
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc----------------
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA---------------- 104 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~---------------- 104 (508)
+|.+.++..+.++.+.|++.+.+.+|..+++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 248 ~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 327 (1140)
T PRK06814 248 LPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV 327 (1140)
T ss_pred hHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhh
Confidence 4554444333889999999999999999999999999999888777666666666655544443
Q ss_pred ----CCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHH
Q psy8697 105 ----DPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSY 174 (508)
Q Consensus 105 ----~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~ 174 (508)
.+ .+.++++-++.|++.+...+ ..+++.+.+|+++||+++|..+....+|..+++++.+.+ ++...++
T Consensus 328 ~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~ 405 (1140)
T PRK06814 328 FLSKRH--GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL 405 (1140)
T ss_pred hhcccc--cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 55 78888899999999999999 999999999999999999999999999999999988877 4566666
Q ss_pred HHHHHHHH
Q psy8697 175 CFLALVLI 182 (508)
Q Consensus 175 ~~~~~~~~ 182 (508)
+.+++.++
T Consensus 406 ~~~~~~~~ 413 (1140)
T PRK06814 406 FIALANLI 413 (1140)
T ss_pred HHHHHHHH
Confidence 55554444
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=96.82 Aligned_cols=163 Identities=8% Similarity=0.026 Sum_probs=104.1
Q ss_pred cchhhhcHHHHHHHhCCcchhh-HHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDES-HALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
.+.+..+.+.+.++.|++..+. ..... +.......++.|++.||+|+|+++.++.++..++.++.+
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~a------------ 109 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFA------------ 109 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH------------
Confidence 5667788888878888865543 33322 223334566789999999999999999999999998888
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
+..... -..+.+...+...+.+.+.+ ...+.....+.+.+| +
T Consensus 110 -----la~~~~-------------------------------i~~s~~~l~l~r~l~G~G~~-~~~~~~~~~i~~~Fp-~ 151 (591)
T PTZ00207 110 -----LTFQEV-------------------------------IEGSVVRLSVYNGLMTLGCM-LFDLGAVVTVLSVFP-S 151 (591)
T ss_pred -----HHhccc-------------------------------ccCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCh-h
Confidence 311100 00122333333333332222 223334466778887 6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeEEEec
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLP 493 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
.||.+.|+......+|+.+.+.+...+...++...|++.+++.++..++.+.+++
T Consensus 152 ~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 152 NRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 7899999999999999987555555444445566777777777766555554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-07 Score=92.94 Aligned_cols=189 Identities=13% Similarity=0.036 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhc----ccCCeeehhhh-hhHH
Q psy8697 265 LILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLAR----GFGRKQLLIVS-AAGL 338 (508)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~d----r~grr~~l~~~-~~~~ 338 (508)
++.........|+. +.....+.+.++++.|.+... ........+..++..++.|+++| |+|||+..+.+ ....
T Consensus 6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 44455555555555 556677788888888886654 36667777888999999999999 59999988764 5555
Q ss_pred HHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCC-cc---hHHHHHHHH
Q psy8697 339 GVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLS-SD---WLSLLFILL 414 (508)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~ 414 (508)
.+++.++. ...... + ... ++.+.. .. +..++.+.+
T Consensus 85 ~~~l~ll~-----------------~~~~~~-----------~-----------~~~--~~~~~~~~~~~i~~~~i~~~l 123 (477)
T TIGR01301 85 AFAVILIG-----------------FAADIG-----------H-----------LFG--DNLDKKTKPRAIIVFVVGFWI 123 (477)
T ss_pred HHHHHHHH-----------------hCchhh-----------h-----------hcc--ccccccchhHHHHHHHHHHHH
Confidence 56555555 211100 0 000 000000 11 122222223
Q ss_pred HHHHHhhcchhhhHhhhhccCcccch--hhHHHHHHHHHHHHHHHHHHHhHHHh--hh--------------ccchhHHH
Q psy8697 415 YVFFSAVGVIVIPWTMISELLPSYAR--GVCSGLMISYGYVCMFFMVKAFPFAI--HS--------------SVIGTFNV 476 (508)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~~g~~i~~~~~g~l~--~~--------------g~~~~~~~ 476 (508)
.....+....|. .++++|..|+++| +.+.+..+....+|+.+++.+.+... +. +....|.+
T Consensus 124 ld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i 202 (477)
T TIGR01301 124 LDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLI 202 (477)
T ss_pred HHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHH
Confidence 333344334444 5999999998865 57999999999999999998887652 11 34567888
Q ss_pred HHHHHHHhhheeEEEeccCC
Q psy8697 477 FGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~ 496 (508)
.+++.+++.++..+..+|..
T Consensus 203 ~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 203 DIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHeeeeeccC
Confidence 88888888888888888864
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.4e-07 Score=90.35 Aligned_cols=151 Identities=21% Similarity=0.333 Sum_probs=121.5
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc-CCcchHHH----HHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA-DPGNIELL----YLS 115 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~-~~~~~~~l----~~~ 115 (508)
..++ ++.++.+....+.+.++..++-...-...+++..|+|.|+++.++.+.+++=..+.+.. ++ .+.. ++.
T Consensus 231 ~~yl-~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~--~~~~~~~~~l~ 307 (400)
T PF03825_consen 231 SIYL-QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDP--WPFIVALQLLG 307 (400)
T ss_pred HHHH-HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHH
Confidence 3344 44343566677877788888888888899999999999999999999999999999887 44 4433 334
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHH-HHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHH
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSV-FISCGILLTTILNLYL----------DWRSLSYCFLALVLIS 183 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~-~~~lG~~~g~~l~~~l----------~wr~~f~~~~~~~~~~ 183 (508)
..++|+.-+.... +..|+.+..|++.|+++.++++. ..++|..+|..+++++ .|...+.+.+++.++.
T Consensus 308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~ 387 (400)
T PF03825_consen 308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVI 387 (400)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 5679999999999 99999999999999999999876 4689999999999988 4667777777777776
Q ss_pred HHhhhhcCCCC
Q psy8697 184 GLVLICFAPES 194 (508)
Q Consensus 184 ~~~~~~~l~es 194 (508)
.++.+++.+|+
T Consensus 388 ~~~f~~~fk~~ 398 (400)
T PF03825_consen 388 LVLFVILFKPK 398 (400)
T ss_pred HHHHHhhccCC
Confidence 66666666664
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.9e-08 Score=99.52 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=142.4
Q ss_pred HHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhccc--chhHHHHHHHHHHHHH
Q psy8697 21 VRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIG--RKWSLILVCVPYIISS 98 (508)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~G--rk~~l~~~~~~~~i~~ 98 (508)
+.+..+......+.......+|...++.+ .++.+.+.+.++..+...++.+..|+++|+.. ++.+..+++++.+++.
T Consensus 301 l~~~~~~~~~~~g~~~p~~~l~~~~~~~g-~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 301 LLLALSNLFAYLGFNVPFVYLPSYAKSLG-LSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 33333333333333334555777777777 89999999999999999999999999999988 4567788999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHH
Q psy8697 99 LLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSL 172 (508)
Q Consensus 99 ~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~ 172 (508)
+..+++++ ++.++..-.+.|++.|.... ....+.|..+.++-..+.|+.....+++.++||++++.+ +|...
T Consensus 380 ~~~p~~~~--~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~ 457 (509)
T KOG2504|consen 380 LFLPFATT--YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHA 457 (509)
T ss_pred HHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeee
Confidence 99999999 99999999999999999999 888999999999999999999999999999999999988 59999
Q ss_pred HHHHHHHHHHHHHhhhhcCC
Q psy8697 173 SYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 173 f~~~~~~~~~~~~~~~~~l~ 192 (508)
|+..++..++ ....++..|
T Consensus 458 f~~~g~~~~~-s~~~~~~~~ 476 (509)
T KOG2504|consen 458 FYFCGLCFLL-SAVLLLILR 476 (509)
T ss_pred hhhcChHHHH-HHHHHHHhH
Confidence 9999999988 555555555
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=4e-08 Score=94.65 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccc
Q psy8697 301 SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTW 380 (508)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (508)
.......++.+++.+.+.|.+.||+|+|..+++|+.++..+.++++ +.
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa-----------------fg--------------- 156 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA-----------------FG--------------- 156 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH-----------------Hc---------------
Confidence 3566677889999999999999999999999999999999999999 41
Q ss_pred cccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccc-hhhHHHHHHHHHHHHHHHHH
Q psy8697 381 HNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYA-RGVCSGLMISYGYVCMFFMV 459 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~~g~~i~~ 459 (508)
+.+..++..=...+...........+++++.+|++. |++++|+.-.+..+|-.+||
T Consensus 157 -----------------------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgP 213 (464)
T KOG3764|consen 157 -----------------------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGP 213 (464)
T ss_pred -----------------------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecC
Confidence 222222222222222233333445589999999876 69999999999999999999
Q ss_pred HHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCCC
Q psy8697 460 KAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGKT 499 (508)
Q Consensus 460 ~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
...|.+++. |+..+|.+.+.++++...+.++.++.++.++
T Consensus 214 pfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 214 PFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred CcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 999999999 9999999999999999888777776655443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-07 Score=84.24 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=121.9
Q ss_pred hhHHHHHhhhhhhhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHH-
Q psy8697 18 CTYVRYLHMYTQRWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYII- 96 (508)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i- 96 (508)
|.++..+..+...|...+...| ..+++.++ +|+...+.+.+....-.++.+++.|.++||+|++...+.+..+..+
T Consensus 267 w~~~iicv~yyva~fPFi~lg~--~fF~~rfG-lS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~ 343 (459)
T KOG4686|consen 267 WVLVIICVLYYVAWFPFITLGP--MFFQKRFG-LSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLL 343 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH--HHHHHhhC-CChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHH
Confidence 3444555555556665543333 34678888 9999999999999999999999999999999999877765554444
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-------h
Q psy8697 97 SSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-------D 168 (508)
Q Consensus 97 ~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-------~ 168 (508)
+-.+..++ ++.=.++..+.|++.+.... ....++-..|+++-|.+.+..+...++|..+-|++++.+ .
T Consensus 344 ~H~~l~Ft----~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~ 419 (459)
T KOG4686|consen 344 GHSGLFFT----FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD 419 (459)
T ss_pred HhhhHHhh----hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence 33333333 33345677788999888877 888889999999999999999999999999999999998 3
Q ss_pred hHHHHHH-HHHHHHHHHHhhhhcC
Q psy8697 169 WRSLSYC-FLALVLISGLVLICFA 191 (508)
Q Consensus 169 wr~~f~~-~~~~~~~~~~~~~~~l 191 (508)
|--+|.+ .+.+++. .+.+.+.+
T Consensus 420 ~le~ffl~~~~~aL~-svgil~~~ 442 (459)
T KOG4686|consen 420 NLEAFFLIIGLMALT-SVGILFYL 442 (459)
T ss_pred hHHHHHHHHHHHHHH-HHHHHhhe
Confidence 5444444 4444444 44444444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-06 Score=91.52 Aligned_cols=124 Identities=12% Similarity=0.108 Sum_probs=96.1
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh-----cCCcchHHHHHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL-----ADPGNIELLYLS 115 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~-----~~~~~~~~l~~~ 115 (508)
.+++.++.. -++...+++.+...++..++.+++++++||+|+|+.+..+..+.+++.+...+ ..+ .+.+++.
T Consensus 254 ~~y~~~y~~-~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~ 330 (473)
T PRK10429 254 AIYYFTYVI-GDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHN--ALLIVIA 330 (473)
T ss_pred eeeEEEEEC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchh--HHHHHHH
Confidence 445555544 34556677777777889999999999999999999999888877766655433 233 6777788
Q ss_pred HHHhhcchhhHHH-HHHHhhhccC-------CCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICH-------ENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~-------~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
-++.|++.+...+ ..++++|..+ +++.|...+......-+|..+++.+.+.+
T Consensus 331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999 9999999965 33346688888888889998888887766
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.4e-06 Score=87.37 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=115.8
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhc-ccchhHHHHHHHHHHHHHHHHHhcCCc------chHHH
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY-IGRKWSLILVCVPYIISSLLTILADPG------NIELL 112 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr-~Grk~~l~~~~~~~~i~~~l~~~~~~~------~~~~l 112 (508)
+..++.+..+ .+.++...+...+....-+..+++|.++|+ +||++++.++.++..+|.++.+++... .....
T Consensus 10 LvlYl~~~lg-~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~ 88 (654)
T TIGR00926 10 LVLYFLNFLG-FSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD 88 (654)
T ss_pred HHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence 3455555555 788888888888888888889999999997 599999999999999999888775320 12346
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCC---chhHHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHH
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENF---RPAILCLNSVFISCGILLTTILNLYL-----------DWRSLSYCFL 177 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~---rg~~~~~~~~~~~lG~~~g~~l~~~l-----------~wr~~f~~~~ 177 (508)
+++-.+..+|.|..-+ ..+...|.+++++ |-+...++..+.++|.++++.+..++ +|...|.+.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 6777888899999999 9999999987643 56778888889999999998887766 3888999988
Q ss_pred HHHHHHHHhh
Q psy8697 178 ALVLISGLVL 187 (508)
Q Consensus 178 ~~~~~~~~~~ 187 (508)
+..++..++.
T Consensus 169 i~m~ia~lvf 178 (654)
T TIGR00926 169 ILMILALIVF 178 (654)
T ss_pred HHHHHHHHHH
Confidence 8888744443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-06 Score=89.74 Aligned_cols=124 Identities=12% Similarity=0.133 Sum_probs=92.5
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA--DPGNIELLYLSKIC 118 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~--~~~~~~~l~~~r~l 118 (508)
..+..++.. -+++..+.+.....++..++.+++++++||+|+|+.+..+..+.+++.+...+. ++ .+.+++..++
T Consensus 252 ~~y~~~~~~-~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i 328 (444)
T PRK09669 252 TLYYVNYVL-LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSN--VWLIFALNIL 328 (444)
T ss_pred hheeeeeec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHH
Confidence 344444433 223334456666778888899999999999999999998887766544433332 34 7778888899
Q ss_pred hhcchhhHHH-HHHHhhhccCC-------CCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 119 AGIGGGMSTV-AMVYVSEICHE-------NFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 119 ~G~~~g~~~~-~~~~i~e~~~~-------~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
.|++.+...+ ..++++|..+. ++.|...+.......+|..+|+.+++.+
T Consensus 329 ~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 329 FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999998852 3346678888888899999999888776
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-07 Score=97.48 Aligned_cols=215 Identities=16% Similarity=0.088 Sum_probs=121.3
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l 345 (508)
+...+..+.+.........-++.+-++.+++... ........++.+++.++.+++.||.+||+.+.++.++++++.++.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 3333344444332333444455555667775544 466778888899999999999999999999999999999999888
Q ss_pred hhccccccccccccccCccccccCCcccccccccccccCCCCCCC----CCCCccccCCCCCcchHHHHHHHHHHHHHhh
Q psy8697 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSA----FNTSSCVDHSSLSSDWLSLLFILLYVFFSAV 421 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
+. ++|..=+-+.+. ...++. +..+.+-..+.....+. .....|..+.+....+..++..-++.+....
T Consensus 116 al-----phf~~~~y~~~~-~~~~~~--~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 116 SL-----PHFLSGRYSYST-TVSSTG--NLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred hC-----hHHhcCCccccc-cccccc--cccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 71 111000000000 000000 00000000000000000 0011111111111123333333333333444
Q ss_pred cchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--c---------------------cchhHHHHH
Q psy8697 422 GVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--S---------------------VIGTFNVFG 478 (508)
Q Consensus 422 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g---------------------~~~~~~~~~ 478 (508)
...+...+++.|.+|++.|+...|+.+....+|..+|+.+.+.+.+. + |+..|++.+
T Consensus 188 ~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g 267 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICG 267 (633)
T ss_pred cchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 45566779999999999999999999999999999999999988753 1 444577777
Q ss_pred HHHHHhhheeE
Q psy8697 479 LVSFTLVGFVY 489 (508)
Q Consensus 479 ~~~~~~~~~~~ 489 (508)
++.++.++..+
T Consensus 268 ~l~~l~~v~l~ 278 (633)
T TIGR00805 268 GVALLTSIPFF 278 (633)
T ss_pred HHHHHHHHHHH
Confidence 77766554433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-07 Score=89.39 Aligned_cols=144 Identities=16% Similarity=0.122 Sum_probs=124.3
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-H
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-A 129 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~ 129 (508)
.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++..++.+=.++++++++ .+.+.+.+.+.|+-.+.... .
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~--~~~i~~~klLH~~e~~l~lva~ 333 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN--PWVISLIKLLHALEFPLLLVAA 333 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999 99999999999999999999 9
Q ss_pred HHHhhhccCCCCchhHHHHH-HHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCCch
Q psy8697 130 MVYVSEICHENFRPAILCLN-SVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPESPH 196 (508)
Q Consensus 130 ~~~i~e~~~~~~rg~~~~~~-~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~esp~ 196 (508)
..|+++.+|++-.++...+. +...++|..+.+.+++.+ |.+..|++.+.+.+...++..+.+++.++
T Consensus 334 fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 334 FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 99999999988877777774 788889999988888888 88999999999988877777777776543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-06 Score=79.09 Aligned_cols=96 Identities=22% Similarity=0.304 Sum_probs=75.5
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKI 117 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~ 117 (508)
.|++-++-+.++ ..+.++|.+.-..+-..++...+.|-++||-|||+.-+.-++.+.+++ ++-.+++ |-.++++|.
T Consensus 57 gPYvYyLYstYg-FgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpq--YkVLmVGR~ 132 (454)
T KOG4332|consen 57 GPYVYYLYSTYG-FGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQ--YKVLMVGRV 132 (454)
T ss_pred CceeeeeehhcC-ccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCc--eEEEeehhh
Confidence 344556667777 788899988888888888899999999999999998666555555544 3445777 999999999
Q ss_pred HhhcchhhHHH--HHHHhhhcc
Q psy8697 118 CAGIGGGMSTV--AMVYVSEIC 137 (508)
Q Consensus 118 l~G~~~g~~~~--~~~~i~e~~ 137 (508)
+-|++.+.... -.-+++|.-
T Consensus 133 LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 133 LGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred hhhHHHHHHHHHHHHHHHHHhh
Confidence 99999998877 555677765
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=90.35 Aligned_cols=135 Identities=10% Similarity=-0.085 Sum_probs=96.2
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
......+.|.+-++.|.+..+ ........++..++.++.|++.||+|||+++..+..+.+++.++..
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~------------ 109 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW------------ 109 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH------------
Confidence 455667788886668876655 4677788899999999999999999999999999999998887653
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
..... ++.+..++..++.+.+.+.. .+....++.|..|++
T Consensus 110 -----~~~~a----------------------------------~~~~~ll~~r~l~G~g~g~~-~~~~~~~v~~~~~~~ 149 (438)
T PRK10133 110 -----PAAEI----------------------------------MNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPES 149 (438)
T ss_pred -----HHHhc----------------------------------CCHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCChh
Confidence 11111 12233334444444444433 344457777877777
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAI 466 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~ 466 (508)
.|+..+++.+....+|..+++.+.+.+.
T Consensus 150 ~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7667899999999999999998876544
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-07 Score=89.92 Aligned_cols=124 Identities=10% Similarity=0.068 Sum_probs=99.0
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc-cchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI-GRKWSLILVCVPYIISSLLTILADPGNIELLYLSKIC 118 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~-Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l 118 (508)
.+|.+.++.+ .+..+.+.+.+...++..+++++.|++.||+ +||+.+..+..+.+++.+...+.++ ..... .-++
T Consensus 219 ~lp~~~~~~g-~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~l 294 (355)
T TIGR00896 219 WLPAILISHG-ASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM--HGLWA-WALV 294 (355)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh--hHHHH-HHHH
Confidence 3555555655 8889999999999999999999999999999 5667777888888888877777665 33322 4568
Q ss_pred hhcchhhHHH-HHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 119 AGIGGGMSTV-AMVYVSEICH-ENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 119 ~G~~~g~~~~-~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
.|++.+...+ ..+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888 7777766554 56678889998888889999999888877
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-06 Score=85.16 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhh
Q psy8697 57 GPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSE 135 (508)
Q Consensus 57 g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e 135 (508)
+.+.-+-.+...+.-+.+.++.+|+..+.=...+..++.++.++.+++++ .+.-+++-.+.+++.|.... ...+..
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~--v~~~l~Gv~las~ssg~GE~tfL~lt~- 138 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS--VWVRLLGVVLASLSSGLGEVTFLSLTH- 138 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc--hhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence 33555566677777778888999988666666677788999999999999 99999999999999999988 666644
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy8697 136 ICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICFAPES 194 (508)
Q Consensus 136 ~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~l~es 194 (508)
.+++ ...+.+..+.+.+.++|+..-..+ +-|..+++...+.++..+..++.+|++
T Consensus 139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5543 356777777787778777665544 457788888877776344444455543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.3e-07 Score=88.81 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=104.2
Q ss_pred chhhhcHHHHHHHhCCcchh--hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 281 YPVIFYAMQLFKEVGTEIDE--SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
....+-.|.+.++.|++.++ ......+..+..+..+++|++.||+|.|+++..+.+..++..++.+
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~------------ 110 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLL------------ 110 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH------------
Confidence 44556677777778887665 4677788888999999999999999999999999999988888888
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
+. ...+...+.-++++.+-+... ....++...+|++
T Consensus 111 -----fa-------------------------------------~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~k 146 (511)
T TIGR00806 111 -----LG-------------------------------------TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPS 146 (511)
T ss_pred -----HH-------------------------------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHH
Confidence 41 122333333344444444433 5568999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHhhhccch
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIG 472 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~ 472 (508)
+|+++.|+.+....+|.++++.+.+.+...||..
T Consensus 147 ER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~ 180 (511)
T TIGR00806 147 RYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWIS 180 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999999999999955436554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=84.35 Aligned_cols=144 Identities=26% Similarity=0.324 Sum_probs=113.9
Q ss_pred HHHHhhhcccccccCC--ccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFG--SHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~--~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~ 115 (508)
.+..+.+..+.. .+. .+.++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++..+...+.+++.
T Consensus 22 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (338)
T COG0477 22 SPALPLLLSTLS-LSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLIL 100 (338)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 344566656555 333 47899999999999999999999999999998888888765666556655542228999999
Q ss_pred HHHhhcchhhHHH-HHHHhhhccCC-CCchhHHHHHHH-HHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHH
Q psy8697 116 KICAGIGGGMSTV-AMVYVSEICHE-NFRPAILCLNSV-FISCGILLTTILNLYL------DWRSLSYCFLALVLI 182 (508)
Q Consensus 116 r~l~G~~~g~~~~-~~~~i~e~~~~-~~rg~~~~~~~~-~~~lG~~~g~~l~~~l------~wr~~f~~~~~~~~~ 182 (508)
|+.+|++.+...+ ..+++.|+.|+ ++|+...+.... ...+|..+++.++..+ +||..|.........
T Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 101 RLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999999 99999999988 788999998888 5888888888777655 688866666655544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.8e-07 Score=90.84 Aligned_cols=125 Identities=22% Similarity=0.214 Sum_probs=107.4
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC--CcchHHHHHHHH
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD--PGNIELLYLSKI 117 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~--~~~~~~l~~~r~ 117 (508)
..+++.++.. -++...+.+..+..++..++.+++++++||+|+|+++..+..+.+++.++..+.+ + .+.+++.-+
T Consensus 247 ~~~y~~~~vl-~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~ 323 (428)
T PF13347_consen 247 FLPYYFTYVL-GNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGS--PWLVLILFI 323 (428)
T ss_pred HHHHHHHHHh-cCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhh--HHHHHHHHH
Confidence 3455555544 2346778888899999999999999999999999999999999999999998887 7 999999999
Q ss_pred HhhcchhhHHH-HHHHhhhccCC-------CCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 118 CAGIGGGMSTV-AMVYVSEICHE-------NFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 118 l~G~~~g~~~~-~~~~i~e~~~~-------~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
+.|++.+...+ ..++++|..+. ++.|...+......-+|..+++.+.+.+
T Consensus 324 l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 324 LAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999 99999998873 3458888999988889998888877766
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-06 Score=83.21 Aligned_cols=123 Identities=10% Similarity=-0.001 Sum_probs=99.2
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-H
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-A 129 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~ 129 (508)
.++.+.+...+.+..+..+|.++.+++.||+|+||.+.++..+..++.++....++ ...+ .+-++.|++.+..+| .
T Consensus 175 ~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~--~~~~-~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 175 LPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG--YVAM-WFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC--HHHH-HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999888888888777766655 4333 455688999999999 8
Q ss_pred HHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHH
Q psy8697 130 MVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLA 178 (508)
Q Consensus 130 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~ 178 (508)
.+...+..|++ .+.+.++. ....+|.+++|.+.+.+ |.+..|++..+
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 98888887654 45666665 56678999999877777 66777764433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00027 Score=71.38 Aligned_cols=333 Identities=14% Similarity=0.032 Sum_probs=159.9
Q ss_pred HHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh------cCC------c-chHHHHHHHHHhhcchhhHHH-
Q psy8697 63 VIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL------ADP------G-NIELLYLSKICAGIGGGMSTV- 128 (508)
Q Consensus 63 ~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~------~~~------~-~~~~l~~~r~l~G~~~g~~~~- 128 (508)
-.+...+.++..|.+.||..|+++...+.+..-++..+.+. ... . ....+++.-.+.|.-.-....
T Consensus 47 ~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~ 126 (432)
T PF06963_consen 47 RSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIA 126 (432)
T ss_pred HHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777888899999999999888776665443332221 111 0 012222222222222222222
Q ss_pred -HHHHhhhcc------CCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCC----C
Q psy8697 129 -AMVYVSEIC------HENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAP----E 193 (508)
Q Consensus 129 -~~~~i~e~~------~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~----e 193 (508)
..+.=.||. +++.+.+..+...-.=-+..+++|++.+.+ +.+....+.++..++...+=++++. .
T Consensus 127 ~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~ 206 (432)
T PF06963_consen 127 NTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNS 206 (432)
T ss_pred hhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222223443 233445555555555566778888888877 6666666666666664444333332 2
Q ss_pred CchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHHHHHHH
Q psy8697 194 SPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFT 273 (508)
Q Consensus 194 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (508)
.|. +..++++++.+...++. -..++.......+.. .+.-+.....|+..++++. +.+.+...++++
T Consensus 207 ~P~-L~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~------~~~~~~~~~~w~~Y~~q~v-flas~alalLY~ 272 (432)
T PF06963_consen 207 VPA-LAVKKRSSESESSSDEE------SSSESSSDPSILKRL------WNPLRTIIRGWRTYFRQPV-FLASFALALLYF 272 (432)
T ss_pred ChH-hcCCCCCcccccccccc------ccccccchhhHHHHH------HHHHHHHhccHHHHHhCHH-HHHHHHHHHHHH
Confidence 222 11111100000000000 000000000000000 0011111223342444443 222222222222
Q ss_pred HHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccc
Q psy8697 274 LQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMK 352 (508)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~ 352 (508)
- .-++......|+...|++... +..-...++.++.++++..++.+|+|..+.=..+......+..+..
T Consensus 273 T-----VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v------ 341 (432)
T PF06963_consen 273 T-----VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCV------ 341 (432)
T ss_pred H-----HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH------
Confidence 1 223445566677777886554 4566667778889999999999999988776666654444333332
Q ss_pred cccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhh
Q psy8697 353 STFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMIS 432 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (508)
.....+.+ + . .......++......=..-.++-.....++.
T Consensus 342 -----------~~~~~~~~-----------~-------~----------~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Q 382 (432)
T PF06963_consen 342 -----------VSFWAPGS-----------P-------F----------SSISAYLLLGGIALSRIGLWSFDLAVTQIMQ 382 (432)
T ss_pred -----------HHHhcCCC-----------C-------c----------hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhc
Confidence 11111110 0 0 0011111111111111112223233347888
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHH
Q psy8697 433 ELLPSYARGVCSGLMISYGYVCMFFMV 459 (508)
Q Consensus 433 e~~p~~~r~~~~g~~~~~~~~g~~i~~ 459 (508)
|..|+++||...|+-+...++...+.-
T Consensus 383 e~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 383 ENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred ccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888776643
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=92.05 Aligned_cols=137 Identities=18% Similarity=0.241 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccc
Q psy8697 301 SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTW 380 (508)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (508)
.....+..++.++|+++.|.++||+|||+++..+.++..++.+..+ +
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a-----------------~---------------- 167 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTA-----------------F---------------- 167 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHH-----------------H----------------
Confidence 3667778888999999999999999999999999999998887777 3
Q ss_pred cccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHH
Q psy8697 381 HNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVK 460 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~ 460 (508)
...+......=++.+++..+.....+.+..|.++++.|+.+..+ ....+.++.+++.
T Consensus 168 ----------------------a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~ 224 (521)
T KOG0255|consen 168 ----------------------APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPA 224 (521)
T ss_pred ----------------------hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHH
Confidence 13333333333444555555667777999999999999999999 8888899999988
Q ss_pred HhHHHhhhccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 461 AFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 461 ~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
..+++.. +|++.+++......+..++ +++.+|.
T Consensus 225 ~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 225 GAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 8888887 7888888877777776555 4445564
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.9e-06 Score=75.78 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=103.6
Q ss_pred hhcccchhhhcHHHHHHHhCCcchhh-HHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccc
Q psy8697 276 QFTGVYPVIFYAMQLFKEVGTEIDES-HALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKST 354 (508)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~ 354 (508)
..+..+.+..|.|.+-++.|++.++. .......++..+ .++.|.+.|++|.+.++.+|.+...+++..+.
T Consensus 14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~-------- 84 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLW-------- 84 (250)
T ss_pred hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--------
Confidence 34457888999999988898877664 455555566555 58889999999999999999999999998887
Q ss_pred cccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcc-hhhhHhhhhc
Q psy8697 355 FTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGV-IVIPWTMISE 433 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e 433 (508)
......- +..+. ...++..+..+.+.++ .........+
T Consensus 85 ---------l~~~~~i-------------------------------~~~~~-~~~~~~~~l~~~s~~~~~ta~lvt~~~ 123 (250)
T PF06813_consen 85 ---------LAVSGRI-------------------------------PSLPV-WLMCLFLFLGGNSSCWFNTASLVTCVR 123 (250)
T ss_pred ---------HHHhCcc-------------------------------Cccch-HHHHHHHHHHcccHHHhhhHHHHHHHH
Confidence 3222110 11222 2223333333333333 2333344557
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHH
Q psy8697 434 LLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSF 482 (508)
Q Consensus 434 ~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~ 482 (508)
.+|. .||++.|+.-....+++.+-..+...+.+.+....+...+....
T Consensus 124 NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~ 171 (250)
T PF06813_consen 124 NFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPA 171 (250)
T ss_pred hCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 7885 79999999999999999998888877776643333444443333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-05 Score=76.26 Aligned_cols=147 Identities=12% Similarity=0.045 Sum_probs=119.2
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc-cchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI-GRKWSLILVCVPYIISSLLTILADPGNIELLYLSKIC 118 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~-Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l 118 (508)
-+|.+..|-+ .|..+.|++.+...+.....++....+++|. ++|+..+....++.++...+.+.+. -. .+..-++
T Consensus 230 WLP~ili~~G-~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~--~~-~~lw~~l 305 (395)
T COG2807 230 WLPAILIDRG-LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG--QL-PILWALL 305 (395)
T ss_pred HHHHHHHHcC-CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh--hH-HHHHHHH
Confidence 3678878877 9999999999999999999999999999975 6788888888899999988888886 22 2222599
Q ss_pred hhcchhhHHH-HHHHhhhccCCCCc-hhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 119 AGIGGGMSTV-AMVYVSEICHENFR-PAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 119 ~G~~~g~~~~-~~~~i~e~~~~~~r-g~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
.|+|.|..++ +...+.+..++.++ ++..+..|....+=..+||.+.+++ +|+..........++..+..+..
T Consensus 306 lG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 306 LGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred HhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999 99999998866554 5556667777777778899999998 89999888887777744444444
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=89.53 Aligned_cols=140 Identities=13% Similarity=0.129 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccc
Q psy8697 301 SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTW 380 (508)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (508)
.........+.+++.+.++++.||+|-|+++..+.++.+++.++.. .....
T Consensus 76 ~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P-----------------~aa~~------------ 126 (466)
T KOG2532|consen 76 GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTP-----------------LAASI------------ 126 (466)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHH-----------------HHHHh------------
Confidence 4777788899999999999999999999999999999999998888 43332
Q ss_pred cccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHH
Q psy8697 381 HNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVK 460 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~ 460 (508)
..+..++.=++.+.+.+. ..|....+.++-.|+++|++..++.....++|.+++-.
T Consensus 127 -----------------------~~~~~~~~R~lqGl~~g~-~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp 182 (466)
T KOG2532|consen 127 -----------------------GFYLLLVLRFLQGLGQGV-LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMP 182 (466)
T ss_pred -----------------------cchhhHHHHHHhHHHHhH-HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333 45666789999999999999999999999999999999
Q ss_pred HhHHHhhh--ccchhHHHHHHHHHHhhheeEEEec
Q psy8697 461 AFPFAIHS--SVIGTFNVFGLVSFTLVGFVYFYLP 493 (508)
Q Consensus 461 ~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
+.|.+-+. ||+..|++.++++++..++.+.+..
T Consensus 183 ~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 183 VSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988 9999999999999987766555444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.3e-06 Score=87.46 Aligned_cols=117 Identities=14% Similarity=0.174 Sum_probs=103.3
Q ss_pred cccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc----------CCcchHHHHHHHHH
Q psy8697 49 IVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA----------DPGNIELLYLSKIC 118 (508)
Q Consensus 49 ~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~----------~~~~~~~l~~~r~l 118 (508)
.+.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++ .+..+..-++
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~--~~~~~~~~~l 360 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISD--EVFVLGDSII 360 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCC--eeeeeehhHH
Confidence 34899999999999999999999999999999999999999999999988665321 33 4455666788
Q ss_pred hhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 119 AGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 119 ~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
.+++.+.... ...++.+..|++++|...++.+...++|..+++.+++.+
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999988877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-06 Score=78.40 Aligned_cols=361 Identities=16% Similarity=0.165 Sum_probs=214.3
Q ss_pred hhhcccccccCCccch-hHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhh
Q psy8697 42 KYLTRHYIVMFGSHFG-PTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAG 120 (508)
Q Consensus 42 ~~i~~~~~~~s~~~~g-~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G 120 (508)
|++...+.|++..+.. =+.-...-.+.+.-++.=.+.|..-.|+++++-.+.......+..+.++ .+.+=+.-++.|
T Consensus 29 pyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s--V~~mQvlE~FyG 106 (433)
T KOG3810|consen 29 PYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS--VKAMQVLEFFYG 106 (433)
T ss_pred hhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC--chheeeehhhcC
Confidence 4444344445554432 2223344455666667778899999999999988888888899999999 999999999999
Q ss_pred cchhhHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy8697 121 IGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL------DWRSLSYCFLALVLISGLVLICFAPES 194 (508)
Q Consensus 121 ~~~g~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~l~es 194 (508)
...+....-++|+-+..+++++-++.+.--.+.-.|...|..++..+ +++..-.+...-..+ .....+++|..
T Consensus 107 ~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~i-a~~~A~fLP~v 185 (433)
T KOG3810|consen 107 PATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTI-AVLLALFLPRV 185 (433)
T ss_pred hHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHH-HHHHHhhCCCC
Confidence 99888777899999999999999999999999999999999988887 444444444444444 66667788877
Q ss_pred chhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhh-hhhhhHHHHH---HHhcCcccchhHHHHHH
Q psy8697 195 PHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYD-ETRNKKALWR---QILTTRECYKPLILLVI 270 (508)
Q Consensus 195 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 270 (508)
+|.+.-++++ ++ .. ..+.+..+ .+.+..+ .+.....+++ +..++|. +....
T Consensus 186 ~rSl~f~~~~-------~~--~~----v~~~e~~~-------~~~~~~~~l~~~~~~l~~~l~~~y~np~-----ll~WS 240 (433)
T KOG3810|consen 186 KRSLYFHRLE-------DK--IS----VGDLEEMN-------PQASYMSYLRGAFVLLWRDLQECYSNPR-----LLKWS 240 (433)
T ss_pred chhhhhhccc-------cc--ce----eccchhcC-------ccchhhHHHHHHHHHHHHHHHHHhcCch-----hhhhH
Confidence 6544333111 00 00 00000000 0000000 0011122222 1444553 44455
Q ss_pred HHHHHhhcccchhhhcHHHHHHHhCCcchhh----HHHHHHHHHHHHHHHHHHHhhcccCCeeehh--hhhhHHHHHHHH
Q psy8697 271 LFTLQQFTGVYPVIFYAMQLFKEVGTEIDES----HALVFLGIIRFGMSVVTTVLARGFGRKQLLI--VSAAGLGVSSIL 344 (508)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~--~~~~~~~~~~~~ 344 (508)
++.....+|++-+..|...+-++.. +.... ..=....+.+.++.+..|++--+..|+.-+. ++.+..+-..+.
T Consensus 241 lWwAl~scg~~QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~ 319 (433)
T KOG3810|consen 241 LWWALASCGYYQVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFI 319 (433)
T ss_pred HHHHHhhchhHHHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhh
Confidence 5556666778888888888887753 22221 2233344556677778888765555543222 232222222222
Q ss_pred HhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcch
Q psy8697 345 LSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVI 424 (508)
Q Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (508)
+. . ....|+..+...++...+....
T Consensus 320 m~--------------------~----------------------------------t~~Iw~~Ya~yvlfr~~y~l~i- 344 (433)
T KOG3810|consen 320 MA--------------------Q----------------------------------TQHIWVCYAGYVLFRVIYQLTI- 344 (433)
T ss_pred hh--------------------c----------------------------------ccceehhhhhHHHHHhhHhhhh-
Confidence 22 1 1144555555555655555533
Q ss_pred hhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh------------ccchhHHHHHHHHHHhhheeE
Q psy8697 425 VIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS------------SVIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 425 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~------------g~~~~~~~~~~~~~~~~~~~~ 489 (508)
++....+++....|.-|...|+...+.-+-..+-..+ ..|. -+...|.+.+++.++...+.+
T Consensus 345 tiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~ 418 (433)
T KOG3810|consen 345 TIATFQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY 418 (433)
T ss_pred hHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence 4444555666667777888888777665554443322 2231 244567888888888766543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=66.09 Aligned_cols=77 Identities=17% Similarity=0.052 Sum_probs=71.1
Q ss_pred chhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHH
Q psy8697 33 GLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELL 112 (508)
Q Consensus 33 ~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l 112 (508)
+++.|.|.+|.+++|.+ +|.++.|++.+...+|+.+|++...++.++..+++.+..+.+...+..+.+++.++ .+.+
T Consensus 7 gRFayTplLP~M~~~~~-ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~--~~~w 83 (85)
T PF06779_consen 7 GRFAYTPLLPLMQADGG-LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS--FWLW 83 (85)
T ss_pred HHHHHHhHhHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc--hHHH
Confidence 36778999999999988 99999999999999999999999999999988899999999999999999999998 6554
|
Note that many members are hypothetical proteins. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=77.56 Aligned_cols=162 Identities=15% Similarity=0.062 Sum_probs=112.7
Q ss_pred hhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccccc
Q psy8697 283 VIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQ 361 (508)
Q Consensus 283 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (508)
.....|.+.+..+.+..+ +........+-.++++..+++.+|+|+|+-++.++.++++++.++.
T Consensus 32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~--------------- 96 (422)
T COG0738 32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW--------------- 96 (422)
T ss_pred chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh---------------
Confidence 345566666667776555 4667777778888999999999999999999999999999998886
Q ss_pred CccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhc-chhhhHhhhhccCcccch
Q psy8697 362 SNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVG-VIVIPWTMISELLPSYAR 440 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r 440 (508)
.... .......+..++..+.+.+ .-.....++..+.|++..
T Consensus 97 --pAa~------------------------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a 138 (422)
T COG0738 97 --PAAS------------------------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA 138 (422)
T ss_pred --hhhh------------------------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH
Confidence 3222 2222222222233333332 233445888899888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHhhh--------------------ccchhHHHHHHHHHHhhheeEE-EeccCCC
Q psy8697 441 GVCSGLMISYGYVCMFFMVKAFPFAIHS--------------------SVIGTFNVFGLVSFTLVGFVYF-YLPETKG 497 (508)
Q Consensus 441 ~~~~g~~~~~~~~g~~i~~~~~g~l~~~--------------------g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 497 (508)
..-+.+.+.++.+|++++|.+.+.+..+ .++.+|...+....+..+.... -.|+.+.
T Consensus 139 ~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~ 216 (422)
T COG0738 139 AFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV 216 (422)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 8899999999999999999999988761 3556777777666665554433 2354443
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-06 Score=83.81 Aligned_cols=125 Identities=18% Similarity=0.267 Sum_probs=96.2
Q ss_pred HHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHhhcchhhHHH-HHHHhhhccCC
Q psy8697 63 VIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPG--NIELLYLSKICAGIGGGMSTV-AMVYVSEICHE 139 (508)
Q Consensus 63 ~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~--~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~ 139 (508)
..+.-.-|.++.+.+.||+|||+++..+.+++++..++...+.+. ....++.+|++ ..+.+. .++|..|.+|.
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPT 465 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccch
Confidence 355667788999999999999999999999999999888877662 12334445544 344455 88999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHhhhhcCC
Q psy8697 140 NFRPAILCLNSVFISCGILLTTILNLYL--DWRSLSYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 140 ~~rg~~~~~~~~~~~lG~~~g~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~~l~ 192 (508)
+-|+...|.-..+.-+|.++.|+++-.. +-..+..+.+...++ +.+...++|
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~il-agIavcffP 519 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFIL-AGIAVCFFP 519 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHH-HHHHheeee
Confidence 9999999999999999999999999443 444555666777776 444555555
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-05 Score=77.48 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=101.5
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKI 117 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~ 117 (508)
.....+..+...+.++....+.......+..++.+++..+.+|+|+|+++..+.++.+++.++.-+.+..+.+..++..+
T Consensus 256 ~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~ 335 (467)
T COG2211 256 GSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALI 335 (467)
T ss_pred hhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHH
Confidence 33355555555445555666777778888888899999999999999999999999999999999988434889999999
Q ss_pred HhhcchhhHHH-HHHHhhhccC-------CCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 118 CAGIGGGMSTV-AMVYVSEICH-------ENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 118 l~G~~~g~~~~-~~~~i~e~~~-------~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
+.+++.+...+ ..++++|..+ .+.-|...+......=+|..++..+.++.
T Consensus 336 i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 336 IAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred HHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 8888888764 23336667777777777777777655554
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=82.17 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=105.7
Q ss_pred hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcc
Q psy8697 294 VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNES 372 (508)
Q Consensus 294 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (508)
.++..+. ....+.+.++.+++.+.++++.||++-.+.+....++.++-.++-. . .
T Consensus 76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~-----------------~-~------ 131 (495)
T KOG2533|consen 76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTA-----------------A-V------ 131 (495)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHH-----------------H-H------
Confidence 3343333 4678888899999999999999999944433333332222221211 1 0
Q ss_pred cccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHH
Q psy8697 373 MRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGY 452 (508)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 452 (508)
.+.+..++.-++.+. +..+..|....+++.-+.+++|+.-+|+.++...
T Consensus 132 ------------------------------~s~~~~ialr~llGl-~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~ 180 (495)
T KOG2533|consen 132 ------------------------------HSFPGLIALRFLLGL-FESGGWPGVVAILGNWYGKSERGLRMGIWYASAS 180 (495)
T ss_pred ------------------------------hhhHHHHHHHHHHHH-HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcc
Confidence 133334444444444 4444556666999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhh------h-ccchhHHHHHHHHHHhhheeEEEeccCC
Q psy8697 453 VCMFFMVKAFPFAIH------S-SVIGTFNVFGLVSFTLVGFVYFYLPETK 496 (508)
Q Consensus 453 ~g~~i~~~~~g~l~~------~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (508)
+|+++|+.+...+.+ . ||++.|++-++++++..+++++++|+..
T Consensus 181 ~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 181 LGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred hhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 999999999888643 2 8999999999999999999999998643
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.3e-05 Score=66.43 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=98.2
Q ss_pred HHhhhcccc-cccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy8697 40 YLKYLTRHY-IVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKIC 118 (508)
Q Consensus 40 ~~~~i~~~~-~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l 118 (508)
.+..+.++. .++++..--.-.++......+++++.+.+.+++|.|+.+++|.+.+.+-... -+-++ .+.++.+-.+
T Consensus 22 vi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~--~~~l~~~s~l 98 (156)
T PF05978_consen 22 VIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPN--SYTLYPASAL 98 (156)
T ss_pred HHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhh--HHHHHHHHHH
Confidence 344444432 1233333334566777778889999999999999999999999999865444 35666 8899999999
Q ss_pred hhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q psy8697 119 AGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY 166 (508)
Q Consensus 119 ~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~ 166 (508)
.|++.+..++ ...++.+..++++|++-.++.......+.++|.++...
T Consensus 99 ~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 99 LGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999888888888888776554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.6e-06 Score=83.46 Aligned_cols=159 Identities=10% Similarity=0.005 Sum_probs=108.0
Q ss_pred cchhhhcHHHHHHH-hC----Ccchhh-HHHHHHHHHHHHHHHHHHHhhccc-CCeeehhhhhhHHHHHHHHHhhccccc
Q psy8697 280 VYPVIFYAMQLFKE-VG----TEIDES-HALVFLGIIRFGMSVVTTVLARGF-GRKQLLIVSAAGLGVSSILLSSNLLMK 352 (508)
Q Consensus 280 ~~~~~~~~~~~~~~-~g----~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~l~~~~~~~ 352 (508)
+|++-.-+..|+.. .+ ++.+.+ .....++...-...+++||++||+ |+|+.++.+.+++.++.++++
T Consensus 37 yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~------ 110 (498)
T COG3104 37 YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLA------ 110 (498)
T ss_pred hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh------
Confidence 44444444444432 33 544333 334444444556788999999996 999999999999999999999
Q ss_pred cccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhh
Q psy8697 353 STFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMIS 432 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (508)
... . .......+.+.+...+ ....-+...++++
T Consensus 111 -----------~~~-~----------------------------------~~~~gl~i~L~~I~iG-~Gl~K~NiS~llg 143 (498)
T COG3104 111 -----------ISS-V----------------------------------SGPGGLYIGLALIIVG-TGLFKPNISSLLG 143 (498)
T ss_pred -----------ccc-c----------------------------------ccccHHHHHHHHHHhc-cccccccHHHHHH
Confidence 411 0 0122233333333333 3334445558999
Q ss_pred ccCccc--chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEE
Q psy8697 433 ELLPSY--ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFY 491 (508)
Q Consensus 433 e~~p~~--~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 491 (508)
|++|++ .|-.+.++.++..++|++++|.+.+++.+. |+...|...++-..++.+..++.
T Consensus 144 ~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 144 ELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred HhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999763 367888899999999999999999999999 99999988887777776554443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=9e-05 Score=76.70 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=77.3
Q ss_pred ccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHH
Q psy8697 54 SHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVY 132 (508)
Q Consensus 54 ~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~ 132 (508)
...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.++.+...+++.-++.|++.+...+ ..++
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888999999999999999999998776555544444444343331133445555667887777777 6777
Q ss_pred hhhccC-------CCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 133 VSEICH-------ENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 133 i~e~~~-------~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
++|..+ +++.|...+......-+|..+++.+++.+
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765 23335556666677777888877776655
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0059 Score=62.59 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=84.8
Q ss_pred ccchhHHHHHHHHHhhh-hhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc----CCc-c-------------------
Q psy8697 54 SHFGPTTSFVIITSPVG-STVIGPIMDYIGRKWSLILVCVPYIISSLLTILA----DPG-N------------------- 108 (508)
Q Consensus 54 ~~~g~~~s~~~lg~~~~-~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~----~~~-~------------------- 108 (508)
+.+.++-+...+...+. .++.+++++|++|++++-.....+.+..+++++. ++. +
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 56788888887777776 8999999999999999888777777666666554 110 0
Q ss_pred -----hHHHHHHHHHhhcchhhHH-H-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 109 -----IELLYLSKICAGIGGGMST-V-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 109 -----~~~l~~~r~l~G~~~g~~~-~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
.|...+..+...+-..... . -..+++|.++.+|-.|..++...+.++|.++++.+..++
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333344444444433 3 678899999999999999999999999999999888776
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.8e-06 Score=85.90 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccc
Q psy8697 301 SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTW 380 (508)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (508)
........++..+++++.|+++|++|||+.+.++.+...++.++.. ..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~-----------------~a--------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIA-----------------LA--------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----------------Hh---------------
Confidence 4677788899999999999999999999999999999999998888 41
Q ss_pred cccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHH
Q psy8697 381 HNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVK 460 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~ 460 (508)
.+.+...+.-++.+.+.+...... ..+.+|..|++.||...+..+....+|..++ .
T Consensus 140 ----------------------~~~~~l~~GR~l~G~g~G~~~~~~-piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~ 195 (513)
T KOG0254|consen 140 ----------------------PSWYQLIVGRILTGLGVGGASVLA-PVYISEIAPAHIRGTLVSLYQLFITIGILLG-Y 195 (513)
T ss_pred ----------------------hhHHHHHHHHHHhccchhhhhhcc-hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-H
Confidence 133334444444444444433333 4899999999999999999999988877777 5
Q ss_pred HhHHHhhh---ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 461 AFPFAIHS---SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 461 ~~g~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
+.+...+. +|+..+.+..+.+++..+. .++.||+
T Consensus 196 ~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 196 CINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred HHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 55555543 5777777777777776666 6667765
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00014 Score=71.46 Aligned_cols=144 Identities=18% Similarity=0.124 Sum_probs=119.5
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhh-cccchhHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMD-YIGRKWSLILVCVPYIISSLLTIL---ADPGNIELLYLSK 116 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~D-r~Grk~~l~~~~~~~~i~~~l~~~---~~~~~~~~l~~~r 116 (508)
++++..+-.+++..+..-+.+.+..|..++-...|++.. |.++|+...+++...+++..+..+ ..+ .+.+...-
T Consensus 231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~--~~~~~~~~ 308 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS--PWLFRPGV 308 (403)
T ss_pred cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHH
Confidence 544444444499999999999999999999999999888 678888888888888877766544 445 88999999
Q ss_pred HHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh--------------hhHHHHHHHHHHHH
Q psy8697 117 ICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL--------------DWRSLSYCFLALVL 181 (508)
Q Consensus 117 ~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l--------------~wr~~f~~~~~~~~ 181 (508)
++.|++.|.... ..+...|...+++.|..+|.+.....+...++..+++.+ +|-.+|.+.++..+
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~ 388 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL 388 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999998888888888776 56777777777777
Q ss_pred HHHHh
Q psy8697 182 ISGLV 186 (508)
Q Consensus 182 ~~~~~ 186 (508)
++.++
T Consensus 389 ~a~~l 393 (403)
T PF03209_consen 389 AALVL 393 (403)
T ss_pred HHHHH
Confidence 63333
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00066 Score=71.31 Aligned_cols=144 Identities=14% Similarity=0.093 Sum_probs=112.4
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc-cchhHHHHHHHHHHHHHHHHHhcCCc---------
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI-GRKWSLILVCVPYIISSLLTILADPG--------- 107 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~-Grk~~l~~~~~~~~i~~~l~~~~~~~--------- 107 (508)
...+.++.++.+ .+.....-.++.+.-......+.++.++|-| ||-+++.++.++..++..+...+...
T Consensus 58 ~nlv~ylt~~~~-~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 58 SNLVTYLTLELH-ASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hHHHHHHHHHhc-cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 455777888887 6667777788888888888889999999986 89999999999888886554432110
Q ss_pred --------------chHHHHHHHHHhhcchhhHHH-HHHHhhhccC---CC---CchhHHHHHHHHHHHHHHHHHHHHHh
Q psy8697 108 --------------NIELLYLSKICAGIGGGMSTV-AMVYVSEICH---EN---FRPAILCLNSVFISCGILLTTILNLY 166 (508)
Q Consensus 108 --------------~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~---~~---~rg~~~~~~~~~~~lG~~~g~~l~~~ 166 (508)
....+..+.-+..+|.|+.-+ ..++-+|-++ ++ ++...+.++....++|..++..+..+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 123667777788889999999 9999999998 22 22367788888889999988888777
Q ss_pred h----hhHHHHHHHHHHHHH
Q psy8697 167 L----DWRSLSYCFLALVLI 182 (508)
Q Consensus 167 l----~wr~~f~~~~~~~~~ 182 (508)
. +|.+-|.+..+..++
T Consensus 217 iq~~~~w~lgf~i~~~~~~l 236 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNAL 236 (571)
T ss_pred hhhcccceeeccHHHHHHHH
Confidence 7 899999888888877
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.7e-05 Score=77.19 Aligned_cols=137 Identities=12% Similarity=0.159 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCC
Q psy8697 307 LGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQV 386 (508)
Q Consensus 307 ~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (508)
.++..++.+...|.++||+|||..+........+..+.+. +
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~-----------------~---------------------- 111 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLL-----------------F---------------------- 111 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHH-----------------H----------------------
Confidence 4677788899999999999999999988888888777777 3
Q ss_pred CCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8697 387 PPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAI 466 (508)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~ 466 (508)
..|+..+... ..+++.. ......+++++....+.|....|+.+...+.+..++|.+.+.+.
T Consensus 112 -----------------~~~~~~~~~~-l~g~~~~-~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~ 172 (463)
T KOG2816|consen 112 -----------------QGYWFFLLLG-LSGGFSA-IFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV 172 (463)
T ss_pred -----------------HHHHHhhhcc-cccchhh-hhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2233333222 2222222 23444589999999999999999999999999999999999999
Q ss_pred hh-ccchhHHHHHHHHHHhhheeEEEeccCCCCChH
Q psy8697 467 HS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFV 501 (508)
Q Consensus 467 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (508)
+. +...++.+.++..++..+...+++||+..++.+
T Consensus 173 ~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 173 KFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 99 999999999999999999999999998655433
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0025 Score=61.69 Aligned_cols=124 Identities=15% Similarity=0.016 Sum_probs=73.6
Q ss_pred HHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhh-----cccchhHHHH-HHHHHHHHHHHHHhcCC------c
Q psy8697 40 YLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMD-----YIGRKWSLIL-VCVPYIISSLLTILADP------G 107 (508)
Q Consensus 40 ~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~D-----r~Grk~~l~~-~~~~~~i~~~l~~~~~~------~ 107 (508)
.+|.+.+.-+ .|.++.+...-++ ..+ ---+.|.++.| |+||||.-++ +..+.+...++.+...+ .
T Consensus 52 ~iP~lL~ak~-vSyt~~a~fS~ay-~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng 128 (510)
T KOG3574|consen 52 AIPLLLQAKG-VSYTSQAIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNG 128 (510)
T ss_pred hhHHHhcCCC-cchhhhhhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCC
Confidence 4677777555 7777666543222 111 12467899999 9999986443 33333333333332211 1
Q ss_pred ---chHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q psy8697 108 ---NIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY 166 (508)
Q Consensus 108 ---~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~ 166 (508)
+...+...-++.-+..+.--. .-.+.-.+..+++-|-+......+.+.|.+++..+--.
T Consensus 129 ~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLa 191 (510)
T KOG3574|consen 129 GLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLA 191 (510)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeE
Confidence 133333344555666666666 66777777888888888888888888887777655433
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.7e-05 Score=77.34 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=117.3
Q ss_pred ccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhh
Q psy8697 46 RHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGM 125 (508)
Q Consensus 46 ~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~ 125 (508)
|+.+ ..+.-.|........|-.+.-++.+++..|+|+-+++.+++.+..+=.+..+..+| .|..+-..+++|+..+.
T Consensus 399 ed~~-~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n--~W~vLPieilqgit~al 475 (618)
T KOG3762|consen 399 EDLG-GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN--PWMVLPIEILQGITHAL 475 (618)
T ss_pred hhcC-CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC--chheeeHHHHHHHHHHH
Confidence 4444 57777888888888999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHH-HHHHhhhccCCCCchhHHHHHHHH-HHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q psy8697 126 STV-AMVYVSEICHENFRPAILCLNSVF-ISCGILLTTILNLYL----DWRSLSYCFLALVLI 182 (508)
Q Consensus 126 ~~~-~~~~i~e~~~~~~rg~~~~~~~~~-~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~ 182 (508)
.+. ..+|++...||+-|..+-++.+.. .++|--+|.++++.+ +=|..|.+.++.+++
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV 538 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence 999 999999999999999999987543 566777777777666 778888888877776
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0013 Score=66.17 Aligned_cols=51 Identities=8% Similarity=0.015 Sum_probs=36.9
Q ss_pred HHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy8697 417 FFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH 467 (508)
Q Consensus 417 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~ 467 (508)
.+..........++-+.+..|..-|+.+.+.|++.++|+..-..+.=++.|
T Consensus 416 sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 416 SFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 333333333444777888889999999999999999999876666555554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.7e-07 Score=95.35 Aligned_cols=141 Identities=22% Similarity=0.163 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCccccccccccc
Q psy8697 302 HALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWH 381 (508)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (508)
.......++..+|+++.|++.||+|||+.+..+..+..++.++.. +....
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~-----------------~~~~~------------- 99 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIA-----------------FAPSY------------- 99 (451)
T ss_pred HHHHHHHhhhccccccccccccccccccccccccccccccccccc-----------------ccccc-------------
Confidence 456667788889999999999999999999999999988888877 41110
Q ss_pred ccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy8697 382 NEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKA 461 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~ 461 (508)
.+.+...+.-++.+.+.+. ..+....++.|..|++.|+...++.+....+|..++..+
T Consensus 100 ---------------------~~~~~~~~~R~~~G~~~g~-~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~ 157 (451)
T PF00083_consen 100 ---------------------NNFWMLLIGRFLIGFGIGG-AYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLI 157 (451)
T ss_pred ---------------------ccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 0223333333333333333 344556999999999999999999999888888777666
Q ss_pred hHHHhhh----ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 462 FPFAIHS----SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 462 ~g~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
.-...+. +|+..+...++.+++. .+...++||+
T Consensus 158 ~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pES 194 (451)
T PF00083_consen 158 GYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccc-cccccccccc
Confidence 5444322 3666666666665554 3344567775
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0013 Score=66.16 Aligned_cols=104 Identities=18% Similarity=0.269 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHHHhc--CCc-----chHHHHHHHHHhhcchhhHHH-HHHHhhhccCCC---CchhHHHHHHHHH
Q psy8697 85 WSLILVCVPYIISSLLTILA--DPG-----NIELLYLSKICAGIGGGMSTV-AMVYVSEICHEN---FRPAILCLNSVFI 153 (508)
Q Consensus 85 ~~l~~~~~~~~i~~~l~~~~--~~~-----~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~---~rg~~~~~~~~~~ 153 (508)
|++.++.+++.+|.++..++ +.. ..+.++++-.+.++|.|..-+ ..++++|.++++ +|.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57788999999999884433 220 136789999999999999999 999999999876 4667778889999
Q ss_pred HHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhh
Q psy8697 154 SCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLIC 189 (508)
Q Consensus 154 ~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 189 (508)
++|.+++..+..++ +|.+.|.+.++..++ +++...
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~-~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLL-ALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHH-HHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHH-HHHHHH
Confidence 99999999988888 899999999988887 444443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0002 Score=72.52 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=107.8
Q ss_pred chhhhcHHHHHHHhCCcchh---hHHHHHHHHHHHHHHHHHHHhhcccCC-eeehhhhhhHHHHHHHHHhhccccccccc
Q psy8697 281 YPVIFYAMQLFKEVGTEIDE---SHALVFLGIIRFGMSVVTTVLARGFGR-KQLLIVSAAGLGVSSILLSSNLLMKSTFT 356 (508)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~gr-r~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (508)
.....-.-.|+++.+.+.+. .+......++.++++++.++-..|.++ |+.++.+.+++.++.++..
T Consensus 51 sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~---------- 120 (488)
T KOG2325|consen 51 SIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYL---------- 120 (488)
T ss_pred eEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHH----------
Confidence 33333344555554343333 356666778889999999999999886 7788899999999999886
Q ss_pred cccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCc
Q psy8697 357 NCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLP 436 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 436 (508)
...+.+++ ..|..++.-++. +.+.+.......|+++..-
T Consensus 121 -------~l~~~~~~--------------------------------~~y~mL~~R~l~--Gvg~~n~a~lR~Y~a~~s~ 159 (488)
T KOG2325|consen 121 -------ALAYVPNG--------------------------------VKYLMLVARILT--GVGVGNFAVLRAYIADAST 159 (488)
T ss_pred -------HHHhcccc--------------------------------hHHHHHHHHHHc--CcCcccHHHHHHHHHhccC
Confidence 33343211 334444433333 3333445556789999877
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--------------ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 437 SYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--------------SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 437 ~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--------------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
.+.|.++++..+...-+|.++||.+...+... -+..+-++.+++.++..++..++.+|.
T Consensus 160 ~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 160 VEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred ccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 78888888888887778888887766554322 134466777777777777777666653
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0021 Score=62.32 Aligned_cols=155 Identities=14% Similarity=-0.001 Sum_probs=92.3
Q ss_pred HHHHHhCCcchhh-HHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccc
Q psy8697 289 QLFKEVGTEIDES-HALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLV 367 (508)
Q Consensus 289 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (508)
..+++.|++.++. ...........+...+.|.++||+|||+..+...++.+++++.-- .
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-----------------~--- 118 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-----------------S--- 118 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-----------------c---
Confidence 4456678866553 444444455677788899999999999998888888888886655 2
Q ss_pred cCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhcc----CcccchhhH
Q psy8697 368 TPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISEL----LPSYARGVC 443 (508)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~ 443 (508)
++.+..++.=++.+...+.-...--.-++.|. +|++..+..
T Consensus 119 -----------------------------------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~t 163 (354)
T PF05631_consen 119 -----------------------------------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDT 163 (354)
T ss_pred -----------------------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 12222222222222222222221111233443 455555566
Q ss_pred HHHHH-HHHHHHHHHHHHHhHHHhhh---ccchhHHHHHHHHHHhhheeEEEeccCCCC
Q psy8697 444 SGLMI-SYGYVCMFFMVKAFPFAIHS---SVIGTFNVFGLVSFTLVGFVYFYLPETKGK 498 (508)
Q Consensus 444 ~g~~~-~~~~~g~~i~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (508)
.+... ..+.+-.+.+..+.-.+.+. |...+|.....+..++.+++....+|..+.
T Consensus 164 F~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 164 FSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 66555 23444555555666666665 457788888888888877777667776543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.7e-05 Score=55.91 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=49.0
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPY 94 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~ 94 (508)
.|+++...++.+ +++.++|.+.++..+...++.+++|.++||+|+++..+....++
T Consensus 20 ~Pfl~~~~~~~G-l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 20 YPFLPLYLKQLG-LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HhhhhHhhhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 667777778766 99999999999999999999999999999999998877665543
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=2.5e-05 Score=77.10 Aligned_cols=131 Identities=16% Similarity=0.157 Sum_probs=100.1
Q ss_pred HHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHhhcchhh-HHH-HHHHhhhccCCC
Q psy8697 65 ITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPG--NIELLYLSKICAGIGGGM-STV-AMVYVSEICHEN 140 (508)
Q Consensus 65 lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~--~~~~l~~~r~l~G~~~g~-~~~-~~~~i~e~~~~~ 140 (508)
.++..|..+..++.|+.|||++.+.|.+++.+..+..+...|+ +-..+++...+..+.... ... ...+-+|.+|.+
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar 438 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR 438 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence 3444577788899999999999999999999999999988772 122222222222222111 122 556778999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHHHHHhhhhcCCCCch
Q psy8697 141 FRPAILCLNSVFISCGILLTTILNLYL---------DWRSLSYCFLALVLISGLVLICFAPESPH 196 (508)
Q Consensus 141 ~rg~~~~~~~~~~~lG~~~g~~l~~~l---------~wr~~f~~~~~~~~~~~~~~~~~l~esp~ 196 (508)
-|+.+-++..+..-+|.++|...-..+ +.|.++++.+...++ ..+.-+++||+.+
T Consensus 439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~-gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL-GILFTLLIPETKG 502 (538)
T ss_pred HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH-hHheeEEeecccc
Confidence 999999999999999999998876665 789999999999998 7778888999854
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0046 Score=63.13 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy8697 404 SDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKA 461 (508)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~ 461 (508)
+.+...+..++++..-+. .......+..+..++++|..+-.+...+-.+|-.+|+.+
T Consensus 371 ~d~~~~~~~~l~gltnGy-~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGY-LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544443333 345555778888888888888888887777777777655
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0065 Score=65.17 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=98.7
Q ss_pred chhhhcHHHHHHH-hCCcchhh-HHHHHHHHHHHHHHHHHHHhhcc-cCCeeehhhhhhHHHHHHHHHhhcccccccccc
Q psy8697 281 YPVIFYAMQLFKE-VGTEIDES-HALVFLGIIRFGMSVVTTVLARG-FGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTN 357 (508)
Q Consensus 281 ~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (508)
+++..-+..++.+ .|++.+.. .....+....-+..+++++++|+ +||++.+.++.++..++..++.
T Consensus 4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla----------- 72 (654)
T TIGR00926 4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS----------- 72 (654)
T ss_pred eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----------
Confidence 3333334444333 56654432 33444444455667888999996 6999999999999888888777
Q ss_pred ccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcc
Q psy8697 358 CAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPS 437 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 437 (508)
+- ..+.. .+ .......++.+.+ +.+...+.-|...+...|.+++
T Consensus 73 ------i~-a~~~~--------------------------~~--~~~~~~~l~gLaL-ia~G~GgiKp~vsaf~gdqf~~ 116 (654)
T TIGR00926 73 ------FG-AIPSS--------------------------GH--PLHDLLDLLGLAL-IALGTGGIKPCVSAFGGDQFEE 116 (654)
T ss_pred ------hc-cCccc--------------------------cc--chHHHHHHHHHHH-HHhhccccccCchhhhHhhcCc
Confidence 31 11100 00 0011122223333 3333333444455888888865
Q ss_pred c---chhhHHHHHHHHHHHHHHHHHHHhHHHhhh--------ccchhHHHHHHHHHHhhheeE
Q psy8697 438 Y---ARGVCSGLMISYGYVCMFFMVKAFPFAIHS--------SVIGTFNVFGLVSFTLVGFVY 489 (508)
Q Consensus 438 ~---~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--------g~~~~~~~~~~~~~~~~~~~~ 489 (508)
+ .|-....+.....++|+++++.+.+++.+. +|...|.+.+++.+++.++..
T Consensus 117 ~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 117 RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 3 367788888999999999999999998743 466677777777766655443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0042 Score=63.64 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=53.4
Q ss_pred hhhHhhhhccC---cccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEecc
Q psy8697 425 VIPWTMISELL---PSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPE 494 (508)
Q Consensus 425 ~~~~~~~~e~~---p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
.+.-++..|.. |.+ +|...+.+.....+|++++..+.|.+.+. +++..|.+.+.+..+..+...+..+|
T Consensus 105 V~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 105 VAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 33446667765 444 78889999999999999999999999998 88888888887777776655555665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0035 Score=46.94 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=49.4
Q ss_pred cccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHH
Q psy8697 278 TGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGL 338 (508)
Q Consensus 278 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 338 (508)
++...+.-|.|.++++.|++..+ .....+..+..+++.++.|.++||.++++.......++
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34566778999999999997766 47777888899999999999999999998776655443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.043 Score=56.68 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=73.9
Q ss_pred ccchhHHHHHHH-HHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhc--CCc---c-------------------
Q psy8697 54 SHFGPTTSFVII-TSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILA--DPG---N------------------- 108 (508)
Q Consensus 54 ~~~g~~~s~~~l-g~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~--~~~---~------------------- 108 (508)
+.+..+=....+ ...+......+++++++|.+++-+....+...-.++++. |+. +
T Consensus 58 e~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~ 137 (491)
T PF03219_consen 58 EVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGF 137 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHH
Confidence 333444333333 445566778999999999998877666666555555542 110 0
Q ss_pred -----hHHHHHHHHHhhcchhhHH-H-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 109 -----IELLYLSKICAGIGGGMST-V-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 109 -----~~~l~~~r~l~G~~~g~~~-~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
.|.+.+..++.-+-..... . -..+..|.++.+|-.|..+++..+.++|.++++.+...+
T Consensus 138 i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 138 IAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222233333333332 2 567889999999999999999999999999998887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.027 Score=52.15 Aligned_cols=51 Identities=20% Similarity=0.344 Sum_probs=34.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH--HH-----hh--hhHHHHHHHHHHHHHHHHhhhhc
Q psy8697 140 NFRPAILCLNSVFISCGILLTTIL--NL-----YL--DWRSLSYCFLALVLISGLVLICF 190 (508)
Q Consensus 140 ~~rg~~~~~~~~~~~lG~~~g~~l--~~-----~l--~wr~~f~~~~~~~~~~~~~~~~~ 190 (508)
|+|+..+.+...+.++|.++.-.. -. .+ +|++++.+.+++.++-.++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777788888888776433 22 11 89999999998887733333333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.049 Score=46.91 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCccccccccccc
Q psy8697 302 HALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWH 381 (508)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (508)
....+......+++++.+.+.+++|.|..++++.+...+-..... .
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-----------------~----------------- 86 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-----------------Y----------------- 86 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----------------h-----------------
Confidence 455666667778888999999999999999988887775555544 1
Q ss_pred ccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy8697 382 NEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKA 461 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~ 461 (508)
...+..+....+.+.+.+..+.. ...++.+...++.+++..++.-.+...+.++|..+
T Consensus 87 ---------------------~~~~~l~~~s~l~G~~~a~lW~a-qg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 87 ---------------------PNSYTLYPASALLGFGAALLWTA-QGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred ---------------------hhHHHHHHHHHHHhhhhHHhhHh-hhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 13344444555555555554433 34788888888999999999999999888888776
Q ss_pred hHHHh
Q psy8697 462 FPFAI 466 (508)
Q Consensus 462 ~g~l~ 466 (508)
.-.+.
T Consensus 145 ~~~~~ 149 (156)
T PF05978_consen 145 LFFIF 149 (156)
T ss_pred HHHHH
Confidence 54443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.2 Score=44.52 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=79.4
Q ss_pred cccccchhhHHHHHhhhhh--hhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHH
Q psy8697 11 PCLRKKSCTYVRYLHMYTQ--RWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLI 88 (508)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~ 88 (508)
|..++....++.++.+... .|...+ ...++..+++...++ .......+.+.+.+..+....+--+...|....
T Consensus 12 p~d~~~~v~~i~~llGiG~LlpWN~fi---Ta~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~ 86 (406)
T KOG1479|consen 12 PEDGYNLVYLIFLLLGIGTLLPWNMFI---TASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTR 86 (406)
T ss_pred cccccccHHHHHHHHhcccccchHhhh---ccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443 455443 334455444442222 334445555555555555555444444332222
Q ss_pred HHHHHHHHHH---HHHHhcC-------CcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHH
Q psy8697 89 LVCVPYIISS---LLTILAD-------PGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGI 157 (508)
Q Consensus 89 ~~~~~~~i~~---~l~~~~~-------~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~ 157 (508)
++..+..+.. ..+.++. +..+...++.-.+.|++.|.... .....++. |++.-.. ...+.+++.
T Consensus 87 ~~~~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqa----vm~G~a~aG 161 (406)
T KOG1479|consen 87 VGYLLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQA----VMSGQALAG 161 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHH----HHhcchhHh
Confidence 2222222221 1222221 11466777778888888888888 66666654 4443222 222333333
Q ss_pred HHHHHHHHhh---------hhHHHHHHHHHHHHHHHHhhhhcCCCCch
Q psy8697 158 LLTTILNLYL---------DWRSLSYCFLALVLISGLVLICFAPESPH 196 (508)
Q Consensus 158 ~~g~~l~~~l---------~wr~~f~~~~~~~~~~~~~~~~~l~esp~ 196 (508)
.+...+.-.. +=-.-|.+..++.++ .++.+..+|..|-
T Consensus 162 ~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~ll-C~i~y~~l~~lpf 208 (406)
T KOG1479|consen 162 TLTSLLRILTKAAFSDSRTSALIYFITSTVILLL-CFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHH-HHHHHHHhhcchH
Confidence 3332222211 222334444444444 5555557777664
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.091 Score=55.05 Aligned_cols=141 Identities=15% Similarity=0.121 Sum_probs=80.9
Q ss_pred ccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHH-HHHHHH-HHHHHHH----HhcCCcchHHHHHHHHHhhcch
Q psy8697 50 VMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLI-LVCVPY-IISSLLT----ILADPGNIELLYLSKICAGIGG 123 (508)
Q Consensus 50 ~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~-~~~~~~-~i~~~l~----~~~~~~~~~~l~~~r~l~G~~~ 123 (508)
+.+..+.+.+.+++.+|.++|+..++++.++.-|+...+ ++..+. .++..+. ++... ....++..-++.|+..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGL-SRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 367778899999999999999999998874433332211 111111 1111111 11111 0122334456678888
Q ss_pred hhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhcCC
Q psy8697 124 GMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLALVLISGLVLICFAP 192 (508)
Q Consensus 124 g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~l~ 192 (508)
|+..| ...+..+.. .++-++..|-......+|.++|.++.+++ |-....++.+.+.++++++..+..+
T Consensus 125 G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~~ 198 (521)
T PRK03612 125 GMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWLFR 198 (521)
T ss_pred HHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 666665432 22345667777788888888888887776 4433444445555543544444333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.1 Score=45.54 Aligned_cols=116 Identities=10% Similarity=0.035 Sum_probs=82.6
Q ss_pred CCccchhHHHHHHH-HHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCC--c---------------------
Q psy8697 52 FGSHFGPTTSFVII-TSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADP--G--------------------- 107 (508)
Q Consensus 52 s~~~~g~~~s~~~l-g~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~--~--------------------- 107 (508)
.++.+.++-...-+ ++.+..++.+++.+++.|.+++-.-...+...-+++++.-- .
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 45566677666666 77788899999999999999988777777776666665310 0
Q ss_pred -------chHHHHHHHHHhhcchhhHHH--HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 108 -------NIELLYLSKICAGIGGGMSTV--AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 108 -------~~~~l~~~r~l~G~~~g~~~~--~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
+.|...+..++.=+-.+.... -.....|.+..+|-.|..++++.+.+++.+++..+..++
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 013333333333333333322 556778999999999999999999999999999988888
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.001 Score=69.74 Aligned_cols=196 Identities=13% Similarity=0.131 Sum_probs=1.1
Q ss_pred cHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCcc
Q psy8697 286 YAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNE 364 (508)
Q Consensus 286 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 364 (508)
-+..+=++.+++..+ .......-++.++..++..++.+|..|-+.+..+.++++++.+++. .+||..=+-+-..
T Consensus 25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~-----lPhf~~~~y~~~~ 99 (539)
T PF03137_consen 25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA-----LPHFLSGPYSYEE 99 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh-----ccHhhcCCCcccc
Confidence 334443446665444 4667777788888888889999888888888899999999998887 2332221000000
Q ss_pred ccccCCcccccccccccccCCCCCC---CCCCCcc--ccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccc
Q psy8697 365 YLVTPNESMRLDHSTWHNEMQVPPS---AFNTSSC--VDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYA 439 (508)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 439 (508)
....... +.. -...+....+ ..+...+ .++......+...+..-++.+..+....++..+|+-|.++++.
T Consensus 100 ~~~~~~~----~~~-~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 100 ASNSNGN----SSI-SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred ccccccc----ccc-ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 0000000 000 0000000000 0011111 1112222222222223333333344456777799999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-----------------------ccchhHHHHHHHHHHhhheeEEE
Q psy8697 440 RGVCSGLMISYGYVCMFFMVKAFPFAIHS-----------------------SVIGTFNVFGLVSFTLVGFVYFY 491 (508)
Q Consensus 440 r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-----------------------g~~~~~~~~~~~~~~~~~~~~~~ 491 (508)
.+...|+..+...+|-++|-.+.+..... .|+..|++.+.+.++.++....+
T Consensus 175 splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 175 SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999888888876666655421 15556777777777766555544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.1 Score=52.17 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccc
Q psy8697 301 SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTW 380 (508)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (508)
.+...++.+..++..+.+.|+.||+|-|....++..+.+++..+=. ..... .
T Consensus 82 ~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~-----------------iss~p-~---------- 133 (480)
T KOG2563|consen 82 DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRL-----------------ISSLP-F---------- 133 (480)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhh-----------------hccCc-c----------
Confidence 4677788888999999999999999999999999999999887766 31111 0
Q ss_pred cccCCCCCCCCCCCccccCCCCCcchHHH--HHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHH
Q psy8697 381 HNEMQVPPSAFNTSSCVDHSSLSSDWLSL--LFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFM 458 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~ 458 (508)
-++..+..+ ..-.+....... ...++.-...--+|+++|+.+..+..+.+.+|..++
T Consensus 134 --------------------v~~~f~~~l~~~Gq~iaa~Aq~F-im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg 192 (480)
T KOG2563|consen 134 --------------------VPPLFRRPLTHTGQSIAAAAQPF-ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVG 192 (480)
T ss_pred --------------------ccccchhhhhHHhHHHHHHhhhH-hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHH
Confidence 001222111 111111111100 111111233344899999999999999999999988
Q ss_pred HHHhHHHhhh
Q psy8697 459 VKAFPFAIHS 468 (508)
Q Consensus 459 ~~~~g~l~~~ 468 (508)
..+-+.+..+
T Consensus 193 ~llppilV~~ 202 (480)
T KOG2563|consen 193 FLLPPILVPS 202 (480)
T ss_pred hhccceecCC
Confidence 8777776644
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.074 Score=56.83 Aligned_cols=211 Identities=12% Similarity=0.079 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHH
Q psy8697 265 LILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSI 343 (508)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~ 343 (508)
+++...+..+.|......+..-+..+=+..+++... .......-+++++...+..+...|..|-+++..|.++++++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 444444444444432222222222222335553333 3555556677888888888999999999999999999999998
Q ss_pred HHhhccccccccccccccCccccccCCcccccccccccccCC--------CCCCCCCCCcc-----ccCCCCCcchHHHH
Q psy8697 344 LLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQ--------VPPSAFNTSSC-----VDHSSLSSDWLSLL 410 (508)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~~~~~~~ 410 (508)
+.. .+||.- .+. +.......+..++. .+.++...... ..+.+....|..++
T Consensus 178 l~a-----lPHf~~----------~~y-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff 241 (735)
T KOG3626|consen 178 LFA-----LPHFFS----------GPY-EYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFF 241 (735)
T ss_pred HHh-----ChHHhc----------Ccc-hhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHH
Confidence 888 122110 000 00000000000000 00001110001 12233333444444
Q ss_pred HHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh--------------------cc
Q psy8697 411 FILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS--------------------SV 470 (508)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--------------------g~ 470 (508)
...++.+....-..++..+|+-|-..++......|+..+...+|-++|-.+.+.+... -|
T Consensus 242 ~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAW 321 (735)
T KOG3626|consen 242 LGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAW 321 (735)
T ss_pred HHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHH
Confidence 4444444444445666778999999999999999999999999988888887777532 14
Q ss_pred chhHHHHHHHHHHhhheeEEE
Q psy8697 471 IGTFNVFGLVSFTLVGFVYFY 491 (508)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~ 491 (508)
+..|++.+.+.++.++..+++
T Consensus 322 WlGFLi~g~~~~~~a~p~f~f 342 (735)
T KOG3626|consen 322 WLGFLICGALLLFSAVPLFFF 342 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 556778888888877665554
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.67 Score=43.82 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=86.7
Q ss_pred hhhcHHHHHHHhCCcc---hhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccc
Q psy8697 283 VIFYAMQLFKEVGTEI---DESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCA 359 (508)
Q Consensus 283 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 359 (508)
.....+.+..+.+.+. ..........+....+.++.|.+.||.|||+.+..+......+.+...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~------------- 87 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLA------------- 87 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHH-------------
Confidence 3345555555544333 234566666677777779999999999999777766655344433333
Q ss_pred ccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcc-c
Q psy8697 360 IQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPS-Y 438 (508)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~ 438 (508)
.... ...+.........+. ......+...++..|..|. +
T Consensus 88 ----~~~~-----------------------------------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 127 (338)
T COG0477 88 ----LAPN-----------------------------------VGLALLLILRLLQGL-GGGGLLPVASALLSEWFPEAT 127 (338)
T ss_pred ----hCcc-----------------------------------chHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCchh
Confidence 1000 012222222222222 2223456667899999987 6
Q ss_pred chhhHHHHHHH-HHHHHHHHHHHHhHHHhhh---ccchhHHHHHHHH
Q psy8697 439 ARGVCSGLMIS-YGYVCMFFMVKAFPFAIHS---SVIGTFNVFGLVS 481 (508)
Q Consensus 439 ~r~~~~g~~~~-~~~~g~~i~~~~~g~l~~~---g~~~~~~~~~~~~ 481 (508)
.|+...+.... ...++..+++.+.+.+... +|...+.......
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 128 ERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 78888888888 5777888888776666654 5555554444444
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.89 Score=46.84 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=38.7
Q ss_pred hhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHh
Q psy8697 425 VIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAI 466 (508)
Q Consensus 425 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~ 466 (508)
-+.|.+++|.+..++-.+-+++....+++|..+++.+..++.
T Consensus 148 ~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 148 LLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999999999999999999999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.1 Score=45.14 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHhhcccchhhhcHHHHHHH--hCCcchhh-HHHHHH-HHHHHHHHHHHHHhhcccCCeeehhhhhhHHH
Q psy8697 264 PLILLVILFTLQQFTGVYPVIFYAMQLFKE--VGTEIDES-HALVFL-GIIRFGMSVVTTVLARGFGRKQLLIVSAAGLG 339 (508)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~-~~~~~~-~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~ 339 (508)
+....+...++..+ -+.--|...++.+ .|++.++. .-.... .=..+...++...+.|.++.|++++++.+...
T Consensus 6 ~~~llc~~gf~~~f---rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i 82 (412)
T PF01770_consen 6 ITLLLCLFGFFKEF---RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI 82 (412)
T ss_pred HHHHHHHHHHHHhc---CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34444444444433 3333444444443 56655442 111111 12234455677888999999999999888877
Q ss_pred HHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHH
Q psy8697 340 VSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFS 419 (508)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (508)
+...++. +. . ..+..-+.-+.++...
T Consensus 83 ~t~~lll-----------------~~-~------------------------------------sv~~mq~~q~~yg~~~ 108 (412)
T PF01770_consen 83 ITWLLLL-----------------FG-T------------------------------------SVLAMQLMQFFYGLAT 108 (412)
T ss_pred HHHHHHH-----------------HH-C------------------------------------cHHHHHHHHHHHHHHH
Confidence 7776666 31 0 1122222222222222
Q ss_pred hhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 420 AVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 420 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
+.-...++++-...|+++--++.+...+...+|.+++..++-.+...
T Consensus 109 --a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 109 --AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred --HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22333446777777888888899999998888888888888777765
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.2 Score=45.57 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=78.1
Q ss_pred HHHHHhhhhhchhhhhh---cccchhHHHHHHHHHHHHHHHHHhcCCc----------------chHHHHHHHHHhhcch
Q psy8697 63 VIITSPVGSTVIGPIMD---YIGRKWSLILVCVPYIISSLLTILADPG----------------NIELLYLSKICAGIGG 123 (508)
Q Consensus 63 ~~lg~~~~~~~~g~l~D---r~Grk~~l~~~~~~~~i~~~l~~~~~~~----------------~~~~l~~~r~l~G~~~ 123 (508)
..+|..+++.+.+.+.+ ++||++.+.++..+..++.++.-..... ++...++.-++.|++-
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 34444455555666665 5799999999999888888877654321 1556777889999999
Q ss_pred hhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 124 GMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 124 g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
+.... .+.++.+.. +++|..+.++...-..++..++.......
T Consensus 368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999 999999999 77888888888777777777766665554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.21 Score=50.05 Aligned_cols=109 Identities=21% Similarity=0.191 Sum_probs=79.8
Q ss_pred CccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHH-----HHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHH
Q psy8697 53 GSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVP-----YIISSLLTILADPGNIELLYLSKICAGIGGGMST 127 (508)
Q Consensus 53 ~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~-----~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~ 127 (508)
.++..+....|.+|-.++.--...+ |+ |++.+.+.+- ..+.....-+.++ .|..++.-+..|+..|..+
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips--i~ivf~lif~eGLlGGa~Y 353 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS--IWIVFVLIFYEGLLGGASY 353 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHhhhHHH
Confidence 4556677777777766654322221 33 4443333222 2223333445677 8999999999999999999
Q ss_pred H-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 128 V-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 128 ~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
+ ....+.|-.++++|..+++....+-++|..++.+++-.+
T Consensus 354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9 999999999999999999999999999999999998776
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.02 Score=55.86 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=2.3
Q ss_pred cchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHh
Q psy8697 404 SDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAF 462 (508)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~ 462 (508)
+.+...+..++++..-+. .......+..+..++++|..+-.+...+-.+|-.+|..+.
T Consensus 247 ~d~~~~i~~~l~g~TNGy-l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 247 SDAWFIILMLLFGFTNGY-LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ---------------------HHHH----------------------------------
T ss_pred chHHHHHHHHHHHHccch-hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333322 3455567888888888888877777777777776665543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.056 Score=51.12 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=83.2
Q ss_pred chhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhh
Q psy8697 56 FGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVS 134 (508)
Q Consensus 56 ~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~ 134 (508)
.|.+.-+-.+...+--+......||+---+-..+...+.+.+.++.+++.+ .++-+.+-.+..++.|.... -.++-+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s--~~~sL~GV~~aSissGlGEiTFL~lss 141 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNS--VPMSLLGVVFASISSGLGEITFLALSS 141 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccc--hhHHHhhhhhhhhcCCcceeehhhhhc
Confidence 455555566666677777788888864433344556778888899999999 89888888888888888877 444433
Q ss_pred hccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy8697 135 EICHENFRPAILCLNSVFISCGILLTTILNLYL------DWRSLSYCFLALVLISGLVLICFAPES 194 (508)
Q Consensus 135 e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~l~es 194 (508)
. +++. ..+.+..+.+...++|..--..+ +-|...++...+.++.+...++.++++
T Consensus 142 ~-Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 142 R-YPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred c-CCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 3 3322 23334444444444444332222 567788888777777455555555544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.9 Score=43.96 Aligned_cols=125 Identities=18% Similarity=0.061 Sum_probs=90.7
Q ss_pred HhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHH---hcCC----c-chHHH
Q psy8697 41 LKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTI---LADP----G-NIELL 112 (508)
Q Consensus 41 ~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~---~~~~----~-~~~~l 112 (508)
..++..+ + +++.++|..-+...+....+.....++.+|+|..|.=+.+.........++. +.+. . +...+
T Consensus 282 t~yl~~~-G-~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l 359 (432)
T PF06963_consen 282 TAYLKSQ-G-YSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLL 359 (432)
T ss_pred HHHHHHC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHH
Confidence 4555444 5 9999999999999999999999999999999998887777665443333332 2222 0 13444
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
+.+-.+.=+|.=..-. ..-++-|..|+++||...+.-....++-.++...++-.+
T Consensus 360 ~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 360 LGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444455444555 788889999999999999999988888877777776665
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.51 Score=47.31 Aligned_cols=83 Identities=8% Similarity=-0.033 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhhcchhhhHhhhhccCccc---chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHH
Q psy8697 407 LSLLFILLYVFFSAVGVIVIPWTMISELLPSY---ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSF 482 (508)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~ 482 (508)
...+.+.+... ...+.=|...++.+|.++++ .|.......+...++|..++..+.+++.+. +|...|.+.++..+
T Consensus 35 ~~~~gL~lia~-G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 35 LFYIGLALIAV-GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML 113 (372)
T ss_dssp HHHHHHHHHHH-HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence 34444444433 34445555568999998765 456777888899999999999999999988 99999999888888
Q ss_pred HhhheeEE
Q psy8697 483 TLVGFVYF 490 (508)
Q Consensus 483 ~~~~~~~~ 490 (508)
++.+..+.
T Consensus 114 ~~~~~f~~ 121 (372)
T PF00854_consen 114 LALIVFLS 121 (372)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 77665444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=88.28 E-value=4.1 Score=41.79 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhhhhhchhhhhhcccch--hHHHH--HHHHHHHHHHHHHhc---------CCcchHHHHHHHHHhhcchh
Q psy8697 58 PTTSFVIITSPVGSTVIGPIMDYIGRK--WSLIL--VCVPYIISSLLTILA---------DPGNIELLYLSKICAGIGGG 124 (508)
Q Consensus 58 ~~~s~~~lg~~~~~~~~g~l~Dr~Grk--~~l~~--~~~~~~i~~~l~~~~---------~~~~~~~l~~~r~l~G~~~g 124 (508)
.....+.+|-.+|..+..+. ..-++| ++.+. .=+++.--.++|..- ++ -+..++.-++.|+..|
T Consensus 311 i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~--d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPG--DAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecc--cHHHHHHHHHHHHhhh
Confidence 45667777777777754432 112333 33322 222233333333322 23 5677778999999999
Q ss_pred hHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q psy8697 125 MSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY 166 (508)
Q Consensus 125 ~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~ 166 (508)
-... +..+..+..++++|..+-.+...+..+|..+|..++..
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999988887654
|
|
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=87.41 E-value=30 Score=33.72 Aligned_cols=70 Identities=19% Similarity=0.375 Sum_probs=52.1
Q ss_pred HHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhcc
Q psy8697 65 ITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEIC 137 (508)
Q Consensus 65 lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~ 137 (508)
+.....+++.+.+..++|-|+++.++...+...-. .=+-+. +..++-+-...|++.+..+. -.+|+++..
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr--~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPR--YETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchh--HHhhccHHHhhccccccccccCcceecHHH
Confidence 34445556666889999999999988887765332 223344 88899999999999999988 777776654
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.47 Score=47.71 Aligned_cols=159 Identities=12% Similarity=0.032 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcc----cCCeeehh-hhhh
Q psy8697 263 KPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARG----FGRKQLLI-VSAA 336 (508)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr----~grr~~l~-~~~~ 336 (508)
+.++....+.+..+++ +..-..|.+.++++.|.+..- +......-+.+++.+++.|..+|| +|||+..+ .+..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3355555555556665 566778999999998886544 344444556677788899999995 67776655 4555
Q ss_pred HHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHH---HH
Q psy8697 337 GLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLF---IL 413 (508)
Q Consensus 337 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 413 (508)
...++.++++ ..... -+ +.+.+++.+...+...+. +-
T Consensus 111 ~i~~~l~Lig-----------------~aaDi-------g~----------------~lgd~~~~~~~~rai~~~~lg~~ 150 (498)
T KOG0637|consen 111 LIAVSLFLIG-----------------YAADI-------GL----------------LLGDNERKPVKPRAIVLFILGFW 150 (498)
T ss_pred HHHHHHhhhh-----------------hHhhh-------hH----------------HhcCCcccccchHHHHHHHHHhH
Confidence 6666666555 21110 00 000111111122222221 11
Q ss_pred HHHHHHhhcchhhhHhhhhccCcccchhh-HHHHHHHHHHHHHHHHHHHhH
Q psy8697 414 LYVFFSAVGVIVIPWTMISELLPSYARGV-CSGLMISYGYVCMFFMVKAFP 463 (508)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~~~g~~i~~~~~g 463 (508)
+.=+.......|. -++..|+...+.+.+ +.+....+..+|+.+|-.+.+
T Consensus 151 LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 151 LLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 2222223333444 489999988777777 999999999999888755554
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=86.12 E-value=8.9 Score=38.04 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHhhcccchhhhcHHHHHHHhCCcchhhHHHHHHHHHHH--HHHHHHHHhhc-----ccCCeeehhh-hhhHHHHHHHH
Q psy8697 273 TLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVFLGIIRF--GMSVVTTVLAR-----GFGRKQLLIV-SAAGLGVSSIL 344 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~l~d-----r~grr~~l~~-~~~~~~~~~~~ 344 (508)
...|.... +...-.|.+++..|.+.+... .+.++.- ---++..+++| |+||||..++ +..+.+..+..
T Consensus 40 YllQGiP~-GL~~~iP~lL~ak~vSyt~~a---~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mll 115 (510)
T KOG3574|consen 40 YLLQGIPL-GLIGAIPLLLQAKGVSYTSQA---IFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLL 115 (510)
T ss_pred HHHcCCch-hHhhhhHHHhcCCCcchhhhh---hhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHH
Confidence 33444433 344488888886555433321 1111111 12356666677 9999886554 44555555555
Q ss_pred Hh
Q psy8697 345 LS 346 (508)
Q Consensus 345 l~ 346 (508)
++
T Consensus 116 Ls 117 (510)
T KOG3574|consen 116 LS 117 (510)
T ss_pred Hh
Confidence 55
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.27 E-value=16 Score=38.37 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhh
Q psy8697 440 RGVCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLV 485 (508)
Q Consensus 440 r~~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~ 485 (508)
-+...|-.+..+.+|+++|+.+.+++.-. |...+..+.+.+.++.+
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 46778889999999999999999988764 66656666655555444
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=84.71 E-value=3.5 Score=31.36 Aligned_cols=64 Identities=9% Similarity=-0.041 Sum_probs=53.2
Q ss_pred hhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHh
Q psy8697 283 VIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLS 346 (508)
Q Consensus 283 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~ 346 (508)
+.-.+|.+.++.+++.+. ....+...++.++|.+...++.++.++++.+..+.+...++.+.+.
T Consensus 11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888887766 4788888899999999999999988888888899988888888887
|
Note that many members are hypothetical proteins. |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=82.88 E-value=4.5 Score=38.80 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=82.6
Q ss_pred CccchhHHHHHHHHHhhhhhchhhhhhccc-chhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HH
Q psy8697 53 GSHFGPTTSFVIITSPVGSTVIGPIMDYIG-RKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AM 130 (508)
Q Consensus 53 ~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~G-rk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~ 130 (508)
+.|.-|....|.+|-.+..--.-..--++= --.++..-..++.+...+..+.++ ++..++.-+..|+-.|..++ ..
T Consensus 287 ~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftps--i~ivf~lI~~EGLlGGasYVNTf 364 (409)
T KOG3880|consen 287 DSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPS--IWIVFALILFEGLLGGASYVNTF 364 (409)
T ss_pred hhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHhhcCchHHHHHH
Confidence 446778888888775554322211111100 012233444556666777788898 99999999999999999999 88
Q ss_pred HHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8697 131 VYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167 (508)
Q Consensus 131 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l 167 (508)
--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus 365 ~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 365 HNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 8888889999999999999999999999998887655
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.95 E-value=13 Score=38.02 Aligned_cols=63 Identities=10% Similarity=0.186 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy8697 406 WLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS 468 (508)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 468 (508)
|.........-...+....-+.|..+.|+...++..+-+++.+...+++..++..+..++.++
T Consensus 148 Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 148 WSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 433333333333333434446689999999999999999999999999999999888888774
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 508 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-11 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 508 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 7e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 3e-09
Identities = 84/513 (16%), Positives = 155/513 (30%), Gaps = 156/513 (30%)
Query: 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIM------DYIGRKWSL 87
LF+ L L F + SP+ + P M + R ++
Sbjct: 67 LFWTL--LSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 88 ILVCVPYIISSL---------LTILADPGNIELLYLSKICAGIGG-GMSTVAMVYVSEIC 137
V Y +S L L L N+ L+ G+ G G + VA ++C
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LID------GVLGSGKTWVA----LDVC 171
Query: 138 HENFRPAILCL--NSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLICFAPESP 195
+ C +F W +L C ++ L + + + P
Sbjct: 172 LSY---KVQCKMDFKIF----------------WLNLKNCNSPETVLEMLQKLLYQID-P 211
Query: 196 HWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWR----VLCQVRTRYDETRNKKAL 251
+W D ++N+ R+ + L+ L + K + VL +N K
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRL-----LKSKPYENCLLVL-------LNVQNAK-A 258
Query: 252 WR------QIL-TTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHAL 304
W +IL TTR +K + + T + + DE +L
Sbjct: 259 WNAFNLSCKILLTTR--FKQVTDFLSAATTTHISLD----------HHSMTLTPDEVKSL 306
Query: 305 V--FLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQS 362
+ +L R Q L L++N S
Sbjct: 307 LLKYLDC-----------------RPQDLPREV---------LTTNPRRLSIIA------ 334
Query: 363 NEYLVTPNESMRLDHSTWHNEMQVPPSAFNT--SSCVDHSSLSSDWLSLLFILLYVFFSA 420
ES+R +TW N V T S ++ L +F L VF +
Sbjct: 335 --------ESIRDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFPPS 384
Query: 421 V----GVIVIPWT-MISELLPSYARGVCSGLMI-------SYGYVCMFFMVKAFP---FA 465
++ + W +I + + ++ + ++ +K +A
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 466 IHSSVIGTFNV------FGLVSFTLVGFVYFYL 492
+H S++ +N+ L+ L + Y ++
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV 128
V GPI D +GR+ +++ +++++L+ + ++ +L + G+G G+ V
Sbjct: 50 VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--SLTVLIAASAMQGMGTGVGGV 107
Query: 129 -AMVYVSEICH-ENFRPAILCLNSVFISCGILLTTI---LNLYLDWRSLSYCFLALVLIS 183
A ++ R A LN + +L I L+ +WR+ C+L L+++
Sbjct: 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRA---CYLFLLVLC 164
Query: 184 GLVLICFA---PES 194
V A PE+
Sbjct: 165 AGVTFSMARWMPET 178
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.98 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.94 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.23 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.21 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.2 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.19 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.15 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.1 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.03 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-45 Score=377.65 Aligned_cols=400 Identities=24% Similarity=0.421 Sum_probs=320.0
Q ss_pred HHhhhccccc-------ccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh---------
Q psy8697 40 YLKYLTRHYI-------VMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL--------- 103 (508)
Q Consensus 40 ~~~~i~~~~~-------~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~--------- 103 (508)
.+|.+++++. +.+..+.|++.+++.+|..+|++++|+++||+|||++++++.+++.++++++++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~ 113 (491)
T 4gc0_A 34 TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSIN 113 (491)
T ss_dssp THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS
T ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3566655543 134456789999999999999999999999999999999999999999999994
Q ss_pred ---------cCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------
Q psy8697 104 ---------ADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL------ 167 (508)
Q Consensus 104 ---------~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l------ 167 (508)
+++ ++.++++|+++|++.|...+ ..++++|+.|+++|++..++.+.+..+|.++++.++...
T Consensus 114 ~~~~~~~~~a~~--~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 191 (491)
T 4gc0_A 114 PDNTVPVYLAGY--VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA 191 (491)
T ss_dssp SSSSCCGGGGGC--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred chhHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence 678 99999999999999999999 999999999999999999999999999999999988765
Q ss_pred ------hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhh
Q psy8697 168 ------DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTR 241 (508)
Q Consensus 168 ------~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (508)
.||..+.+..++.++ .++..+++||||+|+..+ ++.+++.+.+++.+.+++..++..+..++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~-------~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~--- 260 (491)
T 4gc0_A 192 SWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSR-------GKQEQAEGILRKIMGNTLATQAVQEIKHSL--- 260 (491)
T ss_dssp TTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHT-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHc-------CchhHHHHhHHHhcCCchhHHHHHHHHHHH---
Confidence 689888888888887 777888999999999999 888888888777665433332222111111
Q ss_pred hhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHH
Q psy8697 242 YDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTV 320 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 320 (508)
++.++...... .++ .++.........+.+..+.+.+..|.+.+.+..+.+... .......++..+++.+++++
T Consensus 261 -~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (491)
T 4gc0_A 261 -DHGRKTGGRLL-MFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIM 334 (491)
T ss_dssp -HHHHHHTTHHH-HSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhhhhhhhHHH-Hhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 01111111111 221 234556666677778888888899999998887665444 35667778889999999999
Q ss_pred hhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCC
Q psy8697 321 LARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHS 400 (508)
Q Consensus 321 l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (508)
+.||+|||+.++.+...+.++.+.+. ......
T Consensus 335 l~dr~Grr~~~~~~~~~~~~~~~~l~-----------------~~~~~~------------------------------- 366 (491)
T 4gc0_A 335 TVDKFGRKPLQIIGALGMAIGMFSLG-----------------TAFYTQ------------------------------- 366 (491)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHHHHH-----------------HHHHTT-------------------------------
T ss_pred HHHhhcCcchhccchHHHHHHHHHHH-----------------HHHhcc-------------------------------
Confidence 99999999999999888888887776 322211
Q ss_pred CCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-------ccchh
Q psy8697 401 SLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-------SVIGT 473 (508)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-------g~~~~ 473 (508)
...+..++...++..+++.+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+. +....
T Consensus 367 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~ 444 (491)
T 4gc0_A 367 --APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS 444 (491)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHH
T ss_pred --cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 134455556666677778888899999999999999999999999999999999999998877543 45667
Q ss_pred HHHHHHHHHHhhheeEEEeccCCCCChHHHHhhhC
Q psy8697 474 FNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYFS 508 (508)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (508)
|++++++++++.++.++++||||+|++||+|+.||
T Consensus 445 ~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 445 YWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 88999999999988889999999999999999986
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=302.75 Aligned_cols=373 Identities=13% Similarity=0.125 Sum_probs=277.8
Q ss_pred hhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh----cCCcch
Q psy8697 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL----ADPGNI 109 (508)
Q Consensus 34 ~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~----~~~~~~ 109 (508)
...+.+.+|.+.+++ .++.+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ +++ +
T Consensus 44 ~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--~ 119 (451)
T 1pw4_A 44 RKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--I 119 (451)
T ss_dssp HTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS--S
T ss_pred HHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc--H
Confidence 344577789998887 79999999999999999999999999999999999999999999999999999 999 9
Q ss_pred HHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----h-hHHHHHHHHHHHHHH
Q psy8697 110 ELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----D-WRSLSYCFLALVLIS 183 (508)
Q Consensus 110 ~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~-wr~~f~~~~~~~~~~ 183 (508)
+.++++|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|.+++|.+++.+ + ||+.|++.+++.++.
T Consensus 120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~ 199 (451)
T 1pw4_A 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV 199 (451)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999875 7 999999999998886
Q ss_pred HHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccch
Q psy8697 184 GLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYK 263 (508)
Q Consensus 184 ~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (508)
.++.++++||+|++...+++++. +++.++ + .++. ++++....+...++.++++..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 256 (451)
T 1pw4_A 200 ALFAFAMMRDTPQSCGLPPIEEY-KNDYPD----------------D----YNEK--AEQELTAKQIFMQYVLPNKLLWY 256 (451)
T ss_dssp HHHHHHHCCCSSTTTCCCSCTTT-CCC-----------------------------------CCTHHHHHHTSSCHHHHH
T ss_pred HHHHHhhccCCHhhcCCCChhhh-cccccc----------------c----chhh--hhcccccccchHHHHHcCHHHHH
Confidence 77777889998865322211000 000000 0 0000 00011111111222555554333
Q ss_pred hHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhccc--CCeeehhhhhhHHH
Q psy8697 264 PLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGF--GRKQLLIVSAAGLG 339 (508)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~~~~~~~ 339 (508)
..+..+...........+.|.++++ .|.+... .......+++.+++.++.+++.||+ +||+.+..+..+..
T Consensus 257 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 257 -----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 2222222233356677889999887 6776544 4677778888999999999999999 99988877776666
Q ss_pred -HHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHH
Q psy8697 340 -VSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFF 418 (508)
Q Consensus 340 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (508)
++.+.+. . ... ...+.......+.+.+
T Consensus 332 ~~~~~~~~-----------------~-~~~----------------------------------~~~~~~~~~~~~~g~~ 359 (451)
T 1pw4_A 332 TIATIVYW-----------------M-NPA----------------------------------GNPTVDMICMIVIGFL 359 (451)
T ss_dssp HHHHHHTT-----------------S-CCT----------------------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------H-hcc----------------------------------cCHHHHHHHHHHHHHH
Confidence 5554444 2 110 0223333333333333
Q ss_pred HhhcchhhhHhhhhccCcccchhhHHHHHHHHHHH-HHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEE
Q psy8697 419 SAVGVIVIPWTMISELLPSYARGVCSGLMISYGYV-CMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFY 491 (508)
Q Consensus 419 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 491 (508)
.....+....++.|.+|++.|+++.|+.+...++ |..++|.+.|.+.+. |+...|++.+++.+++.++.+..
T Consensus 360 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 360 -IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp -HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455568999999999999999999999999 999999999999998 98889988888887776655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-33 Score=282.49 Aligned_cols=344 Identities=13% Similarity=0.063 Sum_probs=263.7
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHH---HhcCCcchHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLT---ILADPGNIELL 112 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~---~~~~~~~~~~l 112 (508)
...+.+|.+.++++ .++.+.|++.+.+.++..++++++|+++||+|||++++.+.++.+++.+++ +++++ ++.+
T Consensus 44 ~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~--~~~l 120 (438)
T 3o7q_A 44 LNDILLPQFQQAFT-LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN--YTLF 120 (438)
T ss_dssp HHHHHHHHHHHHSC-CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred hHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc--HHHH
Confidence 45777899999988 999999999999999999999999999999999999999999999999999 88999 9999
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----h------------------
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----D------------------ 168 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~------------------ 168 (508)
+++|++.|++.+...+ ..+++.|++|+++|++++++.+.+.++|.++++.+++.+ +
T Consensus 121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 200 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAY 200 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhh
Confidence 9999999999999999 999999999999999999999999999999999998877 2
Q ss_pred -------hHHHHHHHHHHHHHHHHhhhh-cCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhh
Q psy8697 169 -------WRSLSYCFLALVLISGLVLIC-FAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRT 240 (508)
Q Consensus 169 -------wr~~f~~~~~~~~~~~~~~~~-~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (508)
||+.|++.+++.++..++..+ ..||+++...++ +
T Consensus 201 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------~------------------------------- 242 (438)
T 3o7q_A 201 KHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-------A------------------------------- 242 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-------S-------------------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-------c-------------------------------
Confidence 999998888777764444333 345554210000 0
Q ss_pred hhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHH-HHHh-CCcchh-hHHHHHHHHHHHHHHHH
Q psy8697 241 RYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQL-FKEV-GTEIDE-SHALVFLGIIRFGMSVV 317 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~-~~~~~~~~~~~~~~~~~ 317 (508)
++++..+...+ .+++|..+...+...+ ..........|.|.+ +++. |.+... ........++.+++.++
T Consensus 243 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 314 (438)
T 3o7q_A 243 --KQGSFSASLSR-LARIRHWRWAVLAQFC-----YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFT 314 (438)
T ss_dssp --STTSHHHHHHH-HTTCSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccchhhhHHH-HHhChHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 01111122233 7777765443322222 222245567888988 7774 776554 46677778889999999
Q ss_pred HHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccc
Q psy8697 318 TTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCV 397 (508)
Q Consensus 318 ~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
.+++.||+|||+.+..+.++..++.+.+. ..
T Consensus 315 ~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-----------------~~-------------------------------- 345 (438)
T 3o7q_A 315 GTWLISRFAPHKVLAAYALIAMALCLISA-----------------FA-------------------------------- 345 (438)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHH-----------------HC--------------------------------
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHH-----------------Hc--------------------------------
Confidence 99999999999999988888877776666 31
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c-cchhHH
Q psy8697 398 DHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S-VIGTFN 475 (508)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~~~~~ 475 (508)
..........+.+.+. ....+..+++..|.+|++ ++.+.++.. .+.+|+.++|.+.|.+.+. | +...|.
T Consensus 346 ------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 416 (438)
T 3o7q_A 346 ------GGHVGLIALTLCSAFM-SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAEL 416 (438)
T ss_dssp ------CHHHHHHHHHHHHHHH-TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGH
T ss_pred ------CCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 1122233333333333 334567778889999977 888888877 7789999999999999999 7 888888
Q ss_pred HHHHHHHHhhh
Q psy8697 476 VFGLVSFTLVG 486 (508)
Q Consensus 476 ~~~~~~~~~~~ 486 (508)
+.+++.++..+
T Consensus 417 ~~~~~~~~~~~ 427 (438)
T 3o7q_A 417 IPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76665555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=268.84 Aligned_cols=396 Identities=13% Similarity=0.002 Sum_probs=248.8
Q ss_pred ccccCCccchhHHHHHHHHHhhhhhchhhhhhc-ccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhH
Q psy8697 48 YIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY-IGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMS 126 (508)
Q Consensus 48 ~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr-~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~ 126 (508)
++ .+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++++ ++.++++|+++|++.+..
T Consensus 49 ~~-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 49 LH-ITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG--ASALFGSIILIIIGTGFL 125 (491)
T ss_dssp CC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS--TTHHHHHHHHHHHHHHHH
T ss_pred cC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhc
Confidence 66 899999999999999999999999999999 89999999999999999999999999 999999999999999999
Q ss_pred HH-HHHHhhhccCCCC--chhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhh
Q psy8697 127 TV-AMVYVSEICHENF--RPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPESPHWLI 199 (508)
Q Consensus 127 ~~-~~~~i~e~~~~~~--rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~ 199 (508)
.+ ..++++|++|+++ |+.++++++.+.++|..++|.+++.+ +||+.|++.++..++..++..+..|+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~--- 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD--- 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc---
Confidence 99 9999999999999 77788889999999999999999987 89999999887777644443333232111
Q ss_pred hcccccchhhhHHHHHHHHHH----------------HhCChhhhHHH-H-HHHHHhhhhhhhhhhhH-HHHHHHhcCcc
Q psy8697 200 NMDRTANVNKRMAKAEKSLKF----------------LNRNPEIFEKE-W-RVLCQVRTRYDETRNKK-ALWRQILTTRE 260 (508)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 260 (508)
++.+.++...+.++.++..+. ..+..+..+.. . ................+ ...+...+ ++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 281 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEH-LR 281 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHH-HH
Confidence 110011111122222221111 11111100000 0 00000000000000000 00000001 11
Q ss_pred cchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCc-chhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehh-----h
Q psy8697 261 CYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTE-IDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLI-----V 333 (508)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~-----~ 333 (508)
... .... .+..............+.+.+.++ .+.+ .+........++..+++.++.+++.||++||+... .
T Consensus 282 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 282 VVS-YIPL-FIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp CTT-HHHH-HHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HHH-HHHH-HHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 111 1111 111111122234455667777776 4444 23445666777888888999999999999997655 5
Q ss_pred hhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHH
Q psy8697 334 SAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFIL 413 (508)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (508)
+..+.+++.+.+. ....... .......+.......
T Consensus 360 ~~~~~~~~~~~~~-----------------~~~~~~~----------------------------~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 360 GLMFAGLSFLLMA-----------------IPGALYG----------------------------TSGKVSPLWLVGSWA 394 (491)
T ss_dssp HHHHHHHHHTTTH-----------------HHHHHCC----------------------------CCTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHHHhcC----------------------------CCCCccHHHHHHHHH
Confidence 5555555554444 2110000 000113333333333
Q ss_pred HHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeEEEec
Q psy8697 414 LYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLP 493 (508)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
+.+.+. ....+....++.|.+|++.|+++.|+.+...++|..+++.+.+.+.+.++...|..++++++++.++.++..+
T Consensus 395 l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 395 LVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 3345666799999999999999999999999999999999999988877777888888888777666666566
Q ss_pred cCCCC
Q psy8697 494 ETKGK 498 (508)
Q Consensus 494 ~~~~~ 498 (508)
+.+++
T Consensus 474 ~~~~~ 478 (491)
T 4aps_A 474 RIQGL 478 (491)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-30 Score=260.02 Aligned_cols=344 Identities=14% Similarity=0.155 Sum_probs=247.5
Q ss_pred hhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHH
Q psy8697 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLY 113 (508)
Q Consensus 34 ~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~ 113 (508)
...+.|.+|.+.++++ .++.+.+++.+.+.++..++++++|+++||+|||++++.+..+..++.++.+++++ ++.++
T Consensus 16 ~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 92 (375)
T 2gfp_A 16 QTIYIPAIADMARDLN-VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS--LTVLI 92 (375)
T ss_dssp HHHHHHHHHHHHTTSS-STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHhhhhHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc--HHHHH
Confidence 3445777888988888 99999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
+.|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.+++.++..+...
T Consensus 93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMA 172 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999988 899999999998888555567
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILL 268 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (508)
+.+||+++...++ ++..++..+ .+++|..+...+..
T Consensus 173 ~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~-~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 173 RWMPETRPVDAPR-------------------------------------------TRLLTSYKT-LFGNSGFNCYLLML 208 (375)
T ss_dssp CSSCCCSTTTCCC-------------------------------------------CCTTTCSTH-HHHHHHHHHHHHHH
T ss_pred HHCcccCCCCccc-------------------------------------------ccHHHHHHH-HhcCcchHHHHHHH
Confidence 7888876431100 000011111 44444333322221
Q ss_pred HHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhH-HHHHHHHH
Q psy8697 269 VILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAG-LGVSSILL 345 (508)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~-~~~~~~~l 345 (508)
. ...........+.|.++++ .|.+... .......+++.+++.++.+++.||.+++ +..+... ...+...+
T Consensus 209 ~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~ 281 (375)
T 2gfp_A 209 I-----GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMW 281 (375)
T ss_dssp H-----HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSS
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 1 1222244556667777666 5554433 4566677788888899999999998772 2222222 11111110
Q ss_pred hhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchh
Q psy8697 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIV 425 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (508)
. . ...+ ..+.+...+...+.+.+.+. ..+
T Consensus 282 ~-----------------~-~~~~--------------------------------~~~~~~~~~~~~l~g~~~~~-~~~ 310 (375)
T 2gfp_A 282 I-----------------P-DWFG--------------------------------VMNVWTLLVPAALFFFGAGM-LFP 310 (375)
T ss_dssp H-----------------H-HHHH--------------------------------HHHHHHHHHHHHHHHHHHHH-TSS
T ss_pred H-----------------H-hhhc--------------------------------cccHHHHHHHHHHHHHHHHH-hhH
Confidence 1 0 0000 00223233333334444333 456
Q ss_pred hhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHh
Q psy8697 426 IPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTL 484 (508)
Q Consensus 426 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~ 484 (508)
...++..|..| +.|+++.|+.+...++|..++|.+.|.+.+. ++...+.. .++.+++
T Consensus 311 ~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~-~~~~~~~ 368 (375)
T 2gfp_A 311 LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM-TLMGLLI 368 (375)
T ss_dssp TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH-HHHHHHH
Confidence 66689999998 8899999999999999999999999999887 66555544 3444443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=235.05 Aligned_cols=135 Identities=10% Similarity=0.096 Sum_probs=124.6
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcc-cchhHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHhhcchhhHHH
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYI-GRKWSLILVCVPYIISSLLTILAD-PGNIELLYLSKICAGIGGGMSTV 128 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~-Grk~~l~~~~~~~~i~~~l~~~~~-~~~~~~l~~~r~l~G~~~g~~~~ 128 (508)
.++.+.|++.+.+.++..++++++|+++||+ |||+++..+.++.+++.++.++++ + ++.++++|++.|++.+...+
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~ 128 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHS--VQGFYTGLFLIALGSGGIKP 128 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHTTHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhccccch
Confidence 7899999999999999999999999999999 999999999999999999999999 8 99999999999999999999
Q ss_pred -HHHHhhhccCCCCchhHHHH---HHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhh
Q psy8697 129 -AMVYVSEICHENFRPAILCL---NSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 129 -~~~~i~e~~~~~~rg~~~~~---~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 187 (508)
..+++.|++|+++|+++.+. .+.+.++|..++|.+++.+ +||+.|++.+++.++..++.
T Consensus 129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877666 8899999999999998877 89999999888877734333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-27 Score=241.36 Aligned_cols=361 Identities=14% Similarity=0.095 Sum_probs=226.6
Q ss_pred HHHhh-hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHH---HHHhcCCcch-HHHH
Q psy8697 39 VYLKY-LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSL---LTILADPGNI-ELLY 113 (508)
Q Consensus 39 ~~~~~-i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~---l~~~~~~~~~-~~l~ 113 (508)
|.+|. ++++++ .++.+.|++.+...++..++++++|+++||+|||++++.+..++.++.. ...+++. . ..+.
T Consensus 28 ~~~~~~l~~~~g-~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 104 (417)
T 2cfq_A 28 PFFPIWLHDINH-ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL--LQYNIL 104 (417)
T ss_dssp TTHHHHHHTTTC-CCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHH--HHTTCC
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 34554 445566 8999999999999999999999999999999999999988887755321 1122221 1 1234
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhh
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHE--NFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~--~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~~ 187 (508)
..+++.|++.+...+ ....+.++.++ ++|+...+.......+|..++|.+++.+ +||..|++.+++.++ .++.
T Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~-~~~~ 183 (417)
T 2cfq_A 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI-LAVL 183 (417)
T ss_dssp HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTT-HHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH-HHHH
Confidence 566677776666554 44444444432 3556677777777788888999888877 799999988777655 3333
Q ss_pred hhcCC-CCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 188 ICFAP-ESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 188 ~~~l~-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
.++.+ |+|+. .+++ ++. ++++++...+...+ .++++..+...+
T Consensus 184 ~~~~~~~~~~~-~~~~------~~~----------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~ 227 (417)
T 2cfq_A 184 LFFAKTDAPSS-ATVA------NAV----------------------------GANHSAFSLKLALE-LFRQPKLWFLSL 227 (417)
T ss_dssp SCSSCCCCSCS-SCSS------SSS----------------------------SSCCCCCCHHHHHH-HTTCHHHHHHHH
T ss_pred HHHcCcccccc-cccc------ccc----------------------------ccccccccHHHHHH-HhcCCchhhHHH
Confidence 44444 43221 0000 000 00000111122233 666665443222
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHHh-CCc---chh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKEV-GTE---IDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVS 341 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~---~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 341 (508)
....... .+.....+.|.++.+. +.. ... .....+..+..+++.++.+++.||+|||+.+..+..+.+++
T Consensus 228 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~ 302 (417)
T 2cfq_A 228 YVIGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 2111111 1223334567666552 211 111 23344555677888999999999999999888888777776
Q ss_pred HHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhh
Q psy8697 342 SILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAV 421 (508)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
.+.+. .. .+.+...+...+......
T Consensus 303 ~~~~~-----------------~~-------------------------------------~~~~~~~~~~~l~~~~~~- 327 (417)
T 2cfq_A 303 IIGSS-----------------FA-------------------------------------TSALEVVILKTLHMFEVP- 327 (417)
T ss_dssp HHHHT-----------------TC-------------------------------------CSHHHHHHHTTHHHHHHH-
T ss_pred HHHHH-----------------Hh-------------------------------------ccHHHHHHHHHHHHHHHH-
Confidence 65555 20 022222222222222222
Q ss_pred cchhhhHhhhhccCcccchhhHHHHH-HHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCCC
Q psy8697 422 GVIVIPWTMISELLPSYARGVCSGLM-ISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGKT 499 (508)
Q Consensus 422 ~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
...+..+.++.|.+|++.||++.++. +..+++|++++|.+.|.+.+. ++...|.+.+++.+++.++.+...||+++.+
T Consensus 328 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 22334468999999999999999994 888899999999999999988 8888888888888887766665667665544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-11 Score=119.72 Aligned_cols=164 Identities=9% Similarity=-0.052 Sum_probs=126.4
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
........|.+.++.|.+.+. ........+...++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~------------ 83 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV------------ 83 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH------------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH------------
Confidence 344455567766677776554 4677788888999999999999999999999999999988888777
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
.. ++.+...+...+.+.+ .....+...+++.|.+|++
T Consensus 84 -----~~-------------------------------------~~~~~l~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 84 -----TT-------------------------------------SSLTVLIAASAMQGMG-TGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp -----HH-------------------------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTS
T ss_pred -----Hh-------------------------------------ccHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHCCHH
Confidence 31 1223333333333333 3334566679999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCC
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGK 498 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (508)
+|+++.++.+....+|..++|.+.+.+.+. +|+..|.+.+++.++..+...+..||++++
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999999999999999999999999999988 999999988888888777666677776543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.1e-11 Score=119.63 Aligned_cols=165 Identities=9% Similarity=-0.023 Sum_probs=121.5
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
........|.+.++.|.+... ........++..++.++.|+++||+|||+.+..+.++.+++.++..
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~------------ 109 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW------------ 109 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH------------
Confidence 345666788887888886655 5777888888999999999999999999999999999999888873
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
..... .+.+..++..++.+.+.+ ...+...+++.|.+|++
T Consensus 110 -----~~~~~----------------------------------~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~ 149 (438)
T 3o7q_A 110 -----PAAEI----------------------------------MNYTLFLVGLFIIAAGLG-CLETAANPFVTVLGPES 149 (438)
T ss_dssp -----HHHHT----------------------------------TCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCST
T ss_pred -----hcccc----------------------------------ccHHHHHHHHHHHHhhHH-HhhhhHHHHHHHHcCch
Confidence 11111 133444444444444443 34456679999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHh-hh-c-------------------------cchhHHHHHHHHHHhhheeEE-
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAI-HS-S-------------------------VIGTFNVFGLVSFTLVGFVYF- 490 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~-~~-g-------------------------~~~~~~~~~~~~~~~~~~~~~- 490 (508)
.|+++.++.+....+|..+++.+.+.+. +. + |.+.|.+.+++.++..++.++
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 54 3 677887766666555443332
Q ss_pred EeccCC
Q psy8697 491 YLPETK 496 (508)
Q Consensus 491 ~~~~~~ 496 (508)
..||++
T Consensus 230 ~~p~~~ 235 (438)
T 3o7q_A 230 KFPALQ 235 (438)
T ss_dssp CCCCCT
T ss_pred cCCccc
Confidence 245543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=117.76 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=126.9
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc--cchhHHHHHHHHHH-HHHHHHHhcCCcchHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI--GRKWSLILVCVPYI-ISSLLTILADPGNIELLYL 114 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~--Grk~~l~~~~~~~~-i~~~l~~~~~~~~~~~l~~ 114 (508)
....|.+.++..+.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+.++.+.+.+.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 34466665663338999999999999999999999999999999 99999888877776 6777666664212788888
Q ss_pred HHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHH-HHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 115 SKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISC-GILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 115 ~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~l-G~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
.-++.|++.+...+ ...++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.+++.++..++..
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 89999999988888 999999999999999999999999999 999999999887 899999998888887444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-11 Score=120.38 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=122.1
Q ss_pred CCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HH
Q psy8697 52 FGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AM 130 (508)
Q Consensus 52 s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~ 130 (508)
+....++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++ .+.+++..++.|++.+...+ ..
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS--ALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS--HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888899999999999999999999999999998888888888888 88888889999998887777 88
Q ss_pred HHhhhccCCCCchhHHHH-HHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCCch
Q psy8697 131 VYVSEICHENFRPAILCL-NSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPESPH 196 (508)
Q Consensus 131 ~~i~e~~~~~~rg~~~~~-~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~esp~ 196 (508)
.+++|.+|++.|+++.++ ++....+|..++|.+++.+ +++..|.+.+++.++..++.++..||.++
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999999998 4778889999999998877 78889998888888755555666776543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=118.35 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=119.1
Q ss_pred cchhhhcHHHHHHH------hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcc-cCCeeehhhhhhHHHHHHHHHhhcccc
Q psy8697 280 VYPVIFYAMQLFKE------VGTEIDE-SHALVFLGIIRFGMSVVTTVLARG-FGRKQLLIVSAAGLGVSSILLSSNLLM 351 (508)
Q Consensus 280 ~~~~~~~~~~~~~~------~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~l~~~~~~ 351 (508)
++....+.+.++++ .|.+... ........++..++.++.|+++|| +|||+.+..+.++.+++.++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~----- 103 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA----- 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-----
Confidence 45566667777665 5665544 467778888999999999999999 8999999999999999888887
Q ss_pred ccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhh
Q psy8697 352 KSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMI 431 (508)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (508)
.. .+.+...+...+.+.+.+. ..+...+++
T Consensus 104 ------------~~-------------------------------------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~ 133 (491)
T 4aps_A 104 ------------LP-------------------------------------FGASALFGSIILIIIGTGF-LKPNVSTLV 133 (491)
T ss_dssp ------------SC-------------------------------------CSTTHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred ------------Hh-------------------------------------hhHHHHHHHHHHHHHHHHh-ccchHHHHH
Confidence 41 1333444444444443333 456667999
Q ss_pred hccCcccc--hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEE
Q psy8697 432 SELLPSYA--RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYF 490 (508)
Q Consensus 432 ~e~~p~~~--r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 490 (508)
.|.+|++. |+.+.++.+....+|..++|.+.+.+.+. +|.+.|.+.++..+++.+..++
T Consensus 134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 77888889999999999999999999997 9999998887777666555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.2e-10 Score=115.78 Aligned_cols=156 Identities=14% Similarity=-0.006 Sum_probs=111.9
Q ss_pred HHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC--CcchHHHHHHH
Q psy8697 39 VYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD--PGNIELLYLSK 116 (508)
Q Consensus 39 ~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~--~~~~~~l~~~r 116 (508)
.+.+.+.+..+ .+............+...++.++.+++.||+|||+.++.+.....++.+..+... ....+..++.-
T Consensus 298 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 298 YYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hcchHHHHhcC-CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 33455555555 5555566667777888899999999999999999999998888888776655431 10122222222
Q ss_pred HHhhcc-hhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHH
Q psy8697 117 ICAGIG-GGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----------DWRSLSYCFLALVLISG 184 (508)
Q Consensus 117 ~l~G~~-~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----------~wr~~f~~~~~~~~~~~ 184 (508)
++...+ .....+ ...+.+|.+|.+.|++++++......+|.++++.+...+ ++...|++.++++++..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 222222 222345 788999999999999999999999999988887766544 34567888888888877
Q ss_pred HhhhhcCCCCc
Q psy8697 185 LVLICFAPESP 195 (508)
Q Consensus 185 ~~~~~~l~esp 195 (508)
+..++++||+.
T Consensus 457 i~~~~~~PETk 467 (491)
T 4gc0_A 457 LFMWKFVPETK 467 (491)
T ss_dssp HHHHHHCCCCT
T ss_pred HHHHheecCCC
Confidence 77888999984
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-09 Score=113.34 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=115.3
Q ss_pred cchhhhcHHHHHHH-hC------Ccchh-hHHHHHHHHHHHHHHHHHHHhhccc-CCeeehhhhhhHHHHHHHHHhhccc
Q psy8697 280 VYPVIFYAMQLFKE-VG------TEIDE-SHALVFLGIIRFGMSVVTTVLARGF-GRKQLLIVSAAGLGVSSILLSSNLL 350 (508)
Q Consensus 280 ~~~~~~~~~~~~~~-~g------~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~l~~~~~ 350 (508)
++....+.+.++.+ .| .+... ........++..++.++.|+++||+ |||+.+..+.++.+++.++..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~---- 103 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA---- 103 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH----
Confidence 44566677777665 66 65544 4677778888899999999999999 999999999988888887777
Q ss_pred cccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhh
Q psy8697 351 MKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTM 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (508)
... .+.+...+...+.+.+. ....+...++
T Consensus 104 -------------~~~------------------------------------~~~~~~~~~~~l~g~~~-~~~~~~~~~~ 133 (524)
T 2xut_A 104 -------------IFE------------------------------------HSVQGFYTGLFLIALGS-GGIKPLVSSF 133 (524)
T ss_dssp -------------HTS------------------------------------SCHHHHHHHHHHHHHHH-HTTHHHHHHH
T ss_pred -------------Hhc------------------------------------ccHHHHHHHHHHHHHhc-cccchhHHHH
Confidence 311 02233333333333333 3345666799
Q ss_pred hhccCcccchhhHHHH---HHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhee
Q psy8697 431 ISELLPSYARGVCSGL---MISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFV 488 (508)
Q Consensus 431 ~~e~~p~~~r~~~~g~---~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 488 (508)
+.|.+|++.|+++.+. .+....+|..++|.+.+.+.+. +|...|.+.+++.++..+..
T Consensus 134 ~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 134 MGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876666 8889999999999999999987 99988988887766655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.35 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.19 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-35 Score=296.49 Aligned_cols=394 Identities=13% Similarity=0.112 Sum_probs=274.1
Q ss_pred hhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC----
Q psy8697 30 RWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD---- 105 (508)
Q Consensus 30 ~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~---- 105 (508)
.+.+...+....|.++ |++ .|++|.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 37 ~~~~~~~~~~~~p~~~-~~g-~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (447)
T d1pw4a_ 37 YYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS 114 (447)
T ss_dssp HHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS
T ss_pred HHHHHHHHHHHHHHHH-HhC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh
Confidence 3333344566678775 455 9999999999999999999999999999999999999999999999999998764
Q ss_pred CcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHH
Q psy8697 106 PGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLAL 179 (508)
Q Consensus 106 ~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~ 179 (508)
+ ++.+++.|++.|++.|...+ ..+++.|++|+++|++++++.+.+..+|..+++.++... +||+.|++.+++
T Consensus 115 ~--~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~ 192 (447)
T d1pw4a_ 115 S--IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192 (447)
T ss_dssp S--SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred h--HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence 6 89999999999999999999 999999999999999999999999999999999887765 899999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCc
Q psy8697 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTR 259 (508)
Q Consensus 180 ~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (508)
.++..++.+++.+|+|+.......++..++..++.. ++.+++...++...+..++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ 249 (447)
T d1pw4a_ 193 AILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYN-----------------------EKAEQELTAKQIFMQYVLPNK 249 (447)
T ss_dssp HHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------------------------CCTHHHHHHTSSCH
T ss_pred HHHHHHHHHHhcccchhhcccchhhhhhhhcccchh-----------------------hccccccchhhHHHHHHHcCc
Confidence 888777778888888764322211100000000000 000001112222223244444
Q ss_pred ccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhH
Q psy8697 260 ECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAG 337 (508)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 337 (508)
..+. .....+......+....+.|.++.+ .+.+... ........+..+++.++.+++.||++|++........
T Consensus 250 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 324 (447)
T d1pw4a_ 250 LLWY-----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF 324 (447)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred hHHH-----HHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchh
Confidence 3322 2222222233355677788888876 4555444 4667778888999999999999999988765554444
Q ss_pred HHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHH
Q psy8697 338 LGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVF 417 (508)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (508)
..+...... .+..... ...+...+...+.+
T Consensus 325 ~~~~~~~~~-----------------~~~~~~~--------------------------------~~~~~~~~~~~~~g- 354 (447)
T d1pw4a_ 325 MTLVTIATI-----------------VYWMNPA--------------------------------GNPTVDMICMIVIG- 354 (447)
T ss_dssp HHHHHHHHH-----------------HTTSCCT--------------------------------TCHHHHHHHHHHHH-
T ss_pred HHHHHHHHH-----------------HHHhccc--------------------------------ccHHHHHHHHHHHH-
Confidence 443333333 2111110 12333333333333
Q ss_pred HHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHH-HHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 418 FSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVC-MFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 418 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g-~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
+...+..+....+..|.+|++.||++.|+.+.+++++ .+++|.+.|.+.+. |+...+.+.+++.+++.++.+++.++.
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 434 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333445666789999999999999999999998874 56689999999998 988888888887777766655544443
Q ss_pred CCCChHHHHhh
Q psy8697 496 KGKTFVEIEKY 506 (508)
Q Consensus 496 ~~~~~~~~~~~ 506 (508)
+ |+.++..+|
T Consensus 435 ~-~r~~~~~~e 444 (447)
T d1pw4a_ 435 K-RRHEQLLQE 444 (447)
T ss_dssp H-HHHHGGGGG
T ss_pred c-ccHHHHHHh
Confidence 3 333444444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=5.9e-27 Score=232.52 Aligned_cols=364 Identities=12% Similarity=0.071 Sum_probs=242.4
Q ss_pred HHHHhh-hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHH----H
Q psy8697 38 LVYLKY-LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIEL----L 112 (508)
Q Consensus 38 ~~~~~~-i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~----l 112 (508)
.|.+|. +.++++ .|+++.|++.+++.++..++++++|+++||+||||+++++..+..++..+..+..+ ... .
T Consensus 27 ~~~l~~~l~~~~g-~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 103 (417)
T d1pv7a_ 27 FPFFPIWLHDINH-ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF--GPLLQYNI 103 (417)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTH--HHHHHTTC
T ss_pred HHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHH
Confidence 555665 555566 99999999999999999999999999999999999999999999999988888766 433 3
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHh
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHE--NFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~--~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~ 186 (508)
++.+.+.+.+.+.... ......+..++ +++.+..+........|..+++.+++.+ +|+..+........+..++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (417)
T d1pv7a_ 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp HHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHH
Confidence 5566666666555555 44444433332 3445566777788888888888888877 6677777777666665777
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
..+..+|+|+...++ ++.+ +.+++.......+ ..+.+..+....
T Consensus 184 ~~~~~~~~~~~~~~~-------~~~~----------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~ 227 (417)
T d1pv7a_ 184 LFFAKTDAPSSATVA-------NAVG----------------------------ANHSAFSLKLALE-LFRQPKLWFLSL 227 (417)
T ss_dssp HHSSCCCSCSSSCSS-------HHHH----------------------------SCCCCCCHHHHHH-HTTSSHHHHHHH
T ss_pred HHHHhcccccchhhh-------hhhh----------------------------hhccccccccccc-ccccccccchhh
Confidence 778888876532221 0000 0001111111122 333333222222
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHHhCCcc----hh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKEVGTEI----DE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVS 341 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 341 (508)
........ ........+.+......+. .. ........+...++..+.+++.||.++|+.+..+..+.+++
T Consensus 228 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~ 302 (417)
T d1pv7a_ 228 YVIGVSCT-----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-----HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHh
Confidence 22221111 1111122222222211111 11 23455566777888899999999999999999999988888
Q ss_pred HHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhh
Q psy8697 342 SILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAV 421 (508)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
.+.+. .. .+.+...+...+.+.+.+.
T Consensus 303 ~~~~~-----------------~~-------------------------------------~~~~~~~~~~~l~g~~~~~ 328 (417)
T d1pv7a_ 303 IIGSS-----------------FA-------------------------------------TSALEVVILKTLHMFEVPF 328 (417)
T ss_dssp HHHHH-----------------TC-------------------------------------CCHHHHHHHHHHHHHHHHH
T ss_pred hhccc-----------------cc-------------------------------------cccchhhHHHHHHHHHHHH
Confidence 88877 31 1334444444444444443
Q ss_pred cchhhhHhhhhccCcccchhhHHHHHH-HHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCCC
Q psy8697 422 GVIVIPWTMISELLPSYARGVCSGLMI-SYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGKT 499 (508)
Q Consensus 422 ~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
..+...+++.|.+|++.|+++.|+.. ....+|..++|.+.|.+.|. |+..++++.+++.++..++..+.+++++..+
T Consensus 329 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 329 -LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp -HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred -HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 44566699999999999999999865 55779999999999999999 9999999999888888777777777766665
Q ss_pred h
Q psy8697 500 F 500 (508)
Q Consensus 500 ~ 500 (508)
.
T Consensus 408 ~ 408 (417)
T d1pv7a_ 408 L 408 (417)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=2.9e-12 Score=125.19 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=128.0
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-H
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-A 129 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~ 129 (508)
.+....+...+...++..++..+.+++.||+|||+.+..+..+.+++.++..+.++ .+.+++..++.|++.+...+ .
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS--ALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc--cchhhHHHHHHHHHHHHHHHHH
Confidence 56677788889999999999999999999999999999999999999999999999 99999999999999999999 9
Q ss_pred HHHhhhccCCCCchhHHHHH-HHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy8697 130 MVYVSEICHENFRPAILCLN-SVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPES 194 (508)
Q Consensus 130 ~~~i~e~~~~~~rg~~~~~~-~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~es 194 (508)
.+++.|.+|+++|+++.++. +....+|..++|.+++++ ||+..|++.+++.++..++..+.+++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999985 566789999999988877 899999999988888666666666654
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=9.7e-12 Score=123.54 Aligned_cols=160 Identities=9% Similarity=-0.013 Sum_probs=118.0
Q ss_pred hhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccccc
Q psy8697 283 VIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQ 361 (508)
Q Consensus 283 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (508)
+....|. +++.|++.++ ........++..++.++.|+++||+|||+.+..+.++.+++.++.+
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~--------------- 107 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG--------------- 107 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhcc---------------
Confidence 3344454 4556776555 5778888899999999999999999999999999999988888776
Q ss_pred CccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchh
Q psy8697 362 SNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARG 441 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 441 (508)
...... ...+...+...+.+.+.+. ..+....++.|.+|+++|+
T Consensus 108 --~~~~~~---------------------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~r~ 151 (447)
T d1pw4a_ 108 --FVPWAT---------------------------------SSIAVMFVLLFLCGWFQGM-GWPPCGRTMVHWWSQKERG 151 (447)
T ss_dssp --HCHHHH---------------------------------SSSSHHHHHHHHHHHHHHH-THHHHHHHHHTTCTTTHHH
T ss_pred --ccchhh---------------------------------hhHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHhhccc
Confidence 322110 1233344444444443333 3455568999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhheeEEEecc
Q psy8697 442 VCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGFVYFYLPE 494 (508)
Q Consensus 442 ~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
++.++.+....+|..+++.+.+.+.+. +|.+.+++.+.+.++..++.+.+.++
T Consensus 152 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 152 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhccc
Confidence 999999999999999999998887776 78888888887777766666555544
|